Multiple sequence alignment - TraesCS4A01G093200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G093200 chr4A 100.000 4589 0 0 1 4589 100665834 100670422 0.000000e+00 8475.0
1 TraesCS4A01G093200 chr4D 89.201 1889 73 32 403 2199 364548238 364546389 0.000000e+00 2237.0
2 TraesCS4A01G093200 chr4D 89.139 1777 71 37 2236 3967 364546268 364544569 0.000000e+00 2100.0
3 TraesCS4A01G093200 chr4D 85.383 431 16 5 1 386 364548717 364548289 1.990000e-108 403.0
4 TraesCS4A01G093200 chr4B 88.000 1900 96 43 403 2199 449648964 449647094 0.000000e+00 2124.0
5 TraesCS4A01G093200 chr4B 86.895 1778 83 45 2342 4029 449646856 449645139 0.000000e+00 1855.0
6 TraesCS4A01G093200 chr4B 83.971 418 26 8 1 386 449649423 449649015 3.370000e-96 363.0
7 TraesCS4A01G093200 chr7A 93.354 316 20 1 4080 4394 148252107 148252422 2.500000e-127 466.0
8 TraesCS4A01G093200 chr7A 91.104 326 28 1 4082 4406 287473470 287473795 1.520000e-119 440.0
9 TraesCS4A01G093200 chr7A 100.000 28 0 0 2287 2314 561148224 561148197 8.000000e-03 52.8
10 TraesCS4A01G093200 chr7D 92.332 313 24 0 4083 4395 539381770 539382082 3.260000e-121 446.0
11 TraesCS4A01G093200 chr7D 91.304 161 9 4 4428 4586 30854380 30854537 1.000000e-51 215.0
12 TraesCS4A01G093200 chr7D 96.875 32 1 0 1085 1116 30832063 30832032 2.000000e-03 54.7
13 TraesCS4A01G093200 chr2A 91.277 321 27 1 4076 4395 390274709 390275029 1.960000e-118 436.0
14 TraesCS4A01G093200 chr6A 91.720 314 25 1 4079 4392 588602435 588602123 7.050000e-118 435.0
15 TraesCS4A01G093200 chr6A 91.693 313 26 0 4082 4394 600260912 600261224 7.050000e-118 435.0
16 TraesCS4A01G093200 chr5A 91.693 313 25 1 4086 4398 642613903 642614214 2.540000e-117 433.0
17 TraesCS4A01G093200 chr5A 91.429 315 25 2 4086 4399 549204643 549204330 9.120000e-117 431.0
18 TraesCS4A01G093200 chr1A 91.883 308 25 0 4084 4391 540722865 540723172 9.120000e-117 431.0
19 TraesCS4A01G093200 chr3D 91.304 161 11 2 4430 4589 335200717 335200559 2.780000e-52 217.0
20 TraesCS4A01G093200 chr1D 91.304 161 11 2 4430 4589 485411688 485411530 2.780000e-52 217.0
21 TraesCS4A01G093200 chr1D 91.195 159 10 3 4430 4586 493226520 493226676 3.600000e-51 213.0
22 TraesCS4A01G093200 chrUn 91.250 160 11 2 4427 4585 96337605 96337448 1.000000e-51 215.0
23 TraesCS4A01G093200 chrUn 100.000 28 0 0 1088 1115 298903913 298903940 8.000000e-03 52.8
24 TraesCS4A01G093200 chrUn 100.000 28 0 0 1088 1115 323545259 323545232 8.000000e-03 52.8
25 TraesCS4A01G093200 chr5B 91.250 160 10 3 4428 4586 306441399 306441555 1.000000e-51 215.0
26 TraesCS4A01G093200 chr6B 90.741 162 10 4 4430 4589 140086980 140087138 1.290000e-50 211.0
27 TraesCS4A01G093200 chr5D 90.683 161 12 2 4430 4589 256271016 256270858 1.290000e-50 211.0
28 TraesCS4A01G093200 chr5D 90.184 163 12 3 4428 4589 100553434 100553275 4.650000e-50 209.0
29 TraesCS4A01G093200 chr5D 97.059 34 0 1 2285 2317 397344439 397344406 6.410000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G093200 chr4A 100665834 100670422 4588 False 8475.000000 8475 100.000000 1 4589 1 chr4A.!!$F1 4588
1 TraesCS4A01G093200 chr4D 364544569 364548717 4148 True 1580.000000 2237 87.907667 1 3967 3 chr4D.!!$R1 3966
2 TraesCS4A01G093200 chr4B 449645139 449649423 4284 True 1447.333333 2124 86.288667 1 4029 3 chr4B.!!$R1 4028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 434 0.035152 TGCTTGCCAAGGATCGATGT 60.035 50.0 0.54 0.0 0.0 3.06 F
2054 2245 0.103208 CCTGGACTGGTGATACGAGC 59.897 60.0 0.00 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2250 0.038526 CGTCCGACCAACTAGCAACT 60.039 55.0 0.0 0.0 0.0 3.16 R
3797 4212 0.105039 CCTAGCCCGAATCACTCACC 59.895 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.589716 GCCGGTACTGGTCACGTACT 61.590 60.000 21.95 0.00 37.84 2.73
55 66 1.821332 GCAGGCATGGCTACCAGTC 60.821 63.158 22.88 3.53 36.75 3.51
97 117 3.818787 CCAGCCTGATTGCGTGGC 61.819 66.667 0.00 0.00 46.42 5.01
168 189 0.106708 TGTGTGCAGTTCAGAGGTCC 59.893 55.000 0.00 0.00 0.00 4.46
183 204 0.391597 GGTCCAGACCGTGAAACTCA 59.608 55.000 0.05 0.00 42.29 3.41
184 205 1.002087 GGTCCAGACCGTGAAACTCAT 59.998 52.381 0.05 0.00 42.29 2.90
330 377 2.125552 TCGCTGTTCATCGGCCTG 60.126 61.111 0.00 0.00 44.92 4.85
331 378 3.869272 CGCTGTTCATCGGCCTGC 61.869 66.667 0.00 0.00 44.92 4.85
382 429 2.032178 GTCGTATTGCTTGCCAAGGATC 59.968 50.000 6.57 0.00 36.76 3.36
386 433 1.097232 TTGCTTGCCAAGGATCGATG 58.903 50.000 0.54 0.00 0.00 3.84
387 434 0.035152 TGCTTGCCAAGGATCGATGT 60.035 50.000 0.54 0.00 0.00 3.06
388 435 1.098050 GCTTGCCAAGGATCGATGTT 58.902 50.000 0.54 0.00 0.00 2.71
390 437 2.094545 GCTTGCCAAGGATCGATGTTTT 60.095 45.455 0.54 0.00 0.00 2.43
391 438 3.504863 CTTGCCAAGGATCGATGTTTTG 58.495 45.455 0.54 4.44 0.00 2.44
394 441 3.244976 GCCAAGGATCGATGTTTTGTTG 58.755 45.455 0.54 0.00 0.00 3.33
395 442 3.836949 CCAAGGATCGATGTTTTGTTGG 58.163 45.455 0.54 2.82 0.00 3.77
397 444 4.229096 CAAGGATCGATGTTTTGTTGGTG 58.771 43.478 0.54 0.00 0.00 4.17
398 445 3.750371 AGGATCGATGTTTTGTTGGTGA 58.250 40.909 0.54 0.00 0.00 4.02
399 446 3.502211 AGGATCGATGTTTTGTTGGTGAC 59.498 43.478 0.54 0.00 0.00 3.67
400 447 3.252215 GGATCGATGTTTTGTTGGTGACA 59.748 43.478 0.54 0.00 39.83 3.58
401 448 3.684103 TCGATGTTTTGTTGGTGACAC 57.316 42.857 0.00 0.00 42.67 3.67
414 495 2.072298 GGTGACACTCATGCTCTTGAC 58.928 52.381 5.39 0.00 0.00 3.18
416 497 1.337167 TGACACTCATGCTCTTGACGG 60.337 52.381 0.00 0.00 0.00 4.79
420 501 0.809241 CTCATGCTCTTGACGGCCTC 60.809 60.000 0.00 0.00 0.00 4.70
456 537 2.178912 TTTCCTTTCTGGCCGTAGTG 57.821 50.000 0.00 0.00 35.26 2.74
486 578 5.362105 AAAACATAGGTCGTATTAGGCCA 57.638 39.130 5.01 0.00 0.00 5.36
487 579 5.362105 AAACATAGGTCGTATTAGGCCAA 57.638 39.130 5.01 0.00 0.00 4.52
510 603 4.993029 AATTTGGTTTCACAAGAACCGA 57.007 36.364 2.02 0.00 32.39 4.69
659 752 2.470286 CTGACGCGCCGAGAAAAC 59.530 61.111 5.73 0.00 0.00 2.43
669 762 3.806958 CGCCGAGAAAACCTAGAAAAAC 58.193 45.455 0.00 0.00 0.00 2.43
674 767 6.700081 GCCGAGAAAACCTAGAAAAACAAAAT 59.300 34.615 0.00 0.00 0.00 1.82
722 815 3.680786 CGGCCACGACCAGACTCA 61.681 66.667 2.24 0.00 44.60 3.41
723 816 2.048127 GGCCACGACCAGACTCAC 60.048 66.667 0.00 0.00 0.00 3.51
754 851 3.000684 AGATAACGAAAGGAAAGGGCC 57.999 47.619 0.00 0.00 0.00 5.80
759 856 0.817654 CGAAAGGAAAGGGCCAATCC 59.182 55.000 17.35 17.35 0.00 3.01
831 928 2.752238 ACCGAGAGCAGGACGAGG 60.752 66.667 0.00 0.00 0.00 4.63
897 994 2.479566 ACACTTGGCCATACAGACAG 57.520 50.000 6.09 0.37 0.00 3.51
898 995 1.977854 ACACTTGGCCATACAGACAGA 59.022 47.619 6.09 0.00 0.00 3.41
900 997 3.181445 ACACTTGGCCATACAGACAGAAA 60.181 43.478 6.09 0.00 0.00 2.52
902 999 3.181445 ACTTGGCCATACAGACAGAAACA 60.181 43.478 6.09 0.00 0.00 2.83
904 1001 2.637382 TGGCCATACAGACAGAAACAGA 59.363 45.455 0.00 0.00 0.00 3.41
907 1004 3.618507 GCCATACAGACAGAAACAGAGCT 60.619 47.826 0.00 0.00 0.00 4.09
986 1088 1.260538 ATTGAGCTGTGGGAGAGCGA 61.261 55.000 0.00 0.00 41.61 4.93
988 1090 3.691744 GAGCTGTGGGAGAGCGACG 62.692 68.421 0.00 0.00 41.61 5.12
989 1091 3.749064 GCTGTGGGAGAGCGACGA 61.749 66.667 0.00 0.00 0.00 4.20
1009 1120 2.115291 GCGCTCCCCATGAGGAAAC 61.115 63.158 0.00 0.00 41.73 2.78
1284 1395 3.394836 AAGCAGTCGCCCTCCTCC 61.395 66.667 0.00 0.00 39.83 4.30
1365 1493 6.122277 TCTGACACAAGAAGAAGATTGGTTT 58.878 36.000 0.00 0.00 0.00 3.27
1375 1503 7.038659 AGAAGAAGATTGGTTTCTGACGATAG 58.961 38.462 0.00 0.00 35.20 2.08
1422 1561 1.138047 CGTCGTCGGCCAAGTACATC 61.138 60.000 2.24 0.00 0.00 3.06
1846 2007 1.523934 CTGTACCGTGGACGTGTTTTC 59.476 52.381 0.00 0.00 37.74 2.29
1847 2008 0.861185 GTACCGTGGACGTGTTTTCC 59.139 55.000 0.00 0.00 37.74 3.13
1853 2014 0.463204 TGGACGTGTTTTCCGGTACA 59.537 50.000 0.00 1.67 35.70 2.90
1859 2020 1.071299 GTTTTCCGGTACACCCCGT 59.929 57.895 0.00 0.00 46.66 5.28
1935 2119 3.181526 GCAATGAACTCTCACGTAGCTTG 60.182 47.826 0.00 0.00 33.30 4.01
1936 2120 4.237724 CAATGAACTCTCACGTAGCTTGA 58.762 43.478 0.00 0.00 33.30 3.02
1937 2121 3.284323 TGAACTCTCACGTAGCTTGAC 57.716 47.619 0.00 0.00 0.00 3.18
1938 2122 2.885266 TGAACTCTCACGTAGCTTGACT 59.115 45.455 0.00 0.00 0.00 3.41
1939 2123 3.318275 TGAACTCTCACGTAGCTTGACTT 59.682 43.478 0.00 0.00 0.00 3.01
1957 2141 4.714802 TGACTTAGCTAGGGCAGTGATTAA 59.285 41.667 7.43 0.00 41.70 1.40
1982 2166 2.243957 CGCAACAACCAGACGAGCA 61.244 57.895 0.00 0.00 0.00 4.26
2005 2190 9.798994 AGCATAAGATTTTGATTGATGAAAGAC 57.201 29.630 0.00 0.00 0.00 3.01
2006 2191 8.740369 GCATAAGATTTTGATTGATGAAAGACG 58.260 33.333 0.00 0.00 0.00 4.18
2054 2245 0.103208 CCTGGACTGGTGATACGAGC 59.897 60.000 0.00 0.00 0.00 5.03
2059 2250 1.476891 GACTGGTGATACGAGCCTGAA 59.523 52.381 0.00 0.00 0.00 3.02
2156 2357 3.432252 GCCGTATATGCTAACATGGACAC 59.568 47.826 0.00 0.00 37.04 3.67
2166 2367 2.457366 ACATGGACACGAACTTCTCC 57.543 50.000 0.00 0.00 0.00 3.71
2169 2370 1.080025 GGACACGAACTTCTCCGGG 60.080 63.158 0.00 0.00 34.97 5.73
2199 2403 1.476891 TGGACATGAACCTAGACGCTC 59.523 52.381 0.00 0.00 0.00 5.03
2200 2404 1.751924 GGACATGAACCTAGACGCTCT 59.248 52.381 0.00 0.00 0.00 4.09
2202 2406 2.685897 GACATGAACCTAGACGCTCTCT 59.314 50.000 0.00 0.00 0.00 3.10
2203 2407 3.878103 GACATGAACCTAGACGCTCTCTA 59.122 47.826 0.00 0.00 0.00 2.43
2204 2408 3.628487 ACATGAACCTAGACGCTCTCTAC 59.372 47.826 0.00 0.00 0.00 2.59
2205 2409 2.277969 TGAACCTAGACGCTCTCTACG 58.722 52.381 0.00 0.00 0.00 3.51
2207 2411 0.107800 ACCTAGACGCTCTCTACGCA 60.108 55.000 0.00 0.00 0.00 5.24
2208 2412 1.015109 CCTAGACGCTCTCTACGCAA 58.985 55.000 0.00 0.00 0.00 4.85
2210 2414 2.159421 CCTAGACGCTCTCTACGCAAAA 60.159 50.000 0.00 0.00 0.00 2.44
2211 2415 2.433868 AGACGCTCTCTACGCAAAAA 57.566 45.000 0.00 0.00 0.00 1.94
2212 2416 2.329379 AGACGCTCTCTACGCAAAAAG 58.671 47.619 0.00 0.00 0.00 2.27
2213 2417 0.790814 ACGCTCTCTACGCAAAAAGC 59.209 50.000 0.00 0.00 40.87 3.51
2215 2419 1.394917 CGCTCTCTACGCAAAAAGCAT 59.605 47.619 0.00 0.00 46.13 3.79
2216 2420 2.778659 GCTCTCTACGCAAAAAGCATG 58.221 47.619 0.00 0.00 46.13 4.06
2217 2421 2.476854 GCTCTCTACGCAAAAAGCATGG 60.477 50.000 0.00 0.00 46.13 3.66
2218 2422 3.002791 CTCTCTACGCAAAAAGCATGGA 58.997 45.455 0.00 0.00 46.13 3.41
2219 2423 2.742053 TCTCTACGCAAAAAGCATGGAC 59.258 45.455 0.00 0.00 46.13 4.02
2221 2425 2.483877 TCTACGCAAAAAGCATGGACAG 59.516 45.455 0.00 0.00 46.13 3.51
2222 2426 1.032014 ACGCAAAAAGCATGGACAGT 58.968 45.000 0.00 0.00 46.13 3.55
2223 2427 2.226330 ACGCAAAAAGCATGGACAGTA 58.774 42.857 0.00 0.00 46.13 2.74
2226 2430 2.352715 GCAAAAAGCATGGACAGTACCC 60.353 50.000 0.00 0.00 44.79 3.69
2227 2431 1.821216 AAAAGCATGGACAGTACCCG 58.179 50.000 0.00 0.00 0.00 5.28
2228 2432 0.035439 AAAGCATGGACAGTACCCGG 60.035 55.000 0.00 0.00 0.00 5.73
2229 2433 2.513897 GCATGGACAGTACCCGGC 60.514 66.667 0.00 0.00 0.00 6.13
2230 2434 2.202878 CATGGACAGTACCCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
2231 2435 2.682494 ATGGACAGTACCCGGCGT 60.682 61.111 6.01 0.00 0.00 5.68
2232 2436 1.380246 ATGGACAGTACCCGGCGTA 60.380 57.895 6.01 0.00 0.00 4.42
2233 2437 1.669999 ATGGACAGTACCCGGCGTAC 61.670 60.000 19.70 19.70 46.69 3.67
2264 2571 3.864686 CTGTACCGCGTGCATGCC 61.865 66.667 24.73 11.36 0.00 4.40
2265 2572 4.688966 TGTACCGCGTGCATGCCA 62.689 61.111 24.73 13.91 0.00 4.92
2267 2574 2.669910 TACCGCGTGCATGCCAAA 60.670 55.556 24.73 7.45 0.00 3.28
2268 2575 2.043405 TACCGCGTGCATGCCAAAT 61.043 52.632 24.73 10.28 0.00 2.32
2270 2577 2.178769 CGCGTGCATGCCAAATGA 59.821 55.556 24.73 0.00 0.00 2.57
2271 2578 1.226745 CGCGTGCATGCCAAATGAT 60.227 52.632 24.73 0.00 0.00 2.45
2272 2579 1.204228 CGCGTGCATGCCAAATGATC 61.204 55.000 24.73 0.00 0.00 2.92
2273 2580 0.179132 GCGTGCATGCCAAATGATCA 60.179 50.000 20.59 0.00 0.00 2.92
2275 2582 1.535226 CGTGCATGCCAAATGATCAGG 60.535 52.381 16.68 0.00 0.00 3.86
2276 2583 1.116308 TGCATGCCAAATGATCAGGG 58.884 50.000 16.68 3.99 0.00 4.45
2278 2585 0.391597 CATGCCAAATGATCAGGGGC 59.608 55.000 21.80 21.80 44.82 5.80
2279 2586 3.122850 GCCAAATGATCAGGGGCG 58.877 61.111 16.38 0.00 34.56 6.13
2280 2587 1.754234 GCCAAATGATCAGGGGCGT 60.754 57.895 16.38 0.00 34.56 5.68
2281 2588 1.728490 GCCAAATGATCAGGGGCGTC 61.728 60.000 16.38 0.00 34.56 5.19
2282 2589 1.439353 CCAAATGATCAGGGGCGTCG 61.439 60.000 0.09 0.00 0.00 5.12
2283 2590 0.744414 CAAATGATCAGGGGCGTCGT 60.744 55.000 0.09 0.00 0.00 4.34
2284 2591 0.744414 AAATGATCAGGGGCGTCGTG 60.744 55.000 0.09 0.00 0.00 4.35
2285 2592 1.899437 AATGATCAGGGGCGTCGTGT 61.899 55.000 0.09 0.00 33.36 4.49
2286 2593 1.040893 ATGATCAGGGGCGTCGTGTA 61.041 55.000 0.09 0.00 33.36 2.90
2287 2594 1.226888 GATCAGGGGCGTCGTGTAC 60.227 63.158 0.00 0.00 33.36 2.90
2321 2636 2.821366 GTGCGTGCATCTCCCCTG 60.821 66.667 0.00 0.00 0.00 4.45
2322 2637 4.100084 TGCGTGCATCTCCCCTGG 62.100 66.667 0.00 0.00 0.00 4.45
2323 2638 4.864334 GCGTGCATCTCCCCTGGG 62.864 72.222 5.50 5.50 0.00 4.45
2324 2639 3.083349 CGTGCATCTCCCCTGGGA 61.083 66.667 16.20 6.36 42.90 4.37
2325 2640 2.592308 GTGCATCTCCCCTGGGAC 59.408 66.667 16.20 0.00 39.76 4.46
2413 2740 4.518217 GACATGATTACGCCTTTTGATCG 58.482 43.478 0.00 0.00 0.00 3.69
2419 2746 0.591170 ACGCCTTTTGATCGTTGGTG 59.409 50.000 6.05 6.05 31.89 4.17
2427 2754 0.605319 TGATCGTTGGTGGTCAAGGC 60.605 55.000 0.00 0.00 40.09 4.35
2455 2783 1.267121 ATGTCGGGGATAAGATCGGG 58.733 55.000 0.00 0.00 0.00 5.14
2456 2784 0.105862 TGTCGGGGATAAGATCGGGT 60.106 55.000 0.00 0.00 0.00 5.28
2457 2785 0.602060 GTCGGGGATAAGATCGGGTC 59.398 60.000 0.00 0.00 0.00 4.46
2458 2786 0.892358 TCGGGGATAAGATCGGGTCG 60.892 60.000 0.00 0.00 0.00 4.79
2459 2787 1.874345 CGGGGATAAGATCGGGTCGG 61.874 65.000 0.00 0.00 0.00 4.79
2460 2788 1.542187 GGGGATAAGATCGGGTCGGG 61.542 65.000 0.00 0.00 0.00 5.14
2489 2817 1.826921 GACCCAGGTATCTCGCCGA 60.827 63.158 0.00 0.00 0.00 5.54
2500 2828 1.566404 TCTCGCCGATACGTTACGTA 58.434 50.000 19.92 19.92 46.28 3.57
2502 2830 0.581529 TCGCCGATACGTTACGTAGG 59.418 55.000 21.89 18.61 45.45 3.18
2504 2832 1.525197 CGCCGATACGTTACGTAGGTA 59.475 52.381 21.89 1.98 45.45 3.08
2520 2848 2.520982 TATGGGGCGGAGGACTCG 60.521 66.667 0.00 0.00 0.00 4.18
2531 2867 1.576356 GAGGACTCGTCATCATTGCC 58.424 55.000 6.82 0.00 39.89 4.52
2532 2868 0.904649 AGGACTCGTCATCATTGCCA 59.095 50.000 0.00 0.00 0.00 4.92
2570 2923 2.688446 GCTTGGGAAGGTAATTAGTGCC 59.312 50.000 0.00 0.00 0.00 5.01
2741 3094 1.466950 TCAAAATCGGTTGGTGATCGC 59.533 47.619 0.00 0.00 0.00 4.58
2819 3192 0.179000 GTGCTCCAATCCATCGACCT 59.821 55.000 0.00 0.00 0.00 3.85
2820 3193 0.465705 TGCTCCAATCCATCGACCTC 59.534 55.000 0.00 0.00 0.00 3.85
2856 3231 2.432510 GACCATGGAGTCAACCCTCTAG 59.567 54.545 21.47 0.00 36.73 2.43
2895 3285 1.094785 GATGATTTGGGGTGGACACG 58.905 55.000 0.00 0.00 0.00 4.49
2898 3288 1.228429 ATTTGGGGTGGACACGTGG 60.228 57.895 21.57 1.66 0.00 4.94
2931 3321 0.855349 GCTGACGTGTGTGTTCTCTG 59.145 55.000 0.00 0.00 0.00 3.35
2952 3342 3.925630 AATGGACGTGCAGGGGCTG 62.926 63.158 16.77 0.00 41.91 4.85
3000 3390 1.663379 CGGAGGACTCGGTGTGCATA 61.663 60.000 4.58 0.00 39.64 3.14
3003 3393 1.144057 GGACTCGGTGTGCATAGGG 59.856 63.158 0.00 0.00 36.96 3.53
3187 3577 2.125552 TGCAGATCAAGTCCGGCG 60.126 61.111 0.00 0.00 32.07 6.46
3188 3578 2.892425 GCAGATCAAGTCCGGCGG 60.892 66.667 22.51 22.51 0.00 6.13
3189 3579 2.892425 CAGATCAAGTCCGGCGGC 60.892 66.667 23.83 16.81 0.00 6.53
3190 3580 4.162690 AGATCAAGTCCGGCGGCC 62.163 66.667 23.83 11.10 0.00 6.13
3417 3807 1.138661 CTCTCCATGGACTGCTTCCTC 59.861 57.143 11.44 0.00 46.10 3.71
3579 3987 2.437343 CGAAACGGAGTCGCTGCTC 61.437 63.158 0.00 0.00 45.00 4.26
3602 4010 4.703645 CCAGATGATGATGATGGCATTC 57.296 45.455 0.00 0.00 34.11 2.67
3603 4011 3.444034 CCAGATGATGATGATGGCATTCC 59.556 47.826 0.00 0.00 34.11 3.01
3640 4048 6.576313 CACACACAACACGTAGTAGTAGTAAG 59.424 42.308 0.00 0.00 41.61 2.34
3804 4219 4.337985 CTACGTACAGTAGTGGTGAGTG 57.662 50.000 13.41 0.00 45.91 3.51
3881 4296 5.041287 CGAAGCTCCGTCAATGTAAATCTA 58.959 41.667 0.00 0.00 0.00 1.98
3915 4331 4.142534 CCACTTCTGCTTGGTCACATAATG 60.143 45.833 0.00 0.00 0.00 1.90
3938 4357 5.009610 TGGACATTAACTTGTCTTCAAAGCC 59.990 40.000 8.67 0.00 44.39 4.35
3970 4389 7.323420 TGTCTGAAGAAAATGTATGACGAGAT 58.677 34.615 0.00 0.00 0.00 2.75
3976 4395 8.492673 AAGAAAATGTATGACGAGATAAAGCA 57.507 30.769 0.00 0.00 0.00 3.91
3983 4402 3.609853 TGACGAGATAAAGCATGCCTTT 58.390 40.909 15.66 15.86 45.44 3.11
4021 4440 4.329545 GCCACAGGGACGGCTTCA 62.330 66.667 0.00 0.00 45.29 3.02
4025 4444 1.918293 ACAGGGACGGCTTCATGGA 60.918 57.895 0.00 0.00 0.00 3.41
4026 4445 1.153289 CAGGGACGGCTTCATGGAG 60.153 63.158 0.00 0.00 0.00 3.86
4027 4446 2.514824 GGGACGGCTTCATGGAGC 60.515 66.667 18.45 18.45 41.96 4.70
4028 4447 2.268920 GGACGGCTTCATGGAGCA 59.731 61.111 27.19 0.00 44.49 4.26
4029 4448 2.109126 GGACGGCTTCATGGAGCAC 61.109 63.158 27.19 16.61 44.49 4.40
4030 4449 1.078848 GACGGCTTCATGGAGCACT 60.079 57.895 27.19 11.29 44.49 4.40
4031 4450 0.175760 GACGGCTTCATGGAGCACTA 59.824 55.000 27.19 0.00 44.49 2.74
4032 4451 0.176680 ACGGCTTCATGGAGCACTAG 59.823 55.000 27.19 16.53 44.49 2.57
4033 4452 0.531532 CGGCTTCATGGAGCACTAGG 60.532 60.000 27.19 7.04 44.49 3.02
4034 4453 0.833287 GGCTTCATGGAGCACTAGGA 59.167 55.000 27.19 0.00 44.49 2.94
4035 4454 1.210478 GGCTTCATGGAGCACTAGGAA 59.790 52.381 27.19 0.00 44.49 3.36
4036 4455 2.284190 GCTTCATGGAGCACTAGGAAC 58.716 52.381 21.68 0.00 42.25 3.62
4037 4456 2.093235 GCTTCATGGAGCACTAGGAACT 60.093 50.000 21.68 0.00 42.25 3.01
4038 4457 3.133003 GCTTCATGGAGCACTAGGAACTA 59.867 47.826 21.68 0.00 42.25 2.24
4039 4458 4.688021 CTTCATGGAGCACTAGGAACTAC 58.312 47.826 0.00 0.00 41.75 2.73
4040 4459 3.982516 TCATGGAGCACTAGGAACTACT 58.017 45.455 0.00 0.00 41.75 2.57
4041 4460 5.125367 TCATGGAGCACTAGGAACTACTA 57.875 43.478 0.00 0.00 41.75 1.82
4042 4461 4.888239 TCATGGAGCACTAGGAACTACTAC 59.112 45.833 0.00 0.00 41.75 2.73
4043 4462 3.629087 TGGAGCACTAGGAACTACTACC 58.371 50.000 0.00 0.00 41.75 3.18
4044 4463 3.268856 TGGAGCACTAGGAACTACTACCT 59.731 47.826 0.00 0.00 41.75 3.08
4045 4464 3.884693 GGAGCACTAGGAACTACTACCTC 59.115 52.174 0.00 0.00 41.75 3.85
4046 4465 4.385532 GGAGCACTAGGAACTACTACCTCT 60.386 50.000 0.00 0.00 41.75 3.69
4047 4466 4.528920 AGCACTAGGAACTACTACCTCTG 58.471 47.826 0.00 0.00 41.75 3.35
4048 4467 4.227754 AGCACTAGGAACTACTACCTCTGA 59.772 45.833 0.00 0.00 41.75 3.27
4049 4468 4.948621 GCACTAGGAACTACTACCTCTGAA 59.051 45.833 0.00 0.00 41.75 3.02
4050 4469 5.595133 GCACTAGGAACTACTACCTCTGAAT 59.405 44.000 0.00 0.00 41.75 2.57
4051 4470 6.771749 GCACTAGGAACTACTACCTCTGAATA 59.228 42.308 0.00 0.00 41.75 1.75
4052 4471 7.284944 GCACTAGGAACTACTACCTCTGAATAA 59.715 40.741 0.00 0.00 41.75 1.40
4053 4472 8.842280 CACTAGGAACTACTACCTCTGAATAAG 58.158 40.741 0.00 0.00 41.75 1.73
4054 4473 8.780003 ACTAGGAACTACTACCTCTGAATAAGA 58.220 37.037 0.00 0.00 41.75 2.10
4055 4474 9.629878 CTAGGAACTACTACCTCTGAATAAGAA 57.370 37.037 0.00 0.00 41.75 2.52
4057 4476 8.919145 AGGAACTACTACCTCTGAATAAGAATG 58.081 37.037 0.00 0.00 36.02 2.67
4058 4477 8.697292 GGAACTACTACCTCTGAATAAGAATGT 58.303 37.037 0.00 0.00 33.37 2.71
4061 4480 9.924010 ACTACTACCTCTGAATAAGAATGTACT 57.076 33.333 0.00 0.00 33.37 2.73
4064 4483 9.696572 ACTACCTCTGAATAAGAATGTACTACA 57.303 33.333 0.00 0.00 33.37 2.74
4067 4486 9.427821 ACCTCTGAATAAGAATGTACTACATCT 57.572 33.333 2.05 0.00 37.97 2.90
4089 4508 9.699703 CATCTAACTAAATAGAAGTCTTAGGCC 57.300 37.037 0.00 0.00 35.64 5.19
4090 4509 9.663365 ATCTAACTAAATAGAAGTCTTAGGCCT 57.337 33.333 11.78 11.78 35.64 5.19
4091 4510 9.490083 TCTAACTAAATAGAAGTCTTAGGCCTT 57.510 33.333 12.58 0.00 0.00 4.35
4094 4513 9.809395 AACTAAATAGAAGTCTTAGGCCTTTTT 57.191 29.630 12.58 0.00 0.00 1.94
4241 4660 8.635765 TTTTTCATTGAGTCTAGGCTAATGTT 57.364 30.769 18.08 0.00 32.22 2.71
4242 4661 8.635765 TTTTCATTGAGTCTAGGCTAATGTTT 57.364 30.769 18.08 0.00 32.22 2.83
4243 4662 9.733556 TTTTCATTGAGTCTAGGCTAATGTTTA 57.266 29.630 18.08 8.82 32.22 2.01
4244 4663 9.905713 TTTCATTGAGTCTAGGCTAATGTTTAT 57.094 29.630 18.08 0.00 32.22 1.40
4245 4664 9.905713 TTCATTGAGTCTAGGCTAATGTTTATT 57.094 29.630 18.08 0.00 32.22 1.40
4246 4665 9.905713 TCATTGAGTCTAGGCTAATGTTTATTT 57.094 29.630 18.08 0.00 32.22 1.40
4250 4669 9.959721 TGAGTCTAGGCTAATGTTTATTTTTCT 57.040 29.630 0.00 0.00 0.00 2.52
4273 4692 9.439461 TTCTATGAAATCTGAAGGATAGGAAGA 57.561 33.333 0.00 0.00 33.71 2.87
4274 4693 9.439461 TCTATGAAATCTGAAGGATAGGAAGAA 57.561 33.333 0.00 0.00 33.71 2.52
4277 4696 8.970859 TGAAATCTGAAGGATAGGAAGAATTC 57.029 34.615 0.00 0.00 38.03 2.17
4298 4717 4.778213 CCTTCACAGGAATAGGATTCCA 57.222 45.455 18.17 0.00 44.19 3.53
4299 4718 5.316158 CCTTCACAGGAATAGGATTCCAT 57.684 43.478 18.17 5.37 44.19 3.41
4300 4719 5.699143 CCTTCACAGGAATAGGATTCCATT 58.301 41.667 18.17 3.02 44.19 3.16
4301 4720 5.767168 CCTTCACAGGAATAGGATTCCATTC 59.233 44.000 18.17 11.30 44.19 2.67
4314 4733 7.651027 AGGATTCCATTCCTACAAATCAAAG 57.349 36.000 5.29 0.00 44.50 2.77
4315 4734 6.608808 AGGATTCCATTCCTACAAATCAAAGG 59.391 38.462 5.29 0.00 44.50 3.11
4316 4735 6.183360 GGATTCCATTCCTACAAATCAAAGGG 60.183 42.308 0.00 0.00 32.68 3.95
4317 4736 4.023291 TCCATTCCTACAAATCAAAGGGC 58.977 43.478 0.00 0.00 0.00 5.19
4318 4737 4.026052 CCATTCCTACAAATCAAAGGGCT 58.974 43.478 0.00 0.00 0.00 5.19
4319 4738 4.098501 CCATTCCTACAAATCAAAGGGCTC 59.901 45.833 0.00 0.00 0.00 4.70
4320 4739 4.657814 TTCCTACAAATCAAAGGGCTCT 57.342 40.909 0.00 0.00 0.00 4.09
4321 4740 5.772393 TTCCTACAAATCAAAGGGCTCTA 57.228 39.130 0.00 0.00 0.00 2.43
4322 4741 5.772393 TCCTACAAATCAAAGGGCTCTAA 57.228 39.130 0.00 0.00 0.00 2.10
4323 4742 6.134535 TCCTACAAATCAAAGGGCTCTAAA 57.865 37.500 0.00 0.00 0.00 1.85
4324 4743 6.180472 TCCTACAAATCAAAGGGCTCTAAAG 58.820 40.000 0.00 0.00 0.00 1.85
4325 4744 5.358160 CCTACAAATCAAAGGGCTCTAAAGG 59.642 44.000 0.00 0.00 0.00 3.11
4326 4745 4.998051 ACAAATCAAAGGGCTCTAAAGGA 58.002 39.130 0.00 0.00 0.00 3.36
4327 4746 5.393866 ACAAATCAAAGGGCTCTAAAGGAA 58.606 37.500 0.00 0.00 0.00 3.36
4328 4747 6.019108 ACAAATCAAAGGGCTCTAAAGGAAT 58.981 36.000 0.00 0.00 0.00 3.01
4329 4748 6.498303 ACAAATCAAAGGGCTCTAAAGGAATT 59.502 34.615 0.00 0.00 0.00 2.17
4330 4749 7.016563 ACAAATCAAAGGGCTCTAAAGGAATTT 59.983 33.333 0.00 0.00 0.00 1.82
4331 4750 7.559335 AATCAAAGGGCTCTAAAGGAATTTT 57.441 32.000 0.00 0.00 0.00 1.82
4332 4751 6.994421 TCAAAGGGCTCTAAAGGAATTTTT 57.006 33.333 0.00 0.00 0.00 1.94
4333 4752 6.993079 TCAAAGGGCTCTAAAGGAATTTTTC 58.007 36.000 0.00 0.00 0.00 2.29
4381 4800 9.807921 AAATTCCTACAAGATTTCTCTAAACCA 57.192 29.630 0.00 0.00 0.00 3.67
4382 4801 9.807921 AATTCCTACAAGATTTCTCTAAACCAA 57.192 29.630 0.00 0.00 0.00 3.67
4383 4802 9.807921 ATTCCTACAAGATTTCTCTAAACCAAA 57.192 29.630 0.00 0.00 0.00 3.28
4384 4803 8.848474 TCCTACAAGATTTCTCTAAACCAAAG 57.152 34.615 0.00 0.00 0.00 2.77
4385 4804 7.883311 TCCTACAAGATTTCTCTAAACCAAAGG 59.117 37.037 0.00 0.00 0.00 3.11
4386 4805 7.883311 CCTACAAGATTTCTCTAAACCAAAGGA 59.117 37.037 0.00 0.00 0.00 3.36
4387 4806 7.751768 ACAAGATTTCTCTAAACCAAAGGAG 57.248 36.000 0.00 0.00 0.00 3.69
4388 4807 6.717084 ACAAGATTTCTCTAAACCAAAGGAGG 59.283 38.462 0.00 0.00 0.00 4.30
4389 4808 5.257262 AGATTTCTCTAAACCAAAGGAGGC 58.743 41.667 0.00 0.00 0.00 4.70
4390 4809 3.434940 TTCTCTAAACCAAAGGAGGCC 57.565 47.619 0.00 0.00 0.00 5.19
4391 4810 2.632537 TCTCTAAACCAAAGGAGGCCT 58.367 47.619 3.86 3.86 33.87 5.19
4393 4812 4.172807 TCTCTAAACCAAAGGAGGCCTTA 58.827 43.478 6.77 0.00 43.92 2.69
4394 4813 4.600111 TCTCTAAACCAAAGGAGGCCTTAA 59.400 41.667 6.77 0.00 43.92 1.85
4395 4814 5.073965 TCTCTAAACCAAAGGAGGCCTTAAA 59.926 40.000 6.77 0.00 43.92 1.52
4396 4815 5.899278 TCTAAACCAAAGGAGGCCTTAAAT 58.101 37.500 6.77 0.00 43.92 1.40
4397 4816 6.319715 TCTAAACCAAAGGAGGCCTTAAATT 58.680 36.000 6.77 0.00 43.92 1.82
4398 4817 5.904984 AAACCAAAGGAGGCCTTAAATTT 57.095 34.783 6.77 3.00 43.92 1.82
4399 4818 7.951245 TCTAAACCAAAGGAGGCCTTAAATTTA 59.049 33.333 6.77 5.61 43.92 1.40
4400 4819 6.605471 AACCAAAGGAGGCCTTAAATTTAG 57.395 37.500 6.77 1.90 43.92 1.85
4401 4820 5.651303 ACCAAAGGAGGCCTTAAATTTAGT 58.349 37.500 6.77 2.55 43.92 2.24
4402 4821 6.082031 ACCAAAGGAGGCCTTAAATTTAGTT 58.918 36.000 6.77 0.00 43.92 2.24
4403 4822 7.243091 ACCAAAGGAGGCCTTAAATTTAGTTA 58.757 34.615 6.77 0.00 43.92 2.24
4404 4823 7.177921 ACCAAAGGAGGCCTTAAATTTAGTTAC 59.822 37.037 6.77 0.00 43.92 2.50
4405 4824 7.363530 CCAAAGGAGGCCTTAAATTTAGTTACC 60.364 40.741 6.77 0.00 43.92 2.85
4406 4825 5.434408 AGGAGGCCTTAAATTTAGTTACCG 58.566 41.667 6.77 0.00 0.00 4.02
4407 4826 5.190330 AGGAGGCCTTAAATTTAGTTACCGA 59.810 40.000 6.77 0.00 0.00 4.69
4408 4827 5.526479 GGAGGCCTTAAATTTAGTTACCGAG 59.474 44.000 6.77 0.00 0.00 4.63
4409 4828 5.434408 AGGCCTTAAATTTAGTTACCGAGG 58.566 41.667 0.00 5.75 0.00 4.63
4410 4829 4.577693 GGCCTTAAATTTAGTTACCGAGGG 59.422 45.833 10.44 0.00 0.00 4.30
4411 4830 5.430886 GCCTTAAATTTAGTTACCGAGGGA 58.569 41.667 10.44 0.00 0.00 4.20
4412 4831 5.526479 GCCTTAAATTTAGTTACCGAGGGAG 59.474 44.000 10.44 0.00 0.00 4.30
4413 4832 6.647229 CCTTAAATTTAGTTACCGAGGGAGT 58.353 40.000 0.00 0.00 0.00 3.85
4414 4833 7.633553 GCCTTAAATTTAGTTACCGAGGGAGTA 60.634 40.741 10.44 0.00 0.00 2.59
4415 4834 8.260114 CCTTAAATTTAGTTACCGAGGGAGTAA 58.740 37.037 0.00 0.00 0.00 2.24
4416 4835 9.828039 CTTAAATTTAGTTACCGAGGGAGTAAT 57.172 33.333 0.00 0.00 32.62 1.89
4424 4843 7.730084 AGTTACCGAGGGAGTAATATAAAACC 58.270 38.462 0.00 0.00 32.62 3.27
4425 4844 7.566509 AGTTACCGAGGGAGTAATATAAAACCT 59.433 37.037 0.00 0.00 32.62 3.50
4426 4845 6.819947 ACCGAGGGAGTAATATAAAACCTT 57.180 37.500 0.00 0.00 0.00 3.50
4427 4846 7.204243 ACCGAGGGAGTAATATAAAACCTTT 57.796 36.000 0.00 0.00 0.00 3.11
4428 4847 7.636579 ACCGAGGGAGTAATATAAAACCTTTT 58.363 34.615 0.00 0.00 0.00 2.27
4429 4848 8.771286 ACCGAGGGAGTAATATAAAACCTTTTA 58.229 33.333 0.00 0.00 37.08 1.52
4430 4849 9.269453 CCGAGGGAGTAATATAAAACCTTTTAG 57.731 37.037 0.00 0.00 36.22 1.85
4433 4852 9.848710 AGGGAGTAATATAAAACCTTTTAGAGC 57.151 33.333 0.00 0.00 36.22 4.09
4434 4853 9.623000 GGGAGTAATATAAAACCTTTTAGAGCA 57.377 33.333 0.00 0.00 36.22 4.26
4441 4860 7.689446 ATAAAACCTTTTAGAGCAACTCTCC 57.311 36.000 0.00 0.00 40.34 3.71
4442 4861 4.706842 AACCTTTTAGAGCAACTCTCCA 57.293 40.909 0.00 0.00 40.34 3.86
4443 4862 4.706842 ACCTTTTAGAGCAACTCTCCAA 57.293 40.909 0.00 0.00 40.34 3.53
4444 4863 5.248380 ACCTTTTAGAGCAACTCTCCAAT 57.752 39.130 0.00 0.00 40.34 3.16
4445 4864 5.006386 ACCTTTTAGAGCAACTCTCCAATG 58.994 41.667 0.00 0.00 40.34 2.82
4446 4865 4.397417 CCTTTTAGAGCAACTCTCCAATGG 59.603 45.833 0.00 0.00 40.34 3.16
4447 4866 3.634397 TTAGAGCAACTCTCCAATGGG 57.366 47.619 0.00 0.00 40.34 4.00
4448 4867 0.622665 AGAGCAACTCTCCAATGGGG 59.377 55.000 0.00 0.00 42.90 4.96
4449 4868 1.000396 AGCAACTCTCCAATGGGGC 60.000 57.895 0.00 0.00 36.21 5.80
4450 4869 2.409870 GCAACTCTCCAATGGGGCG 61.410 63.158 0.00 0.00 36.21 6.13
4451 4870 1.299648 CAACTCTCCAATGGGGCGA 59.700 57.895 0.00 0.00 36.21 5.54
4452 4871 1.026718 CAACTCTCCAATGGGGCGAC 61.027 60.000 0.00 0.00 36.21 5.19
4466 4885 3.550992 CGACCATTTCGTCCGCCG 61.551 66.667 0.00 0.00 43.24 6.46
4467 4886 3.861263 GACCATTTCGTCCGCCGC 61.861 66.667 0.00 0.00 36.19 6.53
4470 4889 3.202001 CATTTCGTCCGCCGCCAT 61.202 61.111 0.00 0.00 36.19 4.40
4471 4890 2.895372 ATTTCGTCCGCCGCCATC 60.895 61.111 0.00 0.00 36.19 3.51
4481 4900 3.131478 CCGCCATCCGTTTGGGTC 61.131 66.667 3.35 0.00 37.24 4.46
4482 4901 3.496131 CGCCATCCGTTTGGGTCG 61.496 66.667 3.35 0.00 37.24 4.79
4484 4903 3.131478 CCATCCGTTTGGGTCGGC 61.131 66.667 0.00 0.00 46.49 5.54
4485 4904 3.496131 CATCCGTTTGGGTCGGCG 61.496 66.667 0.00 0.00 46.49 6.46
4491 4910 4.931633 TTTGGGTCGGCGCGGAAA 62.932 61.111 19.96 7.84 0.00 3.13
4492 4911 4.931633 TTGGGTCGGCGCGGAAAA 62.932 61.111 19.96 11.45 0.00 2.29
4493 4912 4.931633 TGGGTCGGCGCGGAAAAA 62.932 61.111 19.96 4.98 0.00 1.94
4511 4930 1.006688 AAAAATCGGCCCAACACGC 60.007 52.632 0.00 0.00 0.00 5.34
4512 4931 2.428960 AAAAATCGGCCCAACACGCC 62.429 55.000 0.00 0.00 43.38 5.68
4519 4938 4.939368 CCCAACACGCCGACCCAA 62.939 66.667 0.00 0.00 0.00 4.12
4520 4939 2.902846 CCAACACGCCGACCCAAA 60.903 61.111 0.00 0.00 0.00 3.28
4521 4940 2.330041 CAACACGCCGACCCAAAC 59.670 61.111 0.00 0.00 0.00 2.93
4522 4941 3.273834 AACACGCCGACCCAAACG 61.274 61.111 0.00 0.00 0.00 3.60
4529 4948 3.708734 CGACCCAAACGGACACGC 61.709 66.667 0.00 0.00 46.04 5.34
4530 4949 3.708734 GACCCAAACGGACACGCG 61.709 66.667 3.53 3.53 46.04 6.01
4531 4950 4.534141 ACCCAAACGGACACGCGT 62.534 61.111 5.58 5.58 46.04 6.01
4532 4951 3.708734 CCCAAACGGACACGCGTC 61.709 66.667 9.86 0.00 46.04 5.19
4544 4963 4.112256 CGCGTCCGTTTTCGTCCG 62.112 66.667 0.00 0.00 42.35 4.79
4545 4964 4.419957 GCGTCCGTTTTCGTCCGC 62.420 66.667 0.00 0.00 46.48 5.54
4546 4965 3.770424 CGTCCGTTTTCGTCCGCC 61.770 66.667 0.00 0.00 42.35 6.13
4547 4966 2.356673 GTCCGTTTTCGTCCGCCT 60.357 61.111 0.00 0.00 42.35 5.52
4548 4967 2.356553 TCCGTTTTCGTCCGCCTG 60.357 61.111 0.00 0.00 42.35 4.85
4549 4968 4.084888 CCGTTTTCGTCCGCCTGC 62.085 66.667 0.00 0.00 42.35 4.85
4550 4969 4.084888 CGTTTTCGTCCGCCTGCC 62.085 66.667 0.00 0.00 38.65 4.85
4551 4970 4.084888 GTTTTCGTCCGCCTGCCG 62.085 66.667 0.00 0.00 0.00 5.69
4552 4971 4.302509 TTTTCGTCCGCCTGCCGA 62.303 61.111 0.00 0.00 40.02 5.54
4562 4981 4.856801 CCTGCCGACCCATTCCCG 62.857 72.222 0.00 0.00 0.00 5.14
4563 4982 4.856801 CTGCCGACCCATTCCCGG 62.857 72.222 0.00 0.00 45.51 5.73
4567 4986 3.158648 CGACCCATTCCCGGCCTA 61.159 66.667 0.00 0.00 0.00 3.93
4568 4987 2.516888 CGACCCATTCCCGGCCTAT 61.517 63.158 0.00 0.00 0.00 2.57
4569 4988 1.844130 GACCCATTCCCGGCCTATT 59.156 57.895 0.00 0.00 0.00 1.73
4570 4989 0.185175 GACCCATTCCCGGCCTATTT 59.815 55.000 0.00 0.00 0.00 1.40
4571 4990 0.634465 ACCCATTCCCGGCCTATTTT 59.366 50.000 0.00 0.00 0.00 1.82
4572 4991 1.007842 ACCCATTCCCGGCCTATTTTT 59.992 47.619 0.00 0.00 0.00 1.94
4573 4992 1.412343 CCCATTCCCGGCCTATTTTTG 59.588 52.381 0.00 0.00 0.00 2.44
4574 4993 2.383855 CCATTCCCGGCCTATTTTTGA 58.616 47.619 0.00 0.00 0.00 2.69
4575 4994 2.362077 CCATTCCCGGCCTATTTTTGAG 59.638 50.000 0.00 0.00 0.00 3.02
4576 4995 1.470051 TTCCCGGCCTATTTTTGAGC 58.530 50.000 0.00 0.00 0.00 4.26
4577 4996 0.395173 TCCCGGCCTATTTTTGAGCC 60.395 55.000 0.00 0.00 42.18 4.70
4580 4999 3.184736 GGCCTATTTTTGAGCCGGA 57.815 52.632 5.05 0.00 35.30 5.14
4581 5000 1.692411 GGCCTATTTTTGAGCCGGAT 58.308 50.000 5.05 0.00 35.30 4.18
4582 5001 2.031870 GGCCTATTTTTGAGCCGGATT 58.968 47.619 5.05 0.00 35.30 3.01
4583 5002 2.430694 GGCCTATTTTTGAGCCGGATTT 59.569 45.455 5.05 0.00 35.30 2.17
4584 5003 3.447742 GCCTATTTTTGAGCCGGATTTG 58.552 45.455 5.05 0.00 0.00 2.32
4585 5004 3.447742 CCTATTTTTGAGCCGGATTTGC 58.552 45.455 5.05 0.00 0.00 3.68
4586 5005 3.119173 CCTATTTTTGAGCCGGATTTGCA 60.119 43.478 5.05 0.00 0.00 4.08
4587 5006 3.615224 ATTTTTGAGCCGGATTTGCAT 57.385 38.095 5.05 0.00 0.00 3.96
4588 5007 2.652941 TTTTGAGCCGGATTTGCATC 57.347 45.000 5.05 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.584064 CCATGCCTGCCTACGTGA 59.416 61.111 0.00 0.00 0.00 4.35
55 66 4.404098 CGGGGGTCCCTTTCCGTG 62.404 72.222 14.30 0.00 42.67 4.94
114 135 0.034337 TTCCTTCCCGGTTTCACTCG 59.966 55.000 0.00 0.00 0.00 4.18
168 189 1.920574 CGCTATGAGTTTCACGGTCTG 59.079 52.381 0.00 0.00 0.00 3.51
175 196 1.078709 GCAGCACGCTATGAGTTTCA 58.921 50.000 0.00 0.00 37.77 2.69
330 377 0.041839 CGTGTTGCTCTTGTGAGTGC 60.042 55.000 0.00 0.00 42.13 4.40
331 378 0.041839 GCGTGTTGCTCTTGTGAGTG 60.042 55.000 0.00 0.00 42.13 3.51
360 407 1.003118 TCCTTGGCAAGCAATACGACT 59.997 47.619 21.77 0.00 0.00 4.18
365 412 2.708216 TCGATCCTTGGCAAGCAATA 57.292 45.000 21.77 6.97 0.00 1.90
382 429 3.064682 TGAGTGTCACCAACAAAACATCG 59.935 43.478 0.00 0.00 40.31 3.84
386 433 3.115554 GCATGAGTGTCACCAACAAAAC 58.884 45.455 0.00 0.00 40.31 2.43
387 434 3.023119 AGCATGAGTGTCACCAACAAAA 58.977 40.909 0.00 0.00 40.31 2.44
388 435 2.618241 GAGCATGAGTGTCACCAACAAA 59.382 45.455 0.00 0.00 40.31 2.83
390 437 1.417517 AGAGCATGAGTGTCACCAACA 59.582 47.619 0.00 0.00 34.78 3.33
391 438 2.175878 AGAGCATGAGTGTCACCAAC 57.824 50.000 0.00 0.00 0.00 3.77
394 441 2.072298 GTCAAGAGCATGAGTGTCACC 58.928 52.381 0.00 0.00 0.00 4.02
395 442 1.723542 CGTCAAGAGCATGAGTGTCAC 59.276 52.381 0.00 0.00 0.00 3.67
397 444 1.354040 CCGTCAAGAGCATGAGTGTC 58.646 55.000 0.00 0.00 0.00 3.67
398 445 0.671781 GCCGTCAAGAGCATGAGTGT 60.672 55.000 0.00 0.00 0.00 3.55
399 446 1.364626 GGCCGTCAAGAGCATGAGTG 61.365 60.000 0.00 0.00 0.00 3.51
400 447 1.078848 GGCCGTCAAGAGCATGAGT 60.079 57.895 0.00 0.00 0.00 3.41
401 448 0.809241 GAGGCCGTCAAGAGCATGAG 60.809 60.000 0.00 0.00 0.00 2.90
414 495 3.129502 CCTGCATGTGTGAGGCCG 61.130 66.667 0.00 0.00 0.00 6.13
416 497 0.454600 CATTCCTGCATGTGTGAGGC 59.545 55.000 0.00 0.00 0.00 4.70
420 501 3.319755 GGAAAACATTCCTGCATGTGTG 58.680 45.455 0.00 0.00 37.46 3.82
446 527 3.942377 TACTCGCCCACTACGGCCA 62.942 63.158 2.24 0.00 46.98 5.36
447 528 2.229690 TTTACTCGCCCACTACGGCC 62.230 60.000 0.00 0.00 46.98 6.13
456 537 2.199236 CGACCTATGTTTTACTCGCCC 58.801 52.381 0.00 0.00 0.00 6.13
486 578 6.166982 TCGGTTCTTGTGAAACCAAATTTTT 58.833 32.000 5.92 0.00 36.59 1.94
487 579 5.725362 TCGGTTCTTGTGAAACCAAATTTT 58.275 33.333 5.92 0.00 36.59 1.82
510 603 1.877443 CGTGGACTTTCCGGTTTGAAT 59.123 47.619 0.00 0.00 40.17 2.57
536 629 2.086869 CCTTTAGTGGAGTGCATGTGG 58.913 52.381 0.00 0.00 0.00 4.17
669 762 8.087750 TCTGCCCTATCTTGTTTAACAATTTTG 58.912 33.333 11.12 0.00 37.48 2.44
674 767 4.700213 GCTCTGCCCTATCTTGTTTAACAA 59.300 41.667 10.26 10.26 36.54 2.83
705 798 3.680786 TGAGTCTGGTCGTGGCCG 61.681 66.667 0.00 0.00 0.00 6.13
706 799 2.048127 GTGAGTCTGGTCGTGGCC 60.048 66.667 0.00 0.00 0.00 5.36
718 811 1.645710 ATCTTTCCCGGAGTGTGAGT 58.354 50.000 0.73 0.00 0.00 3.41
719 812 3.522553 GTTATCTTTCCCGGAGTGTGAG 58.477 50.000 0.73 0.00 0.00 3.51
720 813 2.094390 CGTTATCTTTCCCGGAGTGTGA 60.094 50.000 0.73 0.00 0.00 3.58
721 814 2.094390 TCGTTATCTTTCCCGGAGTGTG 60.094 50.000 0.73 0.00 0.00 3.82
722 815 2.173519 TCGTTATCTTTCCCGGAGTGT 58.826 47.619 0.73 0.00 0.00 3.55
723 816 2.953466 TCGTTATCTTTCCCGGAGTG 57.047 50.000 0.73 0.00 0.00 3.51
754 851 4.883354 GCTGGGCCTCGGGGATTG 62.883 72.222 4.80 0.00 33.58 2.67
943 1045 4.168291 CTCCTCCGCTTGGCCCTC 62.168 72.222 0.00 0.00 0.00 4.30
954 1056 1.047801 GCTCAATCTCCTCCTCCTCC 58.952 60.000 0.00 0.00 0.00 4.30
988 1090 4.899239 CCTCATGGGGAGCGCGTC 62.899 72.222 5.34 3.87 42.62 5.19
995 1106 0.038166 GCACAGTTTCCTCATGGGGA 59.962 55.000 11.36 11.36 35.33 4.81
1009 1120 2.034687 CTCCAGGTTGGGGCACAG 59.965 66.667 0.00 0.00 38.32 3.66
1375 1503 1.131126 CCATGCCAATTCAGTCACGAC 59.869 52.381 0.00 0.00 0.00 4.34
1422 1561 2.697425 GCGATGTACTGCTGCACG 59.303 61.111 0.00 0.31 0.00 5.34
1452 1591 2.175184 CTTTGTTGAGCGCCCACTCG 62.175 60.000 2.29 0.00 39.68 4.18
1464 1603 3.661678 CGTACATGCTCGTCACTTTGTTG 60.662 47.826 0.00 0.00 0.00 3.33
1792 1943 2.991728 CGTGTACGTGTGGTCGTAG 58.008 57.895 0.00 0.00 44.89 3.51
1820 1971 3.702048 TCCACGGTACAGGGCAGC 61.702 66.667 0.00 0.00 0.00 5.25
1821 1972 2.264794 GTCCACGGTACAGGGCAG 59.735 66.667 0.00 0.00 0.00 4.85
1822 1973 3.687102 CGTCCACGGTACAGGGCA 61.687 66.667 0.00 0.00 35.37 5.36
1823 1974 3.688159 ACGTCCACGGTACAGGGC 61.688 66.667 3.81 0.00 44.95 5.19
1824 1975 2.091102 AACACGTCCACGGTACAGGG 62.091 60.000 3.81 0.00 44.95 4.45
1825 1976 0.249573 AAACACGTCCACGGTACAGG 60.250 55.000 3.81 0.00 44.95 4.00
1853 2014 2.404083 CGGTATACGTGTACGGGGT 58.596 57.895 18.34 0.00 44.95 4.95
1866 2027 8.791675 GCTAGTAAAAGTCTTAGGATACGGTAT 58.208 37.037 0.00 0.00 46.39 2.73
1877 2038 7.177832 TGCATAGTGGCTAGTAAAAGTCTTA 57.822 36.000 0.00 0.00 34.04 2.10
1884 2045 4.422073 AGCATGCATAGTGGCTAGTAAA 57.578 40.909 21.98 0.00 34.25 2.01
1935 2119 3.828875 AATCACTGCCCTAGCTAAGTC 57.171 47.619 0.00 0.00 40.80 3.01
1936 2120 4.443598 GCTTAATCACTGCCCTAGCTAAGT 60.444 45.833 0.00 0.00 40.80 2.24
1937 2121 4.061596 GCTTAATCACTGCCCTAGCTAAG 58.938 47.826 0.00 0.00 40.80 2.18
1938 2122 3.711704 AGCTTAATCACTGCCCTAGCTAA 59.288 43.478 0.00 0.00 40.80 3.09
1939 2123 3.309296 AGCTTAATCACTGCCCTAGCTA 58.691 45.455 0.00 0.00 40.80 3.32
2005 2190 6.758886 AGCTGTCTACCTAATGATTTTCTTCG 59.241 38.462 0.00 0.00 0.00 3.79
2006 2191 8.499403 AAGCTGTCTACCTAATGATTTTCTTC 57.501 34.615 0.00 0.00 0.00 2.87
2054 2245 2.069273 CGACCAACTAGCAACTTCAGG 58.931 52.381 0.00 0.00 0.00 3.86
2059 2250 0.038526 CGTCCGACCAACTAGCAACT 60.039 55.000 0.00 0.00 0.00 3.16
2088 2279 1.003545 GATCGATGACAACAATGGGCG 60.004 52.381 0.54 0.00 0.00 6.13
2199 2403 2.483877 TGTCCATGCTTTTTGCGTAGAG 59.516 45.455 0.00 0.00 46.63 2.43
2200 2404 2.483877 CTGTCCATGCTTTTTGCGTAGA 59.516 45.455 0.00 0.00 46.63 2.59
2202 2406 2.226330 ACTGTCCATGCTTTTTGCGTA 58.774 42.857 0.00 0.00 46.63 4.42
2203 2407 1.032014 ACTGTCCATGCTTTTTGCGT 58.968 45.000 0.00 0.00 46.63 5.24
2204 2408 2.584791 GTACTGTCCATGCTTTTTGCG 58.415 47.619 0.00 0.00 46.63 4.85
2205 2409 2.352715 GGGTACTGTCCATGCTTTTTGC 60.353 50.000 0.00 0.00 43.25 3.68
2207 2411 2.159382 CGGGTACTGTCCATGCTTTTT 58.841 47.619 0.00 0.00 0.00 1.94
2208 2412 1.613255 CCGGGTACTGTCCATGCTTTT 60.613 52.381 0.00 0.00 0.00 2.27
2210 2414 1.602237 CCGGGTACTGTCCATGCTT 59.398 57.895 0.00 0.00 0.00 3.91
2211 2415 3.031417 GCCGGGTACTGTCCATGCT 62.031 63.158 2.18 0.00 0.00 3.79
2212 2416 2.513897 GCCGGGTACTGTCCATGC 60.514 66.667 2.18 0.00 0.00 4.06
2213 2417 1.669049 TACGCCGGGTACTGTCCATG 61.669 60.000 2.18 0.00 0.00 3.66
2215 2419 2.035469 TACGCCGGGTACTGTCCA 59.965 61.111 2.18 0.00 0.00 4.02
2216 2420 2.491621 GTACGCCGGGTACTGTCC 59.508 66.667 19.90 0.77 46.50 4.02
2241 2548 2.868331 CACGCGGTACAGTCGACG 60.868 66.667 12.47 7.86 34.96 5.12
2264 2571 0.744414 ACGACGCCCCTGATCATTTG 60.744 55.000 0.00 0.00 0.00 2.32
2265 2572 0.744414 CACGACGCCCCTGATCATTT 60.744 55.000 0.00 0.00 0.00 2.32
2267 2574 1.040893 TACACGACGCCCCTGATCAT 61.041 55.000 0.00 0.00 0.00 2.45
2268 2575 1.679641 TACACGACGCCCCTGATCA 60.680 57.895 0.00 0.00 0.00 2.92
2270 2577 2.890371 GTACACGACGCCCCTGAT 59.110 61.111 0.00 0.00 0.00 2.90
2271 2578 3.740397 CGTACACGACGCCCCTGA 61.740 66.667 0.00 0.00 46.27 3.86
2288 2595 2.796617 ACGCACGCACGTACGTAC 60.797 61.111 22.34 15.19 44.94 3.67
2289 2596 2.796207 CACGCACGCACGTACGTA 60.796 61.111 22.34 0.00 44.98 3.57
2306 2621 4.864334 CCCAGGGGAGATGCACGC 62.864 72.222 0.00 0.00 37.50 5.34
2308 2623 2.592308 GTCCCAGGGGAGATGCAC 59.408 66.667 7.47 0.00 46.16 4.57
2344 2659 1.970352 CTTCTCCTCTGCTCTGCCCC 61.970 65.000 0.00 0.00 0.00 5.80
2346 2661 1.521616 CCTTCTCCTCTGCTCTGCC 59.478 63.158 0.00 0.00 0.00 4.85
2389 2716 2.675844 TCAAAAGGCGTAATCATGTCCG 59.324 45.455 0.00 0.00 0.00 4.79
2396 2723 3.126343 ACCAACGATCAAAAGGCGTAATC 59.874 43.478 0.00 0.00 37.26 1.75
2413 2740 1.903404 CTGGGCCTTGACCACCAAC 60.903 63.158 4.53 0.00 34.69 3.77
2419 2746 1.000396 ATTGCTCTGGGCCTTGACC 60.000 57.895 4.53 0.00 40.92 4.02
2427 2754 1.987807 ATCCCCGACATTGCTCTGGG 61.988 60.000 8.46 8.46 36.29 4.45
2473 2801 2.957060 TATCGGCGAGATACCTGGG 58.043 57.895 17.22 0.00 40.66 4.45
2489 2817 2.558359 GCCCCATACCTACGTAACGTAT 59.442 50.000 8.49 8.49 41.53 3.06
2500 2828 2.446036 GTCCTCCGCCCCATACCT 60.446 66.667 0.00 0.00 0.00 3.08
2502 2830 2.857744 CGAGTCCTCCGCCCCATAC 61.858 68.421 0.00 0.00 0.00 2.39
2504 2832 4.779733 ACGAGTCCTCCGCCCCAT 62.780 66.667 0.00 0.00 0.00 4.00
2570 2923 2.885644 CCCTCCGTCGTCATTGCG 60.886 66.667 0.00 0.00 0.00 4.85
2590 2943 2.755650 CTAACCATGGGTATGTCGAGC 58.244 52.381 18.09 0.00 33.12 5.03
2602 2955 2.588877 CCCTCCGCGCTAACCATG 60.589 66.667 5.56 0.00 0.00 3.66
2819 3192 3.225177 TGGTCAAATTAACAACGGGGA 57.775 42.857 0.00 0.00 0.00 4.81
2820 3193 3.367910 CCATGGTCAAATTAACAACGGGG 60.368 47.826 2.57 0.00 0.00 5.73
2856 3231 2.051345 CCGTGCAGGTGCGAAAAC 60.051 61.111 5.57 0.00 45.83 2.43
2895 3285 2.030562 CTCCACGTCACCACCCAC 59.969 66.667 0.00 0.00 0.00 4.61
2898 3288 2.357517 CAGCTCCACGTCACCACC 60.358 66.667 0.00 0.00 0.00 4.61
2901 3291 2.430921 CGTCAGCTCCACGTCACC 60.431 66.667 6.57 0.00 32.41 4.02
2931 3321 3.499737 CCCTGCACGTCCATTCGC 61.500 66.667 0.00 0.00 0.00 4.70
3000 3390 4.841617 TCGATGCTCCGCTCCCCT 62.842 66.667 0.00 0.00 0.00 4.79
3003 3393 4.933064 CCGTCGATGCTCCGCTCC 62.933 72.222 0.00 0.00 0.00 4.70
3498 3906 4.910585 GCCACGGCCGGTATCCTG 62.911 72.222 31.76 17.28 34.56 3.86
3579 3987 0.803117 GCCATCATCATCATCTGGCG 59.197 55.000 0.00 0.00 42.57 5.69
3599 4007 3.572255 GTGTGTGGTGTTGGTATTGGAAT 59.428 43.478 0.00 0.00 0.00 3.01
3600 4008 2.952978 GTGTGTGGTGTTGGTATTGGAA 59.047 45.455 0.00 0.00 0.00 3.53
3601 4009 2.092375 TGTGTGTGGTGTTGGTATTGGA 60.092 45.455 0.00 0.00 0.00 3.53
3602 4010 2.302260 TGTGTGTGGTGTTGGTATTGG 58.698 47.619 0.00 0.00 0.00 3.16
3603 4011 3.129462 TGTTGTGTGTGGTGTTGGTATTG 59.871 43.478 0.00 0.00 0.00 1.90
3604 4012 3.129638 GTGTTGTGTGTGGTGTTGGTATT 59.870 43.478 0.00 0.00 0.00 1.89
3640 4048 4.970611 CACGTACACACATACAGCTCTATC 59.029 45.833 0.00 0.00 0.00 2.08
3731 4146 4.523943 TCCACACCTCATCAATCAAAAAGG 59.476 41.667 0.00 0.00 0.00 3.11
3732 4147 5.710513 TCCACACCTCATCAATCAAAAAG 57.289 39.130 0.00 0.00 0.00 2.27
3733 4148 7.773489 TTATCCACACCTCATCAATCAAAAA 57.227 32.000 0.00 0.00 0.00 1.94
3734 4149 7.577426 GCTTTATCCACACCTCATCAATCAAAA 60.577 37.037 0.00 0.00 0.00 2.44
3735 4150 6.127647 GCTTTATCCACACCTCATCAATCAAA 60.128 38.462 0.00 0.00 0.00 2.69
3738 4153 4.276926 GGCTTTATCCACACCTCATCAATC 59.723 45.833 0.00 0.00 0.00 2.67
3739 4154 4.079558 AGGCTTTATCCACACCTCATCAAT 60.080 41.667 0.00 0.00 0.00 2.57
3797 4212 0.105039 CCTAGCCCGAATCACTCACC 59.895 60.000 0.00 0.00 0.00 4.02
3804 4219 4.080687 AGAGTATACACCTAGCCCGAATC 58.919 47.826 5.50 0.00 0.00 2.52
3842 4257 3.737305 GCTTCGTTGAGCTCATTACAAC 58.263 45.455 19.04 11.36 39.57 3.32
3881 4296 4.379302 AGCAGAAGTGGGAGATTCTTTT 57.621 40.909 0.00 0.00 33.51 2.27
3895 4310 4.095483 GTCCATTATGTGACCAAGCAGAAG 59.905 45.833 3.51 0.00 0.00 2.85
3938 4357 5.192327 ACATTTTCTTCAGACAAAGGCAG 57.808 39.130 0.00 0.00 0.00 4.85
3946 4365 7.763172 ATCTCGTCATACATTTTCTTCAGAC 57.237 36.000 0.00 0.00 0.00 3.51
3970 4389 6.403866 TTCTTCAGAAAAAGGCATGCTTTA 57.596 33.333 16.13 0.00 0.00 1.85
3983 4402 4.082787 GGCGTCATCCATTTTCTTCAGAAA 60.083 41.667 0.00 0.00 41.77 2.52
3995 4414 1.995066 TCCCTGTGGCGTCATCCAT 60.995 57.895 0.00 0.00 38.57 3.41
3998 4417 2.509336 CGTCCCTGTGGCGTCATC 60.509 66.667 0.00 0.00 0.00 2.92
4021 4440 4.079096 AGGTAGTAGTTCCTAGTGCTCCAT 60.079 45.833 0.00 0.00 31.66 3.41
4025 4444 4.227754 TCAGAGGTAGTAGTTCCTAGTGCT 59.772 45.833 0.00 0.00 33.83 4.40
4026 4445 4.525024 TCAGAGGTAGTAGTTCCTAGTGC 58.475 47.826 0.00 0.00 33.83 4.40
4027 4446 8.749026 TTATTCAGAGGTAGTAGTTCCTAGTG 57.251 38.462 0.00 0.00 33.83 2.74
4028 4447 8.780003 TCTTATTCAGAGGTAGTAGTTCCTAGT 58.220 37.037 0.00 0.00 33.83 2.57
4029 4448 9.629878 TTCTTATTCAGAGGTAGTAGTTCCTAG 57.370 37.037 0.00 0.00 33.83 3.02
4031 4450 8.919145 CATTCTTATTCAGAGGTAGTAGTTCCT 58.081 37.037 0.00 0.00 36.70 3.36
4032 4451 8.697292 ACATTCTTATTCAGAGGTAGTAGTTCC 58.303 37.037 0.00 0.00 31.12 3.62
4035 4454 9.924010 AGTACATTCTTATTCAGAGGTAGTAGT 57.076 33.333 0.00 0.00 30.55 2.73
4038 4457 9.696572 TGTAGTACATTCTTATTCAGAGGTAGT 57.303 33.333 0.00 0.00 34.03 2.73
4041 4460 9.427821 AGATGTAGTACATTCTTATTCAGAGGT 57.572 33.333 16.80 0.00 39.27 3.85
4063 4482 9.699703 GGCCTAAGACTTCTATTTAGTTAGATG 57.300 37.037 0.00 0.00 32.44 2.90
4064 4483 9.663365 AGGCCTAAGACTTCTATTTAGTTAGAT 57.337 33.333 1.29 0.00 0.00 1.98
4065 4484 9.490083 AAGGCCTAAGACTTCTATTTAGTTAGA 57.510 33.333 5.16 0.00 0.00 2.10
4068 4487 9.809395 AAAAAGGCCTAAGACTTCTATTTAGTT 57.191 29.630 5.16 0.00 0.00 2.24
4216 4635 8.635765 AACATTAGCCTAGACTCAATGAAAAA 57.364 30.769 12.01 0.00 32.29 1.94
4217 4636 8.635765 AAACATTAGCCTAGACTCAATGAAAA 57.364 30.769 12.01 0.00 32.29 2.29
4218 4637 9.905713 ATAAACATTAGCCTAGACTCAATGAAA 57.094 29.630 12.01 0.00 32.29 2.69
4219 4638 9.905713 AATAAACATTAGCCTAGACTCAATGAA 57.094 29.630 12.01 0.00 32.29 2.57
4220 4639 9.905713 AAATAAACATTAGCCTAGACTCAATGA 57.094 29.630 12.01 0.00 32.29 2.57
4224 4643 9.959721 AGAAAAATAAACATTAGCCTAGACTCA 57.040 29.630 0.00 0.00 0.00 3.41
4247 4666 9.439461 TCTTCCTATCCTTCAGATTTCATAGAA 57.561 33.333 0.00 0.00 36.33 2.10
4248 4667 9.439461 TTCTTCCTATCCTTCAGATTTCATAGA 57.561 33.333 0.00 0.00 36.33 1.98
4251 4670 9.571816 GAATTCTTCCTATCCTTCAGATTTCAT 57.428 33.333 0.00 0.00 36.33 2.57
4252 4671 7.995488 GGAATTCTTCCTATCCTTCAGATTTCA 59.005 37.037 5.23 0.00 46.57 2.69
4253 4672 8.389779 GGAATTCTTCCTATCCTTCAGATTTC 57.610 38.462 5.23 0.00 46.57 2.17
4276 4695 4.370776 TGGAATCCTATTCCTGTGAAGGA 58.629 43.478 17.27 0.00 39.31 3.36
4277 4696 4.778213 TGGAATCCTATTCCTGTGAAGG 57.222 45.455 17.27 0.00 39.31 3.46
4278 4697 5.767168 GGAATGGAATCCTATTCCTGTGAAG 59.233 44.000 23.95 0.00 45.66 3.02
4279 4698 5.694995 GGAATGGAATCCTATTCCTGTGAA 58.305 41.667 23.95 0.29 45.66 3.18
4280 4699 5.310409 GGAATGGAATCCTATTCCTGTGA 57.690 43.478 23.95 0.62 45.66 3.58
4291 4710 6.183360 CCCTTTGATTTGTAGGAATGGAATCC 60.183 42.308 0.00 0.00 39.96 3.01
4292 4711 6.683861 GCCCTTTGATTTGTAGGAATGGAATC 60.684 42.308 0.00 0.00 0.00 2.52
4293 4712 5.129320 GCCCTTTGATTTGTAGGAATGGAAT 59.871 40.000 0.00 0.00 0.00 3.01
4294 4713 4.466015 GCCCTTTGATTTGTAGGAATGGAA 59.534 41.667 0.00 0.00 0.00 3.53
4295 4714 4.023291 GCCCTTTGATTTGTAGGAATGGA 58.977 43.478 0.00 0.00 0.00 3.41
4296 4715 4.026052 AGCCCTTTGATTTGTAGGAATGG 58.974 43.478 0.00 0.00 0.00 3.16
4297 4716 4.952335 AGAGCCCTTTGATTTGTAGGAATG 59.048 41.667 0.00 0.00 0.00 2.67
4298 4717 5.198602 AGAGCCCTTTGATTTGTAGGAAT 57.801 39.130 0.00 0.00 0.00 3.01
4299 4718 4.657814 AGAGCCCTTTGATTTGTAGGAA 57.342 40.909 0.00 0.00 0.00 3.36
4300 4719 5.772393 TTAGAGCCCTTTGATTTGTAGGA 57.228 39.130 0.00 0.00 0.00 2.94
4301 4720 5.358160 CCTTTAGAGCCCTTTGATTTGTAGG 59.642 44.000 0.00 0.00 0.00 3.18
4302 4721 6.180472 TCCTTTAGAGCCCTTTGATTTGTAG 58.820 40.000 0.00 0.00 0.00 2.74
4303 4722 6.134535 TCCTTTAGAGCCCTTTGATTTGTA 57.865 37.500 0.00 0.00 0.00 2.41
4304 4723 4.998051 TCCTTTAGAGCCCTTTGATTTGT 58.002 39.130 0.00 0.00 0.00 2.83
4305 4724 5.982890 TTCCTTTAGAGCCCTTTGATTTG 57.017 39.130 0.00 0.00 0.00 2.32
4306 4725 7.559335 AAATTCCTTTAGAGCCCTTTGATTT 57.441 32.000 0.00 0.00 0.00 2.17
4307 4726 7.559335 AAAATTCCTTTAGAGCCCTTTGATT 57.441 32.000 0.00 0.00 0.00 2.57
4308 4727 7.310671 GGAAAAATTCCTTTAGAGCCCTTTGAT 60.311 37.037 1.86 0.00 46.57 2.57
4309 4728 6.014584 GGAAAAATTCCTTTAGAGCCCTTTGA 60.015 38.462 1.86 0.00 46.57 2.69
4310 4729 6.166279 GGAAAAATTCCTTTAGAGCCCTTTG 58.834 40.000 1.86 0.00 46.57 2.77
4311 4730 6.360370 GGAAAAATTCCTTTAGAGCCCTTT 57.640 37.500 1.86 0.00 46.57 3.11
4355 4774 9.807921 TGGTTTAGAGAAATCTTGTAGGAATTT 57.192 29.630 0.00 0.00 0.00 1.82
4356 4775 9.807921 TTGGTTTAGAGAAATCTTGTAGGAATT 57.192 29.630 0.00 0.00 0.00 2.17
4357 4776 9.807921 TTTGGTTTAGAGAAATCTTGTAGGAAT 57.192 29.630 0.00 0.00 0.00 3.01
4358 4777 9.284968 CTTTGGTTTAGAGAAATCTTGTAGGAA 57.715 33.333 0.00 0.00 0.00 3.36
4359 4778 7.883311 CCTTTGGTTTAGAGAAATCTTGTAGGA 59.117 37.037 0.00 0.00 0.00 2.94
4360 4779 7.883311 TCCTTTGGTTTAGAGAAATCTTGTAGG 59.117 37.037 0.00 0.00 0.00 3.18
4361 4780 8.848474 TCCTTTGGTTTAGAGAAATCTTGTAG 57.152 34.615 0.00 0.00 0.00 2.74
4362 4781 7.883311 CCTCCTTTGGTTTAGAGAAATCTTGTA 59.117 37.037 0.00 0.00 0.00 2.41
4363 4782 6.717084 CCTCCTTTGGTTTAGAGAAATCTTGT 59.283 38.462 0.00 0.00 0.00 3.16
4364 4783 6.349694 GCCTCCTTTGGTTTAGAGAAATCTTG 60.350 42.308 0.00 0.00 0.00 3.02
4365 4784 5.712446 GCCTCCTTTGGTTTAGAGAAATCTT 59.288 40.000 0.00 0.00 0.00 2.40
4366 4785 5.257262 GCCTCCTTTGGTTTAGAGAAATCT 58.743 41.667 0.00 0.00 0.00 2.40
4367 4786 4.399618 GGCCTCCTTTGGTTTAGAGAAATC 59.600 45.833 0.00 0.00 0.00 2.17
4368 4787 4.044698 AGGCCTCCTTTGGTTTAGAGAAAT 59.955 41.667 0.00 0.00 0.00 2.17
4369 4788 3.397955 AGGCCTCCTTTGGTTTAGAGAAA 59.602 43.478 0.00 0.00 0.00 2.52
4370 4789 2.986728 AGGCCTCCTTTGGTTTAGAGAA 59.013 45.455 0.00 0.00 0.00 2.87
4371 4790 2.632537 AGGCCTCCTTTGGTTTAGAGA 58.367 47.619 0.00 0.00 0.00 3.10
4372 4791 3.441500 AAGGCCTCCTTTGGTTTAGAG 57.558 47.619 5.23 0.00 41.69 2.43
4373 4792 5.327737 TTTAAGGCCTCCTTTGGTTTAGA 57.672 39.130 5.23 0.00 41.69 2.10
4374 4793 6.605471 AATTTAAGGCCTCCTTTGGTTTAG 57.395 37.500 5.23 0.00 41.69 1.85
4375 4794 7.731235 ACTAAATTTAAGGCCTCCTTTGGTTTA 59.269 33.333 5.23 5.23 41.69 2.01
4376 4795 5.904984 AAATTTAAGGCCTCCTTTGGTTT 57.095 34.783 5.23 0.00 41.69 3.27
4377 4796 6.082031 ACTAAATTTAAGGCCTCCTTTGGTT 58.918 36.000 5.23 0.00 41.69 3.67
4378 4797 5.651303 ACTAAATTTAAGGCCTCCTTTGGT 58.349 37.500 5.23 8.92 41.69 3.67
4379 4798 6.605471 AACTAAATTTAAGGCCTCCTTTGG 57.395 37.500 5.23 8.28 41.69 3.28
4380 4799 7.544622 GGTAACTAAATTTAAGGCCTCCTTTG 58.455 38.462 5.23 0.00 41.69 2.77
4381 4800 6.376299 CGGTAACTAAATTTAAGGCCTCCTTT 59.624 38.462 5.23 6.38 41.69 3.11
4382 4801 5.884232 CGGTAACTAAATTTAAGGCCTCCTT 59.116 40.000 5.23 3.40 46.63 3.36
4383 4802 5.190330 TCGGTAACTAAATTTAAGGCCTCCT 59.810 40.000 5.23 0.00 33.87 3.69
4384 4803 5.430886 TCGGTAACTAAATTTAAGGCCTCC 58.569 41.667 5.23 0.00 0.00 4.30
4385 4804 5.526479 CCTCGGTAACTAAATTTAAGGCCTC 59.474 44.000 5.23 0.00 0.00 4.70
4386 4805 5.434408 CCTCGGTAACTAAATTTAAGGCCT 58.566 41.667 0.00 0.00 0.00 5.19
4387 4806 4.577693 CCCTCGGTAACTAAATTTAAGGCC 59.422 45.833 0.00 0.00 0.00 5.19
4388 4807 5.430886 TCCCTCGGTAACTAAATTTAAGGC 58.569 41.667 0.00 0.00 0.00 4.35
4389 4808 6.647229 ACTCCCTCGGTAACTAAATTTAAGG 58.353 40.000 0.00 1.61 0.00 2.69
4390 4809 9.828039 ATTACTCCCTCGGTAACTAAATTTAAG 57.172 33.333 0.00 0.00 32.92 1.85
4398 4817 8.860088 GGTTTTATATTACTCCCTCGGTAACTA 58.140 37.037 0.00 0.00 32.92 2.24
4399 4818 7.566509 AGGTTTTATATTACTCCCTCGGTAACT 59.433 37.037 0.00 0.00 32.92 2.24
4400 4819 7.730084 AGGTTTTATATTACTCCCTCGGTAAC 58.270 38.462 0.00 0.00 32.92 2.50
4401 4820 7.919385 AGGTTTTATATTACTCCCTCGGTAA 57.081 36.000 0.00 0.00 34.32 2.85
4402 4821 7.919385 AAGGTTTTATATTACTCCCTCGGTA 57.081 36.000 0.00 0.00 0.00 4.02
4403 4822 6.819947 AAGGTTTTATATTACTCCCTCGGT 57.180 37.500 0.00 0.00 0.00 4.69
4404 4823 9.269453 CTAAAAGGTTTTATATTACTCCCTCGG 57.731 37.037 0.00 0.00 32.69 4.63
4407 4826 9.848710 GCTCTAAAAGGTTTTATATTACTCCCT 57.151 33.333 0.00 0.00 32.69 4.20
4408 4827 9.623000 TGCTCTAAAAGGTTTTATATTACTCCC 57.377 33.333 0.00 0.00 32.69 4.30
4415 4834 9.397280 GGAGAGTTGCTCTAAAAGGTTTTATAT 57.603 33.333 0.00 0.00 41.35 0.86
4416 4835 8.380099 TGGAGAGTTGCTCTAAAAGGTTTTATA 58.620 33.333 0.00 0.00 41.35 0.98
4417 4836 7.231467 TGGAGAGTTGCTCTAAAAGGTTTTAT 58.769 34.615 0.00 0.00 41.35 1.40
4418 4837 6.597562 TGGAGAGTTGCTCTAAAAGGTTTTA 58.402 36.000 0.00 0.00 41.35 1.52
4419 4838 5.445964 TGGAGAGTTGCTCTAAAAGGTTTT 58.554 37.500 0.00 0.00 41.35 2.43
4420 4839 5.048846 TGGAGAGTTGCTCTAAAAGGTTT 57.951 39.130 0.00 0.00 41.35 3.27
4421 4840 4.706842 TGGAGAGTTGCTCTAAAAGGTT 57.293 40.909 0.00 0.00 41.35 3.50
4422 4841 4.706842 TTGGAGAGTTGCTCTAAAAGGT 57.293 40.909 0.00 0.00 41.35 3.50
4423 4842 4.397417 CCATTGGAGAGTTGCTCTAAAAGG 59.603 45.833 0.00 0.00 45.57 3.11
4424 4843 4.397417 CCCATTGGAGAGTTGCTCTAAAAG 59.603 45.833 3.62 0.00 45.57 2.27
4425 4844 4.335416 CCCATTGGAGAGTTGCTCTAAAA 58.665 43.478 3.62 0.00 45.57 1.52
4426 4845 3.308402 CCCCATTGGAGAGTTGCTCTAAA 60.308 47.826 3.62 0.00 45.57 1.85
4427 4846 2.239654 CCCCATTGGAGAGTTGCTCTAA 59.760 50.000 3.62 0.00 46.33 2.10
4428 4847 1.839994 CCCCATTGGAGAGTTGCTCTA 59.160 52.381 3.62 0.00 41.35 2.43
4429 4848 0.622665 CCCCATTGGAGAGTTGCTCT 59.377 55.000 3.62 0.00 44.28 4.09
4430 4849 1.034292 GCCCCATTGGAGAGTTGCTC 61.034 60.000 3.62 0.00 43.17 4.26
4431 4850 1.000396 GCCCCATTGGAGAGTTGCT 60.000 57.895 3.62 0.00 35.39 3.91
4432 4851 2.409870 CGCCCCATTGGAGAGTTGC 61.410 63.158 3.62 0.00 35.62 4.17
4433 4852 1.026718 GTCGCCCCATTGGAGAGTTG 61.027 60.000 3.62 0.00 44.30 3.16
4434 4853 1.299976 GTCGCCCCATTGGAGAGTT 59.700 57.895 3.62 0.00 44.30 3.01
4435 4854 2.670148 GGTCGCCCCATTGGAGAGT 61.670 63.158 3.62 0.00 44.30 3.24
4436 4855 2.190578 GGTCGCCCCATTGGAGAG 59.809 66.667 3.62 0.00 44.30 3.20
4437 4856 2.609299 TGGTCGCCCCATTGGAGA 60.609 61.111 3.62 0.00 41.10 3.71
4464 4883 3.131478 GACCCAAACGGATGGCGG 61.131 66.667 3.36 0.00 39.26 6.13
4465 4884 3.496131 CGACCCAAACGGATGGCG 61.496 66.667 3.36 0.00 39.26 5.69
4474 4893 4.931633 TTTCCGCGCCGACCCAAA 62.932 61.111 0.00 0.00 0.00 3.28
4475 4894 4.931633 TTTTCCGCGCCGACCCAA 62.932 61.111 0.00 0.00 0.00 4.12
4476 4895 4.931633 TTTTTCCGCGCCGACCCA 62.932 61.111 0.00 0.00 0.00 4.51
4493 4912 1.006688 GCGTGTTGGGCCGATTTTT 60.007 52.632 0.00 0.00 0.00 1.94
4494 4913 2.648454 GCGTGTTGGGCCGATTTT 59.352 55.556 0.00 0.00 0.00 1.82
4495 4914 3.370231 GGCGTGTTGGGCCGATTT 61.370 61.111 0.00 0.00 41.39 2.17
4502 4921 4.939368 TTGGGTCGGCGTGTTGGG 62.939 66.667 6.85 0.00 0.00 4.12
4503 4922 2.902846 TTTGGGTCGGCGTGTTGG 60.903 61.111 6.85 0.00 0.00 3.77
4504 4923 2.330041 GTTTGGGTCGGCGTGTTG 59.670 61.111 6.85 0.00 0.00 3.33
4505 4924 3.273834 CGTTTGGGTCGGCGTGTT 61.274 61.111 6.85 0.00 0.00 3.32
4507 4926 4.973055 TCCGTTTGGGTCGGCGTG 62.973 66.667 6.85 0.00 46.49 5.34
4508 4927 4.974989 GTCCGTTTGGGTCGGCGT 62.975 66.667 6.85 0.00 46.49 5.68
4509 4928 4.973055 TGTCCGTTTGGGTCGGCG 62.973 66.667 0.00 0.00 46.49 6.46
4510 4929 3.351416 GTGTCCGTTTGGGTCGGC 61.351 66.667 0.00 0.00 46.49 5.54
4512 4931 3.708734 GCGTGTCCGTTTGGGTCG 61.709 66.667 0.00 0.00 37.00 4.79
4513 4932 3.708734 CGCGTGTCCGTTTGGGTC 61.709 66.667 0.00 0.00 37.00 4.46
4514 4933 4.534141 ACGCGTGTCCGTTTGGGT 62.534 61.111 12.93 0.00 38.47 4.51
4515 4934 3.708734 GACGCGTGTCCGTTTGGG 61.709 66.667 20.70 0.00 42.24 4.12
4523 4942 2.166985 CGAAAACGGACGCGTGTC 59.833 61.111 20.70 20.76 44.72 3.67
4524 4943 2.579574 GACGAAAACGGACGCGTGT 61.580 57.895 20.70 6.40 37.07 4.49
4525 4944 2.166985 GACGAAAACGGACGCGTG 59.833 61.111 20.70 5.54 37.07 5.34
4526 4945 3.032033 GGACGAAAACGGACGCGT 61.032 61.111 13.85 13.85 39.99 6.01
4527 4946 4.112256 CGGACGAAAACGGACGCG 62.112 66.667 3.53 3.53 0.00 6.01
4528 4947 4.419957 GCGGACGAAAACGGACGC 62.420 66.667 14.25 14.25 40.19 5.19
4529 4948 3.770424 GGCGGACGAAAACGGACG 61.770 66.667 0.00 0.00 0.00 4.79
4530 4949 2.356673 AGGCGGACGAAAACGGAC 60.357 61.111 0.00 0.00 0.00 4.79
4531 4950 2.356553 CAGGCGGACGAAAACGGA 60.357 61.111 0.00 0.00 0.00 4.69
4532 4951 4.084888 GCAGGCGGACGAAAACGG 62.085 66.667 0.00 0.00 0.00 4.44
4533 4952 4.084888 GGCAGGCGGACGAAAACG 62.085 66.667 0.00 0.00 0.00 3.60
4545 4964 4.856801 CGGGAATGGGTCGGCAGG 62.857 72.222 0.00 0.00 0.00 4.85
4546 4965 4.856801 CCGGGAATGGGTCGGCAG 62.857 72.222 0.00 0.00 37.25 4.85
4550 4969 2.052047 AATAGGCCGGGAATGGGTCG 62.052 60.000 2.18 0.00 33.31 4.79
4551 4970 0.185175 AAATAGGCCGGGAATGGGTC 59.815 55.000 2.18 0.00 0.00 4.46
4552 4971 0.634465 AAAATAGGCCGGGAATGGGT 59.366 50.000 2.18 0.00 0.00 4.51
4553 4972 1.412343 CAAAAATAGGCCGGGAATGGG 59.588 52.381 2.18 0.00 0.00 4.00
4554 4973 2.362077 CTCAAAAATAGGCCGGGAATGG 59.638 50.000 2.18 0.00 0.00 3.16
4555 4974 2.223805 GCTCAAAAATAGGCCGGGAATG 60.224 50.000 2.18 0.00 0.00 2.67
4556 4975 2.031870 GCTCAAAAATAGGCCGGGAAT 58.968 47.619 2.18 0.00 0.00 3.01
4557 4976 1.470051 GCTCAAAAATAGGCCGGGAA 58.530 50.000 2.18 0.00 0.00 3.97
4558 4977 0.395173 GGCTCAAAAATAGGCCGGGA 60.395 55.000 2.18 0.00 35.08 5.14
4559 4978 2.115510 GGCTCAAAAATAGGCCGGG 58.884 57.895 2.18 0.00 35.08 5.73
4562 4981 1.692411 ATCCGGCTCAAAAATAGGCC 58.308 50.000 0.00 0.00 41.02 5.19
4563 4982 3.447742 CAAATCCGGCTCAAAAATAGGC 58.552 45.455 0.00 0.00 36.24 3.93
4564 4983 3.119173 TGCAAATCCGGCTCAAAAATAGG 60.119 43.478 0.00 0.00 0.00 2.57
4565 4984 4.108699 TGCAAATCCGGCTCAAAAATAG 57.891 40.909 0.00 0.00 0.00 1.73
4566 4985 4.681744 GATGCAAATCCGGCTCAAAAATA 58.318 39.130 0.00 0.00 0.00 1.40
4567 4986 3.524541 GATGCAAATCCGGCTCAAAAAT 58.475 40.909 0.00 0.00 0.00 1.82
4568 4987 2.958213 GATGCAAATCCGGCTCAAAAA 58.042 42.857 0.00 0.00 0.00 1.94
4569 4988 2.652941 GATGCAAATCCGGCTCAAAA 57.347 45.000 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.