Multiple sequence alignment - TraesCS4A01G089700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G089700 chr4A 100.000 4748 0 0 1 4748 96014333 96019080 0.000000e+00 8769.0
1 TraesCS4A01G089700 chr4A 100.000 31 0 0 4558 4588 96018850 96018880 1.850000e-04 58.4
2 TraesCS4A01G089700 chr4A 100.000 31 0 0 4518 4548 96018890 96018920 1.850000e-04 58.4
3 TraesCS4A01G089700 chr4D 94.037 2901 136 25 1669 4549 368872849 368869966 0.000000e+00 4364.0
4 TraesCS4A01G089700 chr4D 91.153 1232 73 17 326 1532 368874070 368872850 0.000000e+00 1639.0
5 TraesCS4A01G089700 chr4D 86.377 345 15 9 1 334 368875543 368875220 9.780000e-92 348.0
6 TraesCS4A01G089700 chr4B 95.800 2405 69 18 2151 4548 454040296 454037917 0.000000e+00 3853.0
7 TraesCS4A01G089700 chr4B 91.731 2189 81 47 1 2152 454042624 454040499 0.000000e+00 2948.0
8 TraesCS4A01G089700 chr4B 87.302 189 10 3 4549 4731 454037961 454037781 2.240000e-48 204.0
9 TraesCS4A01G089700 chr2D 89.032 155 15 2 4340 4493 79056167 79056320 1.740000e-44 191.0
10 TraesCS4A01G089700 chr6A 88.387 155 15 3 4340 4493 184388177 184388329 2.920000e-42 183.0
11 TraesCS4A01G089700 chr6A 86.792 159 19 2 4340 4497 118284356 118284199 4.880000e-40 176.0
12 TraesCS4A01G089700 chr5B 87.821 156 17 2 4340 4494 299602375 299602221 1.050000e-41 182.0
13 TraesCS4A01G089700 chr1A 86.471 170 17 5 4340 4508 555641258 555641094 1.050000e-41 182.0
14 TraesCS4A01G089700 chr7D 87.037 162 15 4 4335 4492 265692990 265692831 1.360000e-40 178.0
15 TraesCS4A01G089700 chr3D 87.662 154 17 2 4340 4491 315480425 315480578 1.360000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G089700 chr4A 96014333 96019080 4747 False 2961.933333 8769 100.000000 1 4748 3 chr4A.!!$F1 4747
1 TraesCS4A01G089700 chr4D 368869966 368875543 5577 True 2117.000000 4364 90.522333 1 4549 3 chr4D.!!$R1 4548
2 TraesCS4A01G089700 chr4B 454037781 454042624 4843 True 2335.000000 3853 91.611000 1 4731 3 chr4B.!!$R1 4730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
749 1936 0.108615 CTCGACCAGGTTGGCTACTG 60.109 60.000 7.02 0.0 42.67 2.74 F
1690 2911 1.802960 CCTGTGTCATCTGCAACTCAC 59.197 52.381 0.00 0.0 0.00 3.51 F
3401 4840 0.969149 TGGAAGCTGCGAGAAGAAGA 59.031 50.000 0.00 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 3142 1.010419 GCCGAGCAAAAATGCACTGG 61.010 55.0 3.41 3.05 37.25 4.00 R
3486 4925 1.172180 GCTGTGCTGTTGCTTGGGTA 61.172 55.0 0.00 0.00 40.48 3.69 R
4231 5677 1.668101 CTCCTCTAGGTGCGGTCCAC 61.668 65.0 0.00 0.00 43.90 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.275335 TGCAAGGAAAAGAAAAGTCAATCTG 58.725 36.000 0.00 0.00 0.00 2.90
76 80 1.796617 GCGAGAATTGCTTGGCATGTC 60.797 52.381 2.12 0.00 44.02 3.06
93 97 4.495019 GCATGTCGTTTGAACACACAACTA 60.495 41.667 0.00 0.00 0.00 2.24
414 1600 0.834612 TGACCCAGAAACGTGGACTT 59.165 50.000 0.00 0.00 40.44 3.01
424 1610 2.743928 GTGGACTTGCTGGAGGCG 60.744 66.667 0.00 0.00 45.43 5.52
467 1653 3.677648 CGTTCGTCGGACCACCCT 61.678 66.667 1.91 0.00 35.71 4.34
468 1654 2.260743 GTTCGTCGGACCACCCTC 59.739 66.667 1.91 0.00 0.00 4.30
469 1655 3.367743 TTCGTCGGACCACCCTCG 61.368 66.667 1.91 0.00 0.00 4.63
470 1656 3.848301 TTCGTCGGACCACCCTCGA 62.848 63.158 1.91 0.00 36.57 4.04
551 1738 2.511145 CTTCCGCCTGCTCTGCTC 60.511 66.667 0.00 0.00 0.00 4.26
552 1739 2.999648 TTCCGCCTGCTCTGCTCT 61.000 61.111 0.00 0.00 0.00 4.09
553 1740 3.306595 TTCCGCCTGCTCTGCTCTG 62.307 63.158 0.00 0.00 0.00 3.35
555 1742 4.454319 CGCCTGCTCTGCTCTGCT 62.454 66.667 0.00 0.00 0.00 4.24
562 1749 2.019897 GCTCTGCTCTGCTCTCCTCC 62.020 65.000 0.00 0.00 0.00 4.30
744 1931 2.266055 CTCCTCGACCAGGTTGGC 59.734 66.667 7.02 0.00 42.67 4.52
745 1932 2.203788 TCCTCGACCAGGTTGGCT 60.204 61.111 7.02 0.00 42.67 4.75
746 1933 0.970937 CTCCTCGACCAGGTTGGCTA 60.971 60.000 7.02 0.00 42.67 3.93
747 1934 1.218316 CCTCGACCAGGTTGGCTAC 59.782 63.158 7.02 0.00 42.67 3.58
748 1935 1.258445 CCTCGACCAGGTTGGCTACT 61.258 60.000 7.02 0.00 42.67 2.57
749 1936 0.108615 CTCGACCAGGTTGGCTACTG 60.109 60.000 7.02 0.00 42.67 2.74
822 2016 4.201881 GCCGTACAAATTTACAAGCTAGGG 60.202 45.833 0.00 0.00 0.00 3.53
826 2020 6.799925 CGTACAAATTTACAAGCTAGGGTTTG 59.200 38.462 0.00 0.00 39.14 2.93
838 2032 2.335712 GGGTTTGAGCTTCCCTGCG 61.336 63.158 9.11 0.00 38.29 5.18
877 2071 2.027751 GCGATCCGGTGGAGTAGC 59.972 66.667 0.00 0.00 34.05 3.58
918 2123 2.349590 TCAATCGTGCTGAGATGGTTG 58.650 47.619 0.00 0.00 0.00 3.77
1170 2376 6.332735 AGCTTTCCAACATTTTAGTCTTCC 57.667 37.500 0.00 0.00 0.00 3.46
1234 2441 2.819608 GGATTTGCTGCAAACTGTCCTA 59.180 45.455 28.11 5.77 36.13 2.94
1235 2442 3.445096 GGATTTGCTGCAAACTGTCCTAT 59.555 43.478 28.11 11.28 36.13 2.57
1236 2443 3.921119 TTTGCTGCAAACTGTCCTATG 57.079 42.857 22.84 0.00 0.00 2.23
1239 2446 3.334691 TGCTGCAAACTGTCCTATGTAC 58.665 45.455 0.00 0.00 0.00 2.90
1241 2448 3.270877 CTGCAAACTGTCCTATGTACCC 58.729 50.000 0.00 0.00 0.00 3.69
1247 2454 6.411376 CAAACTGTCCTATGTACCCATGTTA 58.589 40.000 0.00 0.00 32.29 2.41
1249 2456 6.824958 ACTGTCCTATGTACCCATGTTATT 57.175 37.500 0.00 0.00 32.29 1.40
1250 2457 7.208064 ACTGTCCTATGTACCCATGTTATTT 57.792 36.000 0.00 0.00 32.29 1.40
1283 2490 8.422566 ACTTTATGGTATCTCCTTACTAGTTGC 58.577 37.037 0.00 0.00 37.07 4.17
1305 2512 5.221402 TGCTCCAATTATTCAAGTGTTGCAA 60.221 36.000 0.00 0.00 35.06 4.08
1313 2520 3.713858 TCAAGTGTTGCAAATGGACTG 57.286 42.857 0.00 0.00 0.00 3.51
1358 2565 4.080299 CCTTCCCTAGTTAGTGCCTTGATT 60.080 45.833 0.00 0.00 0.00 2.57
1391 2612 2.363306 ACAATGGGACTGAAGCACAA 57.637 45.000 0.00 0.00 0.00 3.33
1469 2690 5.221342 TGTGCCTTAATGTTTTGTAACAGGG 60.221 40.000 0.00 0.00 46.71 4.45
1470 2691 4.282195 TGCCTTAATGTTTTGTAACAGGGG 59.718 41.667 0.00 0.00 46.71 4.79
1533 2754 8.432013 TGATAGTGCTATTGGTATGATGTTTCT 58.568 33.333 0.00 0.00 0.00 2.52
1663 2884 5.277011 GCCTTTTGTGTTCTGCATTTCTTTC 60.277 40.000 0.00 0.00 0.00 2.62
1667 2888 4.300803 TGTGTTCTGCATTTCTTTCATGC 58.699 39.130 0.00 0.00 46.25 4.06
1690 2911 1.802960 CCTGTGTCATCTGCAACTCAC 59.197 52.381 0.00 0.00 0.00 3.51
1838 3062 2.109425 AGCCGAGGTTTTGGTATGTC 57.891 50.000 0.00 0.00 0.00 3.06
1901 3125 6.364701 CACCCTCAAATCCTCAACCATAATA 58.635 40.000 0.00 0.00 0.00 0.98
2132 3357 9.653287 TTATAAGGTGAATCATTGGATCGTATC 57.347 33.333 0.00 0.00 31.88 2.24
2156 3585 5.753438 CGCTGCCTTCTTACTTTATATGTCA 59.247 40.000 0.00 0.00 0.00 3.58
2692 4121 3.782046 TCTTACTTGATAAGACGCTGGC 58.218 45.455 0.00 0.00 43.66 4.85
2821 4250 6.581166 GGTGTATTTACTTGCTTTTACAGTGC 59.419 38.462 0.00 0.00 0.00 4.40
2858 4287 7.843490 TTTATGTAGATTTTCTCCGGAACAG 57.157 36.000 5.23 0.00 0.00 3.16
2880 4310 7.321153 ACAGATATCGTGCAGTACTTACTTTT 58.679 34.615 0.00 0.00 33.46 2.27
2891 4321 7.117236 TGCAGTACTTACTTTTACGATGAAAGG 59.883 37.037 0.00 3.49 38.20 3.11
3065 4497 1.065854 ACTTGGCTCCAGAGTATGCAC 60.066 52.381 0.00 0.00 0.00 4.57
3200 4632 3.447229 CCTTGTGGAATGGGTAATTCACC 59.553 47.826 0.94 0.00 45.69 4.02
3203 4635 7.706977 CCTTGTGGAATGGGTAATTCACCTTT 61.707 42.308 0.94 0.71 45.69 3.11
3228 4667 3.645212 CTCTCCTTTCTCCATAGGATGCA 59.355 47.826 0.00 0.00 39.72 3.96
3283 4722 2.289820 AGCATCATAAATCTGCGCACAG 59.710 45.455 5.66 0.00 45.95 3.66
3312 4751 4.660771 CCTAGATTTCCCCATGGTAGACTT 59.339 45.833 11.73 0.00 0.00 3.01
3338 4777 4.379652 TCACATATTGGTGATGGTGATCG 58.620 43.478 0.00 0.00 42.56 3.69
3401 4840 0.969149 TGGAAGCTGCGAGAAGAAGA 59.031 50.000 0.00 0.00 0.00 2.87
3405 4844 1.832883 AGCTGCGAGAAGAAGAGAGA 58.167 50.000 0.00 0.00 0.00 3.10
3486 4925 0.546122 TCAAGGTGGCACTTCTGTGT 59.454 50.000 18.45 0.00 45.44 3.72
3615 5054 2.068915 ACCCCGTCGTAAAATGGGT 58.931 52.632 2.15 2.15 43.10 4.51
3737 5176 4.929819 ATTTTAGCACAACGGAGGTTTT 57.070 36.364 0.00 0.00 32.98 2.43
3870 5309 4.588899 TGCACATAATGTACTTGAAGCCT 58.411 39.130 0.00 0.00 0.00 4.58
3913 5352 1.110442 CTGAGGGGAGTAGCTGTGAG 58.890 60.000 0.00 0.00 0.00 3.51
3996 5438 1.728074 TGTAGAGACGCGTTGCACG 60.728 57.895 15.53 4.61 45.88 5.34
4019 5461 2.939103 GCATTATGTCGTTGGAGCTTCT 59.061 45.455 0.00 0.00 0.00 2.85
4042 5484 3.472283 ACAGAAGGCAGCATATGAGAG 57.528 47.619 6.97 0.00 0.00 3.20
4060 5502 0.534412 AGAGATGTGGCGAGGAACAG 59.466 55.000 0.00 0.00 0.00 3.16
4077 5520 0.671781 CAGGCTGAACAGTTCCCTCG 60.672 60.000 9.42 3.15 0.00 4.63
4176 5622 3.947910 TGGTTAGTTTCTACAGACCGG 57.052 47.619 0.00 0.00 35.46 5.28
4226 5672 6.756542 GGTGGGATGTTGCAGTTTATAATTTC 59.243 38.462 0.00 0.00 0.00 2.17
4263 5709 0.918310 AGAGGAGCCCAATTGGAGCT 60.918 55.000 29.48 29.48 41.99 4.09
4304 5751 5.112220 TCTTTGAATGACAGTTCACATGC 57.888 39.130 0.00 0.00 37.80 4.06
4367 5814 5.049405 CCCTCCGTTCACAAATATAAGATGC 60.049 44.000 0.00 0.00 0.00 3.91
4424 5871 4.725359 ACGTTTTAGTGTGTTTGTTCACC 58.275 39.130 0.00 0.00 37.51 4.02
4432 5879 2.162608 TGTGTTTGTTCACCCGTTTCTG 59.837 45.455 0.00 0.00 37.51 3.02
4446 5893 3.378339 CGTTTCTGTCCGTTTGTAGTCT 58.622 45.455 0.00 0.00 0.00 3.24
4534 5982 9.859427 AAATATGACATGACAATACCAACAAAG 57.141 29.630 0.00 0.00 0.00 2.77
4535 5983 8.806429 ATATGACATGACAATACCAACAAAGA 57.194 30.769 0.00 0.00 0.00 2.52
4536 5984 7.707624 ATGACATGACAATACCAACAAAGAT 57.292 32.000 0.00 0.00 0.00 2.40
4537 5985 8.806429 ATGACATGACAATACCAACAAAGATA 57.194 30.769 0.00 0.00 0.00 1.98
4538 5986 8.806429 TGACATGACAATACCAACAAAGATAT 57.194 30.769 0.00 0.00 0.00 1.63
4539 5987 9.898152 TGACATGACAATACCAACAAAGATATA 57.102 29.630 0.00 0.00 0.00 0.86
4595 6043 8.250332 ACAAAGATATATTGTCAACGCCAAATT 58.750 29.630 1.49 0.00 36.28 1.82
4612 6060 6.128607 CGCCAAATTATTTTGACATTGCAAGA 60.129 34.615 4.94 0.00 44.11 3.02
4614 6062 7.906527 GCCAAATTATTTTGACATTGCAAGATC 59.093 33.333 4.94 5.51 44.11 2.75
4685 6133 4.077822 TGAATCCAATGCATGTGTGTGTA 58.922 39.130 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.049405 TCGCTCCAGATTGACTTTTCTTTTC 60.049 40.000 0.00 0.00 0.00 2.29
53 54 1.308069 TGCCAAGCAATTCTCGCTCC 61.308 55.000 0.00 0.00 39.29 4.70
69 70 1.064803 TGTGTGTTCAAACGACATGCC 59.935 47.619 0.00 0.00 0.00 4.40
70 71 2.466870 TGTGTGTTCAAACGACATGC 57.533 45.000 0.00 0.00 0.00 4.06
73 77 5.006261 CAGATAGTTGTGTGTTCAAACGACA 59.994 40.000 13.85 0.00 33.78 4.35
76 80 4.211389 GCAGATAGTTGTGTGTTCAAACG 58.789 43.478 0.00 0.00 0.00 3.60
93 97 3.081061 TGTTATCAGCCGTTTTGCAGAT 58.919 40.909 0.00 0.00 40.17 2.90
233 250 3.951655 TACGCGGCTTCGTTCGTCC 62.952 63.158 12.47 0.00 43.15 4.79
234 251 2.502510 TACGCGGCTTCGTTCGTC 60.503 61.111 12.47 0.00 43.15 4.20
424 1610 1.674322 CGGTTGACCATGTGACCCC 60.674 63.158 0.51 0.00 35.14 4.95
464 1650 4.933064 GGCAGCGACGATCGAGGG 62.933 72.222 24.34 11.10 43.74 4.30
469 1655 3.969250 TTTGGGGGCAGCGACGATC 62.969 63.158 0.00 0.00 0.00 3.69
470 1656 3.561120 TTTTGGGGGCAGCGACGAT 62.561 57.895 0.00 0.00 0.00 3.73
773 1962 6.578023 ACACTAATCATCAGCTAGACTTTCC 58.422 40.000 0.00 0.00 0.00 3.13
822 2016 1.166531 ACACGCAGGGAAGCTCAAAC 61.167 55.000 0.00 0.00 0.00 2.93
826 2020 2.035442 GGAACACGCAGGGAAGCTC 61.035 63.158 0.00 0.00 0.00 4.09
838 2032 2.260743 GTCGACGGAGGGGAACAC 59.739 66.667 0.00 0.00 0.00 3.32
877 2071 1.634702 CAAACAAAACACACACGGGG 58.365 50.000 0.00 0.00 0.00 5.73
1136 2342 4.151883 TGTTGGAAAGCTTTAAGCAGGAT 58.848 39.130 19.63 1.72 45.56 3.24
1234 2441 5.420739 GTGGTTGGAAATAACATGGGTACAT 59.579 40.000 0.00 0.00 37.99 2.29
1235 2442 4.767928 GTGGTTGGAAATAACATGGGTACA 59.232 41.667 0.00 0.00 32.22 2.90
1236 2443 5.014202 AGTGGTTGGAAATAACATGGGTAC 58.986 41.667 0.00 0.00 32.22 3.34
1239 2446 5.482163 AAAGTGGTTGGAAATAACATGGG 57.518 39.130 0.00 0.00 32.22 4.00
1283 2490 7.148540 CCATTTGCAACACTTGAATAATTGGAG 60.149 37.037 0.00 0.00 30.93 3.86
1305 2512 8.910944 CCTAAATTTCTCATCATTCAGTCCATT 58.089 33.333 0.00 0.00 0.00 3.16
1313 2520 5.595952 AGGCACCCTAAATTTCTCATCATTC 59.404 40.000 0.00 0.00 28.47 2.67
1358 2565 9.137459 TCAGTCCCATTGTTAAAATTGACTTTA 57.863 29.630 0.00 0.00 29.89 1.85
1391 2612 7.942341 TCTGTGGTTTGTATTAATGGAAGTCTT 59.058 33.333 0.00 0.00 0.00 3.01
1448 2669 4.525100 TCCCCTGTTACAAAACATTAAGGC 59.475 41.667 0.00 0.00 44.43 4.35
1549 2770 4.392940 CAATGTTTTGGTATTTTGGGCCA 58.607 39.130 0.00 0.00 0.00 5.36
1560 2781 2.687700 TGTTGCTGCAATGTTTTGGT 57.312 40.000 19.11 0.00 33.22 3.67
1590 2811 7.641760 TGCGTGAACTTACGATTATACTCATA 58.358 34.615 2.14 0.00 46.46 2.15
1663 2884 1.938577 GCAGATGACACAGGTAGCATG 59.061 52.381 0.00 0.00 0.00 4.06
1667 2888 3.257393 GAGTTGCAGATGACACAGGTAG 58.743 50.000 0.00 0.00 0.00 3.18
1690 2911 7.305474 AGTGTAGGAAATGTTTCATTTAAGCG 58.695 34.615 7.54 0.00 38.92 4.68
1838 3062 8.306038 CCAAGATCCTCTCAGTTAGATGATTAG 58.694 40.741 0.00 0.00 39.05 1.73
1918 3142 1.010419 GCCGAGCAAAAATGCACTGG 61.010 55.000 3.41 3.05 37.25 4.00
2103 3328 7.228706 ACGATCCAATGATTCACCTTATAAACC 59.771 37.037 0.00 0.00 0.00 3.27
2132 3357 5.753438 TGACATATAAAGTAAGAAGGCAGCG 59.247 40.000 0.00 0.00 0.00 5.18
2771 4200 7.871973 CCAAAAGATATAGAGAGGACTGACATG 59.128 40.741 0.00 0.00 0.00 3.21
2858 4287 7.641411 TCGTAAAAGTAAGTACTGCACGATATC 59.359 37.037 13.86 0.00 38.49 1.63
2891 4321 7.546667 TGAAGGCAGCTGATTGAAATATTTTTC 59.453 33.333 20.43 2.03 41.39 2.29
3018 4450 2.824936 CTGCAGGAGAGATCATATCCGT 59.175 50.000 5.57 0.00 44.59 4.69
3065 4497 6.349363 GCTTTCTTGGTTAACTGTCCCAATAG 60.349 42.308 5.42 1.28 37.60 1.73
3200 4632 2.867109 TGGAGAAAGGAGAGGCAAAG 57.133 50.000 0.00 0.00 0.00 2.77
3203 4635 2.023015 TCCTATGGAGAAAGGAGAGGCA 60.023 50.000 0.00 0.00 36.97 4.75
3228 4667 7.611467 TCAAGAGTTCATACAAGCATGGTATTT 59.389 33.333 0.00 0.00 0.00 1.40
3283 4722 3.326297 CCATGGGGAAATCTAGGACTCTC 59.674 52.174 2.85 0.00 35.59 3.20
3401 4840 7.461749 TGGATCTACAATTTCCAAAAGTCTCT 58.538 34.615 0.00 0.00 36.62 3.10
3405 4844 6.149474 CGTCTGGATCTACAATTTCCAAAAGT 59.851 38.462 0.00 0.00 38.99 2.66
3486 4925 1.172180 GCTGTGCTGTTGCTTGGGTA 61.172 55.000 0.00 0.00 40.48 3.69
3615 5054 2.000048 AGAGCCAAATCCCCCAAACTA 59.000 47.619 0.00 0.00 0.00 2.24
3737 5176 2.463752 GTCCACCACATCACCTAGGTA 58.536 52.381 15.80 3.73 32.01 3.08
3870 5309 5.221601 GCATCCTGTCTATCTCCTGAATCAA 60.222 44.000 0.00 0.00 0.00 2.57
3913 5352 1.536766 TGCATTCTGTACAGCAGCAAC 59.463 47.619 24.59 11.74 44.66 4.17
3932 5371 7.081349 TGTGTTAAACTTTGAAGTGAAGTGTG 58.919 34.615 0.00 0.00 39.66 3.82
3933 5372 7.209471 TGTGTTAAACTTTGAAGTGAAGTGT 57.791 32.000 0.00 0.00 39.66 3.55
3996 5438 2.555199 AGCTCCAACGACATAATGCTC 58.445 47.619 0.00 0.00 0.00 4.26
4019 5461 3.198417 TCTCATATGCTGCCTTCTGTTGA 59.802 43.478 0.00 0.00 0.00 3.18
4042 5484 0.460987 CCTGTTCCTCGCCACATCTC 60.461 60.000 0.00 0.00 0.00 2.75
4060 5502 1.376037 CCGAGGGAACTGTTCAGCC 60.376 63.158 21.01 13.94 44.43 4.85
4077 5520 4.682778 TGTGACTAGGGTTATATGCACC 57.317 45.455 0.00 0.00 0.00 5.01
4160 5606 5.255687 TGTATCACCGGTCTGTAGAAACTA 58.744 41.667 2.59 0.00 0.00 2.24
4168 5614 3.767673 AGTACAATGTATCACCGGTCTGT 59.232 43.478 2.59 2.29 0.00 3.41
4176 5622 9.128107 CCATGAACAAAAAGTACAATGTATCAC 57.872 33.333 0.00 0.00 0.00 3.06
4226 5672 1.822990 TCTAGGTGCGGTCCACTAAAG 59.177 52.381 0.00 0.00 44.08 1.85
4231 5677 1.668101 CTCCTCTAGGTGCGGTCCAC 61.668 65.000 0.00 0.00 43.90 4.02
4263 5709 6.712998 TCAAAGATCCCGTGAGAAAACATTTA 59.287 34.615 0.00 0.00 0.00 1.40
4318 5765 3.771577 ACTCCGTTTGGAACAGAAGAT 57.228 42.857 0.00 0.00 45.87 2.40
4387 5834 8.847196 ACACTAAAACGTCTCTATATGCATCTA 58.153 33.333 0.19 0.00 0.00 1.98
4393 5840 8.922676 ACAAACACACTAAAACGTCTCTATATG 58.077 33.333 0.00 0.00 0.00 1.78
4424 5871 2.473984 GACTACAAACGGACAGAAACGG 59.526 50.000 0.00 0.00 0.00 4.44
4563 6011 8.342634 GCGTTGACAATATATCTTTGTTGGTAT 58.657 33.333 5.67 0.00 37.43 2.73
4564 6012 7.201661 GGCGTTGACAATATATCTTTGTTGGTA 60.202 37.037 5.67 0.00 37.43 3.25
4565 6013 6.404293 GGCGTTGACAATATATCTTTGTTGGT 60.404 38.462 5.67 0.00 37.43 3.67
4566 6014 5.971202 GGCGTTGACAATATATCTTTGTTGG 59.029 40.000 5.67 0.00 37.43 3.77
4652 6100 9.031537 ACATGCATTGGATTCATATATTGTCAT 57.968 29.630 0.00 0.00 0.00 3.06
4653 6101 8.301002 CACATGCATTGGATTCATATATTGTCA 58.699 33.333 0.00 0.00 0.00 3.58
4654 6102 8.301720 ACACATGCATTGGATTCATATATTGTC 58.698 33.333 0.00 0.00 0.00 3.18
4655 6103 8.085909 CACACATGCATTGGATTCATATATTGT 58.914 33.333 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.