Multiple sequence alignment - TraesCS4A01G090400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G090400 chr4A 100.000 2989 0 0 1 2989 96885211 96888199 0.000000e+00 5520.0
1 TraesCS4A01G090400 chr4A 88.416 1174 116 16 1 1162 491979950 491981115 0.000000e+00 1397.0
2 TraesCS4A01G090400 chr4A 89.591 269 27 1 1459 1726 422189399 422189131 1.030000e-89 340.0
3 TraesCS4A01G090400 chr4A 90.110 91 6 2 2409 2499 303782191 303782104 6.770000e-22 115.0
4 TraesCS4A01G090400 chr4A 94.545 55 3 0 1883 1937 91716300 91716354 5.310000e-13 86.1
5 TraesCS4A01G090400 chr4A 92.727 55 4 0 1883 1937 91724220 91724274 2.470000e-11 80.5
6 TraesCS4A01G090400 chr6A 87.073 1346 151 18 1 1330 221616795 221618133 0.000000e+00 1500.0
7 TraesCS4A01G090400 chr6A 89.703 505 36 5 2496 2988 416535787 416536287 5.440000e-177 630.0
8 TraesCS4A01G090400 chr6A 89.484 504 38 7 2496 2988 416441355 416441854 9.100000e-175 623.0
9 TraesCS4A01G090400 chr6A 89.206 491 37 5 2511 2988 416474308 416474795 1.530000e-167 599.0
10 TraesCS4A01G090400 chr6A 91.765 340 24 3 2008 2343 411632667 411633006 1.250000e-128 470.0
11 TraesCS4A01G090400 chr6A 93.355 301 17 1 2009 2306 411635886 411636186 2.730000e-120 442.0
12 TraesCS4A01G090400 chr6A 92.384 302 19 2 2008 2305 51210132 51210433 7.660000e-116 427.0
13 TraesCS4A01G090400 chr6A 89.668 271 26 2 1458 1726 317624666 317624396 7.930000e-91 344.0
14 TraesCS4A01G090400 chr6A 94.545 55 3 0 1883 1937 564324514 564324568 5.310000e-13 86.1
15 TraesCS4A01G090400 chr6A 95.918 49 2 0 1889 1937 306130274 306130226 2.470000e-11 80.5
16 TraesCS4A01G090400 chr6A 90.909 55 5 0 1883 1937 564316585 564316639 1.150000e-09 75.0
17 TraesCS4A01G090400 chr7A 86.914 1345 150 24 1 1329 197275217 197273883 0.000000e+00 1485.0
18 TraesCS4A01G090400 chr7A 87.215 1314 145 21 1 1299 338697619 338698924 0.000000e+00 1474.0
19 TraesCS4A01G090400 chr7A 86.411 1354 160 21 1 1337 444380921 444379575 0.000000e+00 1459.0
20 TraesCS4A01G090400 chr7A 82.759 638 86 21 708 1331 262907857 262908484 5.630000e-152 547.0
21 TraesCS4A01G090400 chr7A 90.698 258 24 0 1458 1715 195293860 195294117 7.930000e-91 344.0
22 TraesCS4A01G090400 chr7A 85.079 315 40 7 1458 1769 281879221 281878911 6.220000e-82 315.0
23 TraesCS4A01G090400 chr7A 92.701 137 6 3 2368 2502 480776505 480776371 8.450000e-46 195.0
24 TraesCS4A01G090400 chr7A 92.481 133 7 2 2368 2498 480784592 480784461 1.410000e-43 187.0
25 TraesCS4A01G090400 chr1D 88.775 1167 112 17 1 1157 195588691 195589848 0.000000e+00 1411.0
26 TraesCS4A01G090400 chr1A 85.610 1369 154 33 1 1352 424704149 424705491 0.000000e+00 1397.0
27 TraesCS4A01G090400 chr1A 84.874 1309 160 31 1 1287 247875817 247874525 0.000000e+00 1286.0
28 TraesCS4A01G090400 chr1A 89.630 270 27 1 1458 1726 538646771 538647040 2.850000e-90 342.0
29 TraesCS4A01G090400 chr1A 88.971 272 30 0 1455 1726 185407990 185408261 1.330000e-88 337.0
30 TraesCS4A01G090400 chr5D 88.033 1195 118 22 1 1179 405991815 405990630 0.000000e+00 1391.0
31 TraesCS4A01G090400 chr3A 85.393 1335 159 33 1 1316 396594313 396592996 0.000000e+00 1352.0
32 TraesCS4A01G090400 chr3A 90.040 502 42 5 2491 2988 189086658 189087155 0.000000e+00 643.0
33 TraesCS4A01G090400 chr3A 83.770 610 80 10 1365 1962 297526866 297527468 7.240000e-156 560.0
34 TraesCS4A01G090400 chr3A 83.633 611 79 12 1365 1962 297519298 297519900 3.370000e-154 555.0
35 TraesCS4A01G090400 chr3A 87.123 497 46 15 2497 2989 451689866 451689384 5.630000e-152 547.0
36 TraesCS4A01G090400 chr3A 90.265 339 29 2 2009 2343 270914810 270914472 9.830000e-120 440.0
37 TraesCS4A01G090400 chr3A 89.552 268 27 1 1460 1726 320243502 320243235 3.690000e-89 339.0
38 TraesCS4A01G090400 chr3A 89.259 270 28 1 1458 1726 320235515 320235246 1.330000e-88 337.0
39 TraesCS4A01G090400 chr3A 76.780 323 50 19 1017 1329 151357809 151357502 1.110000e-34 158.0
40 TraesCS4A01G090400 chr3A 90.110 91 6 2 2409 2499 71537680 71537767 6.770000e-22 115.0
41 TraesCS4A01G090400 chr3A 90.110 91 5 2 2409 2499 234014792 234014878 6.770000e-22 115.0
42 TraesCS4A01G090400 chr3A 89.011 91 6 2 2409 2499 234040288 234040374 3.150000e-20 110.0
43 TraesCS4A01G090400 chr7D 83.561 1247 157 35 107 1337 567412366 567413580 0.000000e+00 1123.0
44 TraesCS4A01G090400 chr2A 79.298 1710 253 66 3 1668 211093348 211095000 0.000000e+00 1103.0
45 TraesCS4A01G090400 chr2A 87.112 838 69 16 1576 2406 263574436 263575241 0.000000e+00 913.0
46 TraesCS4A01G090400 chr2A 89.980 499 40 4 2496 2988 680598629 680599123 1.170000e-178 636.0
47 TraesCS4A01G090400 chr2A 88.545 323 27 3 1945 2263 387965723 387965407 1.680000e-102 383.0
48 TraesCS4A01G090400 chr2A 90.226 266 25 1 1461 1726 451753966 451753702 2.210000e-91 346.0
49 TraesCS4A01G090400 chr2A 89.831 177 17 1 2088 2263 425778871 425779047 3.000000e-55 226.0
50 TraesCS4A01G090400 chr2A 87.719 171 13 4 2491 2656 216062069 216062236 3.040000e-45 193.0
51 TraesCS4A01G090400 chr2A 87.135 171 14 4 2491 2656 216070221 216070388 1.410000e-43 187.0
52 TraesCS4A01G090400 chr2A 85.143 175 19 3 2491 2659 587532992 587533165 3.960000e-39 172.0
53 TraesCS4A01G090400 chr2A 91.304 69 6 0 1334 1402 288061844 288061776 8.820000e-16 95.3
54 TraesCS4A01G090400 chr2A 91.304 69 6 0 1334 1402 320313076 320313144 8.820000e-16 95.3
55 TraesCS4A01G090400 chr2A 97.143 35 1 0 2296 2330 300947694 300947728 3.220000e-05 60.2
56 TraesCS4A01G090400 chr5A 90.805 522 41 4 1568 2085 224060713 224060195 0.000000e+00 691.0
57 TraesCS4A01G090400 chr5A 87.771 507 50 5 2490 2988 97773622 97773120 1.540000e-162 582.0
58 TraesCS4A01G090400 chr5A 88.854 323 25 4 1945 2263 481533359 481533674 1.300000e-103 387.0
59 TraesCS4A01G090400 chr5A 88.050 318 28 3 1950 2263 481594731 481595042 4.710000e-98 368.0
60 TraesCS4A01G090400 chr5A 84.762 105 12 4 2415 2515 362023512 362023408 5.270000e-18 102.0
61 TraesCS4A01G090400 chr4D 89.818 275 25 3 2716 2988 134308396 134308123 1.700000e-92 350.0
62 TraesCS4A01G090400 chr4D 86.885 122 12 3 1325 1444 199648458 199648577 1.870000e-27 134.0
63 TraesCS4A01G090400 chr3D 89.091 275 26 4 2716 2988 461829019 461829291 3.690000e-89 339.0
64 TraesCS4A01G090400 chr3D 88.889 54 6 0 2295 2348 254200110 254200057 1.920000e-07 67.6
65 TraesCS4A01G090400 chr3B 81.752 137 13 12 2385 2515 376875760 376875890 1.470000e-18 104.0
66 TraesCS4A01G090400 chr3B 88.060 67 6 2 2374 2440 663637239 663637175 8.880000e-11 78.7
67 TraesCS4A01G090400 chr3B 88.060 67 6 2 2374 2440 663645539 663645475 8.880000e-11 78.7
68 TraesCS4A01G090400 chr3B 87.324 71 4 4 2369 2435 313336507 313336438 3.190000e-10 76.8
69 TraesCS4A01G090400 chr5B 83.810 105 13 4 2415 2515 461876564 461876460 2.450000e-16 97.1
70 TraesCS4A01G090400 chr4B 97.826 46 1 0 2302 2347 311421064 311421019 2.470000e-11 80.5
71 TraesCS4A01G090400 chr4B 92.683 41 1 2 2323 2361 264422000 264422040 1.160000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G090400 chr4A 96885211 96888199 2988 False 5520 5520 100.000 1 2989 1 chr4A.!!$F3 2988
1 TraesCS4A01G090400 chr4A 491979950 491981115 1165 False 1397 1397 88.416 1 1162 1 chr4A.!!$F4 1161
2 TraesCS4A01G090400 chr6A 221616795 221618133 1338 False 1500 1500 87.073 1 1330 1 chr6A.!!$F2 1329
3 TraesCS4A01G090400 chr6A 416535787 416536287 500 False 630 630 89.703 2496 2988 1 chr6A.!!$F5 492
4 TraesCS4A01G090400 chr6A 411632667 411636186 3519 False 456 470 92.560 2008 2343 2 chr6A.!!$F8 335
5 TraesCS4A01G090400 chr7A 197273883 197275217 1334 True 1485 1485 86.914 1 1329 1 chr7A.!!$R1 1328
6 TraesCS4A01G090400 chr7A 338697619 338698924 1305 False 1474 1474 87.215 1 1299 1 chr7A.!!$F3 1298
7 TraesCS4A01G090400 chr7A 444379575 444380921 1346 True 1459 1459 86.411 1 1337 1 chr7A.!!$R3 1336
8 TraesCS4A01G090400 chr7A 262907857 262908484 627 False 547 547 82.759 708 1331 1 chr7A.!!$F2 623
9 TraesCS4A01G090400 chr1D 195588691 195589848 1157 False 1411 1411 88.775 1 1157 1 chr1D.!!$F1 1156
10 TraesCS4A01G090400 chr1A 424704149 424705491 1342 False 1397 1397 85.610 1 1352 1 chr1A.!!$F2 1351
11 TraesCS4A01G090400 chr1A 247874525 247875817 1292 True 1286 1286 84.874 1 1287 1 chr1A.!!$R1 1286
12 TraesCS4A01G090400 chr5D 405990630 405991815 1185 True 1391 1391 88.033 1 1179 1 chr5D.!!$R1 1178
13 TraesCS4A01G090400 chr3A 396592996 396594313 1317 True 1352 1352 85.393 1 1316 1 chr3A.!!$R5 1315
14 TraesCS4A01G090400 chr3A 297526866 297527468 602 False 560 560 83.770 1365 1962 1 chr3A.!!$F6 597
15 TraesCS4A01G090400 chr3A 297519298 297519900 602 False 555 555 83.633 1365 1962 1 chr3A.!!$F5 597
16 TraesCS4A01G090400 chr7D 567412366 567413580 1214 False 1123 1123 83.561 107 1337 1 chr7D.!!$F1 1230
17 TraesCS4A01G090400 chr2A 211093348 211095000 1652 False 1103 1103 79.298 3 1668 1 chr2A.!!$F1 1665
18 TraesCS4A01G090400 chr2A 263574436 263575241 805 False 913 913 87.112 1576 2406 1 chr2A.!!$F4 830
19 TraesCS4A01G090400 chr5A 224060195 224060713 518 True 691 691 90.805 1568 2085 1 chr5A.!!$R2 517
20 TraesCS4A01G090400 chr5A 97773120 97773622 502 True 582 582 87.771 2490 2988 1 chr5A.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 279 0.037790 GCTATAAGAGGGGCTGAGCG 60.038 60.0 0.0 0.0 0.0 5.03 F
1265 1284 0.105964 ATGCATACGGTACATGGCGT 59.894 50.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 1379 0.097499 TGTATGACTACCGTCGCGTG 59.903 55.0 5.77 0.0 43.21 5.34 R
2257 6263 0.107831 TGCCGTCCAAGTTACTGCTT 59.892 50.0 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 5.957976 CGTAAGAAACGCAAAATCAAGAG 57.042 39.130 0.00 0.00 46.10 2.85
97 100 2.417651 CGGTATGACGGAAACTAAGGCA 60.418 50.000 0.00 0.00 0.00 4.75
129 132 2.957474 ACAAAACACCAGGCATAAGGT 58.043 42.857 0.00 0.00 39.10 3.50
231 241 5.399933 TCCAATATGGAACAACCTTCAGCG 61.400 45.833 0.00 0.00 45.00 5.18
269 279 0.037790 GCTATAAGAGGGGCTGAGCG 60.038 60.000 0.00 0.00 0.00 5.03
298 308 3.636282 AACATAGCCAAACAACGGTTC 57.364 42.857 0.00 0.00 35.82 3.62
354 366 6.449698 CAATATGGGAGGCATGATAAACAAC 58.550 40.000 0.00 0.00 0.00 3.32
358 370 2.099756 GGAGGCATGATAAACAACTGGC 59.900 50.000 0.00 0.00 35.30 4.85
473 485 4.501743 GGAAGAAGAACGAGTCCAAGAAGT 60.502 45.833 0.00 0.00 0.00 3.01
640 653 5.043248 GTCTGGTTTAAATATGCATGGCAC 58.957 41.667 10.16 0.00 43.04 5.01
667 680 6.524490 CAAAGTGCACAAACAAAACTACAAG 58.476 36.000 21.04 0.00 0.00 3.16
686 699 7.982354 ACTACAAGTTAAGTGGAGCTCAATATC 59.018 37.037 17.19 0.00 29.08 1.63
694 707 3.031013 TGGAGCTCAATATCCAACGAGA 58.969 45.455 17.19 0.00 42.61 4.04
706 719 4.135747 TCCAACGAGATGCATATTGACA 57.864 40.909 15.51 0.00 0.00 3.58
720 733 5.925397 GCATATTGACAAAACACCACATTCA 59.075 36.000 0.00 0.00 0.00 2.57
730 743 8.987890 ACAAAACACCACATTCAATTATTTAGC 58.012 29.630 0.00 0.00 0.00 3.09
737 750 7.500559 ACCACATTCAATTATTTAGCTCTCTCC 59.499 37.037 0.00 0.00 0.00 3.71
744 757 8.262227 TCAATTATTTAGCTCTCTCCCGTTTAA 58.738 33.333 0.00 0.00 0.00 1.52
745 758 9.057089 CAATTATTTAGCTCTCTCCCGTTTAAT 57.943 33.333 0.00 0.00 0.00 1.40
746 759 8.834749 ATTATTTAGCTCTCTCCCGTTTAATC 57.165 34.615 0.00 0.00 0.00 1.75
750 763 4.538738 AGCTCTCTCCCGTTTAATCTACT 58.461 43.478 0.00 0.00 0.00 2.57
757 770 6.761312 TCTCCCGTTTAATCTACTCAACAAA 58.239 36.000 0.00 0.00 0.00 2.83
786 799 4.141287 TGTTGGTTAACATGACAAGAGGG 58.859 43.478 8.10 0.00 41.66 4.30
788 801 2.983192 TGGTTAACATGACAAGAGGGGA 59.017 45.455 8.10 0.00 0.00 4.81
789 802 3.396276 TGGTTAACATGACAAGAGGGGAA 59.604 43.478 8.10 0.00 0.00 3.97
790 803 4.010349 GGTTAACATGACAAGAGGGGAAG 58.990 47.826 8.10 0.00 0.00 3.46
793 806 1.271597 ACATGACAAGAGGGGAAGCAC 60.272 52.381 0.00 0.00 0.00 4.40
796 809 1.425066 TGACAAGAGGGGAAGCACAAT 59.575 47.619 0.00 0.00 0.00 2.71
803 816 4.082125 AGAGGGGAAGCACAATTAAACTG 58.918 43.478 0.00 0.00 0.00 3.16
807 820 3.005791 GGGAAGCACAATTAAACTGCACT 59.994 43.478 5.48 0.00 33.06 4.40
808 821 4.217550 GGGAAGCACAATTAAACTGCACTA 59.782 41.667 5.48 0.00 33.06 2.74
814 827 7.978982 AGCACAATTAAACTGCACTATCTAAG 58.021 34.615 5.48 0.00 33.06 2.18
815 828 7.066284 AGCACAATTAAACTGCACTATCTAAGG 59.934 37.037 5.48 0.00 33.06 2.69
832 845 2.838637 AGGAATTTAAATGGGGCCGA 57.161 45.000 0.39 0.00 0.00 5.54
838 851 4.625607 ATTTAAATGGGGCCGAAAACAA 57.374 36.364 0.00 0.00 0.00 2.83
846 859 2.556257 GGGCCGAAAACAACAAACAAT 58.444 42.857 0.00 0.00 0.00 2.71
850 863 5.107259 GGGCCGAAAACAACAAACAATAATC 60.107 40.000 0.00 0.00 0.00 1.75
854 867 6.145371 CCGAAAACAACAAACAATAATCCTGG 59.855 38.462 0.00 0.00 0.00 4.45
862 875 7.418337 ACAAACAATAATCCTGGTAAATCCC 57.582 36.000 0.00 0.00 34.77 3.85
872 885 3.436325 CCTGGTAAATCCCCATGTGCATA 60.436 47.826 0.00 0.00 34.77 3.14
903 916 9.676195 AATTTAATGCAAACAACATTTTTAGCC 57.324 25.926 0.00 0.00 38.62 3.93
904 917 7.792374 TTAATGCAAACAACATTTTTAGCCA 57.208 28.000 0.00 0.00 38.62 4.75
927 940 9.316730 GCCATTTAAATGTTGTTATCATGATGT 57.683 29.630 23.24 0.00 34.60 3.06
940 953 7.120138 TGTTATCATGATGTGGATGACATATGC 59.880 37.037 18.72 0.00 45.90 3.14
941 954 3.998341 TCATGATGTGGATGACATATGCG 59.002 43.478 1.58 0.00 45.90 4.73
964 977 9.149225 TGCGAGTTTATGCAATTTTATGAAAAT 57.851 25.926 0.00 0.00 42.62 1.82
985 998 9.188588 GAAAATGTTGACATGAGCATATTATGG 57.811 33.333 0.00 0.00 36.56 2.74
991 1004 5.878669 TGACATGAGCATATTATGGAGCATC 59.121 40.000 0.00 0.00 0.00 3.91
993 1006 5.880887 ACATGAGCATATTATGGAGCATCTG 59.119 40.000 0.00 0.00 33.73 2.90
998 1011 4.394300 GCATATTATGGAGCATCTGGTCAC 59.606 45.833 11.14 2.24 43.82 3.67
1000 1013 1.878211 TATGGAGCATCTGGTCACCA 58.122 50.000 11.14 0.00 43.82 4.17
1009 1022 2.033448 TGGTCACCATGGCGGAAC 59.967 61.111 13.04 13.47 38.63 3.62
1023 1038 2.670148 GGAACGAGAGGGGTGCCAT 61.670 63.158 0.00 0.00 32.91 4.40
1024 1039 1.335132 GGAACGAGAGGGGTGCCATA 61.335 60.000 0.00 0.00 32.91 2.74
1026 1041 1.972660 AACGAGAGGGGTGCCATAGC 61.973 60.000 0.00 0.00 40.48 2.97
1036 1051 1.299850 TGCCATAGCGACGAATCCG 60.300 57.895 0.00 0.00 44.31 4.18
1049 1064 2.752354 ACGAATCCGAAAATGATGCCAA 59.248 40.909 0.00 0.00 39.50 4.52
1051 1066 3.709987 GAATCCGAAAATGATGCCAAGG 58.290 45.455 0.00 0.00 0.00 3.61
1074 1090 2.033801 ACATATCGGTTCCGGTAACTCG 59.966 50.000 8.30 10.47 38.23 4.18
1075 1091 2.036958 TATCGGTTCCGGTAACTCGA 57.963 50.000 20.54 20.54 41.62 4.04
1076 1092 1.396653 ATCGGTTCCGGTAACTCGAT 58.603 50.000 22.01 22.01 42.00 3.59
1077 1093 1.176527 TCGGTTCCGGTAACTCGATT 58.823 50.000 11.37 0.00 36.50 3.34
1078 1094 1.135315 TCGGTTCCGGTAACTCGATTG 60.135 52.381 11.37 0.00 36.50 2.67
1083 1099 3.710326 TCCGGTAACTCGATTGAGATG 57.290 47.619 17.27 1.57 45.57 2.90
1102 1121 1.358759 CCGGTGCAAAAGGTGTGAC 59.641 57.895 0.00 0.00 0.00 3.67
1103 1122 1.380403 CCGGTGCAAAAGGTGTGACA 61.380 55.000 0.00 0.00 0.00 3.58
1109 1128 1.679139 CAAAAGGTGTGACAGGAGCA 58.321 50.000 0.00 0.00 0.00 4.26
1111 1130 1.901591 AAAGGTGTGACAGGAGCATG 58.098 50.000 0.00 0.00 0.00 4.06
1156 1175 2.046988 GGTTACCGGGTTCCCACG 60.047 66.667 4.31 0.00 0.00 4.94
1162 1181 3.980989 CGGGTTCCCACGTGTCGA 61.981 66.667 15.65 6.64 0.00 4.20
1163 1182 2.660802 GGGTTCCCACGTGTCGAT 59.339 61.111 15.65 0.00 0.00 3.59
1164 1183 1.740296 GGGTTCCCACGTGTCGATG 60.740 63.158 15.65 0.00 0.00 3.84
1165 1184 1.740296 GGTTCCCACGTGTCGATGG 60.740 63.158 15.65 8.16 35.59 3.51
1166 1185 2.047655 TTCCCACGTGTCGATGGC 60.048 61.111 15.65 0.00 34.37 4.40
1167 1186 2.579657 TTCCCACGTGTCGATGGCT 61.580 57.895 15.65 0.00 34.37 4.75
1168 1187 2.501223 TTCCCACGTGTCGATGGCTC 62.501 60.000 15.65 0.00 34.37 4.70
1169 1188 2.880879 CCACGTGTCGATGGCTCG 60.881 66.667 15.65 0.00 46.41 5.03
1170 1189 2.880879 CACGTGTCGATGGCTCGG 60.881 66.667 7.58 0.00 45.10 4.63
1171 1190 3.060000 ACGTGTCGATGGCTCGGA 61.060 61.111 0.00 0.00 45.10 4.55
1172 1191 2.180769 CGTGTCGATGGCTCGGAA 59.819 61.111 0.00 0.00 45.10 4.30
1173 1192 1.445410 CGTGTCGATGGCTCGGAAA 60.445 57.895 0.00 0.00 45.10 3.13
1174 1193 1.683790 CGTGTCGATGGCTCGGAAAC 61.684 60.000 0.00 0.09 45.10 2.78
1186 1205 3.580916 GGAAACGGGTAATGCGCA 58.419 55.556 14.96 14.96 0.00 6.09
1187 1206 1.877367 GGAAACGGGTAATGCGCAA 59.123 52.632 17.11 0.00 0.00 4.85
1188 1207 0.241481 GGAAACGGGTAATGCGCAAA 59.759 50.000 17.11 2.00 0.00 3.68
1189 1208 1.135228 GGAAACGGGTAATGCGCAAAT 60.135 47.619 17.11 9.58 0.00 2.32
1190 1209 2.097791 GGAAACGGGTAATGCGCAAATA 59.902 45.455 17.11 8.37 0.00 1.40
1191 1210 3.427773 GGAAACGGGTAATGCGCAAATAA 60.428 43.478 17.11 0.00 0.00 1.40
1192 1211 4.356289 GAAACGGGTAATGCGCAAATAAT 58.644 39.130 17.11 0.00 0.00 1.28
1193 1212 5.502153 AAACGGGTAATGCGCAAATAATA 57.498 34.783 17.11 0.00 0.00 0.98
1194 1213 5.502153 AACGGGTAATGCGCAAATAATAA 57.498 34.783 17.11 0.00 0.00 1.40
1195 1214 5.502153 ACGGGTAATGCGCAAATAATAAA 57.498 34.783 17.11 0.00 0.00 1.40
1196 1215 5.892568 ACGGGTAATGCGCAAATAATAAAA 58.107 33.333 17.11 0.00 0.00 1.52
1197 1216 5.744819 ACGGGTAATGCGCAAATAATAAAAC 59.255 36.000 17.11 0.04 0.00 2.43
1198 1217 5.744345 CGGGTAATGCGCAAATAATAAAACA 59.256 36.000 17.11 0.00 0.00 2.83
1199 1218 6.419413 CGGGTAATGCGCAAATAATAAAACAT 59.581 34.615 17.11 0.00 0.00 2.71
1200 1219 7.563270 GGGTAATGCGCAAATAATAAAACATG 58.437 34.615 17.11 0.00 0.00 3.21
1201 1220 7.062848 GGTAATGCGCAAATAATAAAACATGC 58.937 34.615 17.11 0.00 0.00 4.06
1202 1221 6.659361 AATGCGCAAATAATAAAACATGCA 57.341 29.167 17.11 0.00 33.55 3.96
1203 1222 6.847956 ATGCGCAAATAATAAAACATGCAT 57.152 29.167 17.11 0.00 34.76 3.96
1204 1223 6.033895 TGCGCAAATAATAAAACATGCATG 57.966 33.333 25.09 25.09 33.55 4.06
1205 1224 5.809051 TGCGCAAATAATAAAACATGCATGA 59.191 32.000 32.75 11.13 33.55 3.07
1206 1225 6.122125 GCGCAAATAATAAAACATGCATGAC 58.878 36.000 32.75 4.90 33.55 3.06
1207 1226 6.237781 GCGCAAATAATAAAACATGCATGACA 60.238 34.615 32.75 14.15 33.55 3.58
1208 1227 7.673545 GCGCAAATAATAAAACATGCATGACAA 60.674 33.333 32.75 14.81 33.55 3.18
1209 1228 8.167345 CGCAAATAATAAAACATGCATGACAAA 58.833 29.630 32.75 15.16 33.55 2.83
1210 1229 9.264782 GCAAATAATAAAACATGCATGACAAAC 57.735 29.630 32.75 5.09 34.10 2.93
1214 1233 6.874297 ATAAAACATGCATGACAAACATCG 57.126 33.333 32.75 2.55 37.07 3.84
1215 1234 2.925578 ACATGCATGACAAACATCGG 57.074 45.000 32.75 1.99 37.07 4.18
1216 1235 2.435422 ACATGCATGACAAACATCGGA 58.565 42.857 32.75 0.00 37.07 4.55
1217 1236 3.018856 ACATGCATGACAAACATCGGAT 58.981 40.909 32.75 2.54 37.07 4.18
1218 1237 4.198530 ACATGCATGACAAACATCGGATA 58.801 39.130 32.75 0.00 37.07 2.59
1219 1238 4.035558 ACATGCATGACAAACATCGGATAC 59.964 41.667 32.75 0.00 37.07 2.24
1220 1239 3.604582 TGCATGACAAACATCGGATACA 58.395 40.909 0.00 0.00 37.07 2.29
1221 1240 4.198530 TGCATGACAAACATCGGATACAT 58.801 39.130 0.00 0.00 37.07 2.29
1222 1241 4.035441 TGCATGACAAACATCGGATACATG 59.965 41.667 0.00 0.00 37.07 3.21
1223 1242 4.530388 CATGACAAACATCGGATACATGC 58.470 43.478 0.00 0.00 37.07 4.06
1224 1243 3.604582 TGACAAACATCGGATACATGCA 58.395 40.909 0.00 0.00 0.00 3.96
1225 1244 4.006319 TGACAAACATCGGATACATGCAA 58.994 39.130 0.00 0.00 0.00 4.08
1226 1245 4.142708 TGACAAACATCGGATACATGCAAC 60.143 41.667 0.00 0.00 0.00 4.17
1227 1246 3.128589 ACAAACATCGGATACATGCAACC 59.871 43.478 0.00 0.00 0.00 3.77
1228 1247 2.708216 ACATCGGATACATGCAACCA 57.292 45.000 0.00 0.00 0.00 3.67
1229 1248 2.288666 ACATCGGATACATGCAACCAC 58.711 47.619 0.00 0.00 0.00 4.16
1230 1249 1.603802 CATCGGATACATGCAACCACC 59.396 52.381 0.00 0.00 0.00 4.61
1231 1250 0.908910 TCGGATACATGCAACCACCT 59.091 50.000 0.00 0.00 0.00 4.00
1232 1251 1.134521 TCGGATACATGCAACCACCTC 60.135 52.381 0.00 0.00 0.00 3.85
1233 1252 1.299541 GGATACATGCAACCACCTCG 58.700 55.000 0.00 0.00 0.00 4.63
1234 1253 1.406887 GGATACATGCAACCACCTCGT 60.407 52.381 0.00 0.00 0.00 4.18
1235 1254 2.159014 GGATACATGCAACCACCTCGTA 60.159 50.000 0.00 0.00 0.00 3.43
1236 1255 2.373540 TACATGCAACCACCTCGTAC 57.626 50.000 0.00 0.00 0.00 3.67
1237 1256 0.394938 ACATGCAACCACCTCGTACA 59.605 50.000 0.00 0.00 0.00 2.90
1238 1257 0.796312 CATGCAACCACCTCGTACAC 59.204 55.000 0.00 0.00 0.00 2.90
1239 1258 0.669318 ATGCAACCACCTCGTACACG 60.669 55.000 0.00 0.00 41.45 4.49
1240 1259 2.664436 GCAACCACCTCGTACACGC 61.664 63.158 0.00 0.00 39.60 5.34
1241 1260 1.300311 CAACCACCTCGTACACGCA 60.300 57.895 0.00 0.00 39.60 5.24
1242 1261 0.669318 CAACCACCTCGTACACGCAT 60.669 55.000 0.00 0.00 39.60 4.73
1243 1262 0.389426 AACCACCTCGTACACGCATC 60.389 55.000 0.00 0.00 39.60 3.91
1244 1263 1.214325 CCACCTCGTACACGCATCA 59.786 57.895 0.00 0.00 39.60 3.07
1245 1264 1.076533 CCACCTCGTACACGCATCAC 61.077 60.000 0.00 0.00 39.60 3.06
1246 1265 0.388006 CACCTCGTACACGCATCACA 60.388 55.000 0.00 0.00 39.60 3.58
1247 1266 0.530744 ACCTCGTACACGCATCACAT 59.469 50.000 0.00 0.00 39.60 3.21
1248 1267 0.923403 CCTCGTACACGCATCACATG 59.077 55.000 0.00 0.00 39.60 3.21
1261 1280 4.394099 CATCACATGCATACGGTACATG 57.606 45.455 13.98 13.98 0.00 3.21
1262 1281 2.832563 TCACATGCATACGGTACATGG 58.167 47.619 17.77 10.17 0.00 3.66
1263 1282 1.264020 CACATGCATACGGTACATGGC 59.736 52.381 17.77 8.92 0.00 4.40
1264 1283 0.512518 CATGCATACGGTACATGGCG 59.487 55.000 0.00 0.00 0.00 5.69
1265 1284 0.105964 ATGCATACGGTACATGGCGT 59.894 50.000 0.00 0.00 0.00 5.68
1266 1285 0.528901 TGCATACGGTACATGGCGTC 60.529 55.000 0.00 0.00 0.00 5.19
1267 1286 1.545614 GCATACGGTACATGGCGTCG 61.546 60.000 0.00 0.00 0.00 5.12
1268 1287 0.248743 CATACGGTACATGGCGTCGT 60.249 55.000 0.00 4.36 37.78 4.34
1269 1288 0.457035 ATACGGTACATGGCGTCGTT 59.543 50.000 9.99 0.00 35.60 3.85
1270 1289 0.179166 TACGGTACATGGCGTCGTTC 60.179 55.000 9.99 0.00 35.60 3.95
1271 1290 2.162754 CGGTACATGGCGTCGTTCC 61.163 63.158 0.00 0.00 0.00 3.62
1272 1291 2.162754 GGTACATGGCGTCGTTCCG 61.163 63.158 0.00 0.00 0.00 4.30
1273 1292 2.162754 GTACATGGCGTCGTTCCGG 61.163 63.158 0.00 0.00 0.00 5.14
1274 1293 2.638354 TACATGGCGTCGTTCCGGT 61.638 57.895 0.00 0.00 0.00 5.28
1275 1294 2.822418 TACATGGCGTCGTTCCGGTG 62.822 60.000 0.00 0.00 0.00 4.94
1276 1295 4.752879 ATGGCGTCGTTCCGGTGG 62.753 66.667 0.00 0.00 0.00 4.61
1278 1297 4.974989 GGCGTCGTTCCGGTGGTT 62.975 66.667 0.00 0.00 0.00 3.67
1279 1298 2.049248 GCGTCGTTCCGGTGGTTA 60.049 61.111 0.00 0.00 0.00 2.85
1280 1299 1.446618 GCGTCGTTCCGGTGGTTAT 60.447 57.895 0.00 0.00 0.00 1.89
1281 1300 0.179140 GCGTCGTTCCGGTGGTTATA 60.179 55.000 0.00 0.00 0.00 0.98
1282 1301 1.548986 CGTCGTTCCGGTGGTTATAC 58.451 55.000 0.00 0.00 0.00 1.47
1283 1302 1.798813 CGTCGTTCCGGTGGTTATACC 60.799 57.143 0.00 0.00 39.22 2.73
1284 1303 1.478105 GTCGTTCCGGTGGTTATACCT 59.522 52.381 0.00 0.00 39.58 3.08
1285 1304 2.094026 GTCGTTCCGGTGGTTATACCTT 60.094 50.000 0.00 0.00 39.58 3.50
1286 1305 2.166254 TCGTTCCGGTGGTTATACCTTC 59.834 50.000 0.00 0.00 39.58 3.46
1287 1306 2.543641 GTTCCGGTGGTTATACCTTCG 58.456 52.381 0.00 0.00 39.58 3.79
1288 1307 2.142356 TCCGGTGGTTATACCTTCGA 57.858 50.000 0.00 0.00 39.58 3.71
1289 1308 2.455557 TCCGGTGGTTATACCTTCGAA 58.544 47.619 0.00 0.00 39.58 3.71
1290 1309 3.033184 TCCGGTGGTTATACCTTCGAAT 58.967 45.455 0.00 0.00 39.58 3.34
1291 1310 3.068590 TCCGGTGGTTATACCTTCGAATC 59.931 47.826 0.00 0.00 39.58 2.52
1292 1311 3.181473 CCGGTGGTTATACCTTCGAATCA 60.181 47.826 0.00 0.00 39.58 2.57
1293 1312 4.502604 CCGGTGGTTATACCTTCGAATCAT 60.503 45.833 0.00 0.00 39.58 2.45
1294 1313 4.447724 CGGTGGTTATACCTTCGAATCATG 59.552 45.833 0.00 0.00 39.58 3.07
1295 1314 4.213482 GGTGGTTATACCTTCGAATCATGC 59.787 45.833 0.00 0.00 39.58 4.06
1296 1315 4.055360 TGGTTATACCTTCGAATCATGCG 58.945 43.478 0.00 0.00 39.58 4.73
1297 1316 4.056050 GGTTATACCTTCGAATCATGCGT 58.944 43.478 0.00 0.00 34.73 5.24
1298 1317 4.510340 GGTTATACCTTCGAATCATGCGTT 59.490 41.667 0.00 0.00 34.73 4.84
1299 1318 5.333111 GGTTATACCTTCGAATCATGCGTTC 60.333 44.000 0.00 0.00 34.73 3.95
1300 1319 8.444341 GGTTATACCTTCGAATCATGCGTTCG 62.444 46.154 20.24 20.24 41.31 3.95
1301 1320 0.301687 CCTTCGAATCATGCGTTCGG 59.698 55.000 23.55 13.72 46.14 4.30
1302 1321 0.301687 CTTCGAATCATGCGTTCGGG 59.698 55.000 23.55 16.34 46.14 5.14
1303 1322 0.108567 TTCGAATCATGCGTTCGGGA 60.109 50.000 23.55 14.69 46.14 5.14
1304 1323 0.804544 TCGAATCATGCGTTCGGGAC 60.805 55.000 23.55 0.00 46.14 4.46
1324 1343 2.135664 GGTACGAGTTCGATGGGATG 57.864 55.000 8.72 0.00 43.02 3.51
1325 1344 1.407979 GGTACGAGTTCGATGGGATGT 59.592 52.381 8.72 0.00 43.02 3.06
1326 1345 2.620115 GGTACGAGTTCGATGGGATGTA 59.380 50.000 8.72 0.00 43.02 2.29
1327 1346 3.304525 GGTACGAGTTCGATGGGATGTAG 60.305 52.174 8.72 0.00 43.02 2.74
1328 1347 2.376109 ACGAGTTCGATGGGATGTAGT 58.624 47.619 8.72 0.00 43.02 2.73
1329 1348 2.758979 ACGAGTTCGATGGGATGTAGTT 59.241 45.455 8.72 0.00 43.02 2.24
1330 1349 3.116300 CGAGTTCGATGGGATGTAGTTG 58.884 50.000 0.00 0.00 43.02 3.16
1331 1350 3.181490 CGAGTTCGATGGGATGTAGTTGA 60.181 47.826 0.00 0.00 43.02 3.18
1332 1351 4.676986 CGAGTTCGATGGGATGTAGTTGAA 60.677 45.833 0.00 0.00 43.02 2.69
1333 1352 4.759782 AGTTCGATGGGATGTAGTTGAAG 58.240 43.478 0.00 0.00 0.00 3.02
1334 1353 4.223032 AGTTCGATGGGATGTAGTTGAAGT 59.777 41.667 0.00 0.00 0.00 3.01
1335 1354 5.421056 AGTTCGATGGGATGTAGTTGAAGTA 59.579 40.000 0.00 0.00 0.00 2.24
1336 1355 5.515797 TCGATGGGATGTAGTTGAAGTAG 57.484 43.478 0.00 0.00 0.00 2.57
1337 1356 4.954202 TCGATGGGATGTAGTTGAAGTAGT 59.046 41.667 0.00 0.00 0.00 2.73
1338 1357 5.043903 CGATGGGATGTAGTTGAAGTAGTG 58.956 45.833 0.00 0.00 0.00 2.74
1339 1358 4.819105 TGGGATGTAGTTGAAGTAGTGG 57.181 45.455 0.00 0.00 0.00 4.00
1340 1359 4.164981 TGGGATGTAGTTGAAGTAGTGGT 58.835 43.478 0.00 0.00 0.00 4.16
1341 1360 5.335261 TGGGATGTAGTTGAAGTAGTGGTA 58.665 41.667 0.00 0.00 0.00 3.25
1342 1361 5.186409 TGGGATGTAGTTGAAGTAGTGGTAC 59.814 44.000 0.00 0.00 0.00 3.34
1343 1362 5.186409 GGGATGTAGTTGAAGTAGTGGTACA 59.814 44.000 0.00 0.00 0.00 2.90
1355 1374 1.661480 TGGTACACGGGTCTTGTCG 59.339 57.895 0.00 0.00 0.00 4.35
1356 1375 1.080298 GGTACACGGGTCTTGTCGG 60.080 63.158 0.00 0.00 0.00 4.79
1357 1376 1.526575 GGTACACGGGTCTTGTCGGA 61.527 60.000 0.00 0.00 0.00 4.55
1358 1377 0.529378 GTACACGGGTCTTGTCGGAT 59.471 55.000 0.00 0.00 0.00 4.18
1359 1378 0.813184 TACACGGGTCTTGTCGGATC 59.187 55.000 0.00 0.00 0.00 3.36
1360 1379 1.153628 CACGGGTCTTGTCGGATCC 60.154 63.158 0.00 0.00 33.38 3.36
1361 1380 1.608336 ACGGGTCTTGTCGGATCCA 60.608 57.895 13.41 0.00 36.33 3.41
1362 1381 1.153628 CGGGTCTTGTCGGATCCAC 60.154 63.158 13.41 9.77 36.33 4.02
1363 1382 1.153628 GGGTCTTGTCGGATCCACG 60.154 63.158 13.41 0.00 36.55 4.94
1374 1393 1.298190 GATCCACGCGACGGTAGTC 60.298 63.158 15.93 9.33 43.72 2.59
1391 1410 5.503031 CGGTAGTCATACACGTTTCGTAGAT 60.503 44.000 0.00 0.00 38.32 1.98
1398 1417 1.058695 CACGTTTCGTAGATGTTCGGC 59.941 52.381 0.00 0.00 38.32 5.54
1416 1435 2.030958 CCCGTCGTTGTACTTGGGC 61.031 63.158 0.00 0.00 0.00 5.36
1482 1512 1.217882 GTCACCACTGAACTTGACGG 58.782 55.000 0.00 0.00 29.79 4.79
1523 1553 4.766088 GCGTCGGCGGTAGTCGTT 62.766 66.667 13.05 0.00 46.96 3.85
1525 1555 2.575262 GTCGGCGGTAGTCGTTCG 60.575 66.667 7.21 0.00 46.96 3.95
1526 1556 3.803082 TCGGCGGTAGTCGTTCGG 61.803 66.667 7.21 0.00 46.96 4.30
1530 1560 4.842091 CGGTAGTCGTTCGGGCGG 62.842 72.222 0.29 0.00 0.00 6.13
1546 1576 2.879462 GGCGAGCGTCGTCGAAAT 60.879 61.111 17.38 0.00 42.85 2.17
1547 1577 2.442188 GGCGAGCGTCGTCGAAATT 61.442 57.895 17.38 0.00 42.85 1.82
1548 1578 1.295220 GCGAGCGTCGTCGAAATTG 60.295 57.895 17.38 0.00 42.85 2.32
1550 1580 1.058903 GAGCGTCGTCGAAATTGGC 59.941 57.895 6.17 0.00 39.71 4.52
1551 1581 2.275812 GCGTCGTCGAAATTGGCG 60.276 61.111 6.17 0.00 39.71 5.69
1553 1583 2.782615 GTCGTCGAAATTGGCGGG 59.217 61.111 0.00 0.00 0.00 6.13
1554 1584 3.122323 TCGTCGAAATTGGCGGGC 61.122 61.111 0.00 0.00 0.00 6.13
1555 1585 4.514569 CGTCGAAATTGGCGGGCG 62.515 66.667 0.00 3.76 0.00 6.13
1556 1586 3.428282 GTCGAAATTGGCGGGCGT 61.428 61.111 0.00 0.00 0.00 5.68
1557 1587 3.122323 TCGAAATTGGCGGGCGTC 61.122 61.111 0.00 0.00 0.00 5.19
1558 1588 4.514569 CGAAATTGGCGGGCGTCG 62.515 66.667 0.00 0.00 42.76 5.12
1559 1589 3.428282 GAAATTGGCGGGCGTCGT 61.428 61.111 0.00 0.00 41.72 4.34
1570 1600 1.226128 GGCGTCGTGTAGTCGTACC 60.226 63.158 0.00 0.00 34.03 3.34
1604 1634 3.668191 GTCGTTCACGTTCGTATTGGTAA 59.332 43.478 0.00 0.00 40.80 2.85
1662 1692 1.579429 GGGGCAGCAAAACGTAGTG 59.421 57.895 0.00 0.00 45.00 2.74
1684 1714 3.074412 GACCTTGATGATGTTTCGGTGT 58.926 45.455 0.00 0.00 0.00 4.16
1719 1749 2.693074 CCAAAACAAGGTAGCACAAGGT 59.307 45.455 0.00 0.00 0.00 3.50
1860 1890 3.512516 GTGGCTTGGCGGCTGATC 61.513 66.667 11.43 0.00 39.32 2.92
1918 1951 2.022129 CCTCTGCGACGAACACCAC 61.022 63.158 0.00 0.00 0.00 4.16
1990 2023 4.980805 GCAACGGCGAGGGTGACA 62.981 66.667 16.62 0.00 0.00 3.58
1997 2030 2.425592 CGAGGGTGACACAAGGCA 59.574 61.111 8.08 0.00 0.00 4.75
2002 2035 1.526917 GGTGACACAAGGCAGCTGT 60.527 57.895 16.64 0.00 0.00 4.40
2022 2055 2.741985 CACGGAGCATGGACGCAA 60.742 61.111 0.00 0.00 0.00 4.85
2029 2062 0.745845 AGCATGGACGCAATGAGGAC 60.746 55.000 0.00 0.00 0.00 3.85
2037 2070 1.817099 GCAATGAGGACGAGGGCTG 60.817 63.158 0.00 0.00 0.00 4.85
2041 2074 3.071206 GAGGACGAGGGCTGCTGA 61.071 66.667 0.00 0.00 0.00 4.26
2124 6129 4.077184 GGTGGTCGGCCGATGACA 62.077 66.667 33.58 26.29 38.10 3.58
2268 6274 3.233355 CGGAGCCAAGCAGTAACTT 57.767 52.632 0.00 0.00 0.00 2.66
2269 6275 0.798776 CGGAGCCAAGCAGTAACTTG 59.201 55.000 0.00 0.00 45.42 3.16
2275 6281 0.517316 CAAGCAGTAACTTGGACGGC 59.483 55.000 0.00 0.00 42.73 5.68
2276 6282 0.107831 AAGCAGTAACTTGGACGGCA 59.892 50.000 0.00 0.00 40.03 5.69
2277 6283 0.107831 AGCAGTAACTTGGACGGCAA 59.892 50.000 0.00 0.00 40.03 4.52
2278 6284 0.517316 GCAGTAACTTGGACGGCAAG 59.483 55.000 0.00 0.00 37.84 4.01
2279 6285 1.156736 CAGTAACTTGGACGGCAAGG 58.843 55.000 0.00 0.00 34.20 3.61
2280 6286 0.605589 AGTAACTTGGACGGCAAGGC 60.606 55.000 0.00 0.00 34.20 4.35
2330 6341 3.239627 AAGCAGAGGACGGGGAGGA 62.240 63.158 0.00 0.00 0.00 3.71
2372 6383 3.025599 AGGTGCTGGCATGGGGAT 61.026 61.111 0.00 0.00 0.00 3.85
2392 6403 1.305297 TCCTCTCCCTGTGCGATGT 60.305 57.895 0.00 0.00 0.00 3.06
2394 6405 1.593787 CTCTCCCTGTGCGATGTGT 59.406 57.895 0.00 0.00 0.00 3.72
2397 6411 3.434319 CCCTGTGCGATGTGTGGC 61.434 66.667 0.00 0.00 0.00 5.01
2415 6429 4.247380 GGCGGCAGGAGGATGGAG 62.247 72.222 3.07 0.00 0.00 3.86
2416 6430 4.247380 GCGGCAGGAGGATGGAGG 62.247 72.222 0.00 0.00 0.00 4.30
2417 6431 3.554342 CGGCAGGAGGATGGAGGG 61.554 72.222 0.00 0.00 0.00 4.30
2418 6432 3.174265 GGCAGGAGGATGGAGGGG 61.174 72.222 0.00 0.00 0.00 4.79
2419 6433 2.040464 GCAGGAGGATGGAGGGGA 60.040 66.667 0.00 0.00 0.00 4.81
2420 6434 1.463018 GCAGGAGGATGGAGGGGAT 60.463 63.158 0.00 0.00 0.00 3.85
2421 6435 1.487850 GCAGGAGGATGGAGGGGATC 61.488 65.000 0.00 0.00 0.00 3.36
2422 6436 1.157276 AGGAGGATGGAGGGGATCG 59.843 63.158 0.00 0.00 0.00 3.69
2423 6437 1.156330 GGAGGATGGAGGGGATCGA 59.844 63.158 0.00 0.00 0.00 3.59
2424 6438 0.902516 GGAGGATGGAGGGGATCGAG 60.903 65.000 0.00 0.00 0.00 4.04
2425 6439 0.902516 GAGGATGGAGGGGATCGAGG 60.903 65.000 0.00 0.00 0.00 4.63
2426 6440 1.156330 GGATGGAGGGGATCGAGGA 59.844 63.158 0.00 0.00 0.00 3.71
2427 6441 0.902516 GGATGGAGGGGATCGAGGAG 60.903 65.000 0.00 0.00 0.00 3.69
2428 6442 0.902516 GATGGAGGGGATCGAGGAGG 60.903 65.000 0.00 0.00 0.00 4.30
2429 6443 2.203714 GGAGGGGATCGAGGAGGG 60.204 72.222 0.00 0.00 0.00 4.30
2430 6444 2.780185 GGAGGGGATCGAGGAGGGA 61.780 68.421 0.00 0.00 0.00 4.20
2431 6445 1.233369 GAGGGGATCGAGGAGGGAA 59.767 63.158 0.00 0.00 0.00 3.97
2432 6446 0.830023 GAGGGGATCGAGGAGGGAAG 60.830 65.000 0.00 0.00 0.00 3.46
2433 6447 1.839296 GGGGATCGAGGAGGGAAGG 60.839 68.421 0.00 0.00 0.00 3.46
2434 6448 2.512355 GGGATCGAGGAGGGAAGGC 61.512 68.421 0.00 0.00 0.00 4.35
2435 6449 2.512355 GGATCGAGGAGGGAAGGCC 61.512 68.421 0.00 0.00 0.00 5.19
2436 6450 1.762460 GATCGAGGAGGGAAGGCCA 60.762 63.158 5.01 0.00 35.15 5.36
2437 6451 1.753368 GATCGAGGAGGGAAGGCCAG 61.753 65.000 5.01 0.00 35.15 4.85
2438 6452 4.168291 CGAGGAGGGAAGGCCAGC 62.168 72.222 5.01 0.00 35.15 4.85
2439 6453 3.011517 GAGGAGGGAAGGCCAGCA 61.012 66.667 5.01 0.00 35.15 4.41
2440 6454 2.532715 AGGAGGGAAGGCCAGCAA 60.533 61.111 5.01 0.00 35.15 3.91
2441 6455 2.044551 GGAGGGAAGGCCAGCAAG 60.045 66.667 5.01 0.00 35.15 4.01
2442 6456 2.753446 GAGGGAAGGCCAGCAAGC 60.753 66.667 5.01 0.00 35.15 4.01
2443 6457 3.574074 GAGGGAAGGCCAGCAAGCA 62.574 63.158 5.01 0.00 35.15 3.91
2444 6458 3.066814 GGGAAGGCCAGCAAGCAG 61.067 66.667 5.01 0.00 35.15 4.24
2445 6459 3.066814 GGAAGGCCAGCAAGCAGG 61.067 66.667 5.01 0.00 0.00 4.85
2446 6460 3.066814 GAAGGCCAGCAAGCAGGG 61.067 66.667 5.01 2.23 0.00 4.45
2447 6461 4.691359 AAGGCCAGCAAGCAGGGG 62.691 66.667 5.01 0.00 0.00 4.79
2463 6477 2.748018 GGGGGTAAGAGGAGATCGG 58.252 63.158 0.00 0.00 0.00 4.18
2464 6478 0.832559 GGGGGTAAGAGGAGATCGGG 60.833 65.000 0.00 0.00 0.00 5.14
2465 6479 1.473497 GGGGTAAGAGGAGATCGGGC 61.473 65.000 0.00 0.00 0.00 6.13
2466 6480 0.759436 GGGTAAGAGGAGATCGGGCA 60.759 60.000 0.00 0.00 0.00 5.36
2467 6481 0.676736 GGTAAGAGGAGATCGGGCAG 59.323 60.000 0.00 0.00 0.00 4.85
2468 6482 0.676736 GTAAGAGGAGATCGGGCAGG 59.323 60.000 0.00 0.00 0.00 4.85
2469 6483 1.115930 TAAGAGGAGATCGGGCAGGC 61.116 60.000 0.00 0.00 0.00 4.85
2470 6484 3.934962 GAGGAGATCGGGCAGGCC 61.935 72.222 1.81 1.81 0.00 5.19
2471 6485 4.488911 AGGAGATCGGGCAGGCCT 62.489 66.667 12.03 0.00 36.10 5.19
2472 6486 3.934962 GGAGATCGGGCAGGCCTC 61.935 72.222 12.03 2.51 36.10 4.70
2473 6487 2.841988 GAGATCGGGCAGGCCTCT 60.842 66.667 12.03 8.03 36.10 3.69
2474 6488 2.366167 AGATCGGGCAGGCCTCTT 60.366 61.111 12.03 0.00 36.10 2.85
2475 6489 2.203126 GATCGGGCAGGCCTCTTG 60.203 66.667 12.03 0.00 36.10 3.02
2476 6490 3.764160 GATCGGGCAGGCCTCTTGG 62.764 68.421 12.03 0.00 36.10 3.61
2486 6500 3.221222 CCTCTTGGGCCGACTAGG 58.779 66.667 0.00 0.58 44.97 3.02
2487 6501 1.686110 CCTCTTGGGCCGACTAGGT 60.686 63.158 0.00 0.00 43.70 3.08
2488 6502 1.677637 CCTCTTGGGCCGACTAGGTC 61.678 65.000 0.00 0.00 46.15 3.85
2494 6508 4.208686 GCCGACTAGGTCAGGCCG 62.209 72.222 16.51 0.00 42.09 6.13
2495 6509 4.208686 CCGACTAGGTCAGGCCGC 62.209 72.222 0.00 0.00 43.70 6.53
2496 6510 3.449227 CGACTAGGTCAGGCCGCA 61.449 66.667 0.00 0.00 43.70 5.69
2497 6511 2.496817 GACTAGGTCAGGCCGCAG 59.503 66.667 0.00 0.00 43.70 5.18
2498 6512 3.082579 GACTAGGTCAGGCCGCAGG 62.083 68.421 0.00 0.00 43.70 4.85
2527 6541 1.372683 CGGGCTACAGGGATGGATG 59.627 63.158 0.00 0.00 0.00 3.51
2528 6542 1.763770 GGGCTACAGGGATGGATGG 59.236 63.158 0.00 0.00 0.00 3.51
2544 6558 0.921256 ATGGGCCTAGCTGGGTTTCT 60.921 55.000 18.47 0.00 36.00 2.52
2613 6638 6.059787 AGAAATGAACAGAGGAGTAGCAAT 57.940 37.500 0.00 0.00 0.00 3.56
2664 6689 4.036262 CGGACTCACAAAAATGTGAAGGAA 59.964 41.667 12.23 0.00 46.60 3.36
2666 6691 5.507985 GGACTCACAAAAATGTGAAGGAAGG 60.508 44.000 12.23 3.33 46.60 3.46
2667 6692 5.200483 ACTCACAAAAATGTGAAGGAAGGA 58.800 37.500 12.23 0.00 46.60 3.36
2691 6716 8.188139 GGAAATAAAATGGTTCGAGCATTCTTA 58.812 33.333 0.53 8.42 44.57 2.10
2694 6719 2.760634 TGGTTCGAGCATTCTTAGCA 57.239 45.000 0.53 0.00 0.00 3.49
2709 6734 7.519649 GCATTCTTAGCAGAATTAAGATTCGCT 60.520 37.037 16.40 16.40 46.07 4.93
2729 6754 4.744137 CGCTCATGGTTGAATTTCAAAACA 59.256 37.500 13.21 14.71 38.22 2.83
2735 6760 7.767659 TCATGGTTGAATTTCAAAACACATTCA 59.232 29.630 13.21 0.00 38.22 2.57
2740 6765 6.998338 TGAATTTCAAAACACATTCAAACGG 58.002 32.000 0.00 0.00 33.65 4.44
2761 6786 5.303333 ACGGACTACAAATGGGTTGAAATTT 59.697 36.000 0.00 0.00 39.87 1.82
2804 6829 6.845908 ACTAGATGTGAATTATGGGCAGATT 58.154 36.000 0.00 0.00 0.00 2.40
2875 6901 4.342378 GGCTCCAAAGGAAGAAAAGAAGTT 59.658 41.667 0.00 0.00 0.00 2.66
2926 6952 3.574614 GTGCAAATGTGTTATGGGTGAC 58.425 45.455 0.00 0.00 0.00 3.67
2933 6959 2.976185 TGTGTTATGGGTGACTCCAAGA 59.024 45.455 0.00 0.00 40.62 3.02
2950 6976 4.881273 TCCAAGACAATGGAATGGATTACG 59.119 41.667 0.00 0.00 46.36 3.18
2957 6983 6.299141 ACAATGGAATGGATTACGATAGCTT 58.701 36.000 0.00 0.00 42.67 3.74
2968 6994 9.653287 TGGATTACGATAGCTTCCTAAATATTG 57.347 33.333 0.00 0.00 42.67 1.90
2974 7000 4.731313 AGCTTCCTAAATATTGGGAGGG 57.269 45.455 16.22 11.70 41.63 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 69 2.466846 CCGTCATACCGGTGTTATGTC 58.533 52.381 19.93 10.06 43.07 3.06
93 96 0.183492 TTGTTCCACTCTTGCTGCCT 59.817 50.000 0.00 0.00 0.00 4.75
97 100 2.427095 GGTGTTTTGTTCCACTCTTGCT 59.573 45.455 0.00 0.00 0.00 3.91
129 132 0.611714 GTAAAGGGTGGAAGGCTCGA 59.388 55.000 0.00 0.00 0.00 4.04
213 223 2.037902 TGACGCTGAAGGTTGTTCCATA 59.962 45.455 0.00 0.00 39.02 2.74
269 279 3.189702 TGTTTGGCTATGTTACCGCTTTC 59.810 43.478 0.00 0.00 0.00 2.62
298 308 1.409427 CTCTAACCCACCTTCCTAGCG 59.591 57.143 0.00 0.00 0.00 4.26
354 366 0.526211 TATATCGCGCTACCTGCCAG 59.474 55.000 5.56 0.00 38.78 4.85
370 382 5.390673 GCTAGTTGTTCGCTCTATCGCTATA 60.391 44.000 0.00 0.00 0.00 1.31
473 485 2.412870 TCGACTACGTCCGTTTGTCTA 58.587 47.619 17.12 8.76 40.69 2.59
494 506 0.037697 CCGGAGTTGTGTGGATTCGA 60.038 55.000 0.00 0.00 0.00 3.71
502 514 1.292992 GTTTCGTTCCGGAGTTGTGT 58.707 50.000 3.34 0.00 0.00 3.72
523 535 2.354403 GGTTGCTTCTCCCGTTAGCTTA 60.354 50.000 0.00 0.00 35.93 3.09
547 559 7.435192 GTGTTTACTATGTTGCTTGCTTCTTTT 59.565 33.333 0.00 0.00 0.00 2.27
640 653 1.354040 TTTGTTTGTGCACTTTGCCG 58.646 45.000 19.41 0.00 44.23 5.69
659 672 5.546621 TGAGCTCCACTTAACTTGTAGTT 57.453 39.130 12.15 0.00 41.97 2.24
661 674 7.439655 GGATATTGAGCTCCACTTAACTTGTAG 59.560 40.741 12.15 0.00 0.00 2.74
667 680 5.006746 CGTTGGATATTGAGCTCCACTTAAC 59.993 44.000 12.15 7.19 41.20 2.01
686 699 4.880886 TTGTCAATATGCATCTCGTTGG 57.119 40.909 0.19 0.00 0.00 3.77
694 707 5.465532 TGTGGTGTTTTGTCAATATGCAT 57.534 34.783 3.79 3.79 0.00 3.96
706 719 9.423061 GAGCTAAATAATTGAATGTGGTGTTTT 57.577 29.630 0.00 0.00 0.00 2.43
720 733 9.274206 GATTAAACGGGAGAGAGCTAAATAATT 57.726 33.333 0.00 0.00 0.00 1.40
730 743 6.127703 TGTTGAGTAGATTAAACGGGAGAGAG 60.128 42.308 0.00 0.00 0.00 3.20
765 778 3.506067 CCCCTCTTGTCATGTTAACCAAC 59.494 47.826 2.48 0.00 35.06 3.77
769 782 3.440522 GCTTCCCCTCTTGTCATGTTAAC 59.559 47.826 0.00 0.00 0.00 2.01
771 784 2.642311 TGCTTCCCCTCTTGTCATGTTA 59.358 45.455 0.00 0.00 0.00 2.41
778 791 2.683211 AATTGTGCTTCCCCTCTTGT 57.317 45.000 0.00 0.00 0.00 3.16
786 799 4.243007 AGTGCAGTTTAATTGTGCTTCC 57.757 40.909 0.00 0.00 38.09 3.46
788 801 6.824305 AGATAGTGCAGTTTAATTGTGCTT 57.176 33.333 0.00 0.00 38.09 3.91
789 802 7.066284 CCTTAGATAGTGCAGTTTAATTGTGCT 59.934 37.037 0.00 0.00 38.09 4.40
790 803 7.065803 TCCTTAGATAGTGCAGTTTAATTGTGC 59.934 37.037 0.00 0.00 37.73 4.57
803 816 7.523873 GCCCCATTTAAATTCCTTAGATAGTGC 60.524 40.741 0.00 0.00 0.00 4.40
807 820 6.007703 CGGCCCCATTTAAATTCCTTAGATA 58.992 40.000 0.00 0.00 0.00 1.98
808 821 4.832823 CGGCCCCATTTAAATTCCTTAGAT 59.167 41.667 0.00 0.00 0.00 1.98
814 827 3.897141 TTTCGGCCCCATTTAAATTCC 57.103 42.857 0.00 0.00 0.00 3.01
815 828 4.570930 TGTTTTCGGCCCCATTTAAATTC 58.429 39.130 0.00 0.00 0.00 2.17
832 845 9.892130 TTTACCAGGATTATTGTTTGTTGTTTT 57.108 25.926 0.00 0.00 0.00 2.43
838 851 6.382859 GGGGATTTACCAGGATTATTGTTTGT 59.617 38.462 0.00 0.00 41.20 2.83
846 859 4.691376 GCACATGGGGATTTACCAGGATTA 60.691 45.833 0.00 0.00 42.09 1.75
850 863 1.341877 TGCACATGGGGATTTACCAGG 60.342 52.381 0.00 0.00 44.83 4.45
854 867 5.567138 GCTATATGCACATGGGGATTTAC 57.433 43.478 7.47 0.00 42.31 2.01
901 914 9.316730 ACATCATGATAACAACATTTAAATGGC 57.683 29.630 27.43 11.10 40.70 4.40
919 932 3.998341 CGCATATGTCATCCACATCATGA 59.002 43.478 4.29 0.00 42.62 3.07
922 935 3.070015 ACTCGCATATGTCATCCACATCA 59.930 43.478 4.29 0.00 42.62 3.07
927 940 4.452114 GCATAAACTCGCATATGTCATCCA 59.548 41.667 4.29 0.00 33.12 3.41
964 977 5.471116 GCTCCATAATATGCTCATGTCAACA 59.529 40.000 0.00 0.00 0.00 3.33
985 998 1.099879 GCCATGGTGACCAGATGCTC 61.100 60.000 14.67 0.00 36.75 4.26
991 1004 2.040544 GTTCCGCCATGGTGACCAG 61.041 63.158 27.12 9.87 36.75 4.00
993 1006 3.124921 CGTTCCGCCATGGTGACC 61.125 66.667 27.12 12.14 39.52 4.02
998 1011 2.202932 CCTCTCGTTCCGCCATGG 60.203 66.667 7.63 7.63 40.09 3.66
1000 1013 3.470888 CCCCTCTCGTTCCGCCAT 61.471 66.667 0.00 0.00 0.00 4.40
1009 1022 2.423446 GCTATGGCACCCCTCTCG 59.577 66.667 0.00 0.00 38.54 4.04
1010 1023 2.134287 TCGCTATGGCACCCCTCTC 61.134 63.158 0.74 0.00 38.60 3.20
1011 1024 2.041922 TCGCTATGGCACCCCTCT 60.042 61.111 0.74 0.00 38.60 3.69
1012 1025 2.109181 GTCGCTATGGCACCCCTC 59.891 66.667 0.74 0.00 38.60 4.30
1023 1038 3.153676 TCATTTTCGGATTCGTCGCTA 57.846 42.857 0.00 0.00 37.69 4.26
1024 1039 2.004583 TCATTTTCGGATTCGTCGCT 57.995 45.000 0.00 0.00 37.69 4.93
1026 1041 2.599848 GGCATCATTTTCGGATTCGTCG 60.600 50.000 0.00 0.00 37.69 5.12
1036 1051 2.747396 TGTGCCTTGGCATCATTTTC 57.253 45.000 17.86 3.57 0.00 2.29
1049 1064 1.335132 ACCGGAACCGATATGTGCCT 61.335 55.000 9.46 0.00 42.83 4.75
1051 1066 1.862827 GTTACCGGAACCGATATGTGC 59.137 52.381 9.46 0.00 42.83 4.57
1083 1099 2.027460 CACACCTTTTGCACCGGC 59.973 61.111 0.00 0.00 41.68 6.13
1109 1128 2.019249 CCACCTTTCATCGCATGACAT 58.981 47.619 0.00 0.00 39.39 3.06
1111 1130 0.734889 CCCACCTTTCATCGCATGAC 59.265 55.000 0.00 0.00 39.39 3.06
1118 1137 0.681243 GGAGCACCCCACCTTTCATC 60.681 60.000 0.00 0.00 0.00 2.92
1120 1139 1.774217 AGGAGCACCCCACCTTTCA 60.774 57.895 0.00 0.00 36.73 2.69
1122 1141 2.845345 CCAGGAGCACCCCACCTTT 61.845 63.158 0.00 0.00 36.73 3.11
1123 1142 3.260100 CCAGGAGCACCCCACCTT 61.260 66.667 0.00 0.00 36.73 3.50
1124 1143 2.706341 TAACCAGGAGCACCCCACCT 62.706 60.000 0.00 0.00 36.73 4.00
1162 1181 0.544697 ATTACCCGTTTCCGAGCCAT 59.455 50.000 0.00 0.00 35.63 4.40
1163 1182 0.391927 CATTACCCGTTTCCGAGCCA 60.392 55.000 0.00 0.00 35.63 4.75
1164 1183 1.712018 GCATTACCCGTTTCCGAGCC 61.712 60.000 0.00 0.00 35.63 4.70
1165 1184 1.719709 GCATTACCCGTTTCCGAGC 59.280 57.895 0.00 0.00 35.63 5.03
1166 1185 2.003672 CGCATTACCCGTTTCCGAG 58.996 57.895 0.00 0.00 35.63 4.63
1167 1186 2.101835 GCGCATTACCCGTTTCCGA 61.102 57.895 0.30 0.00 35.63 4.55
1168 1187 1.913451 TTGCGCATTACCCGTTTCCG 61.913 55.000 12.75 0.00 0.00 4.30
1169 1188 0.241481 TTTGCGCATTACCCGTTTCC 59.759 50.000 12.75 0.00 0.00 3.13
1170 1189 2.271821 ATTTGCGCATTACCCGTTTC 57.728 45.000 12.75 0.00 0.00 2.78
1171 1190 3.851976 TTATTTGCGCATTACCCGTTT 57.148 38.095 12.75 0.00 0.00 3.60
1172 1191 5.502153 TTATTATTTGCGCATTACCCGTT 57.498 34.783 12.75 0.00 0.00 4.44
1173 1192 5.502153 TTTATTATTTGCGCATTACCCGT 57.498 34.783 12.75 0.00 0.00 5.28
1174 1193 5.744345 TGTTTTATTATTTGCGCATTACCCG 59.256 36.000 12.75 0.00 0.00 5.28
1175 1194 7.563270 CATGTTTTATTATTTGCGCATTACCC 58.437 34.615 12.75 0.00 0.00 3.69
1176 1195 7.062848 GCATGTTTTATTATTTGCGCATTACC 58.937 34.615 12.75 0.00 0.00 2.85
1177 1196 7.616673 TGCATGTTTTATTATTTGCGCATTAC 58.383 30.769 12.75 0.00 32.90 1.89
1178 1197 7.761651 TGCATGTTTTATTATTTGCGCATTA 57.238 28.000 12.75 2.29 32.90 1.90
1179 1198 6.659361 TGCATGTTTTATTATTTGCGCATT 57.341 29.167 12.75 4.47 32.90 3.56
1180 1199 6.479331 TCATGCATGTTTTATTATTTGCGCAT 59.521 30.769 25.43 0.00 36.86 4.73
1181 1200 5.809051 TCATGCATGTTTTATTATTTGCGCA 59.191 32.000 25.43 5.66 32.90 6.09
1182 1201 6.122125 GTCATGCATGTTTTATTATTTGCGC 58.878 36.000 25.43 0.00 32.90 6.09
1183 1202 7.219372 TGTCATGCATGTTTTATTATTTGCG 57.781 32.000 25.43 0.00 32.90 4.85
1184 1203 9.264782 GTTTGTCATGCATGTTTTATTATTTGC 57.735 29.630 25.43 2.06 0.00 3.68
1188 1207 9.022915 CGATGTTTGTCATGCATGTTTTATTAT 57.977 29.630 25.43 13.08 36.83 1.28
1189 1208 7.487509 CCGATGTTTGTCATGCATGTTTTATTA 59.512 33.333 25.43 9.16 36.83 0.98
1190 1209 6.310956 CCGATGTTTGTCATGCATGTTTTATT 59.689 34.615 25.43 7.38 36.83 1.40
1191 1210 5.806502 CCGATGTTTGTCATGCATGTTTTAT 59.193 36.000 25.43 13.47 36.83 1.40
1192 1211 5.048434 TCCGATGTTTGTCATGCATGTTTTA 60.048 36.000 25.43 4.01 36.83 1.52
1193 1212 3.989167 CCGATGTTTGTCATGCATGTTTT 59.011 39.130 25.43 5.78 36.83 2.43
1194 1213 3.255395 TCCGATGTTTGTCATGCATGTTT 59.745 39.130 25.43 4.78 36.83 2.83
1195 1214 2.819019 TCCGATGTTTGTCATGCATGTT 59.181 40.909 25.43 4.11 36.83 2.71
1196 1215 2.435422 TCCGATGTTTGTCATGCATGT 58.565 42.857 25.43 4.94 36.83 3.21
1197 1216 3.703286 ATCCGATGTTTGTCATGCATG 57.297 42.857 21.07 21.07 36.83 4.06
1198 1217 4.198530 TGTATCCGATGTTTGTCATGCAT 58.801 39.130 0.00 0.00 36.83 3.96
1199 1218 3.604582 TGTATCCGATGTTTGTCATGCA 58.395 40.909 0.00 0.00 36.83 3.96
1200 1219 4.530388 CATGTATCCGATGTTTGTCATGC 58.470 43.478 0.00 0.00 36.83 4.06
1201 1220 4.035441 TGCATGTATCCGATGTTTGTCATG 59.965 41.667 0.00 0.00 36.83 3.07
1202 1221 4.198530 TGCATGTATCCGATGTTTGTCAT 58.801 39.130 0.00 0.00 39.77 3.06
1203 1222 3.604582 TGCATGTATCCGATGTTTGTCA 58.395 40.909 0.00 0.00 0.00 3.58
1204 1223 4.342772 GTTGCATGTATCCGATGTTTGTC 58.657 43.478 0.00 0.00 0.00 3.18
1205 1224 3.128589 GGTTGCATGTATCCGATGTTTGT 59.871 43.478 0.00 0.00 0.00 2.83
1206 1225 3.128415 TGGTTGCATGTATCCGATGTTTG 59.872 43.478 6.44 0.00 0.00 2.93
1207 1226 3.128589 GTGGTTGCATGTATCCGATGTTT 59.871 43.478 6.44 0.00 0.00 2.83
1208 1227 2.682856 GTGGTTGCATGTATCCGATGTT 59.317 45.455 6.44 0.00 0.00 2.71
1209 1228 2.288666 GTGGTTGCATGTATCCGATGT 58.711 47.619 6.44 0.00 0.00 3.06
1210 1229 1.603802 GGTGGTTGCATGTATCCGATG 59.396 52.381 6.44 0.00 0.00 3.84
1211 1230 1.490490 AGGTGGTTGCATGTATCCGAT 59.510 47.619 6.44 0.00 0.00 4.18
1212 1231 0.908910 AGGTGGTTGCATGTATCCGA 59.091 50.000 6.44 0.00 0.00 4.55
1213 1232 1.299541 GAGGTGGTTGCATGTATCCG 58.700 55.000 6.44 0.00 0.00 4.18
1214 1233 1.299541 CGAGGTGGTTGCATGTATCC 58.700 55.000 4.07 4.07 0.00 2.59
1215 1234 2.024176 ACGAGGTGGTTGCATGTATC 57.976 50.000 0.00 0.00 0.00 2.24
1216 1235 2.235155 TGTACGAGGTGGTTGCATGTAT 59.765 45.455 0.00 0.00 0.00 2.29
1217 1236 1.619332 TGTACGAGGTGGTTGCATGTA 59.381 47.619 0.00 0.00 0.00 2.29
1218 1237 0.394938 TGTACGAGGTGGTTGCATGT 59.605 50.000 0.00 0.00 0.00 3.21
1219 1238 0.796312 GTGTACGAGGTGGTTGCATG 59.204 55.000 0.00 0.00 0.00 4.06
1220 1239 0.669318 CGTGTACGAGGTGGTTGCAT 60.669 55.000 0.00 0.00 43.02 3.96
1221 1240 1.300311 CGTGTACGAGGTGGTTGCA 60.300 57.895 0.00 0.00 43.02 4.08
1222 1241 2.664436 GCGTGTACGAGGTGGTTGC 61.664 63.158 8.82 0.00 43.02 4.17
1223 1242 0.669318 ATGCGTGTACGAGGTGGTTG 60.669 55.000 8.82 0.00 43.02 3.77
1224 1243 0.389426 GATGCGTGTACGAGGTGGTT 60.389 55.000 8.82 0.00 43.02 3.67
1225 1244 1.214589 GATGCGTGTACGAGGTGGT 59.785 57.895 8.82 0.00 43.02 4.16
1226 1245 1.076533 GTGATGCGTGTACGAGGTGG 61.077 60.000 8.82 0.00 43.02 4.61
1227 1246 0.388006 TGTGATGCGTGTACGAGGTG 60.388 55.000 8.82 0.00 43.02 4.00
1228 1247 0.530744 ATGTGATGCGTGTACGAGGT 59.469 50.000 8.82 0.00 43.02 3.85
1229 1248 0.923403 CATGTGATGCGTGTACGAGG 59.077 55.000 8.82 0.00 43.02 4.63
1240 1259 3.187022 CCATGTACCGTATGCATGTGATG 59.813 47.826 10.16 6.08 46.80 3.07
1241 1260 3.402110 CCATGTACCGTATGCATGTGAT 58.598 45.455 10.16 0.00 46.80 3.06
1242 1261 2.832563 CCATGTACCGTATGCATGTGA 58.167 47.619 10.16 0.00 46.80 3.58
1243 1262 1.264020 GCCATGTACCGTATGCATGTG 59.736 52.381 10.16 0.76 46.80 3.21
1244 1263 1.593196 GCCATGTACCGTATGCATGT 58.407 50.000 10.16 0.85 46.80 3.21
1246 1265 0.105964 ACGCCATGTACCGTATGCAT 59.894 50.000 3.79 3.79 35.69 3.96
1247 1266 0.528901 GACGCCATGTACCGTATGCA 60.529 55.000 0.00 0.00 37.87 3.96
1248 1267 1.545614 CGACGCCATGTACCGTATGC 61.546 60.000 3.73 0.00 37.87 3.14
1249 1268 0.248743 ACGACGCCATGTACCGTATG 60.249 55.000 0.00 3.27 37.87 2.39
1250 1269 0.457035 AACGACGCCATGTACCGTAT 59.543 50.000 0.00 0.00 37.87 3.06
1251 1270 0.179166 GAACGACGCCATGTACCGTA 60.179 55.000 0.00 0.00 37.87 4.02
1252 1271 1.444895 GAACGACGCCATGTACCGT 60.445 57.895 0.00 3.41 40.85 4.83
1253 1272 2.162754 GGAACGACGCCATGTACCG 61.163 63.158 0.00 0.00 0.00 4.02
1254 1273 3.790177 GGAACGACGCCATGTACC 58.210 61.111 0.00 0.00 0.00 3.34
1267 1286 2.166254 TCGAAGGTATAACCACCGGAAC 59.834 50.000 9.46 0.00 43.84 3.62
1268 1287 2.455557 TCGAAGGTATAACCACCGGAA 58.544 47.619 9.46 0.00 43.84 4.30
1269 1288 2.142356 TCGAAGGTATAACCACCGGA 57.858 50.000 9.46 0.00 43.84 5.14
1270 1289 2.965572 TTCGAAGGTATAACCACCGG 57.034 50.000 0.00 0.00 43.84 5.28
1271 1290 4.049546 TGATTCGAAGGTATAACCACCG 57.950 45.455 3.35 1.79 43.84 4.94
1272 1291 4.213482 GCATGATTCGAAGGTATAACCACC 59.787 45.833 3.35 0.00 41.95 4.61
1273 1292 4.084537 CGCATGATTCGAAGGTATAACCAC 60.085 45.833 3.35 0.00 41.95 4.16
1274 1293 4.055360 CGCATGATTCGAAGGTATAACCA 58.945 43.478 3.35 0.00 41.95 3.67
1275 1294 4.056050 ACGCATGATTCGAAGGTATAACC 58.944 43.478 3.35 0.00 38.99 2.85
1276 1295 5.652744 AACGCATGATTCGAAGGTATAAC 57.347 39.130 3.35 0.00 0.00 1.89
1277 1296 5.900339 GAACGCATGATTCGAAGGTATAA 57.100 39.130 3.35 0.00 0.00 0.98
1286 1305 1.636340 GTCCCGAACGCATGATTCG 59.364 57.895 19.93 19.93 46.67 3.34
1287 1306 1.636340 CGTCCCGAACGCATGATTC 59.364 57.895 0.00 0.00 45.76 2.52
1288 1307 3.794270 CGTCCCGAACGCATGATT 58.206 55.556 0.00 0.00 45.76 2.57
1296 1315 0.455126 GAACTCGTACCGTCCCGAAC 60.455 60.000 0.00 0.00 31.92 3.95
1297 1316 1.875963 GAACTCGTACCGTCCCGAA 59.124 57.895 0.00 0.00 31.92 4.30
1298 1317 2.390599 CGAACTCGTACCGTCCCGA 61.391 63.158 0.00 0.00 34.11 5.14
1299 1318 1.709147 ATCGAACTCGTACCGTCCCG 61.709 60.000 0.00 0.00 40.80 5.14
1300 1319 0.248377 CATCGAACTCGTACCGTCCC 60.248 60.000 0.00 0.00 40.80 4.46
1301 1320 0.248377 CCATCGAACTCGTACCGTCC 60.248 60.000 0.00 0.00 40.80 4.79
1302 1321 0.248377 CCCATCGAACTCGTACCGTC 60.248 60.000 0.00 0.00 40.80 4.79
1303 1322 0.677731 TCCCATCGAACTCGTACCGT 60.678 55.000 0.00 0.00 40.80 4.83
1304 1323 0.666913 ATCCCATCGAACTCGTACCG 59.333 55.000 0.00 0.00 40.80 4.02
1305 1324 1.407979 ACATCCCATCGAACTCGTACC 59.592 52.381 0.00 0.00 40.80 3.34
1306 1325 2.865343 ACATCCCATCGAACTCGTAC 57.135 50.000 0.00 0.00 40.80 3.67
1307 1326 3.548770 ACTACATCCCATCGAACTCGTA 58.451 45.455 0.00 0.00 40.80 3.43
1308 1327 2.376109 ACTACATCCCATCGAACTCGT 58.624 47.619 0.00 0.00 40.80 4.18
1309 1328 3.116300 CAACTACATCCCATCGAACTCG 58.884 50.000 0.00 0.00 41.45 4.18
1310 1329 4.386867 TCAACTACATCCCATCGAACTC 57.613 45.455 0.00 0.00 0.00 3.01
1311 1330 4.223032 ACTTCAACTACATCCCATCGAACT 59.777 41.667 0.00 0.00 0.00 3.01
1312 1331 4.504858 ACTTCAACTACATCCCATCGAAC 58.495 43.478 0.00 0.00 0.00 3.95
1313 1332 4.819105 ACTTCAACTACATCCCATCGAA 57.181 40.909 0.00 0.00 0.00 3.71
1314 1333 4.954202 ACTACTTCAACTACATCCCATCGA 59.046 41.667 0.00 0.00 0.00 3.59
1315 1334 5.043903 CACTACTTCAACTACATCCCATCG 58.956 45.833 0.00 0.00 0.00 3.84
1316 1335 5.104900 ACCACTACTTCAACTACATCCCATC 60.105 44.000 0.00 0.00 0.00 3.51
1317 1336 4.783227 ACCACTACTTCAACTACATCCCAT 59.217 41.667 0.00 0.00 0.00 4.00
1318 1337 4.164981 ACCACTACTTCAACTACATCCCA 58.835 43.478 0.00 0.00 0.00 4.37
1319 1338 4.820894 ACCACTACTTCAACTACATCCC 57.179 45.455 0.00 0.00 0.00 3.85
1320 1339 6.098017 GTGTACCACTACTTCAACTACATCC 58.902 44.000 0.00 0.00 0.00 3.51
1321 1340 5.798934 CGTGTACCACTACTTCAACTACATC 59.201 44.000 0.00 0.00 31.34 3.06
1322 1341 5.336213 CCGTGTACCACTACTTCAACTACAT 60.336 44.000 0.00 0.00 31.34 2.29
1323 1342 4.022935 CCGTGTACCACTACTTCAACTACA 60.023 45.833 0.00 0.00 31.34 2.74
1324 1343 4.479619 CCGTGTACCACTACTTCAACTAC 58.520 47.826 0.00 0.00 31.34 2.73
1325 1344 3.507233 CCCGTGTACCACTACTTCAACTA 59.493 47.826 0.00 0.00 31.34 2.24
1326 1345 2.298163 CCCGTGTACCACTACTTCAACT 59.702 50.000 0.00 0.00 31.34 3.16
1327 1346 2.036346 ACCCGTGTACCACTACTTCAAC 59.964 50.000 0.00 0.00 31.34 3.18
1328 1347 2.297033 GACCCGTGTACCACTACTTCAA 59.703 50.000 0.00 0.00 31.34 2.69
1329 1348 1.888512 GACCCGTGTACCACTACTTCA 59.111 52.381 0.00 0.00 31.34 3.02
1330 1349 2.165998 AGACCCGTGTACCACTACTTC 58.834 52.381 0.00 0.00 31.34 3.01
1331 1350 2.298163 CAAGACCCGTGTACCACTACTT 59.702 50.000 0.00 0.00 31.34 2.24
1332 1351 1.891150 CAAGACCCGTGTACCACTACT 59.109 52.381 0.00 0.00 31.34 2.57
1333 1352 1.615392 ACAAGACCCGTGTACCACTAC 59.385 52.381 0.00 0.00 31.34 2.73
1334 1353 1.888512 GACAAGACCCGTGTACCACTA 59.111 52.381 0.00 0.00 31.34 2.74
1335 1354 0.677842 GACAAGACCCGTGTACCACT 59.322 55.000 0.00 0.00 31.34 4.00
1336 1355 0.665369 CGACAAGACCCGTGTACCAC 60.665 60.000 0.00 0.00 0.00 4.16
1337 1356 1.661480 CGACAAGACCCGTGTACCA 59.339 57.895 0.00 0.00 0.00 3.25
1338 1357 1.080298 CCGACAAGACCCGTGTACC 60.080 63.158 0.00 0.00 0.00 3.34
1339 1358 0.529378 ATCCGACAAGACCCGTGTAC 59.471 55.000 0.00 0.00 0.00 2.90
1340 1359 0.813184 GATCCGACAAGACCCGTGTA 59.187 55.000 0.00 0.00 0.00 2.90
1341 1360 1.590147 GATCCGACAAGACCCGTGT 59.410 57.895 0.00 0.00 0.00 4.49
1342 1361 1.153628 GGATCCGACAAGACCCGTG 60.154 63.158 0.00 0.00 0.00 4.94
1343 1362 1.608336 TGGATCCGACAAGACCCGT 60.608 57.895 7.39 0.00 0.00 5.28
1344 1363 1.153628 GTGGATCCGACAAGACCCG 60.154 63.158 7.39 0.00 0.00 5.28
1345 1364 1.153628 CGTGGATCCGACAAGACCC 60.154 63.158 7.39 0.00 0.00 4.46
1346 1365 1.810030 GCGTGGATCCGACAAGACC 60.810 63.158 7.39 0.00 0.00 3.85
1347 1366 2.158959 CGCGTGGATCCGACAAGAC 61.159 63.158 7.39 0.00 0.00 3.01
1348 1367 2.180769 CGCGTGGATCCGACAAGA 59.819 61.111 7.39 0.00 0.00 3.02
1349 1368 2.180769 TCGCGTGGATCCGACAAG 59.819 61.111 5.77 3.95 0.00 3.16
1354 1373 3.802008 CTACCGTCGCGTGGATCCG 62.802 68.421 23.32 9.80 0.00 4.18
1355 1374 2.025727 CTACCGTCGCGTGGATCC 59.974 66.667 23.32 4.20 0.00 3.36
1356 1375 1.298190 GACTACCGTCGCGTGGATC 60.298 63.158 23.32 14.42 0.00 3.36
1357 1376 1.381928 ATGACTACCGTCGCGTGGAT 61.382 55.000 23.32 11.95 43.21 3.41
1358 1377 0.744057 TATGACTACCGTCGCGTGGA 60.744 55.000 23.32 8.91 43.21 4.02
1359 1378 0.590732 GTATGACTACCGTCGCGTGG 60.591 60.000 16.64 16.64 43.21 4.94
1360 1379 0.097499 TGTATGACTACCGTCGCGTG 59.903 55.000 5.77 0.00 43.21 5.34
1361 1380 0.097674 GTGTATGACTACCGTCGCGT 59.902 55.000 5.77 0.00 43.21 6.01
1362 1381 0.922560 CGTGTATGACTACCGTCGCG 60.923 60.000 0.00 0.00 43.21 5.87
1363 1382 0.097674 ACGTGTATGACTACCGTCGC 59.902 55.000 0.00 0.00 43.21 5.19
1374 1393 4.027945 CCGAACATCTACGAAACGTGTATG 60.028 45.833 7.05 11.54 41.39 2.39
1375 1394 4.100529 CCGAACATCTACGAAACGTGTAT 58.899 43.478 7.05 0.00 41.39 2.29
1379 1398 1.343506 GCCGAACATCTACGAAACGT 58.656 50.000 1.91 1.91 44.35 3.99
1382 1401 0.458889 CGGGCCGAACATCTACGAAA 60.459 55.000 24.41 0.00 0.00 3.46
1391 1410 2.854401 TACAACGACGGGCCGAACA 61.854 57.895 35.78 6.99 0.00 3.18
1398 1417 2.030958 GCCCAAGTACAACGACGGG 61.031 63.158 0.00 0.00 36.71 5.28
1416 1435 2.349438 CGTCACCATGTGTTTTCTTCCG 60.349 50.000 0.00 0.00 34.79 4.30
1468 1498 1.226746 GGGTTCCGTCAAGTTCAGTG 58.773 55.000 0.00 0.00 0.00 3.66
1469 1499 0.834612 TGGGTTCCGTCAAGTTCAGT 59.165 50.000 0.00 0.00 0.00 3.41
1470 1500 1.226746 GTGGGTTCCGTCAAGTTCAG 58.773 55.000 0.00 0.00 0.00 3.02
1529 1559 2.442188 AATTTCGACGACGCTCGCC 61.442 57.895 1.48 0.00 45.12 5.54
1530 1560 1.295220 CAATTTCGACGACGCTCGC 60.295 57.895 1.48 0.00 45.12 5.03
1531 1561 1.340465 CCAATTTCGACGACGCTCG 59.660 57.895 1.48 11.80 46.93 5.03
1532 1562 1.058903 GCCAATTTCGACGACGCTC 59.941 57.895 1.48 0.00 39.58 5.03
1533 1563 2.726691 CGCCAATTTCGACGACGCT 61.727 57.895 1.48 0.00 39.58 5.07
1534 1564 2.275812 CGCCAATTTCGACGACGC 60.276 61.111 1.48 0.00 39.58 5.19
1535 1565 2.394136 CCGCCAATTTCGACGACG 59.606 61.111 0.00 0.00 41.26 5.12
1536 1566 2.782615 CCCGCCAATTTCGACGAC 59.217 61.111 0.00 0.00 0.00 4.34
1537 1567 3.122323 GCCCGCCAATTTCGACGA 61.122 61.111 0.00 0.00 0.00 4.20
1538 1568 4.514569 CGCCCGCCAATTTCGACG 62.515 66.667 0.00 0.00 0.00 5.12
1539 1569 3.376914 GACGCCCGCCAATTTCGAC 62.377 63.158 0.00 0.00 0.00 4.20
1540 1570 3.122323 GACGCCCGCCAATTTCGA 61.122 61.111 0.00 0.00 0.00 3.71
1541 1571 4.514569 CGACGCCCGCCAATTTCG 62.515 66.667 0.00 0.00 0.00 3.46
1542 1572 3.428282 ACGACGCCCGCCAATTTC 61.428 61.111 0.00 0.00 43.32 2.17
1543 1573 3.732892 CACGACGCCCGCCAATTT 61.733 61.111 0.00 0.00 43.32 1.82
1545 1575 4.071875 TACACGACGCCCGCCAAT 62.072 61.111 0.00 0.00 43.32 3.16
1546 1576 4.728102 CTACACGACGCCCGCCAA 62.728 66.667 0.00 0.00 43.32 4.52
1550 1580 2.739704 TACGACTACACGACGCCCG 61.740 63.158 0.00 0.00 45.44 6.13
1551 1581 1.226128 GTACGACTACACGACGCCC 60.226 63.158 0.00 0.00 34.15 6.13
1553 1583 1.226128 GGGTACGACTACACGACGC 60.226 63.158 0.00 0.00 34.15 5.19
1554 1584 0.798776 AAGGGTACGACTACACGACG 59.201 55.000 0.00 0.00 37.03 5.12
1555 1585 1.201965 CGAAGGGTACGACTACACGAC 60.202 57.143 0.00 0.00 37.03 4.34
1556 1586 1.078709 CGAAGGGTACGACTACACGA 58.921 55.000 0.00 0.00 37.03 4.35
1557 1587 1.078709 TCGAAGGGTACGACTACACG 58.921 55.000 0.00 0.00 34.85 4.49
1558 1588 2.223433 CCATCGAAGGGTACGACTACAC 60.223 54.545 0.00 0.00 42.37 2.90
1559 1589 2.019249 CCATCGAAGGGTACGACTACA 58.981 52.381 0.00 0.00 42.37 2.74
1565 1595 1.003116 CGACTACCATCGAAGGGTACG 60.003 57.143 12.02 12.11 45.13 3.67
1570 1600 2.527100 GTGAACGACTACCATCGAAGG 58.473 52.381 4.85 4.85 45.13 3.46
1604 1634 1.647545 CGAGACACAATGGCGCCAAT 61.648 55.000 36.33 25.02 0.00 3.16
1662 1692 2.420022 CACCGAAACATCATCAAGGTCC 59.580 50.000 0.00 0.00 0.00 4.46
1709 1739 1.272490 CTCGAAGACCACCTTGTGCTA 59.728 52.381 0.00 0.00 34.68 3.49
1719 1749 1.827399 GCCAAGTCCCTCGAAGACCA 61.827 60.000 10.76 0.00 34.67 4.02
1770 1800 2.107950 TGGTTAGATTGCTTGGACCG 57.892 50.000 0.00 0.00 0.00 4.79
1782 1812 1.271163 CGACCTTGCCCTTTGGTTAGA 60.271 52.381 0.00 0.00 33.74 2.10
1856 1886 2.037901 CTGCTTCCCTGCTCTAGATCA 58.962 52.381 0.00 0.00 0.00 2.92
1859 1889 1.687682 CCTCTGCTTCCCTGCTCTAGA 60.688 57.143 0.00 0.00 0.00 2.43
1860 1890 0.752054 CCTCTGCTTCCCTGCTCTAG 59.248 60.000 0.00 0.00 0.00 2.43
1972 2005 4.681978 GTCACCCTCGCCGTTGCT 62.682 66.667 0.00 0.00 34.43 3.91
1975 2008 2.989055 CTTGTGTCACCCTCGCCGTT 62.989 60.000 0.00 0.00 0.00 4.44
1990 2023 2.974698 GTGCGACAGCTGCCTTGT 60.975 61.111 15.27 0.00 45.42 3.16
1997 2030 4.074526 ATGCTCCGTGCGACAGCT 62.075 61.111 13.71 0.00 46.63 4.24
2002 2035 4.794439 CGTCCATGCTCCGTGCGA 62.794 66.667 0.00 0.00 46.63 5.10
2022 2055 2.364842 AGCAGCCCTCGTCCTCAT 60.365 61.111 0.00 0.00 0.00 2.90
2066 6071 2.757917 GCAGCCTCCTCCTCGTCT 60.758 66.667 0.00 0.00 0.00 4.18
2119 6124 2.045926 GCGCCCAACCTCTGTCAT 60.046 61.111 0.00 0.00 0.00 3.06
2226 6231 2.665000 CGCCCTGCTTCTTCCTCA 59.335 61.111 0.00 0.00 0.00 3.86
2256 6262 0.517316 GCCGTCCAAGTTACTGCTTG 59.483 55.000 0.00 0.00 43.88 4.01
2257 6263 0.107831 TGCCGTCCAAGTTACTGCTT 59.892 50.000 0.00 0.00 0.00 3.91
2258 6264 0.107831 TTGCCGTCCAAGTTACTGCT 59.892 50.000 0.00 0.00 0.00 4.24
2259 6265 0.517316 CTTGCCGTCCAAGTTACTGC 59.483 55.000 5.23 0.00 44.74 4.40
2274 6280 2.034687 TGCTTCTCCTGGCCTTGC 59.965 61.111 3.32 0.00 0.00 4.01
2275 6281 0.392729 CTCTGCTTCTCCTGGCCTTG 60.393 60.000 3.32 0.00 0.00 3.61
2276 6282 1.560866 CCTCTGCTTCTCCTGGCCTT 61.561 60.000 3.32 0.00 0.00 4.35
2277 6283 1.994507 CCTCTGCTTCTCCTGGCCT 60.995 63.158 3.32 0.00 0.00 5.19
2278 6284 1.992277 TCCTCTGCTTCTCCTGGCC 60.992 63.158 0.00 0.00 0.00 5.36
2279 6285 1.220477 GTCCTCTGCTTCTCCTGGC 59.780 63.158 0.00 0.00 0.00 4.85
2280 6286 1.515020 CGTCCTCTGCTTCTCCTGG 59.485 63.158 0.00 0.00 0.00 4.45
2281 6287 1.515020 CCGTCCTCTGCTTCTCCTG 59.485 63.158 0.00 0.00 0.00 3.86
2282 6288 1.684049 CCCGTCCTCTGCTTCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
2283 6289 2.726351 CCCCGTCCTCTGCTTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
2372 6383 1.039785 CATCGCACAGGGAGAGGAGA 61.040 60.000 0.00 0.00 0.00 3.71
2406 6420 0.902516 CCTCGATCCCCTCCATCCTC 60.903 65.000 0.00 0.00 0.00 3.71
2407 6421 1.157276 CCTCGATCCCCTCCATCCT 59.843 63.158 0.00 0.00 0.00 3.24
2408 6422 0.902516 CTCCTCGATCCCCTCCATCC 60.903 65.000 0.00 0.00 0.00 3.51
2409 6423 0.902516 CCTCCTCGATCCCCTCCATC 60.903 65.000 0.00 0.00 0.00 3.51
2410 6424 1.157276 CCTCCTCGATCCCCTCCAT 59.843 63.158 0.00 0.00 0.00 3.41
2411 6425 2.609339 CCTCCTCGATCCCCTCCA 59.391 66.667 0.00 0.00 0.00 3.86
2412 6426 2.203714 CCCTCCTCGATCCCCTCC 60.204 72.222 0.00 0.00 0.00 4.30
2413 6427 0.830023 CTTCCCTCCTCGATCCCCTC 60.830 65.000 0.00 0.00 0.00 4.30
2414 6428 1.234529 CTTCCCTCCTCGATCCCCT 59.765 63.158 0.00 0.00 0.00 4.79
2415 6429 1.839296 CCTTCCCTCCTCGATCCCC 60.839 68.421 0.00 0.00 0.00 4.81
2416 6430 2.512355 GCCTTCCCTCCTCGATCCC 61.512 68.421 0.00 0.00 0.00 3.85
2417 6431 2.512355 GGCCTTCCCTCCTCGATCC 61.512 68.421 0.00 0.00 0.00 3.36
2418 6432 1.753368 CTGGCCTTCCCTCCTCGATC 61.753 65.000 3.32 0.00 0.00 3.69
2419 6433 1.764054 CTGGCCTTCCCTCCTCGAT 60.764 63.158 3.32 0.00 0.00 3.59
2420 6434 2.364317 CTGGCCTTCCCTCCTCGA 60.364 66.667 3.32 0.00 0.00 4.04
2421 6435 4.168291 GCTGGCCTTCCCTCCTCG 62.168 72.222 3.32 0.00 0.00 4.63
2422 6436 2.549169 CTTGCTGGCCTTCCCTCCTC 62.549 65.000 3.32 0.00 0.00 3.71
2423 6437 2.532715 TTGCTGGCCTTCCCTCCT 60.533 61.111 3.32 0.00 0.00 3.69
2424 6438 2.044551 CTTGCTGGCCTTCCCTCC 60.045 66.667 3.32 0.00 0.00 4.30
2425 6439 2.753446 GCTTGCTGGCCTTCCCTC 60.753 66.667 3.32 0.00 0.00 4.30
2426 6440 3.580604 CTGCTTGCTGGCCTTCCCT 62.581 63.158 3.32 0.00 0.00 4.20
2427 6441 3.066814 CTGCTTGCTGGCCTTCCC 61.067 66.667 3.32 0.00 0.00 3.97
2428 6442 3.066814 CCTGCTTGCTGGCCTTCC 61.067 66.667 3.32 0.00 0.00 3.46
2429 6443 3.066814 CCCTGCTTGCTGGCCTTC 61.067 66.667 3.32 0.00 0.00 3.46
2430 6444 4.691359 CCCCTGCTTGCTGGCCTT 62.691 66.667 3.32 0.00 0.00 4.35
2445 6459 0.832559 CCCGATCTCCTCTTACCCCC 60.833 65.000 0.00 0.00 0.00 5.40
2446 6460 1.473497 GCCCGATCTCCTCTTACCCC 61.473 65.000 0.00 0.00 0.00 4.95
2447 6461 0.759436 TGCCCGATCTCCTCTTACCC 60.759 60.000 0.00 0.00 0.00 3.69
2448 6462 0.676736 CTGCCCGATCTCCTCTTACC 59.323 60.000 0.00 0.00 0.00 2.85
2449 6463 0.676736 CCTGCCCGATCTCCTCTTAC 59.323 60.000 0.00 0.00 0.00 2.34
2450 6464 1.115930 GCCTGCCCGATCTCCTCTTA 61.116 60.000 0.00 0.00 0.00 2.10
2451 6465 2.439104 GCCTGCCCGATCTCCTCTT 61.439 63.158 0.00 0.00 0.00 2.85
2452 6466 2.841988 GCCTGCCCGATCTCCTCT 60.842 66.667 0.00 0.00 0.00 3.69
2453 6467 3.934962 GGCCTGCCCGATCTCCTC 61.935 72.222 0.00 0.00 0.00 3.71
2454 6468 4.488911 AGGCCTGCCCGATCTCCT 62.489 66.667 3.11 0.00 39.21 3.69
2455 6469 3.934962 GAGGCCTGCCCGATCTCC 61.935 72.222 12.00 0.00 39.21 3.71
2456 6470 2.439104 AAGAGGCCTGCCCGATCTC 61.439 63.158 12.00 0.00 39.21 2.75
2457 6471 2.366167 AAGAGGCCTGCCCGATCT 60.366 61.111 12.00 0.00 39.21 2.75
2458 6472 2.203126 CAAGAGGCCTGCCCGATC 60.203 66.667 12.00 0.00 39.21 3.69
2459 6473 3.801997 CCAAGAGGCCTGCCCGAT 61.802 66.667 12.00 0.00 39.21 4.18
2469 6483 1.677637 GACCTAGTCGGCCCAAGAGG 61.678 65.000 0.00 1.51 35.61 3.69
2470 6484 0.970937 TGACCTAGTCGGCCCAAGAG 60.971 60.000 0.00 0.00 34.95 2.85
2471 6485 0.970937 CTGACCTAGTCGGCCCAAGA 60.971 60.000 0.00 0.00 34.95 3.02
2472 6486 1.517832 CTGACCTAGTCGGCCCAAG 59.482 63.158 0.00 0.00 34.95 3.61
2473 6487 1.987855 CCTGACCTAGTCGGCCCAA 60.988 63.158 0.00 0.00 37.59 4.12
2474 6488 2.363795 CCTGACCTAGTCGGCCCA 60.364 66.667 0.00 0.00 37.59 5.36
2475 6489 3.851128 GCCTGACCTAGTCGGCCC 61.851 72.222 15.24 0.00 42.09 5.80
2477 6491 4.208686 CGGCCTGACCTAGTCGGC 62.209 72.222 16.87 16.87 44.73 5.54
2478 6492 4.208686 GCGGCCTGACCTAGTCGG 62.209 72.222 0.00 0.00 38.54 4.79
2479 6493 3.417275 CTGCGGCCTGACCTAGTCG 62.417 68.421 0.00 0.00 34.95 4.18
2480 6494 2.496817 CTGCGGCCTGACCTAGTC 59.503 66.667 0.00 0.00 35.61 2.59
2481 6495 3.077556 CCTGCGGCCTGACCTAGT 61.078 66.667 0.00 0.00 35.61 2.57
2482 6496 3.077556 ACCTGCGGCCTGACCTAG 61.078 66.667 0.00 0.00 35.61 3.02
2483 6497 3.390521 CACCTGCGGCCTGACCTA 61.391 66.667 0.00 0.00 35.61 3.08
2509 6523 1.372683 CATCCATCCCTGTAGCCCG 59.627 63.158 0.00 0.00 0.00 6.13
2527 6541 1.224870 GAGAAACCCAGCTAGGCCC 59.775 63.158 0.00 0.00 35.39 5.80
2528 6542 1.224870 GGAGAAACCCAGCTAGGCC 59.775 63.158 0.00 0.00 35.39 5.19
2544 6558 5.693769 ATGAGAAATAGAAAACGGAGGGA 57.306 39.130 0.00 0.00 0.00 4.20
2578 6603 7.383102 TCTGTTCATTTCTTTTATCTCCTGC 57.617 36.000 0.00 0.00 0.00 4.85
2581 6606 7.826744 ACTCCTCTGTTCATTTCTTTTATCTCC 59.173 37.037 0.00 0.00 0.00 3.71
2613 6638 0.850100 TTTCTCCCTGCCAAACTCCA 59.150 50.000 0.00 0.00 0.00 3.86
2664 6689 6.378280 AGAATGCTCGAACCATTTTATTTCCT 59.622 34.615 11.05 1.90 33.34 3.36
2666 6691 9.226345 CTAAGAATGCTCGAACCATTTTATTTC 57.774 33.333 11.05 1.23 33.34 2.17
2667 6692 7.702348 GCTAAGAATGCTCGAACCATTTTATTT 59.298 33.333 11.05 7.51 33.34 1.40
2691 6716 4.514441 CCATGAGCGAATCTTAATTCTGCT 59.486 41.667 13.36 13.36 45.58 4.24
2694 6719 6.115446 TCAACCATGAGCGAATCTTAATTCT 58.885 36.000 0.00 0.00 39.36 2.40
2709 6734 7.767659 TGAATGTGTTTTGAAATTCAACCATGA 59.232 29.630 8.06 1.03 35.89 3.07
2729 6754 4.217550 CCCATTTGTAGTCCGTTTGAATGT 59.782 41.667 0.00 0.00 0.00 2.71
2735 6760 3.822940 TCAACCCATTTGTAGTCCGTTT 58.177 40.909 0.00 0.00 36.49 3.60
2740 6765 8.581578 TCCTAAAATTTCAACCCATTTGTAGTC 58.418 33.333 0.00 0.00 36.49 2.59
2761 6786 4.332683 AGTGTGTAGGGTCATCTCCTAA 57.667 45.455 0.00 0.00 38.47 2.69
2791 6816 6.564557 AAATGTTCCAAATCTGCCCATAAT 57.435 33.333 0.00 0.00 0.00 1.28
2844 6869 5.836024 TCTTCCTTTGGAGCCTTTTAGTA 57.164 39.130 0.00 0.00 31.21 1.82
2875 6901 9.142014 TCTTCAATTTCCTTTTTATCCAACTCA 57.858 29.630 0.00 0.00 0.00 3.41
2926 6952 5.008019 CGTAATCCATTCCATTGTCTTGGAG 59.992 44.000 0.00 0.00 46.22 3.86
2933 6959 5.869579 AGCTATCGTAATCCATTCCATTGT 58.130 37.500 0.00 0.00 0.00 2.71
2945 6971 8.822805 TCCCAATATTTAGGAAGCTATCGTAAT 58.177 33.333 2.07 1.99 37.99 1.89
2949 6975 6.109359 CCTCCCAATATTTAGGAAGCTATCG 58.891 44.000 5.66 0.00 0.00 2.92
2950 6976 6.012421 ACCCTCCCAATATTTAGGAAGCTATC 60.012 42.308 9.04 0.00 0.00 2.08
2957 6983 8.766492 ATAACATACCCTCCCAATATTTAGGA 57.234 34.615 9.04 6.77 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.