Multiple sequence alignment - TraesCS4A01G089900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G089900 chr4A 100.000 3691 0 0 1 3691 96273891 96270201 0.000000e+00 6817.0
1 TraesCS4A01G089900 chr4D 93.475 2728 92 24 224 2922 368501565 368504235 0.000000e+00 3973.0
2 TraesCS4A01G089900 chr4B 93.827 2284 86 20 511 2772 453778284 453780534 0.000000e+00 3386.0
3 TraesCS4A01G089900 chr4B 88.000 250 13 4 224 473 453776197 453776429 2.810000e-71 279.0
4 TraesCS4A01G089900 chr4B 92.035 113 9 0 2826 2938 453781272 453781384 3.820000e-35 159.0
5 TraesCS4A01G089900 chr4B 97.436 39 1 0 2765 2803 453780786 453780824 2.380000e-07 67.6
6 TraesCS4A01G089900 chr2D 91.810 757 60 2 2935 3691 340699610 340698856 0.000000e+00 1053.0
7 TraesCS4A01G089900 chr1D 90.206 194 18 1 25 218 379491647 379491455 6.120000e-63 252.0
8 TraesCS4A01G089900 chr1D 91.111 180 13 3 40 218 420567967 420567790 1.320000e-59 241.0
9 TraesCS4A01G089900 chr1D 97.778 45 1 0 1508 1552 375208770 375208814 1.100000e-10 78.7
10 TraesCS4A01G089900 chr7D 89.691 194 19 1 25 218 613505527 613505335 2.850000e-61 246.0
11 TraesCS4A01G089900 chr7D 88.776 196 18 2 26 218 401547205 401547011 1.710000e-58 237.0
12 TraesCS4A01G089900 chr7D 90.503 179 16 1 40 218 574707210 574707387 6.160000e-58 235.0
13 TraesCS4A01G089900 chr7D 88.601 193 21 1 26 218 210122199 210122390 2.220000e-57 233.0
14 TraesCS4A01G089900 chrUn 91.061 179 14 2 40 218 98338570 98338746 1.320000e-59 241.0
15 TraesCS4A01G089900 chr6D 89.175 194 19 2 25 218 256572500 256572309 1.320000e-59 241.0
16 TraesCS4A01G089900 chr6A 88.601 193 20 2 26 218 565571721 565571531 2.220000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G089900 chr4A 96270201 96273891 3690 True 6817.0 6817 100.0000 1 3691 1 chr4A.!!$R1 3690
1 TraesCS4A01G089900 chr4D 368501565 368504235 2670 False 3973.0 3973 93.4750 224 2922 1 chr4D.!!$F1 2698
2 TraesCS4A01G089900 chr4B 453776197 453781384 5187 False 972.9 3386 92.8245 224 2938 4 chr4B.!!$F1 2714
3 TraesCS4A01G089900 chr2D 340698856 340699610 754 True 1053.0 1053 91.8100 2935 3691 1 chr2D.!!$R1 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.0 0.00 0.00 0.0 4.02 F
73 74 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.0 0.00 0.00 0.0 5.68 F
1052 2892 0.165727 GTTGCGTTGCGTGATCATGA 59.834 50.0 19.30 0.00 0.0 3.07 F
1057 2897 0.247419 GTTGCGTGATCATGAGCGTG 60.247 55.0 19.30 2.10 0.0 5.34 F
2616 4473 0.312416 CTGGATCCGATCGACCACTC 59.688 60.0 18.66 5.34 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1057 2897 0.038343 GCTCAGGCTCCGATCAGATC 60.038 60.0 0.00 0.0 35.22 2.75 R
1437 3284 0.241481 GTGGTCGTGACAGTCTCCTC 59.759 60.0 1.31 0.0 0.00 3.71 R
2461 4313 0.248289 CACACCCACCTACCTAACGG 59.752 60.0 0.00 0.0 0.00 4.44 R
2683 4544 0.544223 TGCCAACCACACACACTAGT 59.456 50.0 0.00 0.0 0.00 2.57 R
3600 6145 0.389426 CGTCGGAGGTGGGTAAGTTG 60.389 60.0 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.395702 TCCGTTGCCCCGTATGCT 61.396 61.111 0.00 0.00 0.00 3.79
18 19 2.437716 CCGTTGCCCCGTATGCTT 60.438 61.111 0.00 0.00 0.00 3.91
19 20 2.043980 CCGTTGCCCCGTATGCTTT 61.044 57.895 0.00 0.00 0.00 3.51
20 21 1.136565 CGTTGCCCCGTATGCTTTG 59.863 57.895 0.00 0.00 0.00 2.77
21 22 1.582610 CGTTGCCCCGTATGCTTTGT 61.583 55.000 0.00 0.00 0.00 2.83
22 23 0.601057 GTTGCCCCGTATGCTTTGTT 59.399 50.000 0.00 0.00 0.00 2.83
23 24 1.000394 GTTGCCCCGTATGCTTTGTTT 60.000 47.619 0.00 0.00 0.00 2.83
24 25 0.600557 TGCCCCGTATGCTTTGTTTG 59.399 50.000 0.00 0.00 0.00 2.93
25 26 0.108851 GCCCCGTATGCTTTGTTTGG 60.109 55.000 0.00 0.00 0.00 3.28
26 27 0.530288 CCCCGTATGCTTTGTTTGGG 59.470 55.000 0.00 0.00 34.87 4.12
27 28 1.540267 CCCGTATGCTTTGTTTGGGA 58.460 50.000 0.00 0.00 37.35 4.37
28 29 2.099405 CCCGTATGCTTTGTTTGGGAT 58.901 47.619 0.00 0.00 37.35 3.85
29 30 2.099098 CCCGTATGCTTTGTTTGGGATC 59.901 50.000 0.00 0.00 37.35 3.36
30 31 2.099098 CCGTATGCTTTGTTTGGGATCC 59.901 50.000 1.92 1.92 0.00 3.36
31 32 2.752354 CGTATGCTTTGTTTGGGATCCA 59.248 45.455 15.23 0.00 0.00 3.41
32 33 3.181497 CGTATGCTTTGTTTGGGATCCAG 60.181 47.826 15.23 0.94 33.81 3.86
33 34 2.380064 TGCTTTGTTTGGGATCCAGT 57.620 45.000 15.23 0.00 33.81 4.00
34 35 2.676748 TGCTTTGTTTGGGATCCAGTT 58.323 42.857 15.23 0.00 33.81 3.16
35 36 3.037549 TGCTTTGTTTGGGATCCAGTTT 58.962 40.909 15.23 0.00 33.81 2.66
36 37 3.181467 TGCTTTGTTTGGGATCCAGTTTG 60.181 43.478 15.23 0.00 33.81 2.93
37 38 3.069443 GCTTTGTTTGGGATCCAGTTTGA 59.931 43.478 15.23 0.00 33.81 2.69
38 39 4.620982 CTTTGTTTGGGATCCAGTTTGAC 58.379 43.478 15.23 3.73 33.81 3.18
39 40 3.593442 TGTTTGGGATCCAGTTTGACT 57.407 42.857 15.23 0.00 33.81 3.41
40 41 3.221771 TGTTTGGGATCCAGTTTGACTG 58.778 45.455 15.23 1.14 45.53 3.51
41 42 1.909700 TTGGGATCCAGTTTGACTGC 58.090 50.000 15.23 0.00 44.63 4.40
42 43 1.067295 TGGGATCCAGTTTGACTGCT 58.933 50.000 15.23 0.00 44.63 4.24
43 44 1.003580 TGGGATCCAGTTTGACTGCTC 59.996 52.381 15.23 2.38 44.63 4.26
44 45 1.680249 GGGATCCAGTTTGACTGCTCC 60.680 57.143 15.23 14.56 44.63 4.70
45 46 1.680249 GGATCCAGTTTGACTGCTCCC 60.680 57.143 6.95 6.12 44.63 4.30
46 47 1.280421 GATCCAGTTTGACTGCTCCCT 59.720 52.381 2.59 0.00 44.63 4.20
47 48 0.687354 TCCAGTTTGACTGCTCCCTC 59.313 55.000 2.59 0.00 44.63 4.30
48 49 0.689623 CCAGTTTGACTGCTCCCTCT 59.310 55.000 2.59 0.00 44.63 3.69
49 50 1.338579 CCAGTTTGACTGCTCCCTCTC 60.339 57.143 2.59 0.00 44.63 3.20
50 51 0.980423 AGTTTGACTGCTCCCTCTCC 59.020 55.000 0.00 0.00 0.00 3.71
51 52 0.687354 GTTTGACTGCTCCCTCTCCA 59.313 55.000 0.00 0.00 0.00 3.86
52 53 1.280421 GTTTGACTGCTCCCTCTCCAT 59.720 52.381 0.00 0.00 0.00 3.41
53 54 0.907486 TTGACTGCTCCCTCTCCATG 59.093 55.000 0.00 0.00 0.00 3.66
54 55 1.145819 GACTGCTCCCTCTCCATGC 59.854 63.158 0.00 0.00 0.00 4.06
55 56 1.306825 ACTGCTCCCTCTCCATGCT 60.307 57.895 0.00 0.00 0.00 3.79
56 57 1.336632 ACTGCTCCCTCTCCATGCTC 61.337 60.000 0.00 0.00 0.00 4.26
57 58 2.042404 CTGCTCCCTCTCCATGCTCC 62.042 65.000 0.00 0.00 0.00 4.70
58 59 2.817056 GCTCCCTCTCCATGCTCCC 61.817 68.421 0.00 0.00 0.00 4.30
59 60 1.383664 CTCCCTCTCCATGCTCCCA 60.384 63.158 0.00 0.00 0.00 4.37
60 61 1.690633 TCCCTCTCCATGCTCCCAC 60.691 63.158 0.00 0.00 0.00 4.61
61 62 1.692042 CCCTCTCCATGCTCCCACT 60.692 63.158 0.00 0.00 0.00 4.00
62 63 1.277580 CCCTCTCCATGCTCCCACTT 61.278 60.000 0.00 0.00 0.00 3.16
63 64 0.179936 CCTCTCCATGCTCCCACTTC 59.820 60.000 0.00 0.00 0.00 3.01
64 65 0.907486 CTCTCCATGCTCCCACTTCA 59.093 55.000 0.00 0.00 0.00 3.02
65 66 1.489649 CTCTCCATGCTCCCACTTCAT 59.510 52.381 0.00 0.00 0.00 2.57
66 67 1.487976 TCTCCATGCTCCCACTTCATC 59.512 52.381 0.00 0.00 0.00 2.92
67 68 0.548031 TCCATGCTCCCACTTCATCC 59.452 55.000 0.00 0.00 0.00 3.51
68 69 0.549950 CCATGCTCCCACTTCATCCT 59.450 55.000 0.00 0.00 0.00 3.24
69 70 1.770658 CCATGCTCCCACTTCATCCTA 59.229 52.381 0.00 0.00 0.00 2.94
70 71 2.486191 CCATGCTCCCACTTCATCCTAC 60.486 54.545 0.00 0.00 0.00 3.18
71 72 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
72 73 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
73 74 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
74 75 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
75 76 1.063492 TCCCACTTCATCCTACGGCTA 60.063 52.381 0.00 0.00 0.00 3.93
76 77 1.068741 CCCACTTCATCCTACGGCTAC 59.931 57.143 0.00 0.00 0.00 3.58
77 78 2.032620 CCACTTCATCCTACGGCTACT 58.967 52.381 0.00 0.00 0.00 2.57
78 79 2.034812 CCACTTCATCCTACGGCTACTC 59.965 54.545 0.00 0.00 0.00 2.59
79 80 2.952978 CACTTCATCCTACGGCTACTCT 59.047 50.000 0.00 0.00 0.00 3.24
80 81 3.381908 CACTTCATCCTACGGCTACTCTT 59.618 47.826 0.00 0.00 0.00 2.85
81 82 4.024670 ACTTCATCCTACGGCTACTCTTT 58.975 43.478 0.00 0.00 0.00 2.52
82 83 4.466726 ACTTCATCCTACGGCTACTCTTTT 59.533 41.667 0.00 0.00 0.00 2.27
83 84 4.650754 TCATCCTACGGCTACTCTTTTC 57.349 45.455 0.00 0.00 0.00 2.29
84 85 3.383825 TCATCCTACGGCTACTCTTTTCC 59.616 47.826 0.00 0.00 0.00 3.13
85 86 2.105766 TCCTACGGCTACTCTTTTCCC 58.894 52.381 0.00 0.00 0.00 3.97
86 87 2.108970 CCTACGGCTACTCTTTTCCCT 58.891 52.381 0.00 0.00 0.00 4.20
87 88 2.500504 CCTACGGCTACTCTTTTCCCTT 59.499 50.000 0.00 0.00 0.00 3.95
88 89 3.055312 CCTACGGCTACTCTTTTCCCTTT 60.055 47.826 0.00 0.00 0.00 3.11
89 90 3.503800 ACGGCTACTCTTTTCCCTTTT 57.496 42.857 0.00 0.00 0.00 2.27
90 91 3.828921 ACGGCTACTCTTTTCCCTTTTT 58.171 40.909 0.00 0.00 0.00 1.94
91 92 3.819337 ACGGCTACTCTTTTCCCTTTTTC 59.181 43.478 0.00 0.00 0.00 2.29
92 93 4.072839 CGGCTACTCTTTTCCCTTTTTCT 58.927 43.478 0.00 0.00 0.00 2.52
93 94 4.519350 CGGCTACTCTTTTCCCTTTTTCTT 59.481 41.667 0.00 0.00 0.00 2.52
94 95 5.009710 CGGCTACTCTTTTCCCTTTTTCTTT 59.990 40.000 0.00 0.00 0.00 2.52
95 96 6.461092 CGGCTACTCTTTTCCCTTTTTCTTTT 60.461 38.462 0.00 0.00 0.00 2.27
96 97 7.272978 GGCTACTCTTTTCCCTTTTTCTTTTT 58.727 34.615 0.00 0.00 0.00 1.94
116 117 6.570654 TTTTTAATCTAATCGTCTCCCCCT 57.429 37.500 0.00 0.00 0.00 4.79
117 118 5.803237 TTTAATCTAATCGTCTCCCCCTC 57.197 43.478 0.00 0.00 0.00 4.30
118 119 3.621682 AATCTAATCGTCTCCCCCTCT 57.378 47.619 0.00 0.00 0.00 3.69
119 120 2.366640 TCTAATCGTCTCCCCCTCTG 57.633 55.000 0.00 0.00 0.00 3.35
120 121 1.850998 TCTAATCGTCTCCCCCTCTGA 59.149 52.381 0.00 0.00 0.00 3.27
121 122 2.447429 TCTAATCGTCTCCCCCTCTGAT 59.553 50.000 0.00 0.00 0.00 2.90
122 123 2.182516 AATCGTCTCCCCCTCTGATT 57.817 50.000 0.00 0.00 0.00 2.57
123 124 2.182516 ATCGTCTCCCCCTCTGATTT 57.817 50.000 0.00 0.00 0.00 2.17
124 125 1.952621 TCGTCTCCCCCTCTGATTTT 58.047 50.000 0.00 0.00 0.00 1.82
125 126 1.831736 TCGTCTCCCCCTCTGATTTTC 59.168 52.381 0.00 0.00 0.00 2.29
126 127 1.555075 CGTCTCCCCCTCTGATTTTCA 59.445 52.381 0.00 0.00 0.00 2.69
127 128 2.027192 CGTCTCCCCCTCTGATTTTCAA 60.027 50.000 0.00 0.00 0.00 2.69
128 129 3.559171 CGTCTCCCCCTCTGATTTTCAAA 60.559 47.826 0.00 0.00 0.00 2.69
129 130 4.013050 GTCTCCCCCTCTGATTTTCAAAG 58.987 47.826 0.00 0.00 0.00 2.77
130 131 3.010584 TCTCCCCCTCTGATTTTCAAAGG 59.989 47.826 0.00 0.00 0.00 3.11
131 132 2.993146 TCCCCCTCTGATTTTCAAAGGA 59.007 45.455 0.00 0.00 0.00 3.36
132 133 3.597868 TCCCCCTCTGATTTTCAAAGGAT 59.402 43.478 0.00 0.00 0.00 3.24
133 134 3.703052 CCCCCTCTGATTTTCAAAGGATG 59.297 47.826 0.00 0.00 0.00 3.51
134 135 3.703052 CCCCTCTGATTTTCAAAGGATGG 59.297 47.826 0.00 0.00 0.00 3.51
135 136 3.703052 CCCTCTGATTTTCAAAGGATGGG 59.297 47.826 0.00 0.00 0.00 4.00
136 137 3.703052 CCTCTGATTTTCAAAGGATGGGG 59.297 47.826 0.00 0.00 0.00 4.96
137 138 3.099141 TCTGATTTTCAAAGGATGGGGC 58.901 45.455 0.00 0.00 0.00 5.80
138 139 2.169144 CTGATTTTCAAAGGATGGGGCC 59.831 50.000 0.00 0.00 0.00 5.80
139 140 1.136891 GATTTTCAAAGGATGGGGCCG 59.863 52.381 0.00 0.00 0.00 6.13
140 141 0.902516 TTTTCAAAGGATGGGGCCGG 60.903 55.000 0.00 0.00 0.00 6.13
141 142 2.796734 TTTCAAAGGATGGGGCCGGG 62.797 60.000 2.18 0.00 0.00 5.73
152 153 4.678423 GGCCGGGCCTTATTTTCT 57.322 55.556 30.86 0.00 46.69 2.52
153 154 2.896278 GGCCGGGCCTTATTTTCTT 58.104 52.632 30.86 0.00 46.69 2.52
154 155 1.191535 GGCCGGGCCTTATTTTCTTT 58.808 50.000 30.86 0.00 46.69 2.52
155 156 1.136305 GGCCGGGCCTTATTTTCTTTC 59.864 52.381 30.86 0.00 46.69 2.62
156 157 1.822371 GCCGGGCCTTATTTTCTTTCA 59.178 47.619 8.12 0.00 0.00 2.69
157 158 2.232696 GCCGGGCCTTATTTTCTTTCAA 59.767 45.455 8.12 0.00 0.00 2.69
158 159 3.118775 GCCGGGCCTTATTTTCTTTCAAT 60.119 43.478 8.12 0.00 0.00 2.57
159 160 4.682787 CCGGGCCTTATTTTCTTTCAATC 58.317 43.478 0.84 0.00 0.00 2.67
160 161 4.159506 CCGGGCCTTATTTTCTTTCAATCA 59.840 41.667 0.84 0.00 0.00 2.57
161 162 5.337169 CCGGGCCTTATTTTCTTTCAATCAA 60.337 40.000 0.84 0.00 0.00 2.57
162 163 6.162777 CGGGCCTTATTTTCTTTCAATCAAA 58.837 36.000 0.84 0.00 0.00 2.69
163 164 6.818142 CGGGCCTTATTTTCTTTCAATCAAAT 59.182 34.615 0.84 0.00 0.00 2.32
164 165 7.010460 CGGGCCTTATTTTCTTTCAATCAAATC 59.990 37.037 0.84 0.00 0.00 2.17
165 166 7.823799 GGGCCTTATTTTCTTTCAATCAAATCA 59.176 33.333 0.84 0.00 0.00 2.57
166 167 9.218440 GGCCTTATTTTCTTTCAATCAAATCAA 57.782 29.630 0.00 0.00 0.00 2.57
170 171 9.775854 TTATTTTCTTTCAATCAAATCAAGCCA 57.224 25.926 0.00 0.00 0.00 4.75
171 172 7.481275 TTTTCTTTCAATCAAATCAAGCCAC 57.519 32.000 0.00 0.00 0.00 5.01
172 173 4.797471 TCTTTCAATCAAATCAAGCCACG 58.203 39.130 0.00 0.00 0.00 4.94
173 174 4.278170 TCTTTCAATCAAATCAAGCCACGT 59.722 37.500 0.00 0.00 0.00 4.49
174 175 5.471797 TCTTTCAATCAAATCAAGCCACGTA 59.528 36.000 0.00 0.00 0.00 3.57
175 176 5.895636 TTCAATCAAATCAAGCCACGTAT 57.104 34.783 0.00 0.00 0.00 3.06
176 177 5.233957 TCAATCAAATCAAGCCACGTATG 57.766 39.130 0.00 0.00 0.00 2.39
177 178 3.698029 ATCAAATCAAGCCACGTATGC 57.302 42.857 1.17 1.17 0.00 3.14
178 179 1.396648 TCAAATCAAGCCACGTATGCG 59.603 47.619 0.19 0.19 44.93 4.73
179 180 0.732571 AAATCAAGCCACGTATGCGG 59.267 50.000 8.39 0.00 43.45 5.69
180 181 1.095228 AATCAAGCCACGTATGCGGG 61.095 55.000 8.39 2.48 43.45 6.13
181 182 1.966901 ATCAAGCCACGTATGCGGGA 61.967 55.000 7.15 6.11 45.97 5.14
182 183 2.173669 CAAGCCACGTATGCGGGAG 61.174 63.158 7.15 0.00 45.97 4.30
196 197 2.245159 CGGGAGCATGAATAGAAGCA 57.755 50.000 0.00 0.00 0.00 3.91
197 198 2.775890 CGGGAGCATGAATAGAAGCAT 58.224 47.619 0.00 0.00 0.00 3.79
198 199 2.483106 CGGGAGCATGAATAGAAGCATG 59.517 50.000 0.00 0.00 43.56 4.06
199 200 2.818432 GGGAGCATGAATAGAAGCATGG 59.182 50.000 0.00 0.00 41.58 3.66
200 201 3.497405 GGGAGCATGAATAGAAGCATGGA 60.497 47.826 0.00 0.00 41.58 3.41
201 202 4.139786 GGAGCATGAATAGAAGCATGGAA 58.860 43.478 0.00 0.00 41.58 3.53
202 203 4.581824 GGAGCATGAATAGAAGCATGGAAA 59.418 41.667 0.00 0.00 41.58 3.13
203 204 5.278364 GGAGCATGAATAGAAGCATGGAAAG 60.278 44.000 0.00 0.00 41.58 2.62
204 205 4.583489 AGCATGAATAGAAGCATGGAAAGG 59.417 41.667 0.00 0.00 41.58 3.11
205 206 4.261909 GCATGAATAGAAGCATGGAAAGGG 60.262 45.833 0.00 0.00 41.58 3.95
206 207 4.860802 TGAATAGAAGCATGGAAAGGGA 57.139 40.909 0.00 0.00 0.00 4.20
207 208 4.785301 TGAATAGAAGCATGGAAAGGGAG 58.215 43.478 0.00 0.00 0.00 4.30
208 209 2.717639 TAGAAGCATGGAAAGGGAGC 57.282 50.000 0.00 0.00 0.00 4.70
209 210 0.700564 AGAAGCATGGAAAGGGAGCA 59.299 50.000 0.00 0.00 0.00 4.26
210 211 1.101331 GAAGCATGGAAAGGGAGCAG 58.899 55.000 0.00 0.00 0.00 4.24
211 212 0.324091 AAGCATGGAAAGGGAGCAGG 60.324 55.000 0.00 0.00 0.00 4.85
212 213 2.421399 GCATGGAAAGGGAGCAGGC 61.421 63.158 0.00 0.00 0.00 4.85
213 214 1.000521 CATGGAAAGGGAGCAGGCA 60.001 57.895 0.00 0.00 0.00 4.75
214 215 0.612732 CATGGAAAGGGAGCAGGCAA 60.613 55.000 0.00 0.00 0.00 4.52
215 216 0.324091 ATGGAAAGGGAGCAGGCAAG 60.324 55.000 0.00 0.00 0.00 4.01
216 217 1.075659 GGAAAGGGAGCAGGCAAGT 59.924 57.895 0.00 0.00 0.00 3.16
217 218 0.962855 GGAAAGGGAGCAGGCAAGTC 60.963 60.000 0.00 0.00 0.00 3.01
218 219 0.962855 GAAAGGGAGCAGGCAAGTCC 60.963 60.000 0.00 0.00 0.00 3.85
220 221 4.432741 GGGAGCAGGCAAGTCCCC 62.433 72.222 5.92 0.00 43.91 4.81
221 222 4.432741 GGAGCAGGCAAGTCCCCC 62.433 72.222 0.00 0.00 34.51 5.40
328 334 6.930667 TGGGTATTATTTTTCTAACCTCGC 57.069 37.500 0.00 0.00 0.00 5.03
331 337 6.204301 GGGTATTATTTTTCTAACCTCGCCTC 59.796 42.308 0.00 0.00 0.00 4.70
434 440 3.075641 GGAGGAGACACCGGGACC 61.076 72.222 6.32 1.15 44.74 4.46
435 441 3.450115 GAGGAGACACCGGGACCG 61.450 72.222 6.32 3.25 44.74 4.79
445 451 2.758327 CGGGACCGGATCACAGGA 60.758 66.667 9.46 0.00 35.41 3.86
465 471 1.832219 CCCAGATCAGGCCGATGAA 59.168 57.895 13.68 0.00 33.17 2.57
480 486 4.129380 CCGATGAACAATGATAGCTCCAA 58.871 43.478 0.00 0.00 0.00 3.53
482 488 4.318333 CGATGAACAATGATAGCTCCAACG 60.318 45.833 0.00 0.00 0.00 4.10
493 2324 1.012486 GCTCCAACGGAACCTACACG 61.012 60.000 0.00 0.00 0.00 4.49
505 2336 2.244695 ACCTACACGACACATCTCCAA 58.755 47.619 0.00 0.00 0.00 3.53
509 2345 0.647410 CACGACACATCTCCAATCGC 59.353 55.000 0.00 0.00 36.26 4.58
528 2364 2.910479 TCCAGTGCACCGACGACT 60.910 61.111 14.63 0.00 0.00 4.18
543 2379 2.614520 GACGACTCCGATCTGATCTGAA 59.385 50.000 15.16 0.63 39.50 3.02
544 2380 3.218453 ACGACTCCGATCTGATCTGAAT 58.782 45.455 15.16 4.49 39.50 2.57
545 2381 3.252215 ACGACTCCGATCTGATCTGAATC 59.748 47.826 15.16 12.13 39.50 2.52
587 2427 1.650536 GTCGATCGGTAGCACGTCG 60.651 63.158 16.41 0.00 38.10 5.12
651 2491 1.270518 CCATCTCCCCGCTGTAATGAG 60.271 57.143 0.00 0.00 0.00 2.90
656 2496 1.168407 CCCCGCTGTAATGAGGCATG 61.168 60.000 0.00 0.00 0.00 4.06
711 2551 2.045926 GGGCGAGCACCATCACTT 60.046 61.111 0.00 0.00 0.00 3.16
726 2566 2.039418 TCACTTGTACCAGCTCAGTGT 58.961 47.619 0.00 0.00 0.00 3.55
801 2641 3.311486 GCATCTGCATCCTAGGTACTC 57.689 52.381 9.08 0.00 39.84 2.59
802 2642 2.028567 GCATCTGCATCCTAGGTACTCC 60.029 54.545 9.08 0.00 39.84 3.85
818 2658 5.194132 AGGTACTCCACTACTCCAGTAATCT 59.806 44.000 0.00 0.00 34.98 2.40
920 2760 0.607762 AACACAGCCACACACACACA 60.608 50.000 0.00 0.00 0.00 3.72
921 2761 1.305219 ACACAGCCACACACACACAC 61.305 55.000 0.00 0.00 0.00 3.82
1052 2892 0.165727 GTTGCGTTGCGTGATCATGA 59.834 50.000 19.30 0.00 0.00 3.07
1053 2893 0.443478 TTGCGTTGCGTGATCATGAG 59.557 50.000 19.30 5.33 0.00 2.90
1054 2894 1.297158 GCGTTGCGTGATCATGAGC 60.297 57.895 19.30 15.17 0.00 4.26
1055 2895 1.012998 CGTTGCGTGATCATGAGCG 60.013 57.895 19.30 13.96 0.00 5.03
1056 2896 1.686566 CGTTGCGTGATCATGAGCGT 61.687 55.000 19.30 0.00 0.00 5.07
1057 2897 0.247419 GTTGCGTGATCATGAGCGTG 60.247 55.000 19.30 2.10 0.00 5.34
1073 2913 0.318529 CGTGATCTGATCGGAGCCTG 60.319 60.000 16.93 5.72 0.00 4.85
1164 3005 2.766313 TCTTTGTCATGTTCCTCCACG 58.234 47.619 0.00 0.00 0.00 4.94
1220 3061 4.426112 TCGCAGCAGCACGAGGAG 62.426 66.667 6.45 0.00 42.27 3.69
1229 3070 3.432588 CACGAGGAGGACGACGCT 61.433 66.667 0.00 0.00 34.70 5.07
1367 3214 3.691744 CTCGTCTCTCGCCACCAGC 62.692 68.421 0.00 0.00 39.67 4.85
1402 3249 2.419198 CCGCATCTTCTCCTCCGG 59.581 66.667 0.00 0.00 0.00 5.14
1403 3250 2.427245 CCGCATCTTCTCCTCCGGT 61.427 63.158 0.00 0.00 0.00 5.28
1406 3253 1.330655 GCATCTTCTCCTCCGGTGGA 61.331 60.000 23.40 23.40 34.52 4.02
1408 3255 0.688087 ATCTTCTCCTCCGGTGGACC 60.688 60.000 21.30 0.00 31.94 4.46
1416 3263 0.392998 CTCCGGTGGACCCAAGAATG 60.393 60.000 0.00 0.00 0.00 2.67
1424 3271 1.177401 GACCCAAGAATGCTGTTCCC 58.823 55.000 0.00 0.00 0.00 3.97
1426 3273 1.508088 CCAAGAATGCTGTTCCCGC 59.492 57.895 0.00 0.00 0.00 6.13
1443 3290 3.063197 GCCGGAGAGGAGGAGGAGA 62.063 68.421 5.05 0.00 45.00 3.71
1444 3291 1.152839 CCGGAGAGGAGGAGGAGAC 60.153 68.421 0.00 0.00 45.00 3.36
1445 3292 1.641552 CCGGAGAGGAGGAGGAGACT 61.642 65.000 0.00 0.00 44.75 3.24
1458 3308 1.081376 GAGACTGTCACGACCACCG 60.081 63.158 10.88 0.00 45.44 4.94
1559 3409 1.605058 CGTTCCTGTCCCCGATGTCT 61.605 60.000 0.00 0.00 0.00 3.41
1568 3418 2.278206 CCGATGTCTCCGCAGTCG 60.278 66.667 0.00 0.00 0.00 4.18
1727 3577 1.817099 GGCGATGAAGCACTCCCTG 60.817 63.158 0.00 0.00 39.27 4.45
1862 3712 4.715523 ATCCACCACAACCCGCGG 62.716 66.667 21.04 21.04 0.00 6.46
2066 3916 3.402681 ACCTGCACCATCCTCCGG 61.403 66.667 0.00 0.00 0.00 5.14
2461 4313 1.149148 GCTTGTCCCGTCAACTTCTC 58.851 55.000 0.00 0.00 0.00 2.87
2616 4473 0.312416 CTGGATCCGATCGACCACTC 59.688 60.000 18.66 5.34 0.00 3.51
2635 4496 1.805539 CACCATGATGTCGCGTCGT 60.806 57.895 5.77 0.40 0.00 4.34
2646 4507 1.803922 CGCGTCGTGTCTGCCATTA 60.804 57.895 0.00 0.00 0.00 1.90
2673 4534 2.725644 GTATGCTCATACGCGCGAT 58.274 52.632 39.36 22.17 34.95 4.58
2674 4535 1.891178 GTATGCTCATACGCGCGATA 58.109 50.000 39.36 24.25 34.95 2.92
2675 4536 2.247637 GTATGCTCATACGCGCGATAA 58.752 47.619 39.36 21.49 34.95 1.75
2676 4537 1.778334 ATGCTCATACGCGCGATAAA 58.222 45.000 39.36 18.75 0.00 1.40
2677 4538 1.778334 TGCTCATACGCGCGATAAAT 58.222 45.000 39.36 20.19 0.00 1.40
2679 4540 3.310246 TGCTCATACGCGCGATAAATTA 58.690 40.909 39.36 17.98 0.00 1.40
2680 4541 3.924073 TGCTCATACGCGCGATAAATTAT 59.076 39.130 39.36 19.57 0.00 1.28
2681 4542 4.201580 TGCTCATACGCGCGATAAATTATG 60.202 41.667 39.36 29.07 0.00 1.90
2682 4543 4.201589 GCTCATACGCGCGATAAATTATGT 60.202 41.667 39.36 12.61 0.00 2.29
2683 4544 5.004061 GCTCATACGCGCGATAAATTATGTA 59.996 40.000 39.36 14.67 0.00 2.29
2684 4545 6.308710 TCATACGCGCGATAAATTATGTAC 57.691 37.500 39.36 0.00 0.00 2.90
2766 4627 3.988517 GTGTCAACTGAACTACTAGTGGC 59.011 47.826 5.39 0.00 0.00 5.01
2803 4923 3.929610 CCTTTGTCATCTCTTCTCGTTCC 59.070 47.826 0.00 0.00 0.00 3.62
2834 5379 1.001406 GTTCATATCTCCTCCTGGCGG 59.999 57.143 0.00 0.00 0.00 6.13
2847 5392 2.126228 GGCGGTCGATTGACGTGA 60.126 61.111 7.01 0.00 46.49 4.35
2854 5399 1.654105 GTCGATTGACGTGATGTGGAC 59.346 52.381 0.00 0.00 43.13 4.02
2878 5423 5.897377 ATTTGGGTTAGTGAATTCCTTCG 57.103 39.130 2.27 0.00 33.86 3.79
2895 5440 0.881118 TCGGTCATGAAAGCAAAGCC 59.119 50.000 0.00 0.00 0.00 4.35
2927 5472 1.933853 CGCCAAGGCATGTAAGTAGTC 59.066 52.381 12.19 0.00 42.06 2.59
2949 5494 1.340889 TGTTGTTGGGCATCTTTGAGC 59.659 47.619 0.00 0.00 0.00 4.26
2966 5511 2.644992 CCGTTGGCAAACAGAGGC 59.355 61.111 0.00 0.00 35.94 4.70
2977 5522 2.108566 CAGAGGCCTCCATCAGCG 59.891 66.667 29.54 5.48 0.00 5.18
2991 5536 1.775385 TCAGCGGATGTCCATCTACA 58.225 50.000 7.19 0.00 37.92 2.74
2996 5541 1.613925 CGGATGTCCATCTACACGGAT 59.386 52.381 7.19 0.00 37.92 4.18
3025 5570 2.297033 TGCTTTTCATCAAACCCAGAGC 59.703 45.455 0.00 0.00 0.00 4.09
3071 5616 2.137177 TTTTGGAGGCCTTCGGGGAG 62.137 60.000 6.77 0.00 37.23 4.30
3147 5692 0.609957 CTTGGAGCAAGTGGCCATGA 60.610 55.000 9.72 0.00 46.50 3.07
3151 5696 0.890542 GAGCAAGTGGCCATGACACA 60.891 55.000 9.72 2.29 45.35 3.72
3155 5700 2.165167 CAAGTGGCCATGACACAGAAT 58.835 47.619 9.72 3.89 45.35 2.40
3161 5706 2.536365 GCCATGACACAGAATGCATTG 58.464 47.619 18.59 6.76 42.53 2.82
3162 5707 2.737359 GCCATGACACAGAATGCATTGG 60.737 50.000 18.59 10.30 42.53 3.16
3182 5727 3.272334 GTGCACGATCGGCCCATC 61.272 66.667 20.98 0.00 0.00 3.51
3185 5730 3.860605 CACGATCGGCCCATCCCA 61.861 66.667 20.98 0.00 0.00 4.37
3195 5740 0.106519 GCCCATCCCAGTGCAAGTAT 60.107 55.000 0.00 0.00 0.00 2.12
3202 5747 1.202698 CCCAGTGCAAGTATCTAGGGC 60.203 57.143 0.00 0.00 0.00 5.19
3211 5756 1.203125 AGTATCTAGGGCTGCCTCTCC 60.203 57.143 19.68 1.03 0.00 3.71
3218 5763 2.203126 GCTGCCTCTCCCCATTCG 60.203 66.667 0.00 0.00 0.00 3.34
3227 5772 0.107703 CTCCCCATTCGCAAGCAGTA 60.108 55.000 0.00 0.00 37.18 2.74
3272 5817 2.306847 AGACCAACTCGCCAACAAATT 58.693 42.857 0.00 0.00 0.00 1.82
3273 5818 2.034558 AGACCAACTCGCCAACAAATTG 59.965 45.455 0.00 0.00 35.40 2.32
3375 5920 2.777114 TGCTCTAATGGCCATGGAACTA 59.223 45.455 21.63 6.44 0.00 2.24
3376 5921 3.142174 GCTCTAATGGCCATGGAACTAC 58.858 50.000 21.63 2.19 0.00 2.73
3377 5922 3.744660 CTCTAATGGCCATGGAACTACC 58.255 50.000 21.63 7.22 39.54 3.18
3386 5931 2.368875 CCATGGAACTACCGGCTAAGAT 59.631 50.000 5.56 0.00 42.61 2.40
3390 5935 3.132289 TGGAACTACCGGCTAAGATTCTG 59.868 47.826 0.00 0.00 42.61 3.02
3405 5950 4.482990 AGATTCTGAAGGCCTTGGAAAAA 58.517 39.130 26.25 10.12 0.00 1.94
3406 5951 5.089434 AGATTCTGAAGGCCTTGGAAAAAT 58.911 37.500 26.25 14.45 0.00 1.82
3416 5961 5.838521 AGGCCTTGGAAAAATTTTGTAGAGA 59.161 36.000 0.00 0.00 0.00 3.10
3421 5966 8.413229 CCTTGGAAAAATTTTGTAGAGACTTCA 58.587 33.333 3.73 0.00 0.00 3.02
3430 5975 2.632512 TGTAGAGACTTCATGTGGTGCA 59.367 45.455 0.00 0.00 0.00 4.57
3459 6004 0.696501 AGGCCAACGGAGGTAAATGT 59.303 50.000 5.01 0.00 0.00 2.71
3463 6008 2.690786 CCAACGGAGGTAAATGTTCGA 58.309 47.619 0.00 0.00 0.00 3.71
3536 6081 2.128035 GAATCTACGGTGGCTCAATCG 58.872 52.381 0.00 0.00 0.00 3.34
3556 6101 2.754995 GCTTTGCTAGCTCGGTGGC 61.755 63.158 17.23 7.93 46.77 5.01
3600 6145 5.163416 CCAACAATAACCATGGAGGGAATTC 60.163 44.000 21.47 0.00 43.89 2.17
3601 6146 5.205517 ACAATAACCATGGAGGGAATTCA 57.794 39.130 21.47 0.00 43.89 2.57
3605 6150 3.833559 ACCATGGAGGGAATTCAACTT 57.166 42.857 21.47 0.00 43.89 2.66
3617 6162 1.719529 TTCAACTTACCCACCTCCGA 58.280 50.000 0.00 0.00 0.00 4.55
3651 6196 4.177026 CCATATATCAGGCTGCTACGTTC 58.823 47.826 10.34 0.00 0.00 3.95
3668 6213 0.893270 TTCGTGGATGTTGGCAAGGG 60.893 55.000 0.00 0.00 0.00 3.95
3672 6217 2.409870 GGATGTTGGCAAGGGCGAG 61.410 63.158 0.00 0.00 42.47 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.472414 AAAGCATACGGGGCAACGGA 62.472 55.000 5.83 0.00 38.39 4.69
1 2 2.043980 AAAGCATACGGGGCAACGG 61.044 57.895 5.83 0.00 38.39 4.44
2 3 1.136565 CAAAGCATACGGGGCAACG 59.863 57.895 0.00 0.00 40.31 4.10
3 4 0.601057 AACAAAGCATACGGGGCAAC 59.399 50.000 0.00 0.00 0.00 4.17
4 5 1.000283 CAAACAAAGCATACGGGGCAA 60.000 47.619 0.00 0.00 0.00 4.52
5 6 0.600557 CAAACAAAGCATACGGGGCA 59.399 50.000 0.00 0.00 0.00 5.36
6 7 0.108851 CCAAACAAAGCATACGGGGC 60.109 55.000 0.00 0.00 0.00 5.80
7 8 0.530288 CCCAAACAAAGCATACGGGG 59.470 55.000 0.00 0.00 0.00 5.73
8 9 1.540267 TCCCAAACAAAGCATACGGG 58.460 50.000 0.00 0.00 0.00 5.28
9 10 2.099098 GGATCCCAAACAAAGCATACGG 59.901 50.000 0.00 0.00 0.00 4.02
10 11 2.752354 TGGATCCCAAACAAAGCATACG 59.248 45.455 9.90 0.00 0.00 3.06
11 12 3.763897 ACTGGATCCCAAACAAAGCATAC 59.236 43.478 9.90 0.00 30.80 2.39
12 13 4.046286 ACTGGATCCCAAACAAAGCATA 57.954 40.909 9.90 0.00 30.80 3.14
13 14 2.893424 ACTGGATCCCAAACAAAGCAT 58.107 42.857 9.90 0.00 30.80 3.79
14 15 2.380064 ACTGGATCCCAAACAAAGCA 57.620 45.000 9.90 0.00 30.80 3.91
15 16 3.069443 TCAAACTGGATCCCAAACAAAGC 59.931 43.478 9.90 0.00 30.80 3.51
16 17 4.342092 AGTCAAACTGGATCCCAAACAAAG 59.658 41.667 9.90 0.00 30.80 2.77
17 18 4.099266 CAGTCAAACTGGATCCCAAACAAA 59.901 41.667 9.90 0.00 42.35 2.83
18 19 3.636300 CAGTCAAACTGGATCCCAAACAA 59.364 43.478 9.90 0.00 42.35 2.83
19 20 3.221771 CAGTCAAACTGGATCCCAAACA 58.778 45.455 9.90 0.00 42.35 2.83
20 21 2.029918 GCAGTCAAACTGGATCCCAAAC 60.030 50.000 9.90 0.00 46.01 2.93
21 22 2.158475 AGCAGTCAAACTGGATCCCAAA 60.158 45.455 9.90 0.00 46.01 3.28
22 23 1.425066 AGCAGTCAAACTGGATCCCAA 59.575 47.619 9.90 0.00 46.01 4.12
23 24 1.003580 GAGCAGTCAAACTGGATCCCA 59.996 52.381 9.90 0.00 46.01 4.37
24 25 1.680249 GGAGCAGTCAAACTGGATCCC 60.680 57.143 9.90 0.00 46.01 3.85
25 26 1.680249 GGGAGCAGTCAAACTGGATCC 60.680 57.143 4.20 4.20 46.01 3.36
26 27 1.280421 AGGGAGCAGTCAAACTGGATC 59.720 52.381 9.01 0.00 46.01 3.36
27 28 1.280421 GAGGGAGCAGTCAAACTGGAT 59.720 52.381 9.01 0.00 46.01 3.41
28 29 0.687354 GAGGGAGCAGTCAAACTGGA 59.313 55.000 9.01 0.00 46.01 3.86
29 30 0.689623 AGAGGGAGCAGTCAAACTGG 59.310 55.000 9.01 0.00 46.01 4.00
31 32 0.980423 GGAGAGGGAGCAGTCAAACT 59.020 55.000 0.00 0.00 0.00 2.66
32 33 0.687354 TGGAGAGGGAGCAGTCAAAC 59.313 55.000 0.00 0.00 0.00 2.93
33 34 1.280133 CATGGAGAGGGAGCAGTCAAA 59.720 52.381 0.00 0.00 0.00 2.69
34 35 0.907486 CATGGAGAGGGAGCAGTCAA 59.093 55.000 0.00 0.00 0.00 3.18
35 36 1.620739 GCATGGAGAGGGAGCAGTCA 61.621 60.000 0.00 0.00 0.00 3.41
36 37 1.145819 GCATGGAGAGGGAGCAGTC 59.854 63.158 0.00 0.00 0.00 3.51
37 38 1.306825 AGCATGGAGAGGGAGCAGT 60.307 57.895 0.00 0.00 0.00 4.40
38 39 1.446791 GAGCATGGAGAGGGAGCAG 59.553 63.158 0.00 0.00 0.00 4.24
39 40 2.068821 GGAGCATGGAGAGGGAGCA 61.069 63.158 0.00 0.00 0.00 4.26
40 41 2.817056 GGGAGCATGGAGAGGGAGC 61.817 68.421 0.00 0.00 0.00 4.70
41 42 1.383664 TGGGAGCATGGAGAGGGAG 60.384 63.158 0.00 0.00 0.00 4.30
42 43 1.690633 GTGGGAGCATGGAGAGGGA 60.691 63.158 0.00 0.00 0.00 4.20
43 44 1.277580 AAGTGGGAGCATGGAGAGGG 61.278 60.000 0.00 0.00 0.00 4.30
44 45 0.179936 GAAGTGGGAGCATGGAGAGG 59.820 60.000 0.00 0.00 0.00 3.69
45 46 0.907486 TGAAGTGGGAGCATGGAGAG 59.093 55.000 0.00 0.00 0.00 3.20
46 47 1.487976 GATGAAGTGGGAGCATGGAGA 59.512 52.381 0.00 0.00 0.00 3.71
47 48 1.476471 GGATGAAGTGGGAGCATGGAG 60.476 57.143 0.00 0.00 0.00 3.86
48 49 0.548031 GGATGAAGTGGGAGCATGGA 59.452 55.000 0.00 0.00 0.00 3.41
49 50 0.549950 AGGATGAAGTGGGAGCATGG 59.450 55.000 0.00 0.00 0.00 3.66
50 51 2.804572 CGTAGGATGAAGTGGGAGCATG 60.805 54.545 0.00 0.00 0.00 4.06
51 52 1.414181 CGTAGGATGAAGTGGGAGCAT 59.586 52.381 0.00 0.00 0.00 3.79
52 53 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
53 54 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
67 68 3.889520 AAGGGAAAAGAGTAGCCGTAG 57.110 47.619 0.00 0.00 0.00 3.51
68 69 4.628963 AAAAGGGAAAAGAGTAGCCGTA 57.371 40.909 0.00 0.00 0.00 4.02
69 70 3.503800 AAAAGGGAAAAGAGTAGCCGT 57.496 42.857 0.00 0.00 0.00 5.68
70 71 4.072839 AGAAAAAGGGAAAAGAGTAGCCG 58.927 43.478 0.00 0.00 0.00 5.52
71 72 6.406692 AAAGAAAAAGGGAAAAGAGTAGCC 57.593 37.500 0.00 0.00 0.00 3.93
93 94 6.386050 AGAGGGGGAGACGATTAGATTAAAAA 59.614 38.462 0.00 0.00 0.00 1.94
94 95 5.903589 AGAGGGGGAGACGATTAGATTAAAA 59.096 40.000 0.00 0.00 0.00 1.52
95 96 5.304614 CAGAGGGGGAGACGATTAGATTAAA 59.695 44.000 0.00 0.00 0.00 1.52
96 97 4.833380 CAGAGGGGGAGACGATTAGATTAA 59.167 45.833 0.00 0.00 0.00 1.40
97 98 4.105858 TCAGAGGGGGAGACGATTAGATTA 59.894 45.833 0.00 0.00 0.00 1.75
98 99 3.117093 TCAGAGGGGGAGACGATTAGATT 60.117 47.826 0.00 0.00 0.00 2.40
99 100 2.447429 TCAGAGGGGGAGACGATTAGAT 59.553 50.000 0.00 0.00 0.00 1.98
100 101 1.850998 TCAGAGGGGGAGACGATTAGA 59.149 52.381 0.00 0.00 0.00 2.10
101 102 2.366640 TCAGAGGGGGAGACGATTAG 57.633 55.000 0.00 0.00 0.00 1.73
102 103 3.330126 AATCAGAGGGGGAGACGATTA 57.670 47.619 0.00 0.00 0.00 1.75
103 104 2.182516 AATCAGAGGGGGAGACGATT 57.817 50.000 0.00 0.00 0.00 3.34
104 105 2.182516 AAATCAGAGGGGGAGACGAT 57.817 50.000 0.00 0.00 0.00 3.73
105 106 1.831736 GAAAATCAGAGGGGGAGACGA 59.168 52.381 0.00 0.00 0.00 4.20
106 107 1.555075 TGAAAATCAGAGGGGGAGACG 59.445 52.381 0.00 0.00 0.00 4.18
107 108 3.721087 TTGAAAATCAGAGGGGGAGAC 57.279 47.619 0.00 0.00 0.00 3.36
108 109 3.010584 CCTTTGAAAATCAGAGGGGGAGA 59.989 47.826 8.65 0.00 43.05 3.71
109 110 3.010584 TCCTTTGAAAATCAGAGGGGGAG 59.989 47.826 14.76 0.00 45.81 4.30
110 111 2.993146 TCCTTTGAAAATCAGAGGGGGA 59.007 45.455 14.76 2.37 45.81 4.81
111 112 3.456380 TCCTTTGAAAATCAGAGGGGG 57.544 47.619 14.76 0.43 45.81 5.40
112 113 3.703052 CCATCCTTTGAAAATCAGAGGGG 59.297 47.826 14.76 7.26 45.81 4.79
113 114 3.703052 CCCATCCTTTGAAAATCAGAGGG 59.297 47.826 14.76 4.91 45.81 4.30
114 115 3.703052 CCCCATCCTTTGAAAATCAGAGG 59.297 47.826 9.96 9.96 46.80 3.69
115 116 3.131755 GCCCCATCCTTTGAAAATCAGAG 59.868 47.826 0.00 0.00 0.00 3.35
116 117 3.099141 GCCCCATCCTTTGAAAATCAGA 58.901 45.455 0.00 0.00 0.00 3.27
117 118 2.169144 GGCCCCATCCTTTGAAAATCAG 59.831 50.000 0.00 0.00 0.00 2.90
118 119 2.187100 GGCCCCATCCTTTGAAAATCA 58.813 47.619 0.00 0.00 0.00 2.57
119 120 1.136891 CGGCCCCATCCTTTGAAAATC 59.863 52.381 0.00 0.00 0.00 2.17
120 121 1.194218 CGGCCCCATCCTTTGAAAAT 58.806 50.000 0.00 0.00 0.00 1.82
121 122 0.902516 CCGGCCCCATCCTTTGAAAA 60.903 55.000 0.00 0.00 0.00 2.29
122 123 1.304879 CCGGCCCCATCCTTTGAAA 60.305 57.895 0.00 0.00 0.00 2.69
123 124 2.358619 CCGGCCCCATCCTTTGAA 59.641 61.111 0.00 0.00 0.00 2.69
124 125 3.738481 CCCGGCCCCATCCTTTGA 61.738 66.667 0.00 0.00 0.00 2.69
136 137 1.822371 TGAAAGAAAATAAGGCCCGGC 59.178 47.619 0.00 0.00 0.00 6.13
137 138 4.159506 TGATTGAAAGAAAATAAGGCCCGG 59.840 41.667 0.00 0.00 0.00 5.73
138 139 5.323371 TGATTGAAAGAAAATAAGGCCCG 57.677 39.130 0.00 0.00 0.00 6.13
139 140 7.823799 TGATTTGATTGAAAGAAAATAAGGCCC 59.176 33.333 0.00 0.00 0.00 5.80
140 141 8.776376 TGATTTGATTGAAAGAAAATAAGGCC 57.224 30.769 0.00 0.00 0.00 5.19
144 145 9.775854 TGGCTTGATTTGATTGAAAGAAAATAA 57.224 25.926 0.00 0.00 0.00 1.40
145 146 9.206870 GTGGCTTGATTTGATTGAAAGAAAATA 57.793 29.630 0.00 0.00 0.00 1.40
146 147 7.095523 CGTGGCTTGATTTGATTGAAAGAAAAT 60.096 33.333 0.00 0.00 0.00 1.82
147 148 6.200665 CGTGGCTTGATTTGATTGAAAGAAAA 59.799 34.615 0.00 0.00 0.00 2.29
148 149 5.691305 CGTGGCTTGATTTGATTGAAAGAAA 59.309 36.000 0.00 0.00 0.00 2.52
149 150 5.221224 ACGTGGCTTGATTTGATTGAAAGAA 60.221 36.000 0.00 0.00 0.00 2.52
150 151 4.278170 ACGTGGCTTGATTTGATTGAAAGA 59.722 37.500 0.00 0.00 0.00 2.52
151 152 4.549458 ACGTGGCTTGATTTGATTGAAAG 58.451 39.130 0.00 0.00 0.00 2.62
152 153 4.582701 ACGTGGCTTGATTTGATTGAAA 57.417 36.364 0.00 0.00 0.00 2.69
153 154 5.639757 CATACGTGGCTTGATTTGATTGAA 58.360 37.500 0.00 0.00 0.00 2.69
154 155 4.438608 GCATACGTGGCTTGATTTGATTGA 60.439 41.667 0.00 0.00 0.00 2.57
155 156 3.792956 GCATACGTGGCTTGATTTGATTG 59.207 43.478 0.00 0.00 0.00 2.67
156 157 3.487376 CGCATACGTGGCTTGATTTGATT 60.487 43.478 11.48 0.00 33.53 2.57
157 158 2.032054 CGCATACGTGGCTTGATTTGAT 59.968 45.455 11.48 0.00 33.53 2.57
158 159 1.396648 CGCATACGTGGCTTGATTTGA 59.603 47.619 11.48 0.00 33.53 2.69
159 160 1.531677 CCGCATACGTGGCTTGATTTG 60.532 52.381 11.48 0.00 35.59 2.32
160 161 0.732571 CCGCATACGTGGCTTGATTT 59.267 50.000 11.48 0.00 35.59 2.17
161 162 1.095228 CCCGCATACGTGGCTTGATT 61.095 55.000 11.48 0.00 41.87 2.57
162 163 1.523711 CCCGCATACGTGGCTTGAT 60.524 57.895 11.48 0.00 41.87 2.57
163 164 2.125310 CCCGCATACGTGGCTTGA 60.125 61.111 11.48 0.00 41.87 3.02
164 165 2.125310 TCCCGCATACGTGGCTTG 60.125 61.111 11.48 3.68 41.87 4.01
165 166 2.186903 CTCCCGCATACGTGGCTT 59.813 61.111 11.48 0.00 41.87 4.35
166 167 4.530857 GCTCCCGCATACGTGGCT 62.531 66.667 11.48 0.00 41.87 4.75
167 168 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
176 177 0.871057 GCTTCTATTCATGCTCCCGC 59.129 55.000 0.00 0.00 0.00 6.13
177 178 2.245159 TGCTTCTATTCATGCTCCCG 57.755 50.000 0.00 0.00 0.00 5.14
178 179 2.818432 CCATGCTTCTATTCATGCTCCC 59.182 50.000 0.00 0.00 38.89 4.30
179 180 3.748083 TCCATGCTTCTATTCATGCTCC 58.252 45.455 0.00 0.00 38.89 4.70
180 181 5.278364 CCTTTCCATGCTTCTATTCATGCTC 60.278 44.000 0.00 0.00 38.89 4.26
181 182 4.583489 CCTTTCCATGCTTCTATTCATGCT 59.417 41.667 0.00 0.00 38.89 3.79
182 183 4.261909 CCCTTTCCATGCTTCTATTCATGC 60.262 45.833 0.00 0.00 38.89 4.06
183 184 5.135383 TCCCTTTCCATGCTTCTATTCATG 58.865 41.667 0.00 0.00 39.67 3.07
184 185 5.383476 CTCCCTTTCCATGCTTCTATTCAT 58.617 41.667 0.00 0.00 0.00 2.57
185 186 4.785301 CTCCCTTTCCATGCTTCTATTCA 58.215 43.478 0.00 0.00 0.00 2.57
186 187 3.567585 GCTCCCTTTCCATGCTTCTATTC 59.432 47.826 0.00 0.00 0.00 1.75
187 188 3.053395 TGCTCCCTTTCCATGCTTCTATT 60.053 43.478 0.00 0.00 0.00 1.73
188 189 2.511218 TGCTCCCTTTCCATGCTTCTAT 59.489 45.455 0.00 0.00 0.00 1.98
189 190 1.915489 TGCTCCCTTTCCATGCTTCTA 59.085 47.619 0.00 0.00 0.00 2.10
190 191 0.700564 TGCTCCCTTTCCATGCTTCT 59.299 50.000 0.00 0.00 0.00 2.85
191 192 1.101331 CTGCTCCCTTTCCATGCTTC 58.899 55.000 0.00 0.00 0.00 3.86
192 193 0.324091 CCTGCTCCCTTTCCATGCTT 60.324 55.000 0.00 0.00 0.00 3.91
193 194 1.305623 CCTGCTCCCTTTCCATGCT 59.694 57.895 0.00 0.00 0.00 3.79
194 195 2.421399 GCCTGCTCCCTTTCCATGC 61.421 63.158 0.00 0.00 0.00 4.06
195 196 0.612732 TTGCCTGCTCCCTTTCCATG 60.613 55.000 0.00 0.00 0.00 3.66
196 197 0.324091 CTTGCCTGCTCCCTTTCCAT 60.324 55.000 0.00 0.00 0.00 3.41
197 198 1.075482 CTTGCCTGCTCCCTTTCCA 59.925 57.895 0.00 0.00 0.00 3.53
198 199 0.962855 GACTTGCCTGCTCCCTTTCC 60.963 60.000 0.00 0.00 0.00 3.13
199 200 0.962855 GGACTTGCCTGCTCCCTTTC 60.963 60.000 0.00 0.00 0.00 2.62
200 201 1.075659 GGACTTGCCTGCTCCCTTT 59.924 57.895 0.00 0.00 0.00 3.11
201 202 2.759795 GGACTTGCCTGCTCCCTT 59.240 61.111 0.00 0.00 0.00 3.95
202 203 3.334054 GGGACTTGCCTGCTCCCT 61.334 66.667 7.50 0.00 40.69 4.20
203 204 4.432741 GGGGACTTGCCTGCTCCC 62.433 72.222 6.42 6.42 42.88 4.30
204 205 4.432741 GGGGGACTTGCCTGCTCC 62.433 72.222 0.00 0.00 36.66 4.70
222 223 2.547855 GCAGCTAAACCCCAAACAAAGG 60.548 50.000 0.00 0.00 0.00 3.11
294 295 1.455248 TAATACCCAACAGCAACGGC 58.545 50.000 0.00 0.00 41.61 5.68
302 308 7.148205 GCGAGGTTAGAAAAATAATACCCAACA 60.148 37.037 0.00 0.00 0.00 3.33
328 334 4.592485 ATTATTGCTCGTCTACAGGAGG 57.408 45.455 0.00 0.00 35.41 4.30
331 337 8.812147 TGTTATTATTATTGCTCGTCTACAGG 57.188 34.615 0.00 0.00 0.00 4.00
377 383 3.740128 ATGCACCATCGCGTCTCCC 62.740 63.158 5.77 0.00 33.35 4.30
434 440 1.406065 ATCTGGGCTCCTGTGATCCG 61.406 60.000 0.00 0.00 0.00 4.18
435 441 0.396060 GATCTGGGCTCCTGTGATCC 59.604 60.000 0.00 0.00 0.00 3.36
436 442 1.070445 CTGATCTGGGCTCCTGTGATC 59.930 57.143 0.00 0.00 35.44 2.92
437 443 1.129917 CTGATCTGGGCTCCTGTGAT 58.870 55.000 0.00 0.00 0.00 3.06
438 444 0.979709 CCTGATCTGGGCTCCTGTGA 60.980 60.000 10.73 0.00 0.00 3.58
439 445 1.525923 CCTGATCTGGGCTCCTGTG 59.474 63.158 10.73 0.00 0.00 3.66
440 446 2.373707 GCCTGATCTGGGCTCCTGT 61.374 63.158 19.23 0.00 45.57 4.00
441 447 2.509916 GCCTGATCTGGGCTCCTG 59.490 66.667 19.23 0.00 45.57 3.86
465 471 3.270877 GTTCCGTTGGAGCTATCATTGT 58.729 45.455 0.00 0.00 31.21 2.71
480 486 0.963962 ATGTGTCGTGTAGGTTCCGT 59.036 50.000 0.00 0.00 0.00 4.69
482 488 2.416972 GGAGATGTGTCGTGTAGGTTCC 60.417 54.545 0.00 0.00 0.00 3.62
493 2324 0.924090 GACGCGATTGGAGATGTGTC 59.076 55.000 15.93 0.00 35.08 3.67
528 2364 5.075493 TCAGATGATTCAGATCAGATCGGA 58.925 41.667 9.02 9.02 45.01 4.55
543 2379 1.539388 GCTCGAGTCCGATCAGATGAT 59.461 52.381 15.13 0.00 44.62 2.45
544 2380 0.947960 GCTCGAGTCCGATCAGATGA 59.052 55.000 15.13 0.00 44.62 2.92
545 2381 0.950836 AGCTCGAGTCCGATCAGATG 59.049 55.000 15.13 0.00 44.62 2.90
569 2406 1.650536 CGACGTGCTACCGATCGAC 60.651 63.158 18.66 5.16 35.17 4.20
651 2491 3.224324 CAGGGCCATGCTCATGCC 61.224 66.667 3.55 8.94 37.49 4.40
711 2551 2.963101 AGTGTTACACTGAGCTGGTACA 59.037 45.455 17.92 0.00 43.63 2.90
818 2658 0.523968 GGTACGCGCACGAATCAGTA 60.524 55.000 5.73 0.00 43.93 2.74
920 2760 2.359107 CGTGGGCTCTGTGCATGT 60.359 61.111 3.96 0.00 45.15 3.21
921 2761 1.915614 GAACGTGGGCTCTGTGCATG 61.916 60.000 3.96 0.00 45.15 4.06
991 2831 2.612115 AGGGCAGGAAGGTGAGGG 60.612 66.667 0.00 0.00 0.00 4.30
1026 2866 1.590525 ACGCAACGCAACGAGAAGA 60.591 52.632 0.00 0.00 0.00 2.87
1052 2892 1.361993 GCTCCGATCAGATCACGCT 59.638 57.895 11.12 0.00 0.00 5.07
1053 2893 1.663074 GGCTCCGATCAGATCACGC 60.663 63.158 11.12 8.73 0.00 5.34
1054 2894 0.318529 CAGGCTCCGATCAGATCACG 60.319 60.000 11.12 0.00 0.00 4.35
1055 2895 1.000385 CTCAGGCTCCGATCAGATCAC 60.000 57.143 11.12 0.00 0.00 3.06
1056 2896 1.326328 CTCAGGCTCCGATCAGATCA 58.674 55.000 11.12 0.00 0.00 2.92
1057 2897 0.038343 GCTCAGGCTCCGATCAGATC 60.038 60.000 0.00 0.00 35.22 2.75
1202 3043 4.724602 TCCTCGTGCTGCTGCGAC 62.725 66.667 11.21 9.15 43.34 5.19
1239 3080 1.077930 TCCTCTTGCTGCTGATGCC 60.078 57.895 0.00 0.00 38.71 4.40
1243 3084 0.612229 CTTCCTCCTCTTGCTGCTGA 59.388 55.000 0.00 0.00 0.00 4.26
1289 3136 1.073722 ACCGGTAGAGGACGACACA 59.926 57.895 4.49 0.00 34.73 3.72
1367 3214 0.249489 GGTGTATGTAGCAGCGGAGG 60.249 60.000 0.00 0.00 0.00 4.30
1373 3220 2.515926 AGATGCGGTGTATGTAGCAG 57.484 50.000 0.00 0.00 43.20 4.24
1402 3249 1.541588 GAACAGCATTCTTGGGTCCAC 59.458 52.381 0.00 0.00 0.00 4.02
1403 3250 1.547675 GGAACAGCATTCTTGGGTCCA 60.548 52.381 0.00 0.00 0.00 4.02
1406 3253 0.609131 CGGGAACAGCATTCTTGGGT 60.609 55.000 1.30 0.00 0.00 4.51
1408 3255 1.508088 GCGGGAACAGCATTCTTGG 59.492 57.895 1.30 0.00 34.19 3.61
1416 3263 4.821589 CTCTCCGGCGGGAACAGC 62.822 72.222 27.98 0.00 43.27 4.40
1424 3271 4.507916 TCCTCCTCCTCTCCGGCG 62.508 72.222 0.00 0.00 0.00 6.46
1426 3273 1.152839 GTCTCCTCCTCCTCTCCGG 60.153 68.421 0.00 0.00 0.00 5.14
1437 3284 0.241481 GTGGTCGTGACAGTCTCCTC 59.759 60.000 1.31 0.00 0.00 3.71
1727 3577 2.997897 AGGTGGGTGAGCTCCGAC 60.998 66.667 12.15 4.56 35.86 4.79
2461 4313 0.248289 CACACCCACCTACCTAACGG 59.752 60.000 0.00 0.00 0.00 4.44
2616 4473 2.516589 CGACGCGACATCATGGTGG 61.517 63.158 15.93 0.00 0.00 4.61
2635 4496 2.589540 CGGGGCTAATGGCAGACA 59.410 61.111 0.00 0.00 44.01 3.41
2655 4516 1.891178 TATCGCGCGTATGAGCATAC 58.109 50.000 30.98 9.95 41.47 2.39
2670 4531 8.752254 CCACACACACTAGTACATAATTTATCG 58.248 37.037 0.00 0.00 0.00 2.92
2671 4532 9.595823 ACCACACACACTAGTACATAATTTATC 57.404 33.333 0.00 0.00 0.00 1.75
2673 4534 9.210329 CAACCACACACACTAGTACATAATTTA 57.790 33.333 0.00 0.00 0.00 1.40
2674 4535 7.174253 CCAACCACACACACTAGTACATAATTT 59.826 37.037 0.00 0.00 0.00 1.82
2675 4536 6.653320 CCAACCACACACACTAGTACATAATT 59.347 38.462 0.00 0.00 0.00 1.40
2676 4537 6.170506 CCAACCACACACACTAGTACATAAT 58.829 40.000 0.00 0.00 0.00 1.28
2677 4538 5.543714 CCAACCACACACACTAGTACATAA 58.456 41.667 0.00 0.00 0.00 1.90
2679 4540 3.805807 GCCAACCACACACACTAGTACAT 60.806 47.826 0.00 0.00 0.00 2.29
2680 4541 2.484065 GCCAACCACACACACTAGTACA 60.484 50.000 0.00 0.00 0.00 2.90
2681 4542 2.140717 GCCAACCACACACACTAGTAC 58.859 52.381 0.00 0.00 0.00 2.73
2682 4543 1.763545 TGCCAACCACACACACTAGTA 59.236 47.619 0.00 0.00 0.00 1.82
2683 4544 0.544223 TGCCAACCACACACACTAGT 59.456 50.000 0.00 0.00 0.00 2.57
2684 4545 1.536766 CATGCCAACCACACACACTAG 59.463 52.381 0.00 0.00 0.00 2.57
2803 4923 5.749462 AGGAGATATGAACCAAAGAACCAG 58.251 41.667 0.00 0.00 0.00 4.00
2834 5379 1.654105 GTCCACATCACGTCAATCGAC 59.346 52.381 0.00 0.00 42.86 4.20
2847 5392 4.735369 TCACTAACCCAAATTGTCCACAT 58.265 39.130 0.00 0.00 0.00 3.21
2854 5399 6.092748 CGAAGGAATTCACTAACCCAAATTG 58.907 40.000 7.93 0.00 0.00 2.32
2878 5423 0.733909 GCGGCTTTGCTTTCATGACC 60.734 55.000 0.00 0.00 0.00 4.02
2927 5472 3.581755 CTCAAAGATGCCCAACAACATG 58.418 45.455 0.00 0.00 0.00 3.21
2949 5494 2.644992 GCCTCTGTTTGCCAACGG 59.355 61.111 3.07 3.07 40.29 4.44
2977 5522 2.628178 TCATCCGTGTAGATGGACATCC 59.372 50.000 2.29 0.00 43.25 3.51
2991 5536 4.034048 GATGAAAAGCATAACGTCATCCGT 59.966 41.667 0.00 0.00 44.92 4.69
2996 5541 5.457140 GGTTTGATGAAAAGCATAACGTCA 58.543 37.500 0.00 0.00 44.14 4.35
3047 5592 1.204704 CCGAAGGCCTCCAAAATTTCC 59.795 52.381 5.23 0.00 46.14 3.13
3140 5685 1.108776 ATGCATTCTGTGTCATGGCC 58.891 50.000 0.00 0.00 0.00 5.36
3147 5692 0.114954 ACCCCCAATGCATTCTGTGT 59.885 50.000 9.53 2.19 0.00 3.72
3151 5696 4.039042 GCACCCCCAATGCATTCT 57.961 55.556 9.53 0.00 42.88 2.40
3178 5723 3.244353 CCTAGATACTTGCACTGGGATGG 60.244 52.174 0.00 0.00 34.88 3.51
3182 5727 1.202698 GCCCTAGATACTTGCACTGGG 60.203 57.143 0.00 0.00 36.63 4.45
3185 5730 1.139853 GCAGCCCTAGATACTTGCACT 59.860 52.381 0.00 0.00 0.00 4.40
3195 5740 2.283809 GGGAGAGGCAGCCCTAGA 59.716 66.667 8.22 0.00 43.12 2.43
3202 5747 2.203126 GCGAATGGGGAGAGGCAG 60.203 66.667 0.00 0.00 0.00 4.85
3211 5756 0.029834 GCATACTGCTTGCGAATGGG 59.970 55.000 0.00 0.00 40.96 4.00
3227 5772 2.041620 AGATATTGGTATTGGGCGGCAT 59.958 45.455 12.47 0.00 0.00 4.40
3291 5836 1.014564 GCCCACTCTTGTGTAGCGAC 61.015 60.000 0.00 0.00 42.34 5.19
3299 5844 0.109342 CAGAAGGTGCCCACTCTTGT 59.891 55.000 6.81 1.89 0.00 3.16
3311 5856 1.482593 CCGAGGTTATGAGCAGAAGGT 59.517 52.381 0.00 0.00 0.00 3.50
3375 5920 1.134371 GCCTTCAGAATCTTAGCCGGT 60.134 52.381 1.90 0.00 0.00 5.28
3376 5921 1.587547 GCCTTCAGAATCTTAGCCGG 58.412 55.000 0.00 0.00 0.00 6.13
3377 5922 1.139853 AGGCCTTCAGAATCTTAGCCG 59.860 52.381 0.00 0.00 43.72 5.52
3386 5931 5.628797 AAATTTTTCCAAGGCCTTCAGAA 57.371 34.783 17.29 18.52 0.00 3.02
3390 5935 6.521162 TCTACAAAATTTTTCCAAGGCCTTC 58.479 36.000 17.29 0.00 0.00 3.46
3405 5950 5.182001 GCACCACATGAAGTCTCTACAAAAT 59.818 40.000 0.00 0.00 0.00 1.82
3406 5951 4.515191 GCACCACATGAAGTCTCTACAAAA 59.485 41.667 0.00 0.00 0.00 2.44
3416 5961 1.417517 TCTCAGTGCACCACATGAAGT 59.582 47.619 14.63 0.00 36.74 3.01
3421 5966 1.002888 CTCCTTCTCAGTGCACCACAT 59.997 52.381 14.63 0.00 36.74 3.21
3430 5975 1.674057 CGTTGGCCTCCTTCTCAGT 59.326 57.895 3.32 0.00 0.00 3.41
3459 6004 1.533625 CTTGTTCCCAAGCCATCGAA 58.466 50.000 0.00 0.00 41.51 3.71
3516 6061 2.128035 CGATTGAGCCACCGTAGATTC 58.872 52.381 0.00 0.00 0.00 2.52
3551 6096 1.743996 TTTTTGCAACCAAAGCCACC 58.256 45.000 0.00 0.00 41.58 4.61
3572 6117 3.563261 CCTCCATGGTTATTGTTGGTCCA 60.563 47.826 12.58 0.00 0.00 4.02
3579 6124 5.205517 TGAATTCCCTCCATGGTTATTGT 57.794 39.130 12.58 0.00 0.00 2.71
3582 6127 5.472301 AGTTGAATTCCCTCCATGGTTAT 57.528 39.130 12.58 0.00 0.00 1.89
3583 6128 4.946160 AGTTGAATTCCCTCCATGGTTA 57.054 40.909 12.58 0.00 0.00 2.85
3584 6129 3.833559 AGTTGAATTCCCTCCATGGTT 57.166 42.857 12.58 0.00 0.00 3.67
3600 6145 0.389426 CGTCGGAGGTGGGTAAGTTG 60.389 60.000 0.00 0.00 0.00 3.16
3601 6146 0.540365 TCGTCGGAGGTGGGTAAGTT 60.540 55.000 0.00 0.00 0.00 2.66
3651 6196 2.993471 GCCCTTGCCAACATCCACG 61.993 63.158 0.00 0.00 0.00 4.94
3668 6213 2.034221 AAAACAGGGCCTCCTCGC 59.966 61.111 0.95 0.00 42.67 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.