Multiple sequence alignment - TraesCS4A01G093100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G093100 chr4A 100.000 3663 0 0 1 3663 100637136 100633474 0.000000e+00 6765.0
1 TraesCS4A01G093100 chr4D 96.016 2058 55 7 776 2823 364810847 364812887 0.000000e+00 3321.0
2 TraesCS4A01G093100 chr4D 94.550 367 19 1 2911 3277 364812883 364813248 1.910000e-157 566.0
3 TraesCS4A01G093100 chr4D 84.262 610 60 18 20 594 364810247 364810855 2.470000e-156 562.0
4 TraesCS4A01G093100 chr4B 95.853 1905 51 12 820 2704 449766658 449768554 0.000000e+00 3055.0
5 TraesCS4A01G093100 chr4B 93.634 487 25 1 2910 3396 449773666 449774146 0.000000e+00 723.0
6 TraesCS4A01G093100 chr4B 96.000 225 9 0 3439 3663 449774239 449774463 2.080000e-97 366.0
7 TraesCS4A01G093100 chr4B 94.444 144 8 0 2695 2838 449773525 449773668 4.760000e-54 222.0
8 TraesCS4A01G093100 chr5A 96.257 187 6 1 593 778 71460388 71460202 4.600000e-79 305.0
9 TraesCS4A01G093100 chr5A 96.196 184 5 1 594 775 29678149 29678332 2.140000e-77 300.0
10 TraesCS4A01G093100 chr5A 96.133 181 6 1 595 775 101083274 101083453 9.950000e-76 294.0
11 TraesCS4A01G093100 chr5A 95.028 181 7 2 600 779 362414725 362414546 2.150000e-72 283.0
12 TraesCS4A01G093100 chr3A 95.652 184 8 0 595 778 288535825 288535642 2.770000e-76 296.0
13 TraesCS4A01G093100 chr3A 94.972 179 9 0 595 773 12118437 12118259 7.740000e-72 281.0
14 TraesCS4A01G093100 chr6A 94.709 189 8 2 588 775 494463092 494463279 3.580000e-75 292.0
15 TraesCS4A01G093100 chr6A 92.821 195 8 5 588 780 45782678 45782868 1.000000e-70 278.0
16 TraesCS4A01G093100 chr6A 94.413 179 9 1 598 775 537876442 537876264 1.300000e-69 274.0
17 TraesCS4A01G093100 chr7A 76.991 226 36 11 384 594 126121996 126121772 8.310000e-22 115.0
18 TraesCS4A01G093100 chr7B 94.737 38 2 0 2835 2872 746758683 746758720 3.950000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G093100 chr4A 100633474 100637136 3662 True 6765 6765 100.000000 1 3663 1 chr4A.!!$R1 3662
1 TraesCS4A01G093100 chr4D 364810247 364813248 3001 False 1483 3321 91.609333 20 3277 3 chr4D.!!$F1 3257
2 TraesCS4A01G093100 chr4B 449766658 449768554 1896 False 3055 3055 95.853000 820 2704 1 chr4B.!!$F1 1884
3 TraesCS4A01G093100 chr4B 449773525 449774463 938 False 437 723 94.692667 2695 3663 3 chr4B.!!$F2 968

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 461 0.034337 TGTCCCAGGTTTAGTGACGC 59.966 55.0 0.00 0.0 0.00 5.19 F
453 464 0.108329 CCCAGGTTTAGTGACGCGAT 60.108 55.0 15.93 0.0 0.00 4.58 F
776 811 0.784495 TGTGTCCTAGACAGACCCCT 59.216 55.0 0.00 0.0 43.57 4.79 F
2016 2064 0.595053 CCGGCTACTGCATGTACTCG 60.595 60.0 0.00 0.0 41.91 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1609 0.179094 TGCTGTTGGACGTTCGTCTT 60.179 50.0 21.52 0.00 35.64 3.01 R
2016 2064 1.142778 GCACGAAGATGACCGAGCTC 61.143 60.0 2.73 2.73 38.85 4.09 R
2510 2567 0.725784 GACCTGCACAAAACGCATCG 60.726 55.0 0.00 0.00 39.02 3.84 R
3038 3116 0.034477 ATAAGTGGAGGCCAAACCCG 60.034 55.0 5.01 0.00 40.58 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.135493 GAGCAGAAACGCCGCGTC 62.135 66.667 20.46 7.76 39.99 5.19
21 22 4.612412 AGAAACGCCGCGTCCCAA 62.612 61.111 20.46 0.00 39.99 4.12
29 30 2.625823 CCGCGTCCCAACAAATGCT 61.626 57.895 4.92 0.00 0.00 3.79
52 53 8.350722 TGCTAATGTTACGTTTGATTTGGTAAA 58.649 29.630 0.00 0.00 0.00 2.01
112 113 6.764308 AGAAATCTTTGTGGTCCATATGTG 57.236 37.500 1.24 0.00 0.00 3.21
124 125 6.697019 GTGGTCCATATGTGCATAATTTGTTC 59.303 38.462 1.24 0.00 0.00 3.18
202 203 1.664649 TTCGACAGAAGCTGCCACG 60.665 57.895 0.00 0.00 34.37 4.94
209 210 1.137086 CAGAAGCTGCCACGTACCTAT 59.863 52.381 0.00 0.00 0.00 2.57
290 291 6.877611 TCAATTCCAGAAGTTGTAAGTTCC 57.122 37.500 8.22 0.00 38.77 3.62
293 294 5.534207 TTCCAGAAGTTGTAAGTTCCGTA 57.466 39.130 8.22 0.00 38.77 4.02
295 296 5.535333 TCCAGAAGTTGTAAGTTCCGTAAG 58.465 41.667 8.22 0.00 38.77 2.34
309 310 6.579865 AGTTCCGTAAGACCTGTAATATTGG 58.420 40.000 0.00 0.00 43.02 3.16
317 318 3.486383 ACCTGTAATATTGGCCCAATCG 58.514 45.455 13.36 0.00 35.54 3.34
340 341 4.706842 AGACCCAAGTTTCTTGAGCTAA 57.293 40.909 10.54 0.00 0.00 3.09
382 393 3.356290 AGTAATTTAGCTTGCACCCTGG 58.644 45.455 0.00 0.00 0.00 4.45
394 405 0.889186 CACCCTGGTAAGTGCCACAC 60.889 60.000 0.00 0.00 34.36 3.82
396 407 1.369692 CCTGGTAAGTGCCACACGA 59.630 57.895 0.00 0.00 39.64 4.35
407 418 4.063529 CACACGAGTGGCACCAAT 57.936 55.556 15.27 0.00 42.13 3.16
449 460 2.536761 TTGTCCCAGGTTTAGTGACG 57.463 50.000 0.00 0.00 0.00 4.35
450 461 0.034337 TGTCCCAGGTTTAGTGACGC 59.966 55.000 0.00 0.00 0.00 5.19
453 464 0.108329 CCCAGGTTTAGTGACGCGAT 60.108 55.000 15.93 0.00 0.00 4.58
461 472 2.475200 TAGTGACGCGATGATGACAG 57.525 50.000 15.93 0.00 0.00 3.51
462 473 0.803768 AGTGACGCGATGATGACAGC 60.804 55.000 15.93 0.00 0.00 4.40
470 481 3.542875 CGCGATGATGACAGCTTTAGTTG 60.543 47.826 0.00 0.00 0.00 3.16
497 529 4.101430 AGCATGACAACCTTTTTGAATGGT 59.899 37.500 0.00 0.00 40.34 3.55
504 536 8.097662 TGACAACCTTTTTGAATGGTAAGTTTT 58.902 29.630 0.00 0.00 37.90 2.43
506 538 9.373603 ACAACCTTTTTGAATGGTAAGTTTTAC 57.626 29.630 0.00 0.00 37.90 2.01
508 540 9.811995 AACCTTTTTGAATGGTAAGTTTTACTC 57.188 29.630 0.00 0.00 37.90 2.59
510 542 9.678941 CCTTTTTGAATGGTAAGTTTTACTCTC 57.321 33.333 0.00 0.00 0.00 3.20
556 590 8.697846 ACAACTTAGTTTTTAAAAAGTCAGGC 57.302 30.769 23.82 10.19 33.79 4.85
558 592 7.412853 ACTTAGTTTTTAAAAAGTCAGGCCA 57.587 32.000 23.82 7.96 33.79 5.36
559 593 7.842982 ACTTAGTTTTTAAAAAGTCAGGCCAA 58.157 30.769 23.82 13.25 33.79 4.52
566 601 1.780503 AAAGTCAGGCCAAAGTGCTT 58.219 45.000 5.01 0.00 0.00 3.91
571 606 1.148273 AGGCCAAAGTGCTTCGTGA 59.852 52.632 5.01 0.00 0.00 4.35
595 630 4.627058 ACACGTGTGACACTTATCATTCA 58.373 39.130 22.71 0.00 31.34 2.57
596 631 4.686091 ACACGTGTGACACTTATCATTCAG 59.314 41.667 22.71 0.00 31.34 3.02
597 632 4.686091 CACGTGTGACACTTATCATTCAGT 59.314 41.667 14.42 0.00 31.34 3.41
598 633 5.177511 CACGTGTGACACTTATCATTCAGTT 59.822 40.000 14.42 0.00 31.34 3.16
599 634 5.758296 ACGTGTGACACTTATCATTCAGTTT 59.242 36.000 14.42 0.00 31.34 2.66
600 635 6.073369 CGTGTGACACTTATCATTCAGTTTG 58.927 40.000 14.42 0.00 31.34 2.93
601 636 6.292865 CGTGTGACACTTATCATTCAGTTTGT 60.293 38.462 14.42 0.00 31.34 2.83
602 637 7.072030 GTGTGACACTTATCATTCAGTTTGTC 58.928 38.462 8.76 0.00 0.00 3.18
603 638 6.992123 TGTGACACTTATCATTCAGTTTGTCT 59.008 34.615 7.20 0.00 0.00 3.41
604 639 8.147704 TGTGACACTTATCATTCAGTTTGTCTA 58.852 33.333 7.20 0.00 0.00 2.59
605 640 8.988934 GTGACACTTATCATTCAGTTTGTCTAA 58.011 33.333 0.00 0.00 0.00 2.10
606 641 9.725019 TGACACTTATCATTCAGTTTGTCTAAT 57.275 29.630 0.00 0.00 0.00 1.73
614 649 8.853077 TCATTCAGTTTGTCTAATTCACATCT 57.147 30.769 0.00 0.00 0.00 2.90
615 650 9.942850 TCATTCAGTTTGTCTAATTCACATCTA 57.057 29.630 0.00 0.00 0.00 1.98
646 681 8.561738 TTTTTAAGGATGTCACATCTAACCTC 57.438 34.615 17.46 0.00 0.00 3.85
647 682 4.762289 AAGGATGTCACATCTAACCTCC 57.238 45.455 17.46 0.18 32.24 4.30
648 683 3.041946 AGGATGTCACATCTAACCTCCC 58.958 50.000 17.46 0.00 32.42 4.30
649 684 2.771943 GGATGTCACATCTAACCTCCCA 59.228 50.000 17.46 0.00 0.00 4.37
650 685 3.432326 GGATGTCACATCTAACCTCCCAC 60.432 52.174 17.46 0.00 0.00 4.61
651 686 2.615391 TGTCACATCTAACCTCCCACA 58.385 47.619 0.00 0.00 0.00 4.17
652 687 2.976185 TGTCACATCTAACCTCCCACAA 59.024 45.455 0.00 0.00 0.00 3.33
653 688 3.007940 TGTCACATCTAACCTCCCACAAG 59.992 47.826 0.00 0.00 0.00 3.16
654 689 3.008049 GTCACATCTAACCTCCCACAAGT 59.992 47.826 0.00 0.00 0.00 3.16
655 690 4.222145 GTCACATCTAACCTCCCACAAGTA 59.778 45.833 0.00 0.00 0.00 2.24
656 691 5.030147 TCACATCTAACCTCCCACAAGTAT 58.970 41.667 0.00 0.00 0.00 2.12
657 692 6.097839 GTCACATCTAACCTCCCACAAGTATA 59.902 42.308 0.00 0.00 0.00 1.47
658 693 6.844388 TCACATCTAACCTCCCACAAGTATAT 59.156 38.462 0.00 0.00 0.00 0.86
659 694 8.008332 TCACATCTAACCTCCCACAAGTATATA 58.992 37.037 0.00 0.00 0.00 0.86
660 695 8.647796 CACATCTAACCTCCCACAAGTATATAA 58.352 37.037 0.00 0.00 0.00 0.98
661 696 9.393786 ACATCTAACCTCCCACAAGTATATAAT 57.606 33.333 0.00 0.00 0.00 1.28
662 697 9.658799 CATCTAACCTCCCACAAGTATATAATG 57.341 37.037 0.00 0.00 0.00 1.90
663 698 7.676947 TCTAACCTCCCACAAGTATATAATGC 58.323 38.462 0.00 0.00 0.00 3.56
664 699 5.904984 ACCTCCCACAAGTATATAATGCA 57.095 39.130 0.00 0.00 0.00 3.96
665 700 6.454223 ACCTCCCACAAGTATATAATGCAT 57.546 37.500 0.00 0.00 0.00 3.96
666 701 6.476378 ACCTCCCACAAGTATATAATGCATC 58.524 40.000 0.00 0.00 0.00 3.91
667 702 6.044287 ACCTCCCACAAGTATATAATGCATCA 59.956 38.462 0.00 0.00 0.00 3.07
668 703 6.942005 CCTCCCACAAGTATATAATGCATCAA 59.058 38.462 0.00 0.00 0.00 2.57
669 704 7.613022 CCTCCCACAAGTATATAATGCATCAAT 59.387 37.037 0.00 0.00 0.00 2.57
670 705 9.671279 CTCCCACAAGTATATAATGCATCAATA 57.329 33.333 0.00 1.68 0.00 1.90
718 753 7.639113 AAAAATAGACCACAAACAGAGTGAA 57.361 32.000 0.00 0.00 39.30 3.18
719 754 7.639113 AAAATAGACCACAAACAGAGTGAAA 57.361 32.000 0.00 0.00 39.30 2.69
720 755 7.639113 AAATAGACCACAAACAGAGTGAAAA 57.361 32.000 0.00 0.00 39.30 2.29
721 756 7.823745 AATAGACCACAAACAGAGTGAAAAT 57.176 32.000 0.00 0.00 39.30 1.82
722 757 5.757850 AGACCACAAACAGAGTGAAAATC 57.242 39.130 0.00 0.00 39.30 2.17
723 758 5.192927 AGACCACAAACAGAGTGAAAATCA 58.807 37.500 0.00 0.00 39.30 2.57
724 759 5.297776 AGACCACAAACAGAGTGAAAATCAG 59.702 40.000 0.00 0.00 39.30 2.90
725 760 4.949856 ACCACAAACAGAGTGAAAATCAGT 59.050 37.500 0.00 0.00 39.30 3.41
726 761 5.418840 ACCACAAACAGAGTGAAAATCAGTT 59.581 36.000 0.00 0.00 42.40 3.16
728 763 7.122055 ACCACAAACAGAGTGAAAATCAGTTTA 59.878 33.333 0.00 0.00 46.29 2.01
729 764 7.645340 CCACAAACAGAGTGAAAATCAGTTTAG 59.355 37.037 0.00 0.00 46.29 1.85
730 765 8.397906 CACAAACAGAGTGAAAATCAGTTTAGA 58.602 33.333 0.00 0.00 46.29 2.10
731 766 9.125026 ACAAACAGAGTGAAAATCAGTTTAGAT 57.875 29.630 0.00 0.00 46.29 1.98
761 796 9.890629 ACATAACTATGTCACATTTAGATGTGT 57.109 29.630 21.89 9.11 45.57 3.72
772 807 6.868622 ACATTTAGATGTGTCCTAGACAGAC 58.131 40.000 0.00 0.00 44.64 3.51
773 808 5.916661 TTTAGATGTGTCCTAGACAGACC 57.083 43.478 0.00 0.00 43.57 3.85
774 809 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
775 810 1.757699 GATGTGTCCTAGACAGACCCC 59.242 57.143 0.00 0.00 43.57 4.95
776 811 0.784495 TGTGTCCTAGACAGACCCCT 59.216 55.000 0.00 0.00 43.57 4.79
777 812 1.149288 TGTGTCCTAGACAGACCCCTT 59.851 52.381 0.00 0.00 43.57 3.95
778 813 2.380932 TGTGTCCTAGACAGACCCCTTA 59.619 50.000 0.00 0.00 43.57 2.69
779 814 3.012502 TGTGTCCTAGACAGACCCCTTAT 59.987 47.826 0.00 0.00 43.57 1.73
780 815 3.637694 GTGTCCTAGACAGACCCCTTATC 59.362 52.174 0.00 0.00 43.57 1.75
781 816 3.271225 TGTCCTAGACAGACCCCTTATCA 59.729 47.826 0.00 0.00 37.67 2.15
782 817 4.078571 TGTCCTAGACAGACCCCTTATCAT 60.079 45.833 0.00 0.00 37.67 2.45
783 818 4.902448 GTCCTAGACAGACCCCTTATCATT 59.098 45.833 0.00 0.00 32.09 2.57
797 832 6.898521 CCCCTTATCATTTGGGTTTACCTTTA 59.101 38.462 0.00 0.00 41.11 1.85
798 833 7.069455 CCCCTTATCATTTGGGTTTACCTTTAG 59.931 40.741 0.00 0.00 41.11 1.85
803 838 5.644636 TCATTTGGGTTTACCTTTAGTAGCG 59.355 40.000 0.00 0.00 41.11 4.26
810 845 1.406903 ACCTTTAGTAGCGGGCGTAT 58.593 50.000 0.00 0.00 0.00 3.06
811 846 1.068127 ACCTTTAGTAGCGGGCGTATG 59.932 52.381 0.00 0.00 0.00 2.39
812 847 1.137513 CTTTAGTAGCGGGCGTATGC 58.862 55.000 0.00 0.00 41.71 3.14
866 901 8.966194 GTATATAAGGCGTTTTAGAGACTTGAC 58.034 37.037 0.00 0.00 0.00 3.18
912 947 9.197694 CACGAAATATCTAATCTCCAAAGGTAG 57.802 37.037 0.00 0.00 0.00 3.18
914 949 8.368668 CGAAATATCTAATCTCCAAAGGTAGGT 58.631 37.037 0.00 0.00 0.00 3.08
937 972 1.803519 CAGACTGAAGCGAGCGACC 60.804 63.158 0.00 0.00 0.00 4.79
1195 1230 4.883354 CTCCAATGCCGCCTCCCC 62.883 72.222 0.00 0.00 0.00 4.81
1264 1299 2.990395 AATGTGCGGTGCATGGCA 60.990 55.556 10.19 10.19 41.91 4.92
1543 1578 4.157289 GTCATCTCCAACGAGGTAAGTACA 59.843 45.833 0.00 0.00 39.02 2.90
1544 1579 4.954202 TCATCTCCAACGAGGTAAGTACAT 59.046 41.667 0.00 0.00 39.02 2.29
1545 1580 6.039047 GTCATCTCCAACGAGGTAAGTACATA 59.961 42.308 0.00 0.00 39.02 2.29
1578 1621 3.904234 GCAAATTAACAAGACGAACGTCC 59.096 43.478 20.97 6.28 45.59 4.79
1652 1700 3.618780 CTGCCTGAGGTGGAGTGGC 62.619 68.421 0.00 0.00 43.49 5.01
1882 1930 1.838073 TTCCCCTTCTCCTTCCGCAC 61.838 60.000 0.00 0.00 0.00 5.34
1883 1931 2.269241 CCCTTCTCCTTCCGCACC 59.731 66.667 0.00 0.00 0.00 5.01
1884 1932 2.269241 CCTTCTCCTTCCGCACCC 59.731 66.667 0.00 0.00 0.00 4.61
1885 1933 2.125512 CTTCTCCTTCCGCACCCG 60.126 66.667 0.00 0.00 0.00 5.28
1922 1970 2.997485 AACAGAAATTTGCTCGCCTC 57.003 45.000 0.00 0.00 0.00 4.70
2016 2064 0.595053 CCGGCTACTGCATGTACTCG 60.595 60.000 0.00 0.00 41.91 4.18
2470 2520 7.064609 GCTTGTATGAAATCACTAGTGCACTTA 59.935 37.037 27.06 10.10 0.00 2.24
2471 2521 8.479313 TTGTATGAAATCACTAGTGCACTTAG 57.521 34.615 27.06 20.65 0.00 2.18
2483 2540 1.003851 GCACTTAGAATGCGCGGTTA 58.996 50.000 8.83 0.00 32.45 2.85
2501 2558 6.363473 GCGGTTAAATTGGAGATCTTAATCG 58.637 40.000 9.78 9.78 39.62 3.34
2510 2567 5.175859 TGGAGATCTTAATCGGTTGTTGTC 58.824 41.667 0.00 0.00 36.97 3.18
2620 2677 3.759618 AGAGTAGAACAAGAACGAGGGAG 59.240 47.826 0.00 0.00 0.00 4.30
2621 2678 2.826725 AGTAGAACAAGAACGAGGGAGG 59.173 50.000 0.00 0.00 0.00 4.30
2622 2679 0.977395 AGAACAAGAACGAGGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
2623 2680 0.974383 GAACAAGAACGAGGGAGGGA 59.026 55.000 0.00 0.00 0.00 4.20
2789 2849 4.584394 CGAAAAGGTTATAATGGTGTCGC 58.416 43.478 0.00 0.00 0.00 5.19
2795 2855 3.131396 GTTATAATGGTGTCGCTCCCAG 58.869 50.000 0.00 0.00 33.39 4.45
2802 2862 2.193532 TGTCGCTCCCAGACATCTC 58.806 57.895 0.00 0.00 42.91 2.75
2805 2865 0.820226 TCGCTCCCAGACATCTCAAG 59.180 55.000 0.00 0.00 0.00 3.02
2823 2901 5.067674 TCTCAAGACACCATGAAAAACCAAG 59.932 40.000 0.00 0.00 0.00 3.61
2824 2902 4.709397 TCAAGACACCATGAAAAACCAAGT 59.291 37.500 0.00 0.00 0.00 3.16
2825 2903 4.654091 AGACACCATGAAAAACCAAGTG 57.346 40.909 0.00 0.00 33.35 3.16
2826 2904 4.023291 AGACACCATGAAAAACCAAGTGT 58.977 39.130 0.00 0.00 39.06 3.55
2827 2905 4.097892 AGACACCATGAAAAACCAAGTGTC 59.902 41.667 14.46 14.46 45.17 3.67
2828 2906 4.023291 ACACCATGAAAAACCAAGTGTCT 58.977 39.130 0.00 0.00 34.55 3.41
2829 2907 4.142182 ACACCATGAAAAACCAAGTGTCTG 60.142 41.667 0.00 0.00 34.55 3.51
2830 2908 4.023291 ACCATGAAAAACCAAGTGTCTGT 58.977 39.130 0.00 0.00 0.00 3.41
2831 2909 4.466015 ACCATGAAAAACCAAGTGTCTGTT 59.534 37.500 0.00 0.00 0.00 3.16
2832 2910 5.046663 ACCATGAAAAACCAAGTGTCTGTTT 60.047 36.000 0.00 0.00 33.86 2.83
2833 2911 6.153680 ACCATGAAAAACCAAGTGTCTGTTTA 59.846 34.615 0.00 0.00 32.26 2.01
2834 2912 7.038659 CCATGAAAAACCAAGTGTCTGTTTAA 58.961 34.615 0.00 0.00 32.26 1.52
2835 2913 7.710475 CCATGAAAAACCAAGTGTCTGTTTAAT 59.290 33.333 0.00 0.00 32.26 1.40
2836 2914 9.743057 CATGAAAAACCAAGTGTCTGTTTAATA 57.257 29.630 0.00 0.00 32.26 0.98
2837 2915 9.744468 ATGAAAAACCAAGTGTCTGTTTAATAC 57.256 29.630 0.00 0.00 32.26 1.89
2838 2916 8.962679 TGAAAAACCAAGTGTCTGTTTAATACT 58.037 29.630 0.00 0.00 32.26 2.12
2839 2917 9.447040 GAAAAACCAAGTGTCTGTTTAATACTC 57.553 33.333 0.00 0.00 32.26 2.59
2840 2918 8.747538 AAAACCAAGTGTCTGTTTAATACTCT 57.252 30.769 0.00 0.00 32.26 3.24
2841 2919 7.964604 AACCAAGTGTCTGTTTAATACTCTC 57.035 36.000 0.00 0.00 0.00 3.20
2842 2920 7.304497 ACCAAGTGTCTGTTTAATACTCTCT 57.696 36.000 0.00 0.00 0.00 3.10
2843 2921 7.736893 ACCAAGTGTCTGTTTAATACTCTCTT 58.263 34.615 0.00 0.00 0.00 2.85
2844 2922 7.873505 ACCAAGTGTCTGTTTAATACTCTCTTC 59.126 37.037 0.00 0.00 0.00 2.87
2845 2923 7.062371 CCAAGTGTCTGTTTAATACTCTCTTCG 59.938 40.741 0.00 0.00 0.00 3.79
2846 2924 7.216973 AGTGTCTGTTTAATACTCTCTTCGT 57.783 36.000 0.00 0.00 0.00 3.85
2847 2925 7.306953 AGTGTCTGTTTAATACTCTCTTCGTC 58.693 38.462 0.00 0.00 0.00 4.20
2848 2926 6.527372 GTGTCTGTTTAATACTCTCTTCGTCC 59.473 42.308 0.00 0.00 0.00 4.79
2849 2927 5.738225 GTCTGTTTAATACTCTCTTCGTCCG 59.262 44.000 0.00 0.00 0.00 4.79
2850 2928 5.645067 TCTGTTTAATACTCTCTTCGTCCGA 59.355 40.000 0.00 0.00 0.00 4.55
2851 2929 6.149973 TCTGTTTAATACTCTCTTCGTCCGAA 59.850 38.462 1.81 1.81 0.00 4.30
2852 2930 6.680810 TGTTTAATACTCTCTTCGTCCGAAA 58.319 36.000 3.52 0.00 33.34 3.46
2853 2931 7.147312 TGTTTAATACTCTCTTCGTCCGAAAA 58.853 34.615 3.52 0.00 33.34 2.29
2854 2932 7.652909 TGTTTAATACTCTCTTCGTCCGAAAAA 59.347 33.333 3.52 0.00 33.34 1.94
2855 2933 7.807687 TTAATACTCTCTTCGTCCGAAAAAG 57.192 36.000 3.52 4.72 33.34 2.27
2856 2934 3.729862 ACTCTCTTCGTCCGAAAAAGT 57.270 42.857 3.52 4.79 33.34 2.66
2857 2935 4.056092 ACTCTCTTCGTCCGAAAAAGTT 57.944 40.909 3.52 0.00 33.34 2.66
2858 2936 4.439968 ACTCTCTTCGTCCGAAAAAGTTT 58.560 39.130 3.52 0.00 33.34 2.66
2859 2937 4.270325 ACTCTCTTCGTCCGAAAAAGTTTG 59.730 41.667 3.52 3.37 33.34 2.93
2860 2938 4.186159 TCTCTTCGTCCGAAAAAGTTTGT 58.814 39.130 3.52 0.00 33.34 2.83
2861 2939 4.269363 TCTCTTCGTCCGAAAAAGTTTGTC 59.731 41.667 3.52 0.00 33.34 3.18
2862 2940 4.186159 TCTTCGTCCGAAAAAGTTTGTCT 58.814 39.130 4.29 0.00 33.34 3.41
2863 2941 4.269363 TCTTCGTCCGAAAAAGTTTGTCTC 59.731 41.667 4.29 0.00 33.34 3.36
2864 2942 3.523547 TCGTCCGAAAAAGTTTGTCTCA 58.476 40.909 4.29 0.00 0.00 3.27
2865 2943 3.933955 TCGTCCGAAAAAGTTTGTCTCAA 59.066 39.130 4.29 0.00 0.00 3.02
2866 2944 4.573201 TCGTCCGAAAAAGTTTGTCTCAAT 59.427 37.500 4.29 0.00 0.00 2.57
2867 2945 4.904154 CGTCCGAAAAAGTTTGTCTCAATC 59.096 41.667 4.29 0.00 0.00 2.67
2868 2946 5.277345 CGTCCGAAAAAGTTTGTCTCAATCT 60.277 40.000 4.29 0.00 0.00 2.40
2869 2947 6.495706 GTCCGAAAAAGTTTGTCTCAATCTT 58.504 36.000 4.29 0.00 0.00 2.40
2870 2948 6.414987 GTCCGAAAAAGTTTGTCTCAATCTTG 59.585 38.462 4.29 0.00 0.00 3.02
2871 2949 6.094881 TCCGAAAAAGTTTGTCTCAATCTTGT 59.905 34.615 4.29 0.29 0.00 3.16
2872 2950 6.414987 CCGAAAAAGTTTGTCTCAATCTTGTC 59.585 38.462 4.29 6.77 0.00 3.18
2873 2951 6.966632 CGAAAAAGTTTGTCTCAATCTTGTCA 59.033 34.615 4.29 0.00 0.00 3.58
2874 2952 7.645340 CGAAAAAGTTTGTCTCAATCTTGTCAT 59.355 33.333 4.29 0.00 0.00 3.06
2875 2953 8.862550 AAAAAGTTTGTCTCAATCTTGTCATC 57.137 30.769 6.58 0.00 0.00 2.92
2876 2954 7.572523 AAAGTTTGTCTCAATCTTGTCATCA 57.427 32.000 6.58 0.00 0.00 3.07
2877 2955 7.756395 AAGTTTGTCTCAATCTTGTCATCAT 57.244 32.000 5.40 0.00 0.00 2.45
2878 2956 7.756395 AGTTTGTCTCAATCTTGTCATCATT 57.244 32.000 0.00 0.00 0.00 2.57
2879 2957 8.174733 AGTTTGTCTCAATCTTGTCATCATTT 57.825 30.769 0.00 0.00 0.00 2.32
2880 2958 8.080417 AGTTTGTCTCAATCTTGTCATCATTTG 58.920 33.333 0.00 0.00 0.00 2.32
2881 2959 7.748691 TTGTCTCAATCTTGTCATCATTTGA 57.251 32.000 0.00 0.00 0.00 2.69
2882 2960 7.373778 TGTCTCAATCTTGTCATCATTTGAG 57.626 36.000 0.00 0.00 40.72 3.02
2883 2961 6.373495 TGTCTCAATCTTGTCATCATTTGAGG 59.627 38.462 9.76 0.00 40.12 3.86
2884 2962 5.884232 TCTCAATCTTGTCATCATTTGAGGG 59.116 40.000 9.76 0.00 40.12 4.30
2885 2963 5.818887 TCAATCTTGTCATCATTTGAGGGA 58.181 37.500 0.00 0.00 34.17 4.20
2886 2964 5.649395 TCAATCTTGTCATCATTTGAGGGAC 59.351 40.000 7.74 7.74 34.17 4.46
2887 2965 4.639078 TCTTGTCATCATTTGAGGGACA 57.361 40.909 11.58 11.58 39.17 4.02
2888 2966 4.326826 TCTTGTCATCATTTGAGGGACAC 58.673 43.478 14.01 0.00 40.00 3.67
2889 2967 3.786368 TGTCATCATTTGAGGGACACA 57.214 42.857 11.58 0.00 37.37 3.72
2890 2968 4.305539 TGTCATCATTTGAGGGACACAT 57.694 40.909 11.58 0.00 37.37 3.21
2891 2969 4.665451 TGTCATCATTTGAGGGACACATT 58.335 39.130 11.58 0.00 37.37 2.71
2892 2970 5.078949 TGTCATCATTTGAGGGACACATTT 58.921 37.500 11.58 0.00 37.37 2.32
2893 2971 5.539574 TGTCATCATTTGAGGGACACATTTT 59.460 36.000 11.58 0.00 37.37 1.82
2894 2972 6.095377 GTCATCATTTGAGGGACACATTTTC 58.905 40.000 9.16 0.00 34.17 2.29
2895 2973 6.012113 TCATCATTTGAGGGACACATTTTCT 58.988 36.000 0.00 0.00 0.00 2.52
2896 2974 5.964958 TCATTTGAGGGACACATTTTCTC 57.035 39.130 0.00 0.00 0.00 2.87
2897 2975 4.455533 TCATTTGAGGGACACATTTTCTCG 59.544 41.667 0.00 0.00 0.00 4.04
2898 2976 2.472695 TGAGGGACACATTTTCTCGG 57.527 50.000 0.00 0.00 0.00 4.63
2899 2977 1.974957 TGAGGGACACATTTTCTCGGA 59.025 47.619 0.00 0.00 0.00 4.55
2900 2978 2.289444 TGAGGGACACATTTTCTCGGAC 60.289 50.000 0.00 0.00 0.00 4.79
2901 2979 1.076332 GGGACACATTTTCTCGGACG 58.924 55.000 0.00 0.00 0.00 4.79
2902 2980 1.337447 GGGACACATTTTCTCGGACGA 60.337 52.381 0.00 0.00 0.00 4.20
2903 2981 2.409975 GGACACATTTTCTCGGACGAA 58.590 47.619 0.00 0.00 0.00 3.85
2904 2982 2.412089 GGACACATTTTCTCGGACGAAG 59.588 50.000 0.00 0.00 0.00 3.79
2905 2983 2.412089 GACACATTTTCTCGGACGAAGG 59.588 50.000 0.00 0.00 0.00 3.46
2906 2984 1.732259 CACATTTTCTCGGACGAAGGG 59.268 52.381 0.00 0.00 0.00 3.95
2907 2985 1.621814 ACATTTTCTCGGACGAAGGGA 59.378 47.619 0.00 0.00 0.00 4.20
2908 2986 2.271800 CATTTTCTCGGACGAAGGGAG 58.728 52.381 0.00 0.00 0.00 4.30
2909 2987 1.335145 TTTTCTCGGACGAAGGGAGT 58.665 50.000 0.00 0.00 0.00 3.85
2910 2988 2.205022 TTTCTCGGACGAAGGGAGTA 57.795 50.000 0.00 0.00 0.00 2.59
2911 2989 1.457346 TTCTCGGACGAAGGGAGTAC 58.543 55.000 0.00 0.00 0.00 2.73
2912 2990 0.393537 TCTCGGACGAAGGGAGTACC 60.394 60.000 0.00 0.00 40.67 3.34
2913 2991 0.679002 CTCGGACGAAGGGAGTACCA 60.679 60.000 0.00 0.00 43.89 3.25
2914 2992 0.251297 TCGGACGAAGGGAGTACCAA 60.251 55.000 0.00 0.00 43.89 3.67
2917 2995 0.971386 GACGAAGGGAGTACCAACCA 59.029 55.000 0.00 0.00 43.89 3.67
2937 3015 4.040461 ACCAGAAGTAGAAAGCAGCTTACA 59.960 41.667 8.45 0.00 0.00 2.41
2940 3018 5.119898 CAGAAGTAGAAAGCAGCTTACACAG 59.880 44.000 8.45 0.00 0.00 3.66
2996 3074 7.587757 GTGAAGTGTTTTGCTATACAAGTCTTG 59.412 37.037 11.17 11.17 40.06 3.02
3038 3116 7.010460 GCAAACTTGATAAAATGCCACCTATTC 59.990 37.037 0.00 0.00 0.00 1.75
3092 3170 8.847196 CATGACAGGATCATTCTATCACATTTT 58.153 33.333 0.00 0.00 46.54 1.82
3204 3282 8.398665 GCTCTTCTACTACACCCAAAATTAATG 58.601 37.037 0.00 0.00 0.00 1.90
3278 3356 1.342672 ACCAAGCCCGGACGGAATAT 61.343 55.000 13.13 0.00 37.50 1.28
3282 3360 3.408634 CAAGCCCGGACGGAATATTTAT 58.591 45.455 13.13 0.00 37.50 1.40
3304 3382 8.934023 TTATTTGAAAAGTCATGGAGTACCTT 57.066 30.769 0.00 0.00 37.04 3.50
3305 3383 6.633500 TTTGAAAAGTCATGGAGTACCTTG 57.367 37.500 0.00 0.00 41.06 3.61
3306 3384 5.560722 TGAAAAGTCATGGAGTACCTTGA 57.439 39.130 0.00 0.00 44.45 3.02
3386 3464 2.807676 AGTATTTTGGTTGCCCCTCAG 58.192 47.619 0.00 0.00 0.00 3.35
3396 3474 2.618709 GTTGCCCCTCAGTTATGTATGC 59.381 50.000 0.00 0.00 0.00 3.14
3409 3509 7.330946 TCAGTTATGTATGCGCCTAACATAATC 59.669 37.037 27.47 22.44 43.89 1.75
3414 3514 3.769739 TGCGCCTAACATAATCCTCAT 57.230 42.857 4.18 0.00 0.00 2.90
3418 3518 4.320494 GCGCCTAACATAATCCTCATTTGG 60.320 45.833 0.00 0.00 0.00 3.28
3507 3635 0.584396 GACATTGCACCGTCGTTTGA 59.416 50.000 0.00 0.00 0.00 2.69
3550 3678 1.228956 TGCTTGCCTTGCCCTCATT 60.229 52.632 0.00 0.00 0.00 2.57
3563 3691 0.755079 CCTCATTGGCTCATCCTCGA 59.245 55.000 0.00 0.00 35.26 4.04
3636 3764 2.355009 CCAACAACAGCAAGCGCC 60.355 61.111 2.29 0.00 39.83 6.53
3647 3775 3.311110 AAGCGCCGACTCAAGGGA 61.311 61.111 2.29 0.00 0.00 4.20
3650 3778 1.143183 GCGCCGACTCAAGGGATTA 59.857 57.895 0.00 0.00 0.00 1.75
3654 3782 1.134907 GCCGACTCAAGGGATTAACGA 60.135 52.381 0.00 0.00 0.00 3.85
3656 3784 2.165845 CCGACTCAAGGGATTAACGACT 59.834 50.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.135493 GACGCGGCGTTTCTGCTC 62.135 66.667 29.98 10.97 44.92 4.26
4 5 4.612412 TTGGGACGCGGCGTTTCT 62.612 61.111 29.98 6.14 41.37 2.52
5 6 4.379143 GTTGGGACGCGGCGTTTC 62.379 66.667 29.98 22.79 41.37 2.78
9 10 3.732892 ATTTGTTGGGACGCGGCG 61.733 61.111 22.36 22.36 0.00 6.46
10 11 2.126502 CATTTGTTGGGACGCGGC 60.127 61.111 12.47 7.53 0.00 6.53
11 12 1.302383 TAGCATTTGTTGGGACGCGG 61.302 55.000 12.47 0.00 0.00 6.46
12 13 0.519519 TTAGCATTTGTTGGGACGCG 59.480 50.000 3.53 3.53 0.00 6.01
13 14 2.094752 ACATTAGCATTTGTTGGGACGC 60.095 45.455 0.00 0.00 0.00 5.19
14 15 3.848272 ACATTAGCATTTGTTGGGACG 57.152 42.857 0.00 0.00 0.00 4.79
15 16 5.092781 CGTAACATTAGCATTTGTTGGGAC 58.907 41.667 8.03 0.01 36.75 4.46
16 17 4.762765 ACGTAACATTAGCATTTGTTGGGA 59.237 37.500 8.03 0.00 36.75 4.37
17 18 5.054390 ACGTAACATTAGCATTTGTTGGG 57.946 39.130 8.03 3.60 36.75 4.12
18 19 6.638873 TCAAACGTAACATTAGCATTTGTTGG 59.361 34.615 8.03 3.87 36.75 3.77
19 20 7.616103 TCAAACGTAACATTAGCATTTGTTG 57.384 32.000 8.03 0.00 36.75 3.33
20 21 8.810652 AATCAAACGTAACATTAGCATTTGTT 57.189 26.923 0.00 4.05 39.32 2.83
21 22 8.698854 CAAATCAAACGTAACATTAGCATTTGT 58.301 29.630 0.00 0.00 0.00 2.83
29 30 9.627395 CCATTTACCAAATCAAACGTAACATTA 57.373 29.630 0.00 0.00 0.00 1.90
52 53 6.299141 AGATACACAACACAAAGAGAACCAT 58.701 36.000 0.00 0.00 0.00 3.55
124 125 9.817365 GGACGATCTGACATTATTGATTTATTG 57.183 33.333 0.00 0.00 0.00 1.90
142 143 9.372369 CTTCTCAAGTTTATTTTAGGACGATCT 57.628 33.333 0.00 0.00 0.00 2.75
145 146 9.550406 TTTCTTCTCAAGTTTATTTTAGGACGA 57.450 29.630 0.00 0.00 0.00 4.20
177 178 3.359407 GCAGCTTCTGTCGAACCTATCG 61.359 54.545 0.00 0.00 41.38 2.92
188 189 1.004918 GGTACGTGGCAGCTTCTGT 60.005 57.895 0.00 0.00 33.43 3.41
270 271 4.969484 ACGGAACTTACAACTTCTGGAAT 58.031 39.130 0.00 0.00 0.00 3.01
273 274 5.404667 GTCTTACGGAACTTACAACTTCTGG 59.595 44.000 0.00 0.00 0.00 3.86
284 285 7.046033 CCAATATTACAGGTCTTACGGAACTT 58.954 38.462 0.00 0.00 40.55 2.66
290 291 4.062991 GGGCCAATATTACAGGTCTTACG 58.937 47.826 4.39 0.00 0.00 3.18
293 294 4.601406 TTGGGCCAATATTACAGGTCTT 57.399 40.909 16.66 0.00 0.00 3.01
295 296 3.502211 CGATTGGGCCAATATTACAGGTC 59.498 47.826 30.78 15.27 33.90 3.85
309 310 0.322546 ACTTGGGTCTTCGATTGGGC 60.323 55.000 0.00 0.00 0.00 5.36
317 318 3.481453 AGCTCAAGAAACTTGGGTCTTC 58.519 45.455 12.04 0.00 31.66 2.87
353 354 8.085909 GGGTGCAAGCTAAATTACTTTCTAAAA 58.914 33.333 0.00 0.00 0.00 1.52
357 358 5.183904 CAGGGTGCAAGCTAAATTACTTTCT 59.816 40.000 0.00 0.00 0.00 2.52
358 359 5.402398 CAGGGTGCAAGCTAAATTACTTTC 58.598 41.667 0.00 0.00 0.00 2.62
359 360 4.220602 CCAGGGTGCAAGCTAAATTACTTT 59.779 41.667 0.00 0.00 0.00 2.66
360 361 3.763897 CCAGGGTGCAAGCTAAATTACTT 59.236 43.478 0.00 0.00 0.00 2.24
361 362 3.245264 ACCAGGGTGCAAGCTAAATTACT 60.245 43.478 0.00 0.00 0.00 2.24
362 363 3.089284 ACCAGGGTGCAAGCTAAATTAC 58.911 45.455 0.00 0.00 0.00 1.89
375 386 0.889186 GTGTGGCACTTACCAGGGTG 60.889 60.000 19.83 0.00 41.46 4.61
394 405 1.016627 CCATGTATTGGTGCCACTCG 58.983 55.000 0.00 0.00 40.99 4.18
430 441 1.541670 GCGTCACTAAACCTGGGACAA 60.542 52.381 0.00 0.00 38.70 3.18
435 446 0.999406 CATCGCGTCACTAAACCTGG 59.001 55.000 5.77 0.00 0.00 4.45
438 449 2.281762 GTCATCATCGCGTCACTAAACC 59.718 50.000 5.77 0.00 0.00 3.27
449 460 3.372206 ACAACTAAAGCTGTCATCATCGC 59.628 43.478 0.00 0.00 0.00 4.58
450 461 4.627035 TGACAACTAAAGCTGTCATCATCG 59.373 41.667 11.23 0.00 43.64 3.84
453 464 4.214119 GCTTGACAACTAAAGCTGTCATCA 59.786 41.667 14.98 3.25 46.49 3.07
534 568 7.412853 TGGCCTGACTTTTTAAAAACTAAGT 57.587 32.000 9.31 6.04 33.78 2.24
538 572 6.593770 CACTTTGGCCTGACTTTTTAAAAACT 59.406 34.615 9.31 1.09 0.00 2.66
539 573 6.674519 GCACTTTGGCCTGACTTTTTAAAAAC 60.675 38.462 9.31 2.20 0.00 2.43
540 574 5.352846 GCACTTTGGCCTGACTTTTTAAAAA 59.647 36.000 12.62 12.62 0.00 1.94
546 580 1.780503 AGCACTTTGGCCTGACTTTT 58.219 45.000 3.32 0.00 0.00 2.27
556 590 1.013596 TGTGTCACGAAGCACTTTGG 58.986 50.000 0.00 0.00 36.63 3.28
571 606 3.446310 TGATAAGTGTCACACGTGTGT 57.554 42.857 39.25 26.22 45.76 3.72
621 656 7.610305 GGAGGTTAGATGTGACATCCTTAAAAA 59.390 37.037 21.05 4.81 42.00 1.94
622 657 7.110155 GGAGGTTAGATGTGACATCCTTAAAA 58.890 38.462 21.05 6.42 42.00 1.52
623 658 6.352737 GGGAGGTTAGATGTGACATCCTTAAA 60.353 42.308 21.05 8.69 44.05 1.52
624 659 5.130477 GGGAGGTTAGATGTGACATCCTTAA 59.870 44.000 21.05 11.73 44.05 1.85
625 660 4.654262 GGGAGGTTAGATGTGACATCCTTA 59.346 45.833 21.05 6.22 44.05 2.69
626 661 3.456277 GGGAGGTTAGATGTGACATCCTT 59.544 47.826 21.05 7.22 44.05 3.36
627 662 3.041946 GGGAGGTTAGATGTGACATCCT 58.958 50.000 21.05 12.23 44.05 3.24
628 663 2.771943 TGGGAGGTTAGATGTGACATCC 59.228 50.000 21.05 9.65 43.91 3.51
629 664 3.197766 TGTGGGAGGTTAGATGTGACATC 59.802 47.826 17.46 17.46 0.00 3.06
630 665 3.181329 TGTGGGAGGTTAGATGTGACAT 58.819 45.455 0.00 0.00 0.00 3.06
631 666 2.615391 TGTGGGAGGTTAGATGTGACA 58.385 47.619 0.00 0.00 0.00 3.58
632 667 3.008049 ACTTGTGGGAGGTTAGATGTGAC 59.992 47.826 0.00 0.00 0.00 3.67
633 668 3.248024 ACTTGTGGGAGGTTAGATGTGA 58.752 45.455 0.00 0.00 0.00 3.58
634 669 3.703001 ACTTGTGGGAGGTTAGATGTG 57.297 47.619 0.00 0.00 0.00 3.21
635 670 8.792830 TTATATACTTGTGGGAGGTTAGATGT 57.207 34.615 0.00 0.00 0.00 3.06
636 671 9.658799 CATTATATACTTGTGGGAGGTTAGATG 57.341 37.037 0.00 0.00 0.00 2.90
637 672 8.322091 GCATTATATACTTGTGGGAGGTTAGAT 58.678 37.037 0.00 0.00 0.00 1.98
638 673 7.291416 TGCATTATATACTTGTGGGAGGTTAGA 59.709 37.037 0.00 0.00 0.00 2.10
639 674 7.450074 TGCATTATATACTTGTGGGAGGTTAG 58.550 38.462 0.00 0.00 0.00 2.34
640 675 7.381789 TGCATTATATACTTGTGGGAGGTTA 57.618 36.000 0.00 0.00 0.00 2.85
641 676 6.260700 TGCATTATATACTTGTGGGAGGTT 57.739 37.500 0.00 0.00 0.00 3.50
642 677 5.904984 TGCATTATATACTTGTGGGAGGT 57.095 39.130 0.00 0.00 0.00 3.85
643 678 6.475504 TGATGCATTATATACTTGTGGGAGG 58.524 40.000 0.00 0.00 0.00 4.30
644 679 7.984422 TTGATGCATTATATACTTGTGGGAG 57.016 36.000 0.00 0.00 0.00 4.30
694 729 7.639113 TTCACTCTGTTTGTGGTCTATTTTT 57.361 32.000 0.00 0.00 36.21 1.94
695 730 7.639113 TTTCACTCTGTTTGTGGTCTATTTT 57.361 32.000 0.00 0.00 36.21 1.82
696 731 7.639113 TTTTCACTCTGTTTGTGGTCTATTT 57.361 32.000 0.00 0.00 36.21 1.40
697 732 7.502226 TGATTTTCACTCTGTTTGTGGTCTATT 59.498 33.333 0.00 0.00 36.21 1.73
698 733 6.998074 TGATTTTCACTCTGTTTGTGGTCTAT 59.002 34.615 0.00 0.00 36.21 1.98
699 734 6.353323 TGATTTTCACTCTGTTTGTGGTCTA 58.647 36.000 0.00 0.00 36.21 2.59
700 735 5.192927 TGATTTTCACTCTGTTTGTGGTCT 58.807 37.500 0.00 0.00 36.21 3.85
701 736 5.066505 ACTGATTTTCACTCTGTTTGTGGTC 59.933 40.000 0.00 0.00 36.21 4.02
702 737 4.949856 ACTGATTTTCACTCTGTTTGTGGT 59.050 37.500 0.00 0.00 36.21 4.16
703 738 5.505173 ACTGATTTTCACTCTGTTTGTGG 57.495 39.130 0.00 0.00 36.21 4.17
704 739 8.397906 TCTAAACTGATTTTCACTCTGTTTGTG 58.602 33.333 14.59 9.55 41.71 3.33
705 740 8.506168 TCTAAACTGATTTTCACTCTGTTTGT 57.494 30.769 14.59 0.00 41.71 2.83
749 784 6.276847 GGTCTGTCTAGGACACATCTAAATG 58.723 44.000 0.00 0.00 37.67 2.32
750 785 5.364157 GGGTCTGTCTAGGACACATCTAAAT 59.636 44.000 0.00 0.00 37.67 1.40
751 786 4.710375 GGGTCTGTCTAGGACACATCTAAA 59.290 45.833 0.00 0.00 37.67 1.85
752 787 4.279145 GGGTCTGTCTAGGACACATCTAA 58.721 47.826 0.00 0.00 37.67 2.10
753 788 3.372784 GGGGTCTGTCTAGGACACATCTA 60.373 52.174 2.82 0.00 37.67 1.98
754 789 2.624557 GGGGTCTGTCTAGGACACATCT 60.625 54.545 2.82 0.00 37.67 2.90
755 790 1.757699 GGGGTCTGTCTAGGACACATC 59.242 57.143 2.82 0.00 37.67 3.06
756 791 1.362932 AGGGGTCTGTCTAGGACACAT 59.637 52.381 2.82 0.00 37.67 3.21
757 792 0.784495 AGGGGTCTGTCTAGGACACA 59.216 55.000 2.82 0.00 37.67 3.72
758 793 1.939980 AAGGGGTCTGTCTAGGACAC 58.060 55.000 0.00 0.00 37.67 3.67
759 794 3.271225 TGATAAGGGGTCTGTCTAGGACA 59.729 47.826 0.43 0.43 40.50 4.02
760 795 3.912248 TGATAAGGGGTCTGTCTAGGAC 58.088 50.000 0.00 0.00 0.00 3.85
761 796 4.834406 ATGATAAGGGGTCTGTCTAGGA 57.166 45.455 0.00 0.00 0.00 2.94
762 797 5.455326 CCAAATGATAAGGGGTCTGTCTAGG 60.455 48.000 0.00 0.00 0.00 3.02
763 798 5.455326 CCCAAATGATAAGGGGTCTGTCTAG 60.455 48.000 0.00 0.00 38.98 2.43
764 799 4.412199 CCCAAATGATAAGGGGTCTGTCTA 59.588 45.833 0.00 0.00 38.98 2.59
765 800 3.203040 CCCAAATGATAAGGGGTCTGTCT 59.797 47.826 0.00 0.00 38.98 3.41
766 801 3.555966 CCCAAATGATAAGGGGTCTGTC 58.444 50.000 0.00 0.00 38.98 3.51
767 802 3.669939 CCCAAATGATAAGGGGTCTGT 57.330 47.619 0.00 0.00 38.98 3.41
774 809 8.589701 ACTAAAGGTAAACCCAAATGATAAGG 57.410 34.615 0.00 0.00 36.42 2.69
776 811 9.181061 GCTACTAAAGGTAAACCCAAATGATAA 57.819 33.333 0.00 0.00 36.42 1.75
777 812 7.496591 CGCTACTAAAGGTAAACCCAAATGATA 59.503 37.037 0.00 0.00 36.42 2.15
778 813 6.317893 CGCTACTAAAGGTAAACCCAAATGAT 59.682 38.462 0.00 0.00 36.42 2.45
779 814 5.644636 CGCTACTAAAGGTAAACCCAAATGA 59.355 40.000 0.00 0.00 36.42 2.57
780 815 5.163693 CCGCTACTAAAGGTAAACCCAAATG 60.164 44.000 0.00 0.00 36.42 2.32
781 816 4.945543 CCGCTACTAAAGGTAAACCCAAAT 59.054 41.667 0.00 0.00 36.42 2.32
782 817 4.325972 CCGCTACTAAAGGTAAACCCAAA 58.674 43.478 0.00 0.00 36.42 3.28
783 818 3.307621 CCCGCTACTAAAGGTAAACCCAA 60.308 47.826 0.00 0.00 36.42 4.12
792 827 1.779569 CATACGCCCGCTACTAAAGG 58.220 55.000 0.00 0.00 0.00 3.11
811 846 0.310543 TGATTTATTGATGCCGCGGC 59.689 50.000 42.35 42.35 42.35 6.53
812 847 2.226200 TGATGATTTATTGATGCCGCGG 59.774 45.455 24.05 24.05 0.00 6.46
813 848 3.541071 TGATGATTTATTGATGCCGCG 57.459 42.857 0.00 0.00 0.00 6.46
814 849 4.801891 ACATGATGATTTATTGATGCCGC 58.198 39.130 0.00 0.00 0.00 6.53
815 850 8.024865 ACATTACATGATGATTTATTGATGCCG 58.975 33.333 0.00 0.00 0.00 5.69
866 901 4.288531 GTGGATCGTAGATACAACCTTCG 58.711 47.826 0.00 0.00 45.12 3.79
912 947 2.266554 CTCGCTTCAGTCTGATTCACC 58.733 52.381 2.68 0.00 0.00 4.02
914 949 1.733718 CGCTCGCTTCAGTCTGATTCA 60.734 52.381 2.68 0.00 0.00 2.57
937 972 1.747355 GGGCAGAATTGTGAGGATGTG 59.253 52.381 6.80 0.00 0.00 3.21
1195 1230 4.479993 CTGCTTCCGGGCCTCCTG 62.480 72.222 0.84 0.00 0.00 3.86
1544 1579 9.649167 GTCTTGTTAATTTGCTTACTCCTAGTA 57.351 33.333 0.00 0.00 0.00 1.82
1545 1580 7.331193 CGTCTTGTTAATTTGCTTACTCCTAGT 59.669 37.037 0.00 0.00 0.00 2.57
1566 1609 0.179094 TGCTGTTGGACGTTCGTCTT 60.179 50.000 21.52 0.00 35.64 3.01
1578 1621 5.342806 TCGTTCTCAGTTAATTGCTGTTG 57.657 39.130 10.35 6.54 35.60 3.33
2016 2064 1.142778 GCACGAAGATGACCGAGCTC 61.143 60.000 2.73 2.73 38.85 4.09
2453 2503 5.063944 CGCATTCTAAGTGCACTAGTGATTT 59.936 40.000 27.08 17.26 42.62 2.17
2470 2520 2.088423 TCCAATTTAACCGCGCATTCT 58.912 42.857 8.75 0.00 0.00 2.40
2471 2521 2.096819 TCTCCAATTTAACCGCGCATTC 59.903 45.455 8.75 0.00 0.00 2.67
2483 2540 7.176690 ACAACAACCGATTAAGATCTCCAATTT 59.823 33.333 0.00 0.00 0.00 1.82
2501 2558 1.778591 CAAAACGCATCGACAACAACC 59.221 47.619 0.00 0.00 0.00 3.77
2510 2567 0.725784 GACCTGCACAAAACGCATCG 60.726 55.000 0.00 0.00 39.02 3.84
2620 2677 2.789409 AGAAACAGCCTGTGTATCCC 57.211 50.000 0.00 0.00 39.03 3.85
2621 2678 3.010420 GGAAGAAACAGCCTGTGTATCC 58.990 50.000 0.00 0.52 39.03 2.59
2622 2679 3.674997 TGGAAGAAACAGCCTGTGTATC 58.325 45.455 0.00 0.00 39.03 2.24
2623 2680 3.788227 TGGAAGAAACAGCCTGTGTAT 57.212 42.857 0.00 0.00 39.03 2.29
2789 2849 2.093764 GGTGTCTTGAGATGTCTGGGAG 60.094 54.545 0.00 0.00 0.00 4.30
2795 2855 5.947228 TTTTCATGGTGTCTTGAGATGTC 57.053 39.130 0.00 0.00 0.00 3.06
2802 2862 4.805192 CACTTGGTTTTTCATGGTGTCTTG 59.195 41.667 0.00 0.00 0.00 3.02
2805 2865 4.097892 AGACACTTGGTTTTTCATGGTGTC 59.902 41.667 14.46 14.46 43.09 3.67
2823 2901 6.527372 GGACGAAGAGAGTATTAAACAGACAC 59.473 42.308 0.00 0.00 0.00 3.67
2824 2902 6.618811 GGACGAAGAGAGTATTAAACAGACA 58.381 40.000 0.00 0.00 0.00 3.41
2825 2903 5.738225 CGGACGAAGAGAGTATTAAACAGAC 59.262 44.000 0.00 0.00 0.00 3.51
2826 2904 5.645067 TCGGACGAAGAGAGTATTAAACAGA 59.355 40.000 0.00 0.00 0.00 3.41
2827 2905 5.877031 TCGGACGAAGAGAGTATTAAACAG 58.123 41.667 0.00 0.00 0.00 3.16
2828 2906 5.885230 TCGGACGAAGAGAGTATTAAACA 57.115 39.130 0.00 0.00 0.00 2.83
2829 2907 7.572502 TTTTCGGACGAAGAGAGTATTAAAC 57.427 36.000 7.25 0.00 35.38 2.01
2830 2908 7.869429 ACTTTTTCGGACGAAGAGAGTATTAAA 59.131 33.333 19.55 9.55 35.38 1.52
2831 2909 7.373493 ACTTTTTCGGACGAAGAGAGTATTAA 58.627 34.615 19.55 3.61 35.38 1.40
2832 2910 6.917533 ACTTTTTCGGACGAAGAGAGTATTA 58.082 36.000 19.55 0.00 35.38 0.98
2833 2911 5.780984 ACTTTTTCGGACGAAGAGAGTATT 58.219 37.500 19.55 2.48 35.38 1.89
2834 2912 5.388408 ACTTTTTCGGACGAAGAGAGTAT 57.612 39.130 19.55 2.74 35.38 2.12
2835 2913 4.843220 ACTTTTTCGGACGAAGAGAGTA 57.157 40.909 19.55 0.01 35.38 2.59
2836 2914 3.729862 ACTTTTTCGGACGAAGAGAGT 57.270 42.857 19.55 15.37 35.38 3.24
2837 2915 4.270325 ACAAACTTTTTCGGACGAAGAGAG 59.730 41.667 19.55 14.91 35.38 3.20
2838 2916 4.186159 ACAAACTTTTTCGGACGAAGAGA 58.814 39.130 19.55 5.46 35.38 3.10
2839 2917 4.270325 AGACAAACTTTTTCGGACGAAGAG 59.730 41.667 7.25 11.49 35.38 2.85
2840 2918 4.186159 AGACAAACTTTTTCGGACGAAGA 58.814 39.130 7.25 0.23 35.38 2.87
2841 2919 4.033587 TGAGACAAACTTTTTCGGACGAAG 59.966 41.667 7.25 0.00 35.38 3.79
2842 2920 3.933955 TGAGACAAACTTTTTCGGACGAA 59.066 39.130 2.62 2.62 0.00 3.85
2843 2921 3.523547 TGAGACAAACTTTTTCGGACGA 58.476 40.909 0.00 0.00 0.00 4.20
2844 2922 3.936902 TGAGACAAACTTTTTCGGACG 57.063 42.857 0.00 0.00 0.00 4.79
2845 2923 6.061231 AGATTGAGACAAACTTTTTCGGAC 57.939 37.500 0.00 0.00 0.00 4.79
2846 2924 6.094881 ACAAGATTGAGACAAACTTTTTCGGA 59.905 34.615 0.00 0.00 0.00 4.55
2847 2925 6.265577 ACAAGATTGAGACAAACTTTTTCGG 58.734 36.000 0.00 0.00 0.00 4.30
2848 2926 6.966632 TGACAAGATTGAGACAAACTTTTTCG 59.033 34.615 0.00 0.00 0.00 3.46
2849 2927 8.862550 ATGACAAGATTGAGACAAACTTTTTC 57.137 30.769 0.00 0.00 0.00 2.29
2850 2928 8.469200 TGATGACAAGATTGAGACAAACTTTTT 58.531 29.630 0.00 0.00 0.00 1.94
2851 2929 7.999679 TGATGACAAGATTGAGACAAACTTTT 58.000 30.769 0.00 0.00 0.00 2.27
2852 2930 7.572523 TGATGACAAGATTGAGACAAACTTT 57.427 32.000 0.00 0.00 0.00 2.66
2853 2931 7.756395 ATGATGACAAGATTGAGACAAACTT 57.244 32.000 0.00 0.00 0.00 2.66
2854 2932 7.756395 AATGATGACAAGATTGAGACAAACT 57.244 32.000 0.00 0.00 0.00 2.66
2855 2933 8.077991 TCAAATGATGACAAGATTGAGACAAAC 58.922 33.333 0.00 0.00 31.50 2.93
2856 2934 8.168790 TCAAATGATGACAAGATTGAGACAAA 57.831 30.769 0.00 0.00 31.50 2.83
2857 2935 7.094506 CCTCAAATGATGACAAGATTGAGACAA 60.095 37.037 17.94 0.00 41.81 3.18
2858 2936 6.373495 CCTCAAATGATGACAAGATTGAGACA 59.627 38.462 17.94 0.00 41.81 3.41
2859 2937 6.183360 CCCTCAAATGATGACAAGATTGAGAC 60.183 42.308 17.94 0.00 41.81 3.36
2860 2938 5.884232 CCCTCAAATGATGACAAGATTGAGA 59.116 40.000 17.94 5.66 41.81 3.27
2861 2939 5.884232 TCCCTCAAATGATGACAAGATTGAG 59.116 40.000 12.86 12.86 40.60 3.02
2862 2940 5.649395 GTCCCTCAAATGATGACAAGATTGA 59.351 40.000 0.00 0.00 33.47 2.57
2863 2941 5.416639 TGTCCCTCAAATGATGACAAGATTG 59.583 40.000 11.33 0.00 34.74 2.67
2864 2942 5.416952 GTGTCCCTCAAATGATGACAAGATT 59.583 40.000 13.98 0.00 37.42 2.40
2865 2943 4.946157 GTGTCCCTCAAATGATGACAAGAT 59.054 41.667 13.98 0.00 37.42 2.40
2866 2944 4.202451 TGTGTCCCTCAAATGATGACAAGA 60.202 41.667 13.98 5.43 37.42 3.02
2867 2945 4.074259 TGTGTCCCTCAAATGATGACAAG 58.926 43.478 13.98 0.00 37.42 3.16
2868 2946 4.097551 TGTGTCCCTCAAATGATGACAA 57.902 40.909 13.98 6.07 37.42 3.18
2869 2947 3.786368 TGTGTCCCTCAAATGATGACA 57.214 42.857 10.23 10.23 35.05 3.58
2870 2948 5.649782 AAATGTGTCCCTCAAATGATGAC 57.350 39.130 6.37 6.37 33.47 3.06
2871 2949 6.012113 AGAAAATGTGTCCCTCAAATGATGA 58.988 36.000 0.00 0.00 36.38 2.92
2872 2950 6.276832 AGAAAATGTGTCCCTCAAATGATG 57.723 37.500 0.00 0.00 0.00 3.07
2873 2951 5.124457 CGAGAAAATGTGTCCCTCAAATGAT 59.876 40.000 0.00 0.00 0.00 2.45
2874 2952 4.455533 CGAGAAAATGTGTCCCTCAAATGA 59.544 41.667 0.00 0.00 0.00 2.57
2875 2953 4.379813 CCGAGAAAATGTGTCCCTCAAATG 60.380 45.833 0.00 0.00 0.00 2.32
2876 2954 3.758554 CCGAGAAAATGTGTCCCTCAAAT 59.241 43.478 0.00 0.00 0.00 2.32
2877 2955 3.146066 CCGAGAAAATGTGTCCCTCAAA 58.854 45.455 0.00 0.00 0.00 2.69
2878 2956 2.370519 TCCGAGAAAATGTGTCCCTCAA 59.629 45.455 0.00 0.00 0.00 3.02
2879 2957 1.974957 TCCGAGAAAATGTGTCCCTCA 59.025 47.619 0.00 0.00 0.00 3.86
2880 2958 2.347731 GTCCGAGAAAATGTGTCCCTC 58.652 52.381 0.00 0.00 0.00 4.30
2881 2959 1.337823 CGTCCGAGAAAATGTGTCCCT 60.338 52.381 0.00 0.00 0.00 4.20
2882 2960 1.076332 CGTCCGAGAAAATGTGTCCC 58.924 55.000 0.00 0.00 0.00 4.46
2883 2961 2.074547 TCGTCCGAGAAAATGTGTCC 57.925 50.000 0.00 0.00 0.00 4.02
2884 2962 2.412089 CCTTCGTCCGAGAAAATGTGTC 59.588 50.000 0.00 0.00 0.00 3.67
2885 2963 2.413837 CCTTCGTCCGAGAAAATGTGT 58.586 47.619 0.00 0.00 0.00 3.72
2886 2964 1.732259 CCCTTCGTCCGAGAAAATGTG 59.268 52.381 0.00 0.00 0.00 3.21
2887 2965 1.621814 TCCCTTCGTCCGAGAAAATGT 59.378 47.619 0.00 0.00 0.00 2.71
2888 2966 2.271800 CTCCCTTCGTCCGAGAAAATG 58.728 52.381 0.00 0.00 0.00 2.32
2889 2967 1.900486 ACTCCCTTCGTCCGAGAAAAT 59.100 47.619 0.00 0.00 0.00 1.82
2890 2968 1.335145 ACTCCCTTCGTCCGAGAAAA 58.665 50.000 0.00 0.00 0.00 2.29
2891 2969 1.815003 GTACTCCCTTCGTCCGAGAAA 59.185 52.381 0.00 0.00 0.00 2.52
2892 2970 1.457346 GTACTCCCTTCGTCCGAGAA 58.543 55.000 0.00 0.00 0.00 2.87
2893 2971 0.393537 GGTACTCCCTTCGTCCGAGA 60.394 60.000 0.00 0.00 0.00 4.04
2894 2972 0.679002 TGGTACTCCCTTCGTCCGAG 60.679 60.000 0.00 0.00 0.00 4.63
2895 2973 0.251297 TTGGTACTCCCTTCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
2896 2974 0.108945 GTTGGTACTCCCTTCGTCCG 60.109 60.000 0.00 0.00 0.00 4.79
2897 2975 0.248565 GGTTGGTACTCCCTTCGTCC 59.751 60.000 0.00 0.00 0.00 4.79
2898 2976 0.971386 TGGTTGGTACTCCCTTCGTC 59.029 55.000 0.00 0.00 0.00 4.20
2899 2977 0.974383 CTGGTTGGTACTCCCTTCGT 59.026 55.000 0.00 0.00 0.00 3.85
2900 2978 1.263356 TCTGGTTGGTACTCCCTTCG 58.737 55.000 0.00 0.00 0.00 3.79
2901 2979 2.638363 ACTTCTGGTTGGTACTCCCTTC 59.362 50.000 0.00 0.00 0.00 3.46
2902 2980 2.702748 ACTTCTGGTTGGTACTCCCTT 58.297 47.619 0.00 0.00 0.00 3.95
2903 2981 2.417719 ACTTCTGGTTGGTACTCCCT 57.582 50.000 0.00 0.00 0.00 4.20
2904 2982 3.438183 TCTACTTCTGGTTGGTACTCCC 58.562 50.000 0.00 0.00 0.00 4.30
2905 2983 5.479124 TTTCTACTTCTGGTTGGTACTCC 57.521 43.478 0.00 0.00 0.00 3.85
2906 2984 4.930405 GCTTTCTACTTCTGGTTGGTACTC 59.070 45.833 0.00 0.00 0.00 2.59
2907 2985 4.347000 TGCTTTCTACTTCTGGTTGGTACT 59.653 41.667 0.00 0.00 0.00 2.73
2908 2986 4.638304 TGCTTTCTACTTCTGGTTGGTAC 58.362 43.478 0.00 0.00 0.00 3.34
2909 2987 4.802918 GCTGCTTTCTACTTCTGGTTGGTA 60.803 45.833 0.00 0.00 0.00 3.25
2910 2988 3.744660 CTGCTTTCTACTTCTGGTTGGT 58.255 45.455 0.00 0.00 0.00 3.67
2911 2989 2.485814 GCTGCTTTCTACTTCTGGTTGG 59.514 50.000 0.00 0.00 0.00 3.77
2912 2990 3.406764 AGCTGCTTTCTACTTCTGGTTG 58.593 45.455 0.00 0.00 0.00 3.77
2913 2991 3.778954 AGCTGCTTTCTACTTCTGGTT 57.221 42.857 0.00 0.00 0.00 3.67
2914 2992 3.778954 AAGCTGCTTTCTACTTCTGGT 57.221 42.857 9.53 0.00 0.00 4.00
2917 2995 5.215252 TGTGTAAGCTGCTTTCTACTTCT 57.785 39.130 21.29 0.00 0.00 2.85
2947 3025 5.363868 ACTTCTGATCCGATTTGGTATCTGA 59.636 40.000 0.00 7.36 39.52 3.27
2950 3028 5.601662 TCACTTCTGATCCGATTTGGTATC 58.398 41.667 0.00 0.00 39.52 2.24
2996 3074 1.495584 TTGCGACTCAAACAGCGGTC 61.496 55.000 0.00 0.00 0.00 4.79
3038 3116 0.034477 ATAAGTGGAGGCCAAACCCG 60.034 55.000 5.01 0.00 40.58 5.28
3092 3170 6.070995 ACAATGTTACAACTAGCTAGGCAGTA 60.071 38.462 24.35 18.62 0.00 2.74
3145 3223 7.704789 ATTGTCAAAATTGAAGTCTTGAAGC 57.295 32.000 0.00 0.00 39.21 3.86
3204 3282 2.487762 TCAATGAAAATGGACGGCTCAC 59.512 45.455 0.00 0.00 0.00 3.51
3278 3356 8.934023 AGGTACTCCATGACTTTTCAAATAAA 57.066 30.769 0.00 0.00 34.61 1.40
3282 3360 6.361433 TCAAGGTACTCCATGACTTTTCAAA 58.639 36.000 0.00 0.00 38.49 2.69
3304 3382 3.756082 ATCATTTTGCCCCTTAGGTCA 57.244 42.857 0.00 0.00 38.26 4.02
3305 3383 5.833131 TGATTATCATTTTGCCCCTTAGGTC 59.167 40.000 0.00 0.00 38.26 3.85
3306 3384 5.598417 GTGATTATCATTTTGCCCCTTAGGT 59.402 40.000 0.00 0.00 38.26 3.08
3307 3385 5.598005 TGTGATTATCATTTTGCCCCTTAGG 59.402 40.000 0.00 0.00 39.47 2.69
3308 3386 6.713762 TGTGATTATCATTTTGCCCCTTAG 57.286 37.500 0.00 0.00 0.00 2.18
3309 3387 6.016360 CGATGTGATTATCATTTTGCCCCTTA 60.016 38.462 0.00 0.00 0.00 2.69
3386 3464 6.594159 AGGATTATGTTAGGCGCATACATAAC 59.406 38.462 28.07 22.90 43.52 1.89
3396 3474 4.821805 ACCAAATGAGGATTATGTTAGGCG 59.178 41.667 0.00 0.00 0.00 5.52
3409 3509 7.475137 TTAATTAGGGTTCAACCAAATGAGG 57.525 36.000 9.35 0.00 41.02 3.86
3414 3514 6.926630 AGCATTAATTAGGGTTCAACCAAA 57.073 33.333 9.35 2.21 41.02 3.28
3418 3518 7.665974 AGGCTATAGCATTAATTAGGGTTCAAC 59.334 37.037 25.53 2.28 44.36 3.18
3507 3635 2.224161 GCTCTTGTCGGCTATCCTTGAT 60.224 50.000 0.00 0.00 0.00 2.57
3550 3678 0.537371 TCGCTATCGAGGATGAGCCA 60.537 55.000 0.00 0.00 40.21 4.75
3563 3691 1.878656 GCTGCCCCTATCGTCGCTAT 61.879 60.000 0.00 0.00 0.00 2.97
3636 3764 3.505464 AGTCGTTAATCCCTTGAGTCG 57.495 47.619 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.