Multiple sequence alignment - TraesCS4A01G091700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G091700 chr4A 100.000 3124 0 0 1 3124 98561663 98558540 0.000000e+00 5770.0
1 TraesCS4A01G091700 chr4D 91.743 1526 60 27 798 2287 366690141 366691636 0.000000e+00 2060.0
2 TraesCS4A01G091700 chr4D 93.495 784 51 0 7 790 170695487 170694704 0.000000e+00 1166.0
3 TraesCS4A01G091700 chr4D 93.240 784 53 0 7 790 455629378 455628595 0.000000e+00 1155.0
4 TraesCS4A01G091700 chr4D 87.912 637 40 21 2460 3087 366691744 366692352 0.000000e+00 715.0
5 TraesCS4A01G091700 chr4B 91.430 1517 50 30 798 2288 451488860 451490322 0.000000e+00 2008.0
6 TraesCS4A01G091700 chr4B 90.162 742 32 18 2370 3087 451490326 451491050 0.000000e+00 928.0
7 TraesCS4A01G091700 chr4B 90.000 80 5 3 2312 2389 30370003 30370081 1.980000e-17 100.0
8 TraesCS4A01G091700 chr4B 92.754 69 3 2 2312 2379 32904931 32904998 7.130000e-17 99.0
9 TraesCS4A01G091700 chr4B 92.647 68 5 0 2312 2379 624868482 624868549 7.130000e-17 99.0
10 TraesCS4A01G091700 chr5A 94.311 791 43 2 1 790 29997931 29998720 0.000000e+00 1210.0
11 TraesCS4A01G091700 chr5A 92.647 68 5 0 2312 2379 678663584 678663651 7.130000e-17 99.0
12 TraesCS4A01G091700 chr2A 93.458 749 48 1 1 749 119706401 119705654 0.000000e+00 1110.0
13 TraesCS4A01G091700 chr1A 91.582 784 65 1 7 790 363497117 363497899 0.000000e+00 1081.0
14 TraesCS4A01G091700 chr1A 89.203 778 84 0 13 790 557943473 557944250 0.000000e+00 972.0
15 TraesCS4A01G091700 chr6D 87.215 790 101 0 1 790 16591036 16591825 0.000000e+00 900.0
16 TraesCS4A01G091700 chr6D 83.736 787 126 2 5 790 315196423 315195638 0.000000e+00 743.0
17 TraesCS4A01G091700 chr2B 82.472 793 133 6 1 790 98750177 98750966 0.000000e+00 689.0
18 TraesCS4A01G091700 chr7D 94.030 67 4 0 2312 2378 339780221 339780287 5.510000e-18 102.0
19 TraesCS4A01G091700 chr7D 91.549 71 6 0 2312 2382 613432696 613432766 7.130000e-17 99.0
20 TraesCS4A01G091700 chr7A 94.030 67 4 0 2312 2378 78824114 78824048 5.510000e-18 102.0
21 TraesCS4A01G091700 chr3D 94.030 67 2 2 2312 2377 31774515 31774580 1.980000e-17 100.0
22 TraesCS4A01G091700 chr2D 91.429 70 6 0 2312 2381 178776480 178776549 2.560000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G091700 chr4A 98558540 98561663 3123 True 5770.0 5770 100.0000 1 3124 1 chr4A.!!$R1 3123
1 TraesCS4A01G091700 chr4D 366690141 366692352 2211 False 1387.5 2060 89.8275 798 3087 2 chr4D.!!$F1 2289
2 TraesCS4A01G091700 chr4D 170694704 170695487 783 True 1166.0 1166 93.4950 7 790 1 chr4D.!!$R1 783
3 TraesCS4A01G091700 chr4D 455628595 455629378 783 True 1155.0 1155 93.2400 7 790 1 chr4D.!!$R2 783
4 TraesCS4A01G091700 chr4B 451488860 451491050 2190 False 1468.0 2008 90.7960 798 3087 2 chr4B.!!$F4 2289
5 TraesCS4A01G091700 chr5A 29997931 29998720 789 False 1210.0 1210 94.3110 1 790 1 chr5A.!!$F1 789
6 TraesCS4A01G091700 chr2A 119705654 119706401 747 True 1110.0 1110 93.4580 1 749 1 chr2A.!!$R1 748
7 TraesCS4A01G091700 chr1A 363497117 363497899 782 False 1081.0 1081 91.5820 7 790 1 chr1A.!!$F1 783
8 TraesCS4A01G091700 chr1A 557943473 557944250 777 False 972.0 972 89.2030 13 790 1 chr1A.!!$F2 777
9 TraesCS4A01G091700 chr6D 16591036 16591825 789 False 900.0 900 87.2150 1 790 1 chr6D.!!$F1 789
10 TraesCS4A01G091700 chr6D 315195638 315196423 785 True 743.0 743 83.7360 5 790 1 chr6D.!!$R1 785
11 TraesCS4A01G091700 chr2B 98750177 98750966 789 False 689.0 689 82.4720 1 790 1 chr2B.!!$F1 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
469 470 0.880718 GAGGTAATAGCGTGCTGGGC 60.881 60.0 4.25 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2237 0.035439 ATGGGGGCAGTTCTAACACG 60.035 55.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.069500 CAACTACCGAACCAAAAGCCG 60.069 52.381 0.00 0.00 0.00 5.52
454 455 1.535687 ACCCGGCAACACTAGAGGT 60.536 57.895 0.00 0.00 0.00 3.85
469 470 0.880718 GAGGTAATAGCGTGCTGGGC 60.881 60.000 4.25 0.00 0.00 5.36
470 471 2.244651 GGTAATAGCGTGCTGGGCG 61.245 63.158 4.25 0.00 35.00 6.13
487 488 2.811799 GGGTTTGGCGTTTGCAGT 59.188 55.556 0.00 0.00 45.35 4.40
537 539 1.602605 TCAGACGCGAAGGAGGTGA 60.603 57.895 15.93 1.23 0.00 4.02
678 680 5.752036 AGCTCATAGATTAGCCAAGCATA 57.248 39.130 0.00 0.00 39.64 3.14
715 717 1.612199 GGGGCGTCATGTTTGGTTAGA 60.612 52.381 0.00 0.00 0.00 2.10
785 787 6.062095 TGAATAAAGCTTGGCTATTACCCTC 58.938 40.000 0.00 0.00 38.25 4.30
790 792 4.871822 AGCTTGGCTATTACCCTCAAAAT 58.128 39.130 0.00 0.00 36.99 1.82
791 793 5.272402 AGCTTGGCTATTACCCTCAAAATT 58.728 37.500 0.00 0.00 36.99 1.82
792 794 6.431722 AGCTTGGCTATTACCCTCAAAATTA 58.568 36.000 0.00 0.00 36.99 1.40
793 795 7.069344 AGCTTGGCTATTACCCTCAAAATTAT 58.931 34.615 0.00 0.00 36.99 1.28
794 796 7.565029 AGCTTGGCTATTACCCTCAAAATTATT 59.435 33.333 0.00 0.00 36.99 1.40
795 797 8.204160 GCTTGGCTATTACCCTCAAAATTATTT 58.796 33.333 0.00 0.00 0.00 1.40
843 845 3.206957 GCGGATAAACCACGGCCC 61.207 66.667 0.00 0.00 38.90 5.80
928 937 1.227002 GTCCGTCCATCTTCTCGCC 60.227 63.158 0.00 0.00 0.00 5.54
945 954 2.433664 CAACCCAGCGACGTACCC 60.434 66.667 0.00 0.00 0.00 3.69
1060 1069 2.746412 TTCAGCCACCATCACCACCG 62.746 60.000 0.00 0.00 0.00 4.94
1181 1198 2.125912 CTTGTGCGGAGAGGTCGG 60.126 66.667 0.00 0.00 0.00 4.79
1186 1203 3.878519 GCGGAGAGGTCGGTCGAG 61.879 72.222 0.00 0.00 0.00 4.04
1271 1288 1.831286 CGAGGTGCGGGGGTACTAT 60.831 63.158 0.00 0.00 36.03 2.12
1444 1462 3.199508 ACCATCTCCTCCTGTTCATCAAG 59.800 47.826 0.00 0.00 0.00 3.02
1627 1645 4.681978 ACACGGTCGCTGCCTTCC 62.682 66.667 0.00 0.00 0.00 3.46
1637 1655 1.681666 CTGCCTTCCTCCTCTGCAA 59.318 57.895 0.00 0.00 0.00 4.08
1666 1696 4.814147 TCTGAATTATATGAGCCGCTGAG 58.186 43.478 0.00 0.00 0.00 3.35
1755 1785 1.350319 CTCGTTCGAGCTCTCCGAG 59.650 63.158 23.06 23.06 39.02 4.63
1827 1857 2.418910 CGAGTGGATCCCGTCAGCT 61.419 63.158 9.90 0.00 0.00 4.24
1856 1886 1.411651 GGAGGACAGATACTGCCCCC 61.412 65.000 0.00 0.00 34.47 5.40
1871 1901 0.341609 CCCCCTCTCTCCCTCTTCTT 59.658 60.000 0.00 0.00 0.00 2.52
1872 1902 1.274126 CCCCCTCTCTCCCTCTTCTTT 60.274 57.143 0.00 0.00 0.00 2.52
1873 1903 1.836802 CCCCTCTCTCCCTCTTCTTTG 59.163 57.143 0.00 0.00 0.00 2.77
1874 1904 1.209261 CCCTCTCTCCCTCTTCTTTGC 59.791 57.143 0.00 0.00 0.00 3.68
1875 1905 2.187100 CCTCTCTCCCTCTTCTTTGCT 58.813 52.381 0.00 0.00 0.00 3.91
1876 1906 2.093553 CCTCTCTCCCTCTTCTTTGCTG 60.094 54.545 0.00 0.00 0.00 4.41
1877 1907 1.905215 TCTCTCCCTCTTCTTTGCTGG 59.095 52.381 0.00 0.00 0.00 4.85
1878 1908 0.326264 TCTCCCTCTTCTTTGCTGGC 59.674 55.000 0.00 0.00 0.00 4.85
1898 1928 3.670311 CATTTCTGCAGTTCTCATCGG 57.330 47.619 14.67 0.00 0.00 4.18
1990 2020 2.112815 GCCGGGCAATGGTCTACAC 61.113 63.158 15.62 0.00 0.00 2.90
1991 2021 1.602237 CCGGGCAATGGTCTACACT 59.398 57.895 0.00 0.00 0.00 3.55
2003 2033 2.561419 GGTCTACACTCTACAGCCAACA 59.439 50.000 0.00 0.00 0.00 3.33
2004 2034 3.195825 GGTCTACACTCTACAGCCAACAT 59.804 47.826 0.00 0.00 0.00 2.71
2005 2035 4.177026 GTCTACACTCTACAGCCAACATG 58.823 47.826 0.00 0.00 0.00 3.21
2022 2057 1.596260 CATGATCAGATGCGTGTGACC 59.404 52.381 8.09 0.00 29.51 4.02
2042 2077 3.642848 ACCTCCGGTTAAATCGGCTATTA 59.357 43.478 0.00 0.00 46.43 0.98
2076 2111 3.865428 CGCGTATTCGTGTATATCTGC 57.135 47.619 0.00 0.00 41.80 4.26
2077 2112 2.592897 CGCGTATTCGTGTATATCTGCC 59.407 50.000 0.00 0.00 41.80 4.85
2078 2113 3.571571 GCGTATTCGTGTATATCTGCCA 58.428 45.455 0.00 0.00 39.49 4.92
2079 2114 4.174009 GCGTATTCGTGTATATCTGCCAT 58.826 43.478 0.00 0.00 39.49 4.40
2089 2124 6.578545 CGTGTATATCTGCCATTTGTTATTGC 59.421 38.462 0.00 0.00 0.00 3.56
2169 2206 4.096231 TGTGTTGTGGAACTGAATGAAGTG 59.904 41.667 0.00 0.00 38.04 3.16
2174 2211 2.106338 TGGAACTGAATGAAGTGCAGGA 59.894 45.455 0.00 0.00 34.05 3.86
2194 2231 8.677300 TGCAGGAAAATAAATCAGAAGTATGTC 58.323 33.333 0.00 0.00 0.00 3.06
2242 2294 2.040947 CCAAGGAGAAGAGAAAGGCCTT 59.959 50.000 13.78 13.78 36.24 4.35
2243 2295 3.264450 CCAAGGAGAAGAGAAAGGCCTTA 59.736 47.826 20.84 0.00 34.21 2.69
2244 2296 4.512484 CAAGGAGAAGAGAAAGGCCTTAG 58.488 47.826 20.84 0.00 34.21 2.18
2245 2297 4.067944 AGGAGAAGAGAAAGGCCTTAGA 57.932 45.455 20.84 0.00 0.00 2.10
2246 2298 4.030216 AGGAGAAGAGAAAGGCCTTAGAG 58.970 47.826 20.84 0.00 0.00 2.43
2255 2307 4.532521 AGAAAGGCCTTAGAGTAGAGCAAA 59.467 41.667 20.84 0.00 0.00 3.68
2288 2340 2.906389 AGAGGCAAAGACACATGGTAGA 59.094 45.455 0.00 0.00 0.00 2.59
2290 2342 3.412386 AGGCAAAGACACATGGTAGAAC 58.588 45.455 0.00 0.00 0.00 3.01
2291 2343 3.073062 AGGCAAAGACACATGGTAGAACT 59.927 43.478 0.00 0.00 0.00 3.01
2292 2344 4.286032 AGGCAAAGACACATGGTAGAACTA 59.714 41.667 0.00 0.00 0.00 2.24
2293 2345 4.392138 GGCAAAGACACATGGTAGAACTAC 59.608 45.833 0.00 3.66 35.40 2.73
2294 2346 5.238583 GCAAAGACACATGGTAGAACTACT 58.761 41.667 11.04 0.00 36.36 2.57
2295 2347 6.395629 GCAAAGACACATGGTAGAACTACTA 58.604 40.000 11.04 6.27 36.36 1.82
2308 2360 5.114764 AGAACTACTACTACCTCTGTCCC 57.885 47.826 0.00 0.00 0.00 4.46
2309 2361 4.539293 AGAACTACTACTACCTCTGTCCCA 59.461 45.833 0.00 0.00 0.00 4.37
2310 2362 4.233632 ACTACTACTACCTCTGTCCCAC 57.766 50.000 0.00 0.00 0.00 4.61
2311 2363 3.590630 ACTACTACTACCTCTGTCCCACA 59.409 47.826 0.00 0.00 0.00 4.17
2312 2364 3.537795 ACTACTACCTCTGTCCCACAA 57.462 47.619 0.00 0.00 0.00 3.33
2313 2365 3.163467 ACTACTACCTCTGTCCCACAAC 58.837 50.000 0.00 0.00 0.00 3.32
2314 2366 0.966920 ACTACCTCTGTCCCACAACG 59.033 55.000 0.00 0.00 0.00 4.10
2315 2367 0.966920 CTACCTCTGTCCCACAACGT 59.033 55.000 0.00 0.00 0.00 3.99
2316 2368 1.343465 CTACCTCTGTCCCACAACGTT 59.657 52.381 0.00 0.00 0.00 3.99
2317 2369 0.544697 ACCTCTGTCCCACAACGTTT 59.455 50.000 0.00 0.00 0.00 3.60
2318 2370 1.064979 ACCTCTGTCCCACAACGTTTT 60.065 47.619 0.00 0.00 0.00 2.43
2319 2371 2.021457 CCTCTGTCCCACAACGTTTTT 58.979 47.619 0.00 0.00 0.00 1.94
2320 2372 2.223479 CCTCTGTCCCACAACGTTTTTG 60.223 50.000 0.00 0.00 0.00 2.44
2321 2373 2.680841 CTCTGTCCCACAACGTTTTTGA 59.319 45.455 0.00 0.00 0.00 2.69
2322 2374 2.420722 TCTGTCCCACAACGTTTTTGAC 59.579 45.455 0.00 4.12 0.00 3.18
2323 2375 2.160205 TGTCCCACAACGTTTTTGACA 58.840 42.857 12.89 12.89 0.00 3.58
2324 2376 2.095161 TGTCCCACAACGTTTTTGACAC 60.095 45.455 12.89 7.74 0.00 3.67
2325 2377 2.162809 GTCCCACAACGTTTTTGACACT 59.837 45.455 0.00 0.00 0.00 3.55
2326 2378 3.374678 GTCCCACAACGTTTTTGACACTA 59.625 43.478 0.00 0.00 0.00 2.74
2327 2379 4.008330 TCCCACAACGTTTTTGACACTAA 58.992 39.130 0.00 0.00 0.00 2.24
2328 2380 4.641094 TCCCACAACGTTTTTGACACTAAT 59.359 37.500 0.00 0.00 0.00 1.73
2329 2381 4.737765 CCCACAACGTTTTTGACACTAATG 59.262 41.667 0.00 0.00 0.00 1.90
2330 2382 5.336744 CCACAACGTTTTTGACACTAATGT 58.663 37.500 0.00 0.00 43.71 2.71
2331 2383 6.458478 CCCACAACGTTTTTGACACTAATGTA 60.458 38.462 0.00 0.00 39.95 2.29
2332 2384 6.631238 CCACAACGTTTTTGACACTAATGTAG 59.369 38.462 0.00 0.00 39.95 2.74
2333 2385 7.184106 CACAACGTTTTTGACACTAATGTAGT 58.816 34.615 0.00 0.00 39.95 2.73
2364 2416 9.908152 AAAACGTTCTTATATTTTGGAAAGGAG 57.092 29.630 0.00 0.00 0.00 3.69
2365 2417 7.625828 ACGTTCTTATATTTTGGAAAGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2366 2418 6.602009 ACGTTCTTATATTTTGGAAAGGAGGG 59.398 38.462 0.00 0.00 0.00 4.30
2367 2419 6.826741 CGTTCTTATATTTTGGAAAGGAGGGA 59.173 38.462 0.00 0.00 0.00 4.20
2368 2420 7.012421 CGTTCTTATATTTTGGAAAGGAGGGAG 59.988 40.741 0.00 0.00 0.00 4.30
2379 2431 6.481643 TGGAAAGGAGGGAGTAGTATTTTTG 58.518 40.000 0.00 0.00 0.00 2.44
2434 2491 2.632996 CACCAGGAACCTCAGTAGACAA 59.367 50.000 0.00 0.00 0.00 3.18
2437 2494 4.256920 CCAGGAACCTCAGTAGACAAATG 58.743 47.826 0.00 0.00 0.00 2.32
2442 2507 2.093973 ACCTCAGTAGACAAATGCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
2474 2567 1.670811 AGTGCGCGGAATCTTTATTGG 59.329 47.619 8.83 0.00 0.00 3.16
2485 2578 6.418819 CGGAATCTTTATTGGTTGATTGATGC 59.581 38.462 0.00 0.00 30.41 3.91
2487 2580 7.437267 GGAATCTTTATTGGTTGATTGATGCTG 59.563 37.037 0.00 0.00 30.41 4.41
2488 2581 6.211587 TCTTTATTGGTTGATTGATGCTGG 57.788 37.500 0.00 0.00 0.00 4.85
2489 2582 2.973694 ATTGGTTGATTGATGCTGGC 57.026 45.000 0.00 0.00 0.00 4.85
2490 2583 1.630223 TTGGTTGATTGATGCTGGCA 58.370 45.000 0.00 0.00 0.00 4.92
2491 2584 0.889994 TGGTTGATTGATGCTGGCAC 59.110 50.000 0.00 0.00 0.00 5.01
2642 2744 1.911766 GAAGGACCAGACGGGGTGA 60.912 63.158 0.08 0.00 42.53 4.02
2711 2813 3.770040 ATGCCGTAGCCGAGCACA 61.770 61.111 0.00 0.00 38.69 4.57
2877 2979 0.983378 CCCGAACTCCTTCCCCATCT 60.983 60.000 0.00 0.00 0.00 2.90
2878 2980 0.912486 CCGAACTCCTTCCCCATCTT 59.088 55.000 0.00 0.00 0.00 2.40
2880 2982 1.471676 CGAACTCCTTCCCCATCTTCG 60.472 57.143 0.00 0.00 0.00 3.79
2881 2983 0.912486 AACTCCTTCCCCATCTTCGG 59.088 55.000 0.00 0.00 0.00 4.30
2883 2985 0.912486 CTCCTTCCCCATCTTCGGTT 59.088 55.000 0.00 0.00 0.00 4.44
2884 2986 1.282157 CTCCTTCCCCATCTTCGGTTT 59.718 52.381 0.00 0.00 0.00 3.27
2885 2987 1.004277 TCCTTCCCCATCTTCGGTTTG 59.996 52.381 0.00 0.00 0.00 2.93
2887 2989 0.404040 TTCCCCATCTTCGGTTTGCT 59.596 50.000 0.00 0.00 0.00 3.91
2889 2991 0.527565 CCCCATCTTCGGTTTGCTTG 59.472 55.000 0.00 0.00 0.00 4.01
2908 3032 4.347453 GGCTGCGGTTGTTGCCTG 62.347 66.667 0.00 0.00 41.92 4.85
2910 3034 3.289834 CTGCGGTTGTTGCCTGCT 61.290 61.111 0.00 0.00 0.00 4.24
2911 3035 2.832661 TGCGGTTGTTGCCTGCTT 60.833 55.556 0.00 0.00 0.00 3.91
2912 3036 2.355009 GCGGTTGTTGCCTGCTTG 60.355 61.111 0.00 0.00 0.00 4.01
2913 3037 2.355009 CGGTTGTTGCCTGCTTGC 60.355 61.111 0.00 0.00 0.00 4.01
2914 3038 2.355009 GGTTGTTGCCTGCTTGCG 60.355 61.111 0.00 0.00 0.00 4.85
2915 3039 2.412937 GTTGTTGCCTGCTTGCGT 59.587 55.556 0.00 0.00 0.00 5.24
2932 3056 1.573829 CGTATTGCGGTGTGTTGGCT 61.574 55.000 0.00 0.00 36.85 4.75
2945 3069 2.094390 GTGTTGGCTAGATGTGTCCGTA 60.094 50.000 0.00 0.00 0.00 4.02
2954 3078 5.106634 GCTAGATGTGTCCGTATACCTACTG 60.107 48.000 0.00 0.00 0.00 2.74
2955 3079 3.568853 AGATGTGTCCGTATACCTACTGC 59.431 47.826 0.00 0.00 0.00 4.40
2956 3080 3.008835 TGTGTCCGTATACCTACTGCT 57.991 47.619 0.00 0.00 0.00 4.24
2958 3082 3.765511 TGTGTCCGTATACCTACTGCTTT 59.234 43.478 0.00 0.00 0.00 3.51
2959 3083 4.142315 TGTGTCCGTATACCTACTGCTTTC 60.142 45.833 0.00 0.00 0.00 2.62
2960 3084 4.097589 GTGTCCGTATACCTACTGCTTTCT 59.902 45.833 0.00 0.00 0.00 2.52
2962 3086 4.579753 GTCCGTATACCTACTGCTTTCTCT 59.420 45.833 0.00 0.00 0.00 3.10
2963 3087 4.579340 TCCGTATACCTACTGCTTTCTCTG 59.421 45.833 0.00 0.00 0.00 3.35
2964 3088 4.338682 CCGTATACCTACTGCTTTCTCTGT 59.661 45.833 0.00 0.00 0.00 3.41
2965 3089 5.274718 CGTATACCTACTGCTTTCTCTGTG 58.725 45.833 0.00 0.00 0.00 3.66
3001 3132 2.820037 GCTGGCTAGCGACCAACC 60.820 66.667 6.22 0.00 40.67 3.77
3087 3218 2.183478 TTTGTCGGTCTGATGCACAT 57.817 45.000 0.00 0.00 0.00 3.21
3088 3219 1.441738 TTGTCGGTCTGATGCACATG 58.558 50.000 0.00 0.00 0.00 3.21
3089 3220 1.020861 TGTCGGTCTGATGCACATGC 61.021 55.000 0.00 0.00 42.50 4.06
3090 3221 0.742281 GTCGGTCTGATGCACATGCT 60.742 55.000 5.31 0.00 42.66 3.79
3091 3222 0.036105 TCGGTCTGATGCACATGCTT 60.036 50.000 5.31 0.00 42.66 3.91
3092 3223 0.806868 CGGTCTGATGCACATGCTTT 59.193 50.000 5.31 0.00 42.66 3.51
3093 3224 1.466866 CGGTCTGATGCACATGCTTTG 60.467 52.381 5.31 0.00 42.66 2.77
3094 3225 1.135199 GGTCTGATGCACATGCTTTGG 60.135 52.381 5.31 0.00 42.66 3.28
3095 3226 0.528924 TCTGATGCACATGCTTTGGC 59.471 50.000 5.31 0.00 42.66 4.52
3096 3227 0.459585 CTGATGCACATGCTTTGGCC 60.460 55.000 5.31 0.00 42.66 5.36
3097 3228 1.186267 TGATGCACATGCTTTGGCCA 61.186 50.000 0.00 0.00 42.66 5.36
3098 3229 0.037139 GATGCACATGCTTTGGCCAA 60.037 50.000 16.05 16.05 42.66 4.52
3099 3230 0.320946 ATGCACATGCTTTGGCCAAC 60.321 50.000 20.35 8.61 42.66 3.77
3100 3231 1.069427 GCACATGCTTTGGCCAACA 59.931 52.632 20.35 14.94 38.21 3.33
3101 3232 1.223417 GCACATGCTTTGGCCAACAC 61.223 55.000 20.35 14.01 38.21 3.32
3102 3233 0.104487 CACATGCTTTGGCCAACACA 59.896 50.000 20.35 19.63 37.74 3.72
3103 3234 0.829333 ACATGCTTTGGCCAACACAA 59.171 45.000 20.35 1.78 37.74 3.33
3104 3235 1.417145 ACATGCTTTGGCCAACACAAT 59.583 42.857 20.35 9.23 37.74 2.71
3105 3236 2.158784 ACATGCTTTGGCCAACACAATT 60.159 40.909 20.35 7.66 37.74 2.32
3106 3237 2.706339 TGCTTTGGCCAACACAATTT 57.294 40.000 20.35 0.00 37.74 1.82
3107 3238 3.827008 TGCTTTGGCCAACACAATTTA 57.173 38.095 20.35 0.00 37.74 1.40
3108 3239 3.726607 TGCTTTGGCCAACACAATTTAG 58.273 40.909 20.35 11.54 37.74 1.85
3109 3240 3.066380 GCTTTGGCCAACACAATTTAGG 58.934 45.455 20.35 0.00 0.00 2.69
3110 3241 2.829741 TTGGCCAACACAATTTAGGC 57.170 45.000 16.05 0.00 44.48 3.93
3111 3242 0.600557 TGGCCAACACAATTTAGGCG 59.399 50.000 0.61 0.00 46.12 5.52
3112 3243 0.108851 GGCCAACACAATTTAGGCGG 60.109 55.000 0.00 0.00 46.12 6.13
3113 3244 0.735978 GCCAACACAATTTAGGCGGC 60.736 55.000 0.00 0.00 35.42 6.53
3114 3245 0.455972 CCAACACAATTTAGGCGGCG 60.456 55.000 0.51 0.51 0.00 6.46
3115 3246 0.239879 CAACACAATTTAGGCGGCGT 59.760 50.000 9.37 0.00 0.00 5.68
3116 3247 0.239879 AACACAATTTAGGCGGCGTG 59.760 50.000 9.37 7.12 0.00 5.34
3117 3248 0.604243 ACACAATTTAGGCGGCGTGA 60.604 50.000 16.94 1.92 0.00 4.35
3118 3249 0.519519 CACAATTTAGGCGGCGTGAA 59.480 50.000 9.37 3.73 0.00 3.18
3119 3250 0.519961 ACAATTTAGGCGGCGTGAAC 59.480 50.000 9.37 0.00 0.00 3.18
3120 3251 0.519519 CAATTTAGGCGGCGTGAACA 59.480 50.000 9.37 0.00 0.00 3.18
3121 3252 0.519961 AATTTAGGCGGCGTGAACAC 59.480 50.000 9.37 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 8.215891 CTCCATTAGAGTAAATAGCCACTGCTC 61.216 44.444 0.00 0.00 41.78 4.26
454 455 2.108157 CCGCCCAGCACGCTATTA 59.892 61.111 0.00 0.00 0.00 0.98
469 470 2.354539 CTGCAAACGCCAAACCCG 60.355 61.111 0.00 0.00 0.00 5.28
470 471 1.142965 AACTGCAAACGCCAAACCC 59.857 52.632 0.00 0.00 0.00 4.11
480 481 5.009610 GGTTTAGGTGAAGATCAACTGCAAA 59.990 40.000 8.14 0.00 45.45 3.68
482 483 4.072131 GGTTTAGGTGAAGATCAACTGCA 58.928 43.478 8.14 0.00 45.45 4.41
487 488 7.521423 CGACAAATTGGTTTAGGTGAAGATCAA 60.521 37.037 0.00 0.00 0.00 2.57
527 529 0.615331 TGGCACTCATCACCTCCTTC 59.385 55.000 0.00 0.00 0.00 3.46
678 680 0.905337 CCCGGACCCAGAGAAAGAGT 60.905 60.000 0.73 0.00 0.00 3.24
715 717 1.004436 ATTCGGGTTATGGGGTTGGT 58.996 50.000 0.00 0.00 0.00 3.67
759 761 7.069344 AGGGTAATAGCCAAGCTTTATTCATT 58.931 34.615 11.41 0.00 40.44 2.57
795 797 0.028770 CACGGCGTTCTGCTCAAAAA 59.971 50.000 11.19 0.00 45.43 1.94
796 798 1.092921 ACACGGCGTTCTGCTCAAAA 61.093 50.000 11.19 0.00 45.43 2.44
928 937 2.433664 GGGTACGTCGCTGGGTTG 60.434 66.667 0.00 0.00 0.00 3.77
945 954 1.124477 GGGAGCTGGGTGGATAGAGG 61.124 65.000 0.00 0.00 0.00 3.69
1018 1027 1.954146 CCGTGCTATTATGCCGCGT 60.954 57.895 4.92 0.00 0.00 6.01
1106 1121 0.107848 GGTGTGTATTGCTAGGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
1111 1126 3.334583 ACTGGTGGTGTGTATTGCTAG 57.665 47.619 0.00 0.00 0.00 3.42
1114 1129 1.730064 CGTACTGGTGGTGTGTATTGC 59.270 52.381 0.00 0.00 0.00 3.56
1444 1462 5.766174 AGATTCTAAGTATCCACGAGAGGTC 59.234 44.000 0.00 0.00 0.00 3.85
1627 1645 5.954296 TTCAGAGAAAAATTGCAGAGGAG 57.046 39.130 0.00 0.00 0.00 3.69
1637 1655 7.446625 AGCGGCTCATATAATTCAGAGAAAAAT 59.553 33.333 0.00 0.00 0.00 1.82
1827 1857 0.402887 TCTGTCCTCCTACCGTGTCA 59.597 55.000 0.00 0.00 0.00 3.58
1856 1886 2.093553 CCAGCAAAGAAGAGGGAGAGAG 60.094 54.545 0.00 0.00 0.00 3.20
1871 1901 1.000060 GAACTGCAGAAATGCCAGCAA 60.000 47.619 23.35 0.00 36.44 3.91
1872 1902 0.599558 GAACTGCAGAAATGCCAGCA 59.400 50.000 23.35 0.00 35.43 4.41
1873 1903 0.886563 AGAACTGCAGAAATGCCAGC 59.113 50.000 23.35 0.00 0.00 4.85
1874 1904 2.156917 TGAGAACTGCAGAAATGCCAG 58.843 47.619 23.35 0.00 0.00 4.85
1875 1905 2.275134 TGAGAACTGCAGAAATGCCA 57.725 45.000 23.35 7.41 0.00 4.92
1876 1906 2.223203 CGATGAGAACTGCAGAAATGCC 60.223 50.000 23.35 4.76 0.00 4.40
1877 1907 2.223203 CCGATGAGAACTGCAGAAATGC 60.223 50.000 23.35 6.08 0.00 3.56
1878 1908 2.223203 GCCGATGAGAACTGCAGAAATG 60.223 50.000 23.35 0.00 0.00 2.32
1913 1943 2.805671 TGATACACCTGAAACAAGCACG 59.194 45.455 0.00 0.00 0.00 5.34
1990 2020 4.397481 TCTGATCATGTTGGCTGTAGAG 57.603 45.455 0.00 0.00 0.00 2.43
1991 2021 4.700700 CATCTGATCATGTTGGCTGTAGA 58.299 43.478 0.00 0.00 0.00 2.59
2003 2033 1.483827 AGGTCACACGCATCTGATCAT 59.516 47.619 0.00 0.00 0.00 2.45
2004 2034 0.897621 AGGTCACACGCATCTGATCA 59.102 50.000 0.00 0.00 0.00 2.92
2005 2035 1.565305 GAGGTCACACGCATCTGATC 58.435 55.000 0.00 0.00 0.00 2.92
2071 2106 4.924305 ATCGCAATAACAAATGGCAGAT 57.076 36.364 0.00 0.00 0.00 2.90
2072 2107 4.398988 AGAATCGCAATAACAAATGGCAGA 59.601 37.500 0.00 0.00 0.00 4.26
2073 2108 4.675510 AGAATCGCAATAACAAATGGCAG 58.324 39.130 0.00 0.00 0.00 4.85
2074 2109 4.717233 AGAATCGCAATAACAAATGGCA 57.283 36.364 0.00 0.00 0.00 4.92
2075 2110 4.864247 ACAAGAATCGCAATAACAAATGGC 59.136 37.500 0.00 0.00 0.00 4.40
2076 2111 6.092092 TCACAAGAATCGCAATAACAAATGG 58.908 36.000 0.00 0.00 0.00 3.16
2077 2112 6.252015 CCTCACAAGAATCGCAATAACAAATG 59.748 38.462 0.00 0.00 0.00 2.32
2078 2113 6.071952 ACCTCACAAGAATCGCAATAACAAAT 60.072 34.615 0.00 0.00 0.00 2.32
2079 2114 5.240623 ACCTCACAAGAATCGCAATAACAAA 59.759 36.000 0.00 0.00 0.00 2.83
2089 2124 7.033530 AGTAGATAGAACCTCACAAGAATCG 57.966 40.000 0.00 0.00 0.00 3.34
2169 2206 8.131731 GGACATACTTCTGATTTATTTTCCTGC 58.868 37.037 0.00 0.00 0.00 4.85
2200 2237 0.035439 ATGGGGGCAGTTCTAACACG 60.035 55.000 0.00 0.00 0.00 4.49
2242 2294 7.768240 TCGTGAATTATGTTTGCTCTACTCTA 58.232 34.615 0.00 0.00 0.00 2.43
2243 2295 6.631016 TCGTGAATTATGTTTGCTCTACTCT 58.369 36.000 0.00 0.00 0.00 3.24
2244 2296 6.752351 TCTCGTGAATTATGTTTGCTCTACTC 59.248 38.462 0.00 0.00 0.00 2.59
2245 2297 6.631016 TCTCGTGAATTATGTTTGCTCTACT 58.369 36.000 0.00 0.00 0.00 2.57
2246 2298 6.019479 CCTCTCGTGAATTATGTTTGCTCTAC 60.019 42.308 0.00 0.00 0.00 2.59
2255 2307 4.631813 GTCTTTGCCTCTCGTGAATTATGT 59.368 41.667 0.00 0.00 0.00 2.29
2288 2340 4.043812 TGTGGGACAGAGGTAGTAGTAGTT 59.956 45.833 0.00 0.00 41.80 2.24
2290 2342 4.232188 TGTGGGACAGAGGTAGTAGTAG 57.768 50.000 0.00 0.00 41.80 2.57
2291 2343 4.338879 GTTGTGGGACAGAGGTAGTAGTA 58.661 47.826 0.00 0.00 41.80 1.82
2292 2344 3.163467 GTTGTGGGACAGAGGTAGTAGT 58.837 50.000 0.00 0.00 41.80 2.73
2293 2345 2.163815 CGTTGTGGGACAGAGGTAGTAG 59.836 54.545 0.00 0.00 41.80 2.57
2294 2346 2.165167 CGTTGTGGGACAGAGGTAGTA 58.835 52.381 0.00 0.00 41.80 1.82
2295 2347 0.966920 CGTTGTGGGACAGAGGTAGT 59.033 55.000 0.00 0.00 41.80 2.73
2296 2348 0.966920 ACGTTGTGGGACAGAGGTAG 59.033 55.000 0.00 0.00 41.80 3.18
2297 2349 1.416243 AACGTTGTGGGACAGAGGTA 58.584 50.000 0.00 0.00 41.80 3.08
2298 2350 0.544697 AAACGTTGTGGGACAGAGGT 59.455 50.000 0.00 0.00 41.80 3.85
2299 2351 1.675552 AAAACGTTGTGGGACAGAGG 58.324 50.000 0.00 0.00 41.80 3.69
2300 2352 2.680841 TCAAAAACGTTGTGGGACAGAG 59.319 45.455 0.00 0.00 41.80 3.35
2301 2353 2.420722 GTCAAAAACGTTGTGGGACAGA 59.579 45.455 15.17 0.00 41.80 3.41
2302 2354 2.162608 TGTCAAAAACGTTGTGGGACAG 59.837 45.455 17.64 0.00 41.80 3.51
2303 2355 2.095161 GTGTCAAAAACGTTGTGGGACA 60.095 45.455 17.64 17.64 0.00 4.02
2304 2356 2.162809 AGTGTCAAAAACGTTGTGGGAC 59.837 45.455 13.81 13.81 0.00 4.46
2305 2357 2.438411 AGTGTCAAAAACGTTGTGGGA 58.562 42.857 0.00 0.00 0.00 4.37
2306 2358 2.931512 AGTGTCAAAAACGTTGTGGG 57.068 45.000 0.00 0.00 0.00 4.61
2307 2359 5.336744 ACATTAGTGTCAAAAACGTTGTGG 58.663 37.500 0.00 0.00 31.41 4.17
2308 2360 7.184106 ACTACATTAGTGTCAAAAACGTTGTG 58.816 34.615 0.00 3.48 39.77 3.33
2309 2361 7.311364 ACTACATTAGTGTCAAAAACGTTGT 57.689 32.000 0.00 0.00 39.77 3.32
2338 2390 9.908152 CTCCTTTCCAAAATATAAGAACGTTTT 57.092 29.630 0.46 0.00 0.00 2.43
2339 2391 8.520351 CCTCCTTTCCAAAATATAAGAACGTTT 58.480 33.333 0.46 0.00 0.00 3.60
2340 2392 7.122204 CCCTCCTTTCCAAAATATAAGAACGTT 59.878 37.037 0.00 0.00 0.00 3.99
2341 2393 6.602009 CCCTCCTTTCCAAAATATAAGAACGT 59.398 38.462 0.00 0.00 0.00 3.99
2342 2394 6.826741 TCCCTCCTTTCCAAAATATAAGAACG 59.173 38.462 0.00 0.00 0.00 3.95
2343 2395 7.834681 ACTCCCTCCTTTCCAAAATATAAGAAC 59.165 37.037 0.00 0.00 0.00 3.01
2344 2396 7.939781 ACTCCCTCCTTTCCAAAATATAAGAA 58.060 34.615 0.00 0.00 0.00 2.52
2345 2397 7.525158 ACTCCCTCCTTTCCAAAATATAAGA 57.475 36.000 0.00 0.00 0.00 2.10
2346 2398 8.495260 ACTACTCCCTCCTTTCCAAAATATAAG 58.505 37.037 0.00 0.00 0.00 1.73
2347 2399 8.401955 ACTACTCCCTCCTTTCCAAAATATAA 57.598 34.615 0.00 0.00 0.00 0.98
2348 2400 9.684702 ATACTACTCCCTCCTTTCCAAAATATA 57.315 33.333 0.00 0.00 0.00 0.86
2349 2401 6.910259 ACTACTCCCTCCTTTCCAAAATAT 57.090 37.500 0.00 0.00 0.00 1.28
2350 2402 8.401955 AATACTACTCCCTCCTTTCCAAAATA 57.598 34.615 0.00 0.00 0.00 1.40
2351 2403 6.910259 ATACTACTCCCTCCTTTCCAAAAT 57.090 37.500 0.00 0.00 0.00 1.82
2352 2404 6.713731 AATACTACTCCCTCCTTTCCAAAA 57.286 37.500 0.00 0.00 0.00 2.44
2353 2405 6.713731 AAATACTACTCCCTCCTTTCCAAA 57.286 37.500 0.00 0.00 0.00 3.28
2354 2406 6.713731 AAAATACTACTCCCTCCTTTCCAA 57.286 37.500 0.00 0.00 0.00 3.53
2355 2407 6.045106 ACAAAAATACTACTCCCTCCTTTCCA 59.955 38.462 0.00 0.00 0.00 3.53
2356 2408 6.374613 CACAAAAATACTACTCCCTCCTTTCC 59.625 42.308 0.00 0.00 0.00 3.13
2357 2409 6.940867 ACACAAAAATACTACTCCCTCCTTTC 59.059 38.462 0.00 0.00 0.00 2.62
2358 2410 6.715264 CACACAAAAATACTACTCCCTCCTTT 59.285 38.462 0.00 0.00 0.00 3.11
2359 2411 6.238648 CACACAAAAATACTACTCCCTCCTT 58.761 40.000 0.00 0.00 0.00 3.36
2360 2412 5.803470 GCACACAAAAATACTACTCCCTCCT 60.803 44.000 0.00 0.00 0.00 3.69
2361 2413 4.395231 GCACACAAAAATACTACTCCCTCC 59.605 45.833 0.00 0.00 0.00 4.30
2362 2414 4.092968 CGCACACAAAAATACTACTCCCTC 59.907 45.833 0.00 0.00 0.00 4.30
2363 2415 4.000988 CGCACACAAAAATACTACTCCCT 58.999 43.478 0.00 0.00 0.00 4.20
2364 2416 3.749609 ACGCACACAAAAATACTACTCCC 59.250 43.478 0.00 0.00 0.00 4.30
2365 2417 5.865552 TCTACGCACACAAAAATACTACTCC 59.134 40.000 0.00 0.00 0.00 3.85
2366 2418 6.805271 TCTCTACGCACACAAAAATACTACTC 59.195 38.462 0.00 0.00 0.00 2.59
2367 2419 6.684686 TCTCTACGCACACAAAAATACTACT 58.315 36.000 0.00 0.00 0.00 2.57
2368 2420 6.939551 TCTCTACGCACACAAAAATACTAC 57.060 37.500 0.00 0.00 0.00 2.73
2379 2431 3.858040 CGCATTTCTCTACGCACAC 57.142 52.632 0.00 0.00 0.00 3.82
2434 2491 1.672356 GCAGGTGTGTCGGAGCATT 60.672 57.895 0.00 0.00 0.00 3.56
2437 2494 2.280797 TTGCAGGTGTGTCGGAGC 60.281 61.111 0.00 0.00 0.00 4.70
2442 2507 2.633657 CGCACTTGCAGGTGTGTC 59.366 61.111 28.61 13.35 41.22 3.67
2463 2528 7.270047 CCAGCATCAATCAACCAATAAAGATT 58.730 34.615 0.00 0.00 0.00 2.40
2474 2567 0.179156 CCGTGCCAGCATCAATCAAC 60.179 55.000 0.00 0.00 0.00 3.18
2887 2989 3.222855 CAACAACCGCAGCCCCAA 61.223 61.111 0.00 0.00 0.00 4.12
2902 3026 1.212490 GCAATACGCAAGCAGGCAA 59.788 52.632 0.50 0.00 45.62 4.52
2907 3031 1.963855 ACACCGCAATACGCAAGCA 60.964 52.632 0.00 0.00 42.60 3.91
2908 3032 1.511887 CACACCGCAATACGCAAGC 60.512 57.895 0.00 0.00 42.60 4.01
2909 3033 0.237235 AACACACCGCAATACGCAAG 59.763 50.000 0.00 0.00 42.60 4.01
2910 3034 0.040870 CAACACACCGCAATACGCAA 60.041 50.000 0.00 0.00 42.60 4.85
2911 3035 1.571953 CAACACACCGCAATACGCA 59.428 52.632 0.00 0.00 42.60 5.24
2912 3036 1.154301 CCAACACACCGCAATACGC 60.154 57.895 0.00 0.00 41.76 4.42
2913 3037 1.154301 GCCAACACACCGCAATACG 60.154 57.895 0.00 0.00 43.15 3.06
2914 3038 1.396996 CTAGCCAACACACCGCAATAC 59.603 52.381 0.00 0.00 0.00 1.89
2915 3039 1.276705 TCTAGCCAACACACCGCAATA 59.723 47.619 0.00 0.00 0.00 1.90
2922 3046 2.076863 GGACACATCTAGCCAACACAC 58.923 52.381 0.00 0.00 0.00 3.82
2932 3056 4.758674 GCAGTAGGTATACGGACACATCTA 59.241 45.833 8.11 0.00 36.97 1.98
2945 3069 3.452627 CCCACAGAGAAAGCAGTAGGTAT 59.547 47.826 0.00 0.00 0.00 2.73
2954 3078 0.110486 TGAACCCCCACAGAGAAAGC 59.890 55.000 0.00 0.00 0.00 3.51
2955 3079 2.106511 TCTTGAACCCCCACAGAGAAAG 59.893 50.000 0.00 0.00 0.00 2.62
2956 3080 2.131854 TCTTGAACCCCCACAGAGAAA 58.868 47.619 0.00 0.00 0.00 2.52
2958 3082 2.044793 ATCTTGAACCCCCACAGAGA 57.955 50.000 0.00 0.00 0.00 3.10
2959 3083 3.370953 CCTTATCTTGAACCCCCACAGAG 60.371 52.174 0.00 0.00 0.00 3.35
2960 3084 2.576191 CCTTATCTTGAACCCCCACAGA 59.424 50.000 0.00 0.00 0.00 3.41
2962 3086 2.576191 CTCCTTATCTTGAACCCCCACA 59.424 50.000 0.00 0.00 0.00 4.17
2963 3087 2.092375 CCTCCTTATCTTGAACCCCCAC 60.092 54.545 0.00 0.00 0.00 4.61
2964 3088 2.205342 CCTCCTTATCTTGAACCCCCA 58.795 52.381 0.00 0.00 0.00 4.96
2965 3089 1.133761 GCCTCCTTATCTTGAACCCCC 60.134 57.143 0.00 0.00 0.00 5.40
3001 3132 0.447801 AAAATAGGCAGCGCAAGTCG 59.552 50.000 11.47 0.00 42.12 4.18
3049 3180 2.945080 ATGCATCAGATTCACCGGAT 57.055 45.000 9.46 0.00 0.00 4.18
3087 3218 2.706339 AAATTGTGTTGGCCAAAGCA 57.294 40.000 22.47 18.86 42.56 3.91
3088 3219 3.066380 CCTAAATTGTGTTGGCCAAAGC 58.934 45.455 22.47 16.32 38.76 3.51
3089 3220 3.066380 GCCTAAATTGTGTTGGCCAAAG 58.934 45.455 22.47 11.24 37.81 2.77
3090 3221 2.546795 CGCCTAAATTGTGTTGGCCAAA 60.547 45.455 22.47 4.55 40.40 3.28
3091 3222 1.000283 CGCCTAAATTGTGTTGGCCAA 60.000 47.619 16.05 16.05 40.40 4.52
3092 3223 0.600557 CGCCTAAATTGTGTTGGCCA 59.399 50.000 0.00 0.00 40.40 5.36
3093 3224 0.108851 CCGCCTAAATTGTGTTGGCC 60.109 55.000 0.00 0.00 40.40 5.36
3094 3225 0.735978 GCCGCCTAAATTGTGTTGGC 60.736 55.000 0.00 0.00 40.14 4.52
3095 3226 0.455972 CGCCGCCTAAATTGTGTTGG 60.456 55.000 0.00 0.00 0.00 3.77
3096 3227 0.239879 ACGCCGCCTAAATTGTGTTG 59.760 50.000 0.00 0.00 0.00 3.33
3097 3228 0.239879 CACGCCGCCTAAATTGTGTT 59.760 50.000 0.00 0.00 0.00 3.32
3098 3229 0.604243 TCACGCCGCCTAAATTGTGT 60.604 50.000 0.00 0.00 0.00 3.72
3099 3230 0.519519 TTCACGCCGCCTAAATTGTG 59.480 50.000 0.00 0.00 0.00 3.33
3100 3231 0.519961 GTTCACGCCGCCTAAATTGT 59.480 50.000 0.00 0.00 0.00 2.71
3101 3232 0.519519 TGTTCACGCCGCCTAAATTG 59.480 50.000 0.00 0.00 0.00 2.32
3102 3233 0.519961 GTGTTCACGCCGCCTAAATT 59.480 50.000 0.00 0.00 0.00 1.82
3103 3234 1.632046 CGTGTTCACGCCGCCTAAAT 61.632 55.000 12.19 0.00 0.00 1.40
3104 3235 2.311701 CGTGTTCACGCCGCCTAAA 61.312 57.895 12.19 0.00 0.00 1.85
3105 3236 2.735478 CGTGTTCACGCCGCCTAA 60.735 61.111 12.19 0.00 0.00 2.69
3106 3237 3.672447 TCGTGTTCACGCCGCCTA 61.672 61.111 18.63 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.