Multiple sequence alignment - TraesCS4A01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G091200 chr4A 100.000 3442 0 0 950 4391 97870264 97873705 0.000000e+00 6357
1 TraesCS4A01G091200 chr4A 100.000 578 0 0 1 578 97869315 97869892 0.000000e+00 1068
2 TraesCS4A01G091200 chr4D 95.829 3500 77 25 950 4391 367048186 367044698 0.000000e+00 5590
3 TraesCS4A01G091200 chr4D 92.213 488 27 5 98 578 367048768 367048285 0.000000e+00 680
4 TraesCS4A01G091200 chr4B 96.397 3331 107 9 1070 4389 451910851 451907523 0.000000e+00 5474
5 TraesCS4A01G091200 chr4B 93.883 376 14 4 210 578 451911676 451911303 3.840000e-155 558
6 TraesCS4A01G091200 chr4B 94.853 136 7 0 4254 4389 451907465 451907330 3.440000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G091200 chr4A 97869315 97873705 4390 False 3712.500000 6357 100.000000 1 4391 2 chr4A.!!$F1 4390
1 TraesCS4A01G091200 chr4D 367044698 367048768 4070 True 3135.000000 5590 94.021000 98 4391 2 chr4D.!!$R1 4293
2 TraesCS4A01G091200 chr4B 451907330 451911676 4346 True 2081.666667 5474 95.044333 210 4389 3 chr4B.!!$R1 4179


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.739813 GCAGGCAGTGGTAACCGTAG 60.740 60.000 0.0 0.0 0.0 3.51 F
574 581 0.926293 TTCCCAGTTCCCATCCCATC 59.074 55.000 0.0 0.0 0.0 3.51 F
2077 2329 3.624777 AGAAAATGATGAATGGCTCCGT 58.375 40.909 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1644 1895 1.006832 CCATCTACCAACGCTTTCCG 58.993 55.000 0.0 0.0 44.21 4.30 R
2150 2402 1.205655 TCGCACAAGGAGGAGAAGATG 59.794 52.381 0.0 0.0 0.00 2.90 R
3840 4119 0.398696 ACAGCCCGTTCACCATACAA 59.601 50.000 0.0 0.0 0.00 2.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.815856 AAATTGTTGCATGACACCACA 57.184 38.095 0.00 0.00 0.00 4.17
45 46 2.798976 ATTGTTGCATGACACCACAC 57.201 45.000 0.00 0.00 0.00 3.82
46 47 1.467920 TTGTTGCATGACACCACACA 58.532 45.000 0.00 0.00 0.00 3.72
47 48 1.689984 TGTTGCATGACACCACACAT 58.310 45.000 0.00 0.00 0.00 3.21
48 49 2.856222 TGTTGCATGACACCACACATA 58.144 42.857 0.00 0.00 0.00 2.29
49 50 3.419943 TGTTGCATGACACCACACATAT 58.580 40.909 0.00 0.00 0.00 1.78
50 51 4.583871 TGTTGCATGACACCACACATATA 58.416 39.130 0.00 0.00 0.00 0.86
51 52 5.006386 TGTTGCATGACACCACACATATAA 58.994 37.500 0.00 0.00 0.00 0.98
52 53 5.651576 TGTTGCATGACACCACACATATAAT 59.348 36.000 0.00 0.00 0.00 1.28
53 54 6.825721 TGTTGCATGACACCACACATATAATA 59.174 34.615 0.00 0.00 0.00 0.98
54 55 6.859420 TGCATGACACCACACATATAATAC 57.141 37.500 0.00 0.00 0.00 1.89
55 56 6.591001 TGCATGACACCACACATATAATACT 58.409 36.000 0.00 0.00 0.00 2.12
56 57 6.705825 TGCATGACACCACACATATAATACTC 59.294 38.462 0.00 0.00 0.00 2.59
57 58 6.931281 GCATGACACCACACATATAATACTCT 59.069 38.462 0.00 0.00 0.00 3.24
58 59 7.442364 GCATGACACCACACATATAATACTCTT 59.558 37.037 0.00 0.00 0.00 2.85
59 60 9.330063 CATGACACCACACATATAATACTCTTT 57.670 33.333 0.00 0.00 0.00 2.52
82 83 9.978044 CTTTATTGTAGAGGTAGTAACATACCC 57.022 37.037 0.00 0.00 45.48 3.69
83 84 9.491406 TTTATTGTAGAGGTAGTAACATACCCA 57.509 33.333 0.00 0.00 45.48 4.51
84 85 9.664777 TTATTGTAGAGGTAGTAACATACCCAT 57.335 33.333 0.00 0.00 45.48 4.00
85 86 7.983166 TTGTAGAGGTAGTAACATACCCATT 57.017 36.000 0.00 0.00 45.48 3.16
86 87 7.356089 TGTAGAGGTAGTAACATACCCATTG 57.644 40.000 0.00 0.00 45.48 2.82
87 88 6.899075 TGTAGAGGTAGTAACATACCCATTGT 59.101 38.462 0.00 0.00 45.48 2.71
88 89 6.235231 AGAGGTAGTAACATACCCATTGTG 57.765 41.667 0.00 0.00 45.48 3.33
89 90 5.962031 AGAGGTAGTAACATACCCATTGTGA 59.038 40.000 0.00 0.00 45.48 3.58
90 91 5.985911 AGGTAGTAACATACCCATTGTGAC 58.014 41.667 0.00 0.00 45.48 3.67
91 92 5.724854 AGGTAGTAACATACCCATTGTGACT 59.275 40.000 0.00 0.00 45.48 3.41
92 93 6.899075 AGGTAGTAACATACCCATTGTGACTA 59.101 38.462 0.00 0.00 45.48 2.59
93 94 7.069578 AGGTAGTAACATACCCATTGTGACTAG 59.930 40.741 2.03 0.00 45.48 2.57
94 95 6.869206 AGTAACATACCCATTGTGACTAGT 57.131 37.500 0.00 0.00 37.08 2.57
95 96 6.875076 AGTAACATACCCATTGTGACTAGTC 58.125 40.000 16.32 16.32 37.08 2.59
96 97 6.668283 AGTAACATACCCATTGTGACTAGTCT 59.332 38.462 23.01 0.19 37.08 3.24
102 103 5.084519 ACCCATTGTGACTAGTCTTAGTGA 58.915 41.667 23.01 0.00 40.21 3.41
105 106 6.295349 CCCATTGTGACTAGTCTTAGTGAGTT 60.295 42.308 23.01 0.00 40.21 3.01
169 170 4.949856 AGAAAATTGAGTCACACCACTGTT 59.050 37.500 0.00 0.00 0.00 3.16
187 188 4.161001 ACTGTTCGGACCTAATAACGGAAT 59.839 41.667 10.10 0.00 33.42 3.01
252 253 6.055231 TGCATAGATATTTGCCGTGTTTAC 57.945 37.500 0.22 0.00 38.08 2.01
260 261 7.968405 AGATATTTGCCGTGTTTACAAGATTTC 59.032 33.333 0.00 0.00 0.00 2.17
315 316 0.739813 GCAGGCAGTGGTAACCGTAG 60.740 60.000 0.00 0.00 0.00 3.51
330 331 3.760738 ACCGTAGAAGCCCTATACCTAC 58.239 50.000 0.00 0.00 0.00 3.18
367 368 2.158370 AGGAAGGAAAAACCCGACCAAT 60.158 45.455 0.00 0.00 40.05 3.16
561 568 1.818674 CGTCCCCTGAAAATTTCCCAG 59.181 52.381 3.00 11.51 0.00 4.45
574 581 0.926293 TTCCCAGTTCCCATCCCATC 59.074 55.000 0.00 0.00 0.00 3.51
1528 1776 3.913548 TGTTCCGGTTCACAAATGATG 57.086 42.857 0.00 0.00 33.85 3.07
1587 1837 8.928270 TCTCTTTCTTGTCCTACGAATTAATC 57.072 34.615 0.00 0.00 0.00 1.75
1644 1895 9.950680 TCTTCAGAATTGTGTTTTGTTCTATTC 57.049 29.630 2.11 0.00 30.29 1.75
1651 1902 5.516090 TGTGTTTTGTTCTATTCGGAAAGC 58.484 37.500 0.00 0.00 0.00 3.51
1775 2026 6.611381 TGTAAAACATCATGCTACTCTTTGC 58.389 36.000 0.00 0.00 0.00 3.68
1931 2182 6.591062 TGAAAAGCAGATTATCAAAATGGTGC 59.409 34.615 0.00 0.00 0.00 5.01
2077 2329 3.624777 AGAAAATGATGAATGGCTCCGT 58.375 40.909 0.00 0.00 0.00 4.69
2337 2589 2.024176 TTCCCTCCTTCAGTACAGCA 57.976 50.000 0.00 0.00 0.00 4.41
2422 2674 4.451900 TCAAGAAGTTGGACCTTCAGTTC 58.548 43.478 3.99 0.00 42.68 3.01
2556 2808 7.147828 CCTGTCTGGAAGTCTGATAGTGAATAA 60.148 40.741 0.00 0.00 38.35 1.40
2635 2887 5.126699 AGGAGATCGAGGGTTAGAAGTTA 57.873 43.478 0.00 0.00 0.00 2.24
2685 2937 2.771943 ACTCAGAGTCGAGAGAGGAGAT 59.228 50.000 18.64 0.00 43.49 2.75
2820 3072 1.174783 CAAATGCAGCTCTTGAGGCT 58.825 50.000 0.00 0.00 41.07 4.58
2826 3078 1.307097 CAGCTCTTGAGGCTATTGGC 58.693 55.000 0.00 0.00 38.03 4.52
2829 3081 0.462581 CTCTTGAGGCTATTGGCGCA 60.463 55.000 10.83 2.89 45.59 6.09
3370 3622 2.436173 CCTCAGTCAGTAATTCCCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
3381 3633 1.264749 TTCCCCTCCATCCGTCAGTG 61.265 60.000 0.00 0.00 0.00 3.66
3435 3687 3.788333 ACATACATGTTTGATGCCAGC 57.212 42.857 21.17 0.00 37.90 4.85
3436 3688 3.090790 ACATACATGTTTGATGCCAGCA 58.909 40.909 21.17 0.00 37.90 4.41
3445 3697 0.758310 TGATGCCAGCAAAACCCACA 60.758 50.000 0.00 0.00 0.00 4.17
3529 3782 0.109342 ACCCACTCTGAACTGCCTTG 59.891 55.000 0.00 0.00 0.00 3.61
3698 3951 4.069304 GCCCACTGTATTGTTGTTCTACA 58.931 43.478 0.00 0.00 0.00 2.74
3763 4042 6.210385 TCTGCACAATGTTATGTTTAACCCAT 59.790 34.615 0.00 0.00 37.49 4.00
3819 4098 7.201821 CCTCAGTTTTACTGGTTGTGATTTTCT 60.202 37.037 6.96 0.00 45.94 2.52
3988 4271 5.808042 ACATGAGATTCTGCATAACACAC 57.192 39.130 0.00 0.00 0.00 3.82
3989 4272 4.330894 ACATGAGATTCTGCATAACACACG 59.669 41.667 0.00 0.00 0.00 4.49
3999 4288 6.960468 TCTGCATAACACACGAATTTTACAA 58.040 32.000 0.00 0.00 0.00 2.41
4057 4347 7.143052 AGGGGAGAAGGTAGAGAAAGATATTT 58.857 38.462 0.00 0.00 0.00 1.40
4102 4392 3.190337 GCTTTTGCACAGGAAGCAG 57.810 52.632 14.76 0.00 43.89 4.24
4103 4393 0.942884 GCTTTTGCACAGGAAGCAGC 60.943 55.000 14.76 0.00 43.89 5.25
4167 4476 3.722555 TTCGACAAATGATGTTCGAGC 57.277 42.857 0.00 0.00 44.12 5.03
4347 4854 8.909708 TGAAATAAAGGAAAATTGCAGTATCG 57.090 30.769 0.00 0.00 0.00 2.92
4348 4855 8.735315 TGAAATAAAGGAAAATTGCAGTATCGA 58.265 29.630 0.00 0.00 0.00 3.59
4349 4856 9.567848 GAAATAAAGGAAAATTGCAGTATCGAA 57.432 29.630 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.689984 ATGTGTGGTGTCATGCAACA 58.310 45.000 4.08 4.08 43.58 3.33
29 30 5.559427 TTATATGTGTGGTGTCATGCAAC 57.441 39.130 0.00 0.00 34.76 4.17
30 31 7.053498 AGTATTATATGTGTGGTGTCATGCAA 58.947 34.615 0.00 0.00 0.00 4.08
31 32 6.591001 AGTATTATATGTGTGGTGTCATGCA 58.409 36.000 0.00 0.00 0.00 3.96
32 33 6.931281 AGAGTATTATATGTGTGGTGTCATGC 59.069 38.462 0.00 0.00 0.00 4.06
33 34 8.893219 AAGAGTATTATATGTGTGGTGTCATG 57.107 34.615 0.00 0.00 0.00 3.07
56 57 9.978044 GGGTATGTTACTACCTCTACAATAAAG 57.022 37.037 9.60 0.00 40.90 1.85
57 58 9.491406 TGGGTATGTTACTACCTCTACAATAAA 57.509 33.333 9.60 0.00 40.90 1.40
58 59 9.664777 ATGGGTATGTTACTACCTCTACAATAA 57.335 33.333 9.60 0.00 40.90 1.40
59 60 9.664777 AATGGGTATGTTACTACCTCTACAATA 57.335 33.333 9.60 0.00 40.90 1.90
60 61 8.429641 CAATGGGTATGTTACTACCTCTACAAT 58.570 37.037 9.60 0.00 40.90 2.71
61 62 7.400915 ACAATGGGTATGTTACTACCTCTACAA 59.599 37.037 9.60 0.00 40.90 2.41
62 63 6.899075 ACAATGGGTATGTTACTACCTCTACA 59.101 38.462 9.60 0.00 40.90 2.74
63 64 7.069085 TCACAATGGGTATGTTACTACCTCTAC 59.931 40.741 9.60 0.00 40.90 2.59
64 65 7.069085 GTCACAATGGGTATGTTACTACCTCTA 59.931 40.741 9.60 1.19 40.90 2.43
65 66 5.962031 TCACAATGGGTATGTTACTACCTCT 59.038 40.000 9.60 0.00 40.90 3.69
66 67 6.047231 GTCACAATGGGTATGTTACTACCTC 58.953 44.000 9.60 3.47 40.90 3.85
67 68 5.724854 AGTCACAATGGGTATGTTACTACCT 59.275 40.000 9.60 0.00 40.90 3.08
68 69 5.985911 AGTCACAATGGGTATGTTACTACC 58.014 41.667 3.49 3.49 40.46 3.18
69 70 7.779073 ACTAGTCACAATGGGTATGTTACTAC 58.221 38.462 0.00 0.00 36.78 2.73
70 71 7.837689 AGACTAGTCACAATGGGTATGTTACTA 59.162 37.037 24.44 0.00 36.78 1.82
71 72 6.668283 AGACTAGTCACAATGGGTATGTTACT 59.332 38.462 24.44 0.00 38.44 2.24
72 73 6.875076 AGACTAGTCACAATGGGTATGTTAC 58.125 40.000 24.44 0.00 0.00 2.50
73 74 7.490657 AAGACTAGTCACAATGGGTATGTTA 57.509 36.000 24.44 0.00 0.00 2.41
74 75 6.374417 AAGACTAGTCACAATGGGTATGTT 57.626 37.500 24.44 2.72 0.00 2.71
75 76 6.668283 ACTAAGACTAGTCACAATGGGTATGT 59.332 38.462 24.44 4.72 32.61 2.29
76 77 6.980978 CACTAAGACTAGTCACAATGGGTATG 59.019 42.308 24.44 5.34 36.14 2.39
77 78 6.895756 TCACTAAGACTAGTCACAATGGGTAT 59.104 38.462 24.44 0.00 36.14 2.73
78 79 6.250711 TCACTAAGACTAGTCACAATGGGTA 58.749 40.000 24.44 3.30 36.14 3.69
79 80 5.084519 TCACTAAGACTAGTCACAATGGGT 58.915 41.667 24.44 9.95 36.14 4.51
80 81 5.186021 ACTCACTAAGACTAGTCACAATGGG 59.814 44.000 24.44 17.81 36.14 4.00
81 82 6.274157 ACTCACTAAGACTAGTCACAATGG 57.726 41.667 24.44 11.63 36.14 3.16
82 83 7.653713 ACAAACTCACTAAGACTAGTCACAATG 59.346 37.037 24.44 16.08 36.14 2.82
83 84 7.727181 ACAAACTCACTAAGACTAGTCACAAT 58.273 34.615 24.44 10.13 36.14 2.71
84 85 7.108841 ACAAACTCACTAAGACTAGTCACAA 57.891 36.000 24.44 8.44 36.14 3.33
85 86 6.710597 ACAAACTCACTAAGACTAGTCACA 57.289 37.500 24.44 10.55 36.14 3.58
139 140 9.959749 GTGGTGTGACTCAATTTTCTATTTTTA 57.040 29.630 0.00 0.00 0.00 1.52
145 146 5.680619 ACAGTGGTGTGACTCAATTTTCTA 58.319 37.500 0.00 0.00 34.75 2.10
147 148 4.900635 ACAGTGGTGTGACTCAATTTTC 57.099 40.909 0.00 0.00 34.75 2.29
148 149 4.201910 CGAACAGTGGTGTGACTCAATTTT 60.202 41.667 0.00 0.00 36.84 1.82
150 151 2.872245 CGAACAGTGGTGTGACTCAATT 59.128 45.455 0.00 0.00 36.84 2.32
151 152 2.483876 CGAACAGTGGTGTGACTCAAT 58.516 47.619 0.00 0.00 36.84 2.57
157 158 1.046472 AGGTCCGAACAGTGGTGTGA 61.046 55.000 0.00 0.00 36.84 3.58
164 165 3.091545 TCCGTTATTAGGTCCGAACAGT 58.908 45.455 0.00 0.00 0.00 3.55
169 170 5.182001 GCTACTATTCCGTTATTAGGTCCGA 59.818 44.000 0.00 0.00 0.00 4.55
304 305 2.530460 TAGGGCTTCTACGGTTACCA 57.470 50.000 1.13 0.00 0.00 3.25
315 316 3.510753 GCTAGGTGTAGGTATAGGGCTTC 59.489 52.174 0.00 0.00 0.00 3.86
330 331 0.914417 TCCTTTCCCTGGGCTAGGTG 60.914 60.000 23.90 7.55 45.80 4.00
367 368 2.723273 TCTTATCTCTCCGTGCTGTGA 58.277 47.619 0.00 0.00 0.00 3.58
543 544 3.506398 GAACTGGGAAATTTTCAGGGGA 58.494 45.455 19.67 0.00 33.19 4.81
963 970 4.615815 ATCTGCGCCCCGATCTGC 62.616 66.667 4.18 0.00 0.00 4.26
1528 1776 6.869421 ATTAAAACGAACTAATGCATGCAC 57.131 33.333 25.37 8.20 0.00 4.57
1644 1895 1.006832 CCATCTACCAACGCTTTCCG 58.993 55.000 0.00 0.00 44.21 4.30
1651 1902 3.343617 ACAAACATCCCATCTACCAACG 58.656 45.455 0.00 0.00 0.00 4.10
1694 1945 5.527214 CCCCTTTCCAAATGAACAAAAGAAC 59.473 40.000 0.00 0.00 31.05 3.01
1775 2026 8.477256 TCCAAAGCTAGAATTATTCCCAAATTG 58.523 33.333 0.78 3.10 0.00 2.32
2150 2402 1.205655 TCGCACAAGGAGGAGAAGATG 59.794 52.381 0.00 0.00 0.00 2.90
2337 2589 3.327757 TCCCATGTAGAGCAAACTCAAGT 59.672 43.478 0.00 0.00 46.09 3.16
2422 2674 3.981071 TCCTCTGTGGTAAGGAATGTG 57.019 47.619 0.00 0.00 38.74 3.21
2635 2887 3.434319 CTTGCAGGTCCGCGCAAT 61.434 61.111 18.55 0.00 46.34 3.56
2820 3072 2.992543 GTTTTTGCTGAATGCGCCAATA 59.007 40.909 4.18 0.00 46.63 1.90
2826 3078 2.420628 TCAGGTTTTTGCTGAATGCG 57.579 45.000 0.00 0.00 46.63 4.73
2829 3081 4.853924 ATCGTTCAGGTTTTTGCTGAAT 57.146 36.364 0.00 0.00 38.99 2.57
3054 3306 1.950828 CCAGCAGTCCATCATCAGAC 58.049 55.000 0.00 0.00 0.00 3.51
3370 3622 0.824109 TAGCTTCCCACTGACGGATG 59.176 55.000 0.00 0.00 0.00 3.51
3381 3633 2.557056 GTGGTGGTCTTTTTAGCTTCCC 59.443 50.000 0.00 0.00 0.00 3.97
3435 3687 3.181491 CCTATACCGCATTGTGGGTTTTG 60.181 47.826 19.96 7.35 37.55 2.44
3436 3688 3.020984 CCTATACCGCATTGTGGGTTTT 58.979 45.455 19.96 1.97 37.55 2.43
3445 3697 2.708861 TGGAATGTCCCTATACCGCATT 59.291 45.455 0.00 0.00 35.03 3.56
3529 3782 5.395214 CCAAAAATGTTGCCCCTAAGATACC 60.395 44.000 0.00 0.00 0.00 2.73
3698 3951 8.789762 GGTACAACAACTAATCCAATACTGTTT 58.210 33.333 0.00 0.00 0.00 2.83
3763 4042 5.806502 CCGCAGCAAAATTTCAAGATATTCA 59.193 36.000 0.00 0.00 0.00 2.57
3799 4078 8.528044 AAGGTAGAAAATCACAACCAGTAAAA 57.472 30.769 0.00 0.00 32.43 1.52
3840 4119 0.398696 ACAGCCCGTTCACCATACAA 59.601 50.000 0.00 0.00 0.00 2.41
3935 4216 7.881142 TCGGAAATCATGTAAAATTTCACAGT 58.119 30.769 15.54 0.00 41.53 3.55
3966 4247 4.330894 CGTGTGTTATGCAGAATCTCATGT 59.669 41.667 0.00 0.00 0.00 3.21
3988 4271 7.326063 CCTTCCTAGCAAAAGTTGTAAAATTCG 59.674 37.037 0.00 0.00 30.03 3.34
3989 4272 8.357402 TCCTTCCTAGCAAAAGTTGTAAAATTC 58.643 33.333 0.00 0.00 30.03 2.17
3999 4288 8.164070 TCTCTTAAATTCCTTCCTAGCAAAAGT 58.836 33.333 0.00 0.00 0.00 2.66
4102 4392 1.836802 ACCCTCTCAATCCTCTGAAGC 59.163 52.381 0.00 0.00 0.00 3.86
4103 4393 2.170187 CCACCCTCTCAATCCTCTGAAG 59.830 54.545 0.00 0.00 0.00 3.02
4346 4853 8.768955 CAGTCAGGATTTTTCTATAGGAATTCG 58.231 37.037 0.00 0.00 33.53 3.34
4347 4854 9.061435 CCAGTCAGGATTTTTCTATAGGAATTC 57.939 37.037 0.00 0.00 41.22 2.17
4348 4855 8.001292 CCCAGTCAGGATTTTTCTATAGGAATT 58.999 37.037 0.00 0.00 41.22 2.17
4349 4856 7.129504 ACCCAGTCAGGATTTTTCTATAGGAAT 59.870 37.037 0.00 0.00 41.22 3.01
4350 4857 6.447084 ACCCAGTCAGGATTTTTCTATAGGAA 59.553 38.462 0.00 0.00 41.22 3.36
4367 4874 3.855255 TTGTTTCAGATGACCCAGTCA 57.145 42.857 0.00 0.00 46.90 3.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.