Multiple sequence alignment - TraesCS4A01G089400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G089400 chr4A 100.000 4839 0 0 1 4839 95370567 95375405 0.000000e+00 8937.0
1 TraesCS4A01G089400 chr4A 88.060 67 4 3 3895 3959 464687324 464687260 5.190000e-10 76.8
2 TraesCS4A01G089400 chr4D 96.175 4366 112 30 417 4769 369123438 369119115 0.000000e+00 7086.0
3 TraesCS4A01G089400 chr4B 97.804 2914 61 3 975 3886 454649604 454646692 0.000000e+00 5024.0
4 TraesCS4A01G089400 chr4B 90.684 526 14 11 417 922 454650227 454649717 0.000000e+00 667.0
5 TraesCS4A01G089400 chr4B 88.273 469 22 12 4361 4801 454646187 454645724 9.220000e-147 531.0
6 TraesCS4A01G089400 chr4B 88.462 338 16 7 3938 4266 454646693 454646370 2.110000e-103 387.0
7 TraesCS4A01G089400 chr7D 96.860 414 13 0 1 414 292249879 292249466 0.000000e+00 693.0
8 TraesCS4A01G089400 chr7D 96.394 416 15 0 1 416 506903586 506904001 0.000000e+00 686.0
9 TraesCS4A01G089400 chr5B 96.627 415 14 0 1 415 522838129 522838543 0.000000e+00 689.0
10 TraesCS4A01G089400 chr5B 92.857 56 2 1 3893 3946 496801880 496801935 4.010000e-11 80.5
11 TraesCS4A01G089400 chr3D 95.673 416 18 0 1 416 441402120 441402535 0.000000e+00 669.0
12 TraesCS4A01G089400 chr3B 95.227 419 20 0 1 419 709234846 709234428 0.000000e+00 664.0
13 TraesCS4A01G089400 chr3B 92.701 411 30 0 1 411 4183101 4183511 1.160000e-165 593.0
14 TraesCS4A01G089400 chr3B 92.457 411 29 1 1 411 5039880 5040288 1.940000e-163 586.0
15 TraesCS4A01G089400 chr6A 94.217 415 24 0 1 415 70548424 70548838 6.830000e-178 634.0
16 TraesCS4A01G089400 chr6A 96.078 51 2 0 3895 3945 511530142 511530092 3.100000e-12 84.2
17 TraesCS4A01G089400 chr7A 93.961 414 25 0 1 414 55435412 55435825 1.140000e-175 627.0
18 TraesCS4A01G089400 chr6D 96.078 51 2 0 3895 3945 268067157 268067107 3.100000e-12 84.2
19 TraesCS4A01G089400 chrUn 88.571 70 4 4 3895 3961 135090758 135090826 1.120000e-11 82.4
20 TraesCS4A01G089400 chrUn 88.571 70 4 4 3895 3961 152687614 152687682 1.120000e-11 82.4
21 TraesCS4A01G089400 chr2D 88.571 70 5 2 3876 3942 468765519 468765588 1.120000e-11 82.4
22 TraesCS4A01G089400 chr1B 88.060 67 4 4 3884 3946 656234059 656234125 5.190000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G089400 chr4A 95370567 95375405 4838 False 8937.00 8937 100.00000 1 4839 1 chr4A.!!$F1 4838
1 TraesCS4A01G089400 chr4D 369119115 369123438 4323 True 7086.00 7086 96.17500 417 4769 1 chr4D.!!$R1 4352
2 TraesCS4A01G089400 chr4B 454645724 454650227 4503 True 1652.25 5024 91.30575 417 4801 4 chr4B.!!$R1 4384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.029567 CGAGCGCTAGTCGAGGAAAT 59.970 55.000 11.50 0.00 39.92 2.17 F
382 383 0.034670 GCCAGGAAGCCTCATTGAGT 60.035 55.000 12.54 0.00 0.00 3.41 F
766 788 1.064537 TCCCACCATGTCCATGTGATG 60.065 52.381 6.53 2.48 37.11 3.07 F
813 835 1.524621 CGCGAATTCAGCCCTCCAT 60.525 57.895 0.00 0.00 0.00 3.41 F
2721 2817 2.278332 AGTTCAAGAGGGTTGGAAGC 57.722 50.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1569 1665 1.227380 CGCCCAGGAGGAATCGAAG 60.227 63.158 0.00 0.0 38.24 3.79 R
2238 2334 1.621672 CCTCCTCCAGTGCCTTCTCC 61.622 65.000 0.00 0.0 0.00 3.71 R
2721 2817 1.210931 CTGCCGCAATGTGGTCTTG 59.789 57.895 14.89 0.0 35.34 3.02 R
2769 2865 1.546476 AGCTTTGTCGTCCTCTCGAAT 59.454 47.619 0.00 0.0 41.47 3.34 R
3997 4094 0.106719 CGTTATGCCCCTGGAACCAT 60.107 55.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.671328 CTCATCTTCACAGCATGCAGG 59.329 52.381 21.98 14.16 42.53 4.85
21 22 0.100682 CATCTTCACAGCATGCAGGC 59.899 55.000 21.98 17.09 42.53 4.85
22 23 0.323087 ATCTTCACAGCATGCAGGCA 60.323 50.000 26.87 2.42 42.53 4.75
23 24 0.958876 TCTTCACAGCATGCAGGCAG 60.959 55.000 26.87 20.70 42.53 4.85
24 25 1.228337 TTCACAGCATGCAGGCAGT 60.228 52.632 26.87 21.47 42.53 4.40
25 26 0.824595 TTCACAGCATGCAGGCAGTT 60.825 50.000 26.87 5.78 42.53 3.16
26 27 1.080772 CACAGCATGCAGGCAGTTG 60.081 57.895 26.87 17.41 42.53 3.16
27 28 1.529948 ACAGCATGCAGGCAGTTGT 60.530 52.632 26.87 18.11 42.53 3.32
28 29 1.111116 ACAGCATGCAGGCAGTTGTT 61.111 50.000 26.87 0.00 42.53 2.83
29 30 0.032952 CAGCATGCAGGCAGTTGTTT 59.967 50.000 26.87 0.00 35.83 2.83
30 31 1.270274 CAGCATGCAGGCAGTTGTTTA 59.730 47.619 26.87 0.00 35.83 2.01
31 32 1.270550 AGCATGCAGGCAGTTGTTTAC 59.729 47.619 26.87 0.00 35.83 2.01
32 33 1.000385 GCATGCAGGCAGTTGTTTACA 60.000 47.619 20.11 0.00 0.00 2.41
33 34 2.353011 GCATGCAGGCAGTTGTTTACAT 60.353 45.455 20.11 0.00 0.00 2.29
34 35 3.247442 CATGCAGGCAGTTGTTTACATG 58.753 45.455 0.00 0.00 0.00 3.21
35 36 2.305928 TGCAGGCAGTTGTTTACATGT 58.694 42.857 2.69 2.69 0.00 3.21
36 37 3.481453 TGCAGGCAGTTGTTTACATGTA 58.519 40.909 0.08 0.08 0.00 2.29
37 38 3.885901 TGCAGGCAGTTGTTTACATGTAA 59.114 39.130 14.35 14.35 0.00 2.41
38 39 4.522405 TGCAGGCAGTTGTTTACATGTAAT 59.478 37.500 18.69 0.98 0.00 1.89
39 40 5.707764 TGCAGGCAGTTGTTTACATGTAATA 59.292 36.000 18.69 8.77 0.00 0.98
40 41 6.207614 TGCAGGCAGTTGTTTACATGTAATAA 59.792 34.615 18.69 13.78 0.00 1.40
41 42 7.093988 TGCAGGCAGTTGTTTACATGTAATAAT 60.094 33.333 18.69 4.85 0.00 1.28
42 43 8.402472 GCAGGCAGTTGTTTACATGTAATAATA 58.598 33.333 18.69 1.36 0.00 0.98
43 44 9.935682 CAGGCAGTTGTTTACATGTAATAATAG 57.064 33.333 18.69 13.25 0.00 1.73
44 45 8.621286 AGGCAGTTGTTTACATGTAATAATAGC 58.379 33.333 18.69 19.57 0.00 2.97
45 46 7.860872 GGCAGTTGTTTACATGTAATAATAGCC 59.139 37.037 25.03 25.03 0.00 3.93
46 47 8.621286 GCAGTTGTTTACATGTAATAATAGCCT 58.379 33.333 18.69 8.13 0.00 4.58
48 49 9.338622 AGTTGTTTACATGTAATAATAGCCTCC 57.661 33.333 18.69 4.89 0.00 4.30
49 50 9.116067 GTTGTTTACATGTAATAATAGCCTCCA 57.884 33.333 18.69 0.00 0.00 3.86
50 51 9.688091 TTGTTTACATGTAATAATAGCCTCCAA 57.312 29.630 18.69 2.41 0.00 3.53
51 52 9.337396 TGTTTACATGTAATAATAGCCTCCAAG 57.663 33.333 18.69 0.00 0.00 3.61
52 53 7.979444 TTACATGTAATAATAGCCTCCAAGC 57.021 36.000 14.35 0.00 0.00 4.01
53 54 4.997395 ACATGTAATAATAGCCTCCAAGCG 59.003 41.667 0.00 0.00 38.01 4.68
54 55 4.002906 TGTAATAATAGCCTCCAAGCGG 57.997 45.455 0.00 0.00 38.01 5.52
55 56 3.644265 TGTAATAATAGCCTCCAAGCGGA 59.356 43.478 0.00 0.00 39.79 5.54
65 66 4.063529 CAAGCGGAGTTGGAAGCA 57.936 55.556 0.00 0.00 0.00 3.91
66 67 2.559785 CAAGCGGAGTTGGAAGCAT 58.440 52.632 0.00 0.00 0.00 3.79
67 68 0.169672 CAAGCGGAGTTGGAAGCATG 59.830 55.000 0.00 0.00 0.00 4.06
68 69 1.589716 AAGCGGAGTTGGAAGCATGC 61.590 55.000 10.51 10.51 0.00 4.06
69 70 2.334946 GCGGAGTTGGAAGCATGCA 61.335 57.895 21.98 0.00 0.00 3.96
70 71 1.798735 CGGAGTTGGAAGCATGCAG 59.201 57.895 21.98 0.00 0.00 4.41
71 72 1.651240 CGGAGTTGGAAGCATGCAGG 61.651 60.000 21.98 0.00 0.00 4.85
72 73 1.318158 GGAGTTGGAAGCATGCAGGG 61.318 60.000 21.98 0.00 0.00 4.45
73 74 0.322816 GAGTTGGAAGCATGCAGGGA 60.323 55.000 21.98 0.00 0.00 4.20
74 75 0.323178 AGTTGGAAGCATGCAGGGAG 60.323 55.000 21.98 0.00 0.00 4.30
75 76 1.000521 TTGGAAGCATGCAGGGAGG 60.001 57.895 21.98 0.00 0.00 4.30
76 77 2.123982 GGAAGCATGCAGGGAGGG 60.124 66.667 21.98 0.00 0.00 4.30
77 78 2.683465 GGAAGCATGCAGGGAGGGA 61.683 63.158 21.98 0.00 0.00 4.20
78 79 1.452833 GAAGCATGCAGGGAGGGAC 60.453 63.158 21.98 0.00 0.00 4.46
80 81 2.124403 GCATGCAGGGAGGGACTG 60.124 66.667 14.21 0.00 41.55 3.51
89 90 4.792804 GAGGGACTGCAGCTGGCC 62.793 72.222 16.05 16.05 41.55 5.36
91 92 4.357279 GGGACTGCAGCTGGCCTT 62.357 66.667 22.79 0.00 43.89 4.35
92 93 3.060615 GGACTGCAGCTGGCCTTG 61.061 66.667 17.02 0.65 43.89 3.61
93 94 3.745803 GACTGCAGCTGGCCTTGC 61.746 66.667 17.12 17.12 43.89 4.01
94 95 4.591399 ACTGCAGCTGGCCTTGCA 62.591 61.111 22.67 22.67 43.89 4.08
95 96 4.052229 CTGCAGCTGGCCTTGCAC 62.052 66.667 21.07 13.91 43.89 4.57
99 100 3.636231 AGCTGGCCTTGCACCGTA 61.636 61.111 20.23 0.00 0.00 4.02
100 101 3.431725 GCTGGCCTTGCACCGTAC 61.432 66.667 14.81 0.00 0.00 3.67
101 102 2.031919 CTGGCCTTGCACCGTACA 59.968 61.111 3.32 0.00 0.00 2.90
102 103 1.599518 CTGGCCTTGCACCGTACAA 60.600 57.895 3.32 0.00 0.00 2.41
103 104 1.152943 TGGCCTTGCACCGTACAAA 60.153 52.632 3.32 0.00 0.00 2.83
104 105 1.284715 GGCCTTGCACCGTACAAAC 59.715 57.895 0.00 0.00 0.00 2.93
105 106 1.448922 GGCCTTGCACCGTACAAACA 61.449 55.000 0.00 0.00 0.00 2.83
106 107 0.596082 GCCTTGCACCGTACAAACAT 59.404 50.000 0.00 0.00 0.00 2.71
107 108 1.665735 GCCTTGCACCGTACAAACATG 60.666 52.381 0.00 0.00 0.00 3.21
108 109 1.665735 CCTTGCACCGTACAAACATGC 60.666 52.381 0.00 0.00 37.70 4.06
109 110 0.312416 TTGCACCGTACAAACATGCC 59.688 50.000 0.00 0.00 36.82 4.40
110 111 1.211709 GCACCGTACAAACATGCCC 59.788 57.895 0.00 0.00 33.32 5.36
111 112 1.519751 GCACCGTACAAACATGCCCA 61.520 55.000 0.00 0.00 33.32 5.36
112 113 1.173043 CACCGTACAAACATGCCCAT 58.827 50.000 0.00 0.00 0.00 4.00
113 114 1.132262 CACCGTACAAACATGCCCATC 59.868 52.381 0.00 0.00 0.00 3.51
114 115 1.004277 ACCGTACAAACATGCCCATCT 59.996 47.619 0.00 0.00 0.00 2.90
115 116 2.091541 CCGTACAAACATGCCCATCTT 58.908 47.619 0.00 0.00 0.00 2.40
116 117 2.159393 CCGTACAAACATGCCCATCTTG 60.159 50.000 0.00 0.00 0.00 3.02
117 118 2.159393 CGTACAAACATGCCCATCTTGG 60.159 50.000 0.00 0.00 37.25 3.61
118 119 2.014010 ACAAACATGCCCATCTTGGT 57.986 45.000 0.00 0.00 35.17 3.67
119 120 1.619827 ACAAACATGCCCATCTTGGTG 59.380 47.619 0.00 0.00 35.17 4.17
120 121 1.066716 CAAACATGCCCATCTTGGTGG 60.067 52.381 0.00 0.00 35.17 4.61
121 122 0.409092 AACATGCCCATCTTGGTGGA 59.591 50.000 0.74 0.00 42.02 4.02
122 123 0.033796 ACATGCCCATCTTGGTGGAG 60.034 55.000 0.74 0.00 42.02 3.86
123 124 0.033796 CATGCCCATCTTGGTGGAGT 60.034 55.000 0.74 0.00 42.02 3.85
124 125 0.706433 ATGCCCATCTTGGTGGAGTT 59.294 50.000 0.74 0.00 42.02 3.01
125 126 0.251297 TGCCCATCTTGGTGGAGTTG 60.251 55.000 0.74 0.00 42.02 3.16
126 127 0.967380 GCCCATCTTGGTGGAGTTGG 60.967 60.000 0.74 0.00 42.02 3.77
127 128 0.323725 CCCATCTTGGTGGAGTTGGG 60.324 60.000 0.74 6.63 45.47 4.12
128 129 0.967380 CCATCTTGGTGGAGTTGGGC 60.967 60.000 0.00 0.00 42.02 5.36
129 130 0.251297 CATCTTGGTGGAGTTGGGCA 60.251 55.000 0.00 0.00 0.00 5.36
130 131 0.038744 ATCTTGGTGGAGTTGGGCAG 59.961 55.000 0.00 0.00 0.00 4.85
131 132 1.151450 CTTGGTGGAGTTGGGCAGT 59.849 57.895 0.00 0.00 0.00 4.40
132 133 0.400213 CTTGGTGGAGTTGGGCAGTA 59.600 55.000 0.00 0.00 0.00 2.74
133 134 0.109723 TTGGTGGAGTTGGGCAGTAC 59.890 55.000 0.00 0.00 0.00 2.73
134 135 0.766674 TGGTGGAGTTGGGCAGTACT 60.767 55.000 0.00 0.00 0.00 2.73
135 136 0.321653 GGTGGAGTTGGGCAGTACTG 60.322 60.000 18.93 18.93 0.00 2.74
136 137 0.685097 GTGGAGTTGGGCAGTACTGA 59.315 55.000 27.08 2.48 0.00 3.41
137 138 1.071699 GTGGAGTTGGGCAGTACTGAA 59.928 52.381 27.08 9.21 0.00 3.02
138 139 1.347707 TGGAGTTGGGCAGTACTGAAG 59.652 52.381 27.08 0.03 0.00 3.02
139 140 1.443802 GAGTTGGGCAGTACTGAAGC 58.556 55.000 27.08 11.13 0.00 3.86
140 141 0.320771 AGTTGGGCAGTACTGAAGCG 60.321 55.000 27.08 0.00 0.00 4.68
141 142 1.003839 TTGGGCAGTACTGAAGCGG 60.004 57.895 27.08 0.00 0.00 5.52
142 143 1.764571 TTGGGCAGTACTGAAGCGGT 61.765 55.000 27.08 0.00 0.00 5.68
143 144 1.448013 GGGCAGTACTGAAGCGGTC 60.448 63.158 27.08 6.46 0.00 4.79
144 145 1.592223 GGCAGTACTGAAGCGGTCT 59.408 57.895 27.08 0.00 0.00 3.85
145 146 0.458716 GGCAGTACTGAAGCGGTCTC 60.459 60.000 27.08 4.97 0.00 3.36
146 147 0.798771 GCAGTACTGAAGCGGTCTCG 60.799 60.000 27.08 0.00 39.81 4.04
147 148 0.803117 CAGTACTGAAGCGGTCTCGA 59.197 55.000 18.45 0.00 39.00 4.04
148 149 1.402259 CAGTACTGAAGCGGTCTCGAT 59.598 52.381 18.45 0.00 39.00 3.59
149 150 1.402259 AGTACTGAAGCGGTCTCGATG 59.598 52.381 0.00 0.00 39.00 3.84
150 151 0.100682 TACTGAAGCGGTCTCGATGC 59.899 55.000 0.00 0.00 39.00 3.91
151 152 1.140589 CTGAAGCGGTCTCGATGCT 59.859 57.895 0.00 0.00 41.60 3.79
152 153 1.144565 CTGAAGCGGTCTCGATGCTG 61.145 60.000 2.90 0.00 39.30 4.41
153 154 1.153745 GAAGCGGTCTCGATGCTGT 60.154 57.895 2.90 0.00 39.30 4.40
154 155 1.142778 GAAGCGGTCTCGATGCTGTC 61.143 60.000 2.90 1.13 39.30 3.51
155 156 1.877576 AAGCGGTCTCGATGCTGTCA 61.878 55.000 2.90 0.00 39.30 3.58
156 157 1.875813 GCGGTCTCGATGCTGTCAG 60.876 63.158 0.00 0.00 39.00 3.51
157 158 1.875813 CGGTCTCGATGCTGTCAGC 60.876 63.158 18.32 18.32 39.31 4.26
167 168 3.108289 CTGTCAGCACAGTCGGCG 61.108 66.667 0.00 0.00 44.63 6.46
168 169 3.558099 CTGTCAGCACAGTCGGCGA 62.558 63.158 4.99 4.99 44.63 5.54
169 170 2.355837 GTCAGCACAGTCGGCGAA 60.356 61.111 12.92 0.00 36.08 4.70
170 171 1.738099 GTCAGCACAGTCGGCGAAT 60.738 57.895 12.92 7.97 36.08 3.34
171 172 1.446099 TCAGCACAGTCGGCGAATC 60.446 57.895 12.92 0.00 36.08 2.52
172 173 2.507102 AGCACAGTCGGCGAATCG 60.507 61.111 12.92 8.23 36.08 3.34
184 185 1.991430 CGAATCGCTCACAAGTCCG 59.009 57.895 0.00 0.00 0.00 4.79
185 186 0.456142 CGAATCGCTCACAAGTCCGA 60.456 55.000 0.00 0.00 0.00 4.55
186 187 1.272781 GAATCGCTCACAAGTCCGAG 58.727 55.000 0.00 0.00 32.86 4.63
189 190 3.482783 GCTCACAAGTCCGAGCGC 61.483 66.667 0.00 0.00 44.68 5.92
190 191 2.259818 CTCACAAGTCCGAGCGCT 59.740 61.111 11.27 11.27 0.00 5.92
191 192 1.506718 CTCACAAGTCCGAGCGCTA 59.493 57.895 11.50 0.00 0.00 4.26
192 193 0.524392 CTCACAAGTCCGAGCGCTAG 60.524 60.000 11.50 11.18 0.00 3.42
193 194 1.213013 CACAAGTCCGAGCGCTAGT 59.787 57.895 11.50 0.00 0.00 2.57
194 195 0.798771 CACAAGTCCGAGCGCTAGTC 60.799 60.000 11.50 5.84 0.00 2.59
195 196 1.583967 CAAGTCCGAGCGCTAGTCG 60.584 63.158 11.50 10.75 42.12 4.18
196 197 1.744368 AAGTCCGAGCGCTAGTCGA 60.744 57.895 11.50 0.16 39.92 4.20
197 198 1.707239 AAGTCCGAGCGCTAGTCGAG 61.707 60.000 11.50 4.81 39.92 4.04
198 199 2.895865 TCCGAGCGCTAGTCGAGG 60.896 66.667 11.50 7.55 39.92 4.63
199 200 2.895865 CCGAGCGCTAGTCGAGGA 60.896 66.667 11.50 0.00 39.92 3.71
200 201 2.470362 CCGAGCGCTAGTCGAGGAA 61.470 63.158 11.50 0.00 39.92 3.36
201 202 1.428219 CGAGCGCTAGTCGAGGAAA 59.572 57.895 11.50 0.00 39.92 3.13
202 203 0.029567 CGAGCGCTAGTCGAGGAAAT 59.970 55.000 11.50 0.00 39.92 2.17
203 204 1.263484 CGAGCGCTAGTCGAGGAAATA 59.737 52.381 11.50 0.00 39.92 1.40
204 205 2.652795 GAGCGCTAGTCGAGGAAATAC 58.347 52.381 11.50 0.00 41.67 1.89
205 206 1.002684 AGCGCTAGTCGAGGAAATACG 60.003 52.381 8.99 0.00 41.67 3.06
206 207 1.268437 GCGCTAGTCGAGGAAATACGT 60.268 52.381 0.00 0.00 41.67 3.57
207 208 2.373269 CGCTAGTCGAGGAAATACGTG 58.627 52.381 0.00 0.00 41.67 4.49
208 209 2.728922 GCTAGTCGAGGAAATACGTGG 58.271 52.381 0.00 0.00 0.00 4.94
209 210 2.357009 GCTAGTCGAGGAAATACGTGGA 59.643 50.000 0.00 0.00 0.00 4.02
210 211 3.181493 GCTAGTCGAGGAAATACGTGGAA 60.181 47.826 0.00 0.00 0.00 3.53
211 212 4.499357 GCTAGTCGAGGAAATACGTGGAAT 60.499 45.833 0.00 0.00 0.00 3.01
212 213 5.278169 GCTAGTCGAGGAAATACGTGGAATA 60.278 44.000 0.00 0.00 0.00 1.75
213 214 5.184340 AGTCGAGGAAATACGTGGAATAG 57.816 43.478 0.00 0.00 0.00 1.73
214 215 4.643784 AGTCGAGGAAATACGTGGAATAGT 59.356 41.667 0.00 0.00 0.00 2.12
215 216 5.824624 AGTCGAGGAAATACGTGGAATAGTA 59.175 40.000 0.00 0.00 0.00 1.82
216 217 6.017275 AGTCGAGGAAATACGTGGAATAGTAG 60.017 42.308 0.00 0.00 0.00 2.57
217 218 4.916249 CGAGGAAATACGTGGAATAGTAGC 59.084 45.833 0.00 0.00 0.00 3.58
218 219 5.278364 CGAGGAAATACGTGGAATAGTAGCT 60.278 44.000 0.00 0.00 0.00 3.32
219 220 5.844004 AGGAAATACGTGGAATAGTAGCTG 58.156 41.667 0.00 0.00 0.00 4.24
220 221 5.363005 AGGAAATACGTGGAATAGTAGCTGT 59.637 40.000 0.00 0.00 0.00 4.40
221 222 6.047231 GGAAATACGTGGAATAGTAGCTGTT 58.953 40.000 0.00 0.00 0.00 3.16
222 223 6.018994 GGAAATACGTGGAATAGTAGCTGTTG 60.019 42.308 0.00 0.00 0.00 3.33
223 224 5.847111 ATACGTGGAATAGTAGCTGTTGA 57.153 39.130 0.00 0.00 0.00 3.18
224 225 4.530710 ACGTGGAATAGTAGCTGTTGAA 57.469 40.909 0.00 0.00 0.00 2.69
225 226 5.086104 ACGTGGAATAGTAGCTGTTGAAT 57.914 39.130 0.00 0.00 0.00 2.57
226 227 5.109903 ACGTGGAATAGTAGCTGTTGAATC 58.890 41.667 0.00 0.00 0.00 2.52
227 228 5.109210 CGTGGAATAGTAGCTGTTGAATCA 58.891 41.667 0.00 0.00 0.00 2.57
228 229 5.580691 CGTGGAATAGTAGCTGTTGAATCAA 59.419 40.000 0.00 0.00 0.00 2.57
229 230 6.237942 CGTGGAATAGTAGCTGTTGAATCAAG 60.238 42.308 0.00 0.00 0.00 3.02
230 231 6.037610 GTGGAATAGTAGCTGTTGAATCAAGG 59.962 42.308 0.00 0.00 0.00 3.61
231 232 5.529060 GGAATAGTAGCTGTTGAATCAAGGG 59.471 44.000 0.00 0.00 0.00 3.95
232 233 5.957771 ATAGTAGCTGTTGAATCAAGGGA 57.042 39.130 0.00 0.00 0.00 4.20
233 234 4.213564 AGTAGCTGTTGAATCAAGGGAG 57.786 45.455 0.00 0.00 0.00 4.30
234 235 3.840666 AGTAGCTGTTGAATCAAGGGAGA 59.159 43.478 0.00 0.00 0.00 3.71
235 236 4.472833 AGTAGCTGTTGAATCAAGGGAGAT 59.527 41.667 0.00 0.00 0.00 2.75
236 237 4.313020 AGCTGTTGAATCAAGGGAGATT 57.687 40.909 0.00 0.00 40.75 2.40
237 238 4.670765 AGCTGTTGAATCAAGGGAGATTT 58.329 39.130 0.00 0.00 38.30 2.17
238 239 4.704057 AGCTGTTGAATCAAGGGAGATTTC 59.296 41.667 0.00 0.00 38.30 2.17
239 240 4.142293 GCTGTTGAATCAAGGGAGATTTCC 60.142 45.833 0.00 0.00 43.23 3.13
240 241 5.259632 CTGTTGAATCAAGGGAGATTTCCT 58.740 41.667 1.74 0.00 43.49 3.36
241 242 5.644188 TGTTGAATCAAGGGAGATTTCCTT 58.356 37.500 1.74 0.00 44.76 3.36
242 243 6.077322 TGTTGAATCAAGGGAGATTTCCTTT 58.923 36.000 1.74 0.00 43.04 3.11
243 244 6.554605 TGTTGAATCAAGGGAGATTTCCTTTT 59.445 34.615 1.74 0.00 39.58 2.27
244 245 6.840780 TGAATCAAGGGAGATTTCCTTTTC 57.159 37.500 1.74 0.00 39.58 2.29
245 246 6.555711 TGAATCAAGGGAGATTTCCTTTTCT 58.444 36.000 1.74 0.00 39.58 2.52
246 247 6.660949 TGAATCAAGGGAGATTTCCTTTTCTC 59.339 38.462 1.74 0.00 39.58 2.87
247 248 5.582950 TCAAGGGAGATTTCCTTTTCTCA 57.417 39.130 1.74 0.00 39.58 3.27
248 249 6.144845 TCAAGGGAGATTTCCTTTTCTCAT 57.855 37.500 1.74 0.00 39.58 2.90
249 250 7.270832 TCAAGGGAGATTTCCTTTTCTCATA 57.729 36.000 1.74 0.00 39.58 2.15
250 251 7.876371 TCAAGGGAGATTTCCTTTTCTCATAT 58.124 34.615 1.74 0.00 39.58 1.78
251 252 8.339247 TCAAGGGAGATTTCCTTTTCTCATATT 58.661 33.333 1.74 0.00 39.58 1.28
252 253 9.632638 CAAGGGAGATTTCCTTTTCTCATATTA 57.367 33.333 1.74 0.00 39.58 0.98
253 254 9.859152 AAGGGAGATTTCCTTTTCTCATATTAG 57.141 33.333 1.74 0.00 39.58 1.73
254 255 9.008584 AGGGAGATTTCCTTTTCTCATATTAGT 57.991 33.333 1.74 0.00 43.49 2.24
280 281 8.354011 AGATCACAAAATAATACTAGTCACGC 57.646 34.615 0.00 0.00 0.00 5.34
281 282 7.979537 AGATCACAAAATAATACTAGTCACGCA 59.020 33.333 0.00 0.00 0.00 5.24
282 283 7.285783 TCACAAAATAATACTAGTCACGCAC 57.714 36.000 0.00 0.00 0.00 5.34
283 284 7.094631 TCACAAAATAATACTAGTCACGCACT 58.905 34.615 0.00 0.00 39.41 4.40
284 285 7.274904 TCACAAAATAATACTAGTCACGCACTC 59.725 37.037 0.00 0.00 36.43 3.51
285 286 6.252869 ACAAAATAATACTAGTCACGCACTCG 59.747 38.462 0.00 0.00 36.43 4.18
286 287 2.190325 AATACTAGTCACGCACTCGC 57.810 50.000 0.00 0.00 39.84 5.03
287 288 0.381089 ATACTAGTCACGCACTCGCC 59.619 55.000 0.00 0.00 39.84 5.54
288 289 1.974249 TACTAGTCACGCACTCGCCG 61.974 60.000 0.00 0.00 39.84 6.46
289 290 4.771356 TAGTCACGCACTCGCCGC 62.771 66.667 0.00 0.00 39.84 6.53
292 293 4.045771 TCACGCACTCGCCGCTTA 62.046 61.111 0.00 0.00 39.84 3.09
293 294 2.885644 CACGCACTCGCCGCTTAT 60.886 61.111 0.00 0.00 39.84 1.73
294 295 2.885644 ACGCACTCGCCGCTTATG 60.886 61.111 0.00 0.00 39.84 1.90
295 296 3.630148 CGCACTCGCCGCTTATGG 61.630 66.667 0.00 0.00 33.11 2.74
296 297 3.272334 GCACTCGCCGCTTATGGG 61.272 66.667 0.00 0.00 0.00 4.00
325 326 4.264638 GCGCACGGCTGTTTGGTT 62.265 61.111 0.30 0.00 39.11 3.67
326 327 2.899044 GCGCACGGCTGTTTGGTTA 61.899 57.895 0.30 0.00 39.11 2.85
327 328 1.082366 CGCACGGCTGTTTGGTTAC 60.082 57.895 0.00 0.00 0.00 2.50
328 329 1.082366 GCACGGCTGTTTGGTTACG 60.082 57.895 0.00 0.00 0.00 3.18
329 330 1.500512 GCACGGCTGTTTGGTTACGA 61.501 55.000 0.00 0.00 0.00 3.43
330 331 1.153353 CACGGCTGTTTGGTTACGAT 58.847 50.000 0.00 0.00 0.00 3.73
331 332 1.127951 CACGGCTGTTTGGTTACGATC 59.872 52.381 0.00 0.00 0.00 3.69
332 333 0.368907 CGGCTGTTTGGTTACGATCG 59.631 55.000 14.88 14.88 0.00 3.69
333 334 0.725117 GGCTGTTTGGTTACGATCGG 59.275 55.000 20.98 1.23 0.00 4.18
334 335 0.725117 GCTGTTTGGTTACGATCGGG 59.275 55.000 20.98 0.00 0.00 5.14
335 336 1.673626 GCTGTTTGGTTACGATCGGGA 60.674 52.381 20.98 3.70 0.00 5.14
336 337 2.901249 CTGTTTGGTTACGATCGGGAT 58.099 47.619 20.98 0.30 0.00 3.85
337 338 3.267483 CTGTTTGGTTACGATCGGGATT 58.733 45.455 20.98 0.00 0.00 3.01
338 339 4.435425 CTGTTTGGTTACGATCGGGATTA 58.565 43.478 20.98 0.00 0.00 1.75
339 340 4.183101 TGTTTGGTTACGATCGGGATTAC 58.817 43.478 20.98 9.11 0.00 1.89
340 341 4.183101 GTTTGGTTACGATCGGGATTACA 58.817 43.478 20.98 7.66 0.00 2.41
341 342 3.441496 TGGTTACGATCGGGATTACAC 57.559 47.619 20.98 4.73 0.00 2.90
342 343 3.025978 TGGTTACGATCGGGATTACACT 58.974 45.455 20.98 0.00 0.00 3.55
343 344 3.181484 TGGTTACGATCGGGATTACACTG 60.181 47.826 20.98 0.00 0.00 3.66
344 345 2.787601 TACGATCGGGATTACACTGC 57.212 50.000 20.98 0.00 0.00 4.40
345 346 0.821517 ACGATCGGGATTACACTGCA 59.178 50.000 20.98 0.00 0.00 4.41
346 347 1.412710 ACGATCGGGATTACACTGCAT 59.587 47.619 20.98 0.00 0.00 3.96
347 348 2.158957 ACGATCGGGATTACACTGCATT 60.159 45.455 20.98 0.00 0.00 3.56
348 349 2.221749 CGATCGGGATTACACTGCATTG 59.778 50.000 7.38 1.95 0.00 2.82
349 350 2.779755 TCGGGATTACACTGCATTGT 57.220 45.000 14.59 14.59 0.00 2.71
350 351 3.897141 TCGGGATTACACTGCATTGTA 57.103 42.857 12.47 12.47 0.00 2.41
351 352 4.209307 TCGGGATTACACTGCATTGTAA 57.791 40.909 25.97 25.97 44.17 2.41
352 353 4.580868 TCGGGATTACACTGCATTGTAAA 58.419 39.130 27.06 12.35 43.47 2.01
353 354 4.393680 TCGGGATTACACTGCATTGTAAAC 59.606 41.667 27.06 24.15 43.47 2.01
354 355 4.438200 CGGGATTACACTGCATTGTAAACC 60.438 45.833 31.48 31.48 46.62 3.27
355 356 4.705023 GGGATTACACTGCATTGTAAACCT 59.295 41.667 34.48 21.26 46.57 3.50
356 357 5.185056 GGGATTACACTGCATTGTAAACCTT 59.815 40.000 34.48 21.00 46.57 3.50
357 358 6.295067 GGGATTACACTGCATTGTAAACCTTT 60.295 38.462 34.48 20.73 46.57 3.11
358 359 6.806739 GGATTACACTGCATTGTAAACCTTTC 59.193 38.462 31.74 23.38 45.13 2.62
359 360 6.701145 TTACACTGCATTGTAAACCTTTCA 57.299 33.333 22.91 2.65 38.69 2.69
360 361 5.186996 ACACTGCATTGTAAACCTTTCAG 57.813 39.130 8.09 0.00 0.00 3.02
361 362 4.887071 ACACTGCATTGTAAACCTTTCAGA 59.113 37.500 8.09 0.00 0.00 3.27
362 363 5.009010 ACACTGCATTGTAAACCTTTCAGAG 59.991 40.000 8.09 0.00 0.00 3.35
371 372 3.566130 CCTTTCAGAGGCCAGGAAG 57.434 57.895 5.01 4.61 39.09 3.46
372 373 0.679321 CCTTTCAGAGGCCAGGAAGC 60.679 60.000 5.01 0.00 39.09 3.86
381 382 2.791170 GCCAGGAAGCCTCATTGAG 58.209 57.895 6.70 6.70 0.00 3.02
382 383 0.034670 GCCAGGAAGCCTCATTGAGT 60.035 55.000 12.54 0.00 0.00 3.41
383 384 1.615384 GCCAGGAAGCCTCATTGAGTT 60.615 52.381 12.54 1.31 0.00 3.01
384 385 2.356125 GCCAGGAAGCCTCATTGAGTTA 60.356 50.000 12.54 0.00 0.00 2.24
385 386 3.873801 GCCAGGAAGCCTCATTGAGTTAA 60.874 47.826 12.54 0.00 0.00 2.01
386 387 4.530875 CCAGGAAGCCTCATTGAGTTAAT 58.469 43.478 12.54 0.00 0.00 1.40
387 388 4.337555 CCAGGAAGCCTCATTGAGTTAATG 59.662 45.833 12.54 1.23 46.09 1.90
404 405 8.889717 TGAGTTAATGAAATCTTCGTTTATCCC 58.110 33.333 0.00 0.00 39.48 3.85
405 406 7.916552 AGTTAATGAAATCTTCGTTTATCCCG 58.083 34.615 0.00 0.00 39.48 5.14
406 407 4.813296 ATGAAATCTTCGTTTATCCCGC 57.187 40.909 0.00 0.00 0.00 6.13
407 408 3.601435 TGAAATCTTCGTTTATCCCGCA 58.399 40.909 0.00 0.00 0.00 5.69
408 409 4.004314 TGAAATCTTCGTTTATCCCGCAA 58.996 39.130 0.00 0.00 0.00 4.85
409 410 4.456222 TGAAATCTTCGTTTATCCCGCAAA 59.544 37.500 0.00 0.00 0.00 3.68
410 411 5.048643 TGAAATCTTCGTTTATCCCGCAAAA 60.049 36.000 0.00 0.00 0.00 2.44
411 412 5.379732 AATCTTCGTTTATCCCGCAAAAA 57.620 34.783 0.00 0.00 0.00 1.94
439 440 3.900941 ACATTGGCGATCTTGTTTTGAC 58.099 40.909 0.00 0.00 0.00 3.18
443 444 1.136057 GGCGATCTTGTTTTGACGGAC 60.136 52.381 0.00 0.00 0.00 4.79
487 488 2.747855 GACAAGAAGGCTGCCGGG 60.748 66.667 13.96 4.87 0.00 5.73
601 602 2.719454 GCAAAACATAACGGTGCGG 58.281 52.632 0.00 0.00 0.00 5.69
612 613 4.803426 GGTGCGGGACAGCGAGAG 62.803 72.222 1.14 0.00 40.67 3.20
766 788 1.064537 TCCCACCATGTCCATGTGATG 60.065 52.381 6.53 2.48 37.11 3.07
810 832 1.884926 CCTCGCGAATTCAGCCCTC 60.885 63.158 11.33 0.00 0.00 4.30
811 833 1.884926 CTCGCGAATTCAGCCCTCC 60.885 63.158 11.33 0.00 0.00 4.30
812 834 2.125147 CGCGAATTCAGCCCTCCA 60.125 61.111 0.00 0.00 0.00 3.86
813 835 1.524621 CGCGAATTCAGCCCTCCAT 60.525 57.895 0.00 0.00 0.00 3.41
946 982 4.344865 CACCCTGGTTCCACCCCG 62.345 72.222 0.00 0.00 37.50 5.73
1191 1287 4.651008 GTCGTCGCCGTCAACCCA 62.651 66.667 0.00 0.00 35.01 4.51
1359 1455 2.680352 TTCCTCGCGCTCTCCCTT 60.680 61.111 5.56 0.00 0.00 3.95
1653 1749 2.492090 CTGCGGAAGACCTCCTCG 59.508 66.667 0.00 0.00 42.85 4.63
1654 1750 3.068691 TGCGGAAGACCTCCTCGG 61.069 66.667 0.00 0.00 42.85 4.63
2238 2334 2.895372 GGGGAATACCGTGCAGCG 60.895 66.667 0.00 0.00 41.60 5.18
2636 2732 3.549794 AGACACTGCAGAAAAAGAAGCT 58.450 40.909 23.35 1.31 0.00 3.74
2721 2817 2.278332 AGTTCAAGAGGGTTGGAAGC 57.722 50.000 0.00 0.00 0.00 3.86
2970 3066 1.547372 GGTGCTGTCAAGGCAATGAAT 59.453 47.619 0.00 0.00 41.54 2.57
3196 3292 2.152830 GTGCCGTTTACATACCAACCA 58.847 47.619 0.00 0.00 0.00 3.67
3234 3330 1.753073 CTTGAAATGCATGGGGAGTCC 59.247 52.381 0.00 0.00 0.00 3.85
3348 3444 2.093288 AGACAGTGATCATGTTCGCCAT 60.093 45.455 12.61 2.85 0.00 4.40
3814 3910 2.823959 ACCACATCCCAAATCAATGCT 58.176 42.857 0.00 0.00 0.00 3.79
3831 3927 2.229792 TGCTACCAAGGCTTTGAAGTG 58.770 47.619 10.61 0.00 36.36 3.16
3880 3977 2.026014 AGTTTTGGTTGCGCTGCG 59.974 55.556 19.17 19.17 0.00 5.18
3900 3997 3.065095 GCGTACTACTCCCTCAACACTAG 59.935 52.174 0.00 0.00 0.00 2.57
3901 3998 4.260170 CGTACTACTCCCTCAACACTAGT 58.740 47.826 0.00 0.00 0.00 2.57
3902 3999 4.094590 CGTACTACTCCCTCAACACTAGTG 59.905 50.000 21.44 21.44 0.00 2.74
3904 4001 4.080687 ACTACTCCCTCAACACTAGTGTC 58.919 47.826 28.04 0.00 44.13 3.67
3905 4002 2.958818 ACTCCCTCAACACTAGTGTCA 58.041 47.619 28.04 16.66 44.13 3.58
3906 4003 3.305720 ACTCCCTCAACACTAGTGTCAA 58.694 45.455 28.04 17.57 44.13 3.18
4017 4114 1.453197 GGTTCCAGGGGCATAACGG 60.453 63.158 0.00 0.00 0.00 4.44
4143 4247 2.456989 CAAATCATTCGCATGACAGGC 58.543 47.619 0.00 1.00 42.46 4.85
4175 4279 2.833943 AGTGGCCCAAATTTCTGAATCC 59.166 45.455 0.00 0.00 0.00 3.01
4192 4299 1.675310 CCTCGGATGGCTGTTGCAA 60.675 57.895 0.00 0.00 41.91 4.08
4193 4300 1.033746 CCTCGGATGGCTGTTGCAAT 61.034 55.000 0.59 0.00 41.91 3.56
4217 4324 0.602638 TGGCGCTCTAACTGTGGTTG 60.603 55.000 7.64 0.00 36.92 3.77
4433 4633 8.734030 CGTGTTTCTTTACTTCTTTCAATGTTC 58.266 33.333 0.00 0.00 0.00 3.18
4453 4653 3.955471 TCCCTCCAGCTATTTTCAGTTG 58.045 45.455 0.00 0.00 0.00 3.16
4475 4697 5.304778 TGTTGCTTAGTGCTGAATAACTCA 58.695 37.500 0.00 0.00 43.37 3.41
4496 4718 2.605837 TGCTCTTGTTTCGTGGTACA 57.394 45.000 0.00 0.00 0.00 2.90
4538 4760 1.651987 ACGTGGATTTATCGCTGGTG 58.348 50.000 0.00 0.00 0.00 4.17
4630 4853 3.059386 TTTTCGCCGTCCCATGCC 61.059 61.111 0.00 0.00 0.00 4.40
4712 4936 5.332581 GCTCTTTTTCTTTGTCGGCATTTTC 60.333 40.000 0.00 0.00 0.00 2.29
4721 4945 3.452474 TGTCGGCATTTTCTTTTTGTGG 58.548 40.909 0.00 0.00 0.00 4.17
4801 5025 3.508840 GGCGGGAAGGAATGCGTG 61.509 66.667 0.00 0.00 0.00 5.34
4802 5026 2.746277 GCGGGAAGGAATGCGTGT 60.746 61.111 0.00 0.00 0.00 4.49
4803 5027 2.332654 GCGGGAAGGAATGCGTGTT 61.333 57.895 0.00 0.00 0.00 3.32
4804 5028 1.862602 GCGGGAAGGAATGCGTGTTT 61.863 55.000 0.00 0.00 0.00 2.83
4805 5029 0.596082 CGGGAAGGAATGCGTGTTTT 59.404 50.000 0.00 0.00 0.00 2.43
4806 5030 1.807742 CGGGAAGGAATGCGTGTTTTA 59.192 47.619 0.00 0.00 0.00 1.52
4807 5031 2.413634 CGGGAAGGAATGCGTGTTTTAC 60.414 50.000 0.00 0.00 0.00 2.01
4808 5032 2.094906 GGGAAGGAATGCGTGTTTTACC 60.095 50.000 0.00 0.00 0.00 2.85
4809 5033 2.817844 GGAAGGAATGCGTGTTTTACCT 59.182 45.455 0.00 0.00 0.00 3.08
4810 5034 3.254903 GGAAGGAATGCGTGTTTTACCTT 59.745 43.478 0.00 0.00 38.68 3.50
4811 5035 4.261867 GGAAGGAATGCGTGTTTTACCTTT 60.262 41.667 0.00 0.00 36.58 3.11
4812 5036 4.929819 AGGAATGCGTGTTTTACCTTTT 57.070 36.364 0.00 0.00 0.00 2.27
4813 5037 6.394025 AAGGAATGCGTGTTTTACCTTTTA 57.606 33.333 0.00 0.00 33.31 1.52
4814 5038 6.394025 AGGAATGCGTGTTTTACCTTTTAA 57.606 33.333 0.00 0.00 0.00 1.52
4815 5039 6.807789 AGGAATGCGTGTTTTACCTTTTAAA 58.192 32.000 0.00 0.00 0.00 1.52
4816 5040 7.266400 AGGAATGCGTGTTTTACCTTTTAAAA 58.734 30.769 0.00 0.00 0.00 1.52
4817 5041 7.929245 AGGAATGCGTGTTTTACCTTTTAAAAT 59.071 29.630 0.09 0.00 0.00 1.82
4818 5042 8.552865 GGAATGCGTGTTTTACCTTTTAAAATT 58.447 29.630 0.09 0.00 0.00 1.82
4819 5043 9.923786 GAATGCGTGTTTTACCTTTTAAAATTT 57.076 25.926 0.09 0.00 0.00 1.82
4822 5046 9.362539 TGCGTGTTTTACCTTTTAAAATTTACA 57.637 25.926 0.09 0.00 0.00 2.41
4838 5062 8.757164 AAAATTTACAAATCGATCCTTTGTCC 57.243 30.769 16.61 0.00 43.72 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.671328 CCTGCATGCTGTGAAGATGAG 59.329 52.381 20.33 3.23 35.21 2.90
1 2 1.746470 CCTGCATGCTGTGAAGATGA 58.254 50.000 20.33 0.00 35.21 2.92
2 3 0.100682 GCCTGCATGCTGTGAAGATG 59.899 55.000 20.33 4.90 35.21 2.90
3 4 0.323087 TGCCTGCATGCTGTGAAGAT 60.323 50.000 20.33 0.00 35.21 2.40
4 5 0.958876 CTGCCTGCATGCTGTGAAGA 60.959 55.000 20.33 0.00 35.21 2.87
5 6 1.241990 ACTGCCTGCATGCTGTGAAG 61.242 55.000 22.12 17.10 41.18 3.02
6 7 0.824595 AACTGCCTGCATGCTGTGAA 60.825 50.000 23.14 6.42 41.77 3.18
7 8 1.228337 AACTGCCTGCATGCTGTGA 60.228 52.632 23.14 5.96 41.77 3.58
8 9 1.080772 CAACTGCCTGCATGCTGTG 60.081 57.895 23.14 14.81 41.77 3.66
9 10 1.111116 AACAACTGCCTGCATGCTGT 61.111 50.000 20.33 18.33 44.06 4.40
10 11 0.032952 AAACAACTGCCTGCATGCTG 59.967 50.000 20.33 18.55 36.39 4.41
11 12 1.270550 GTAAACAACTGCCTGCATGCT 59.729 47.619 20.33 0.00 0.00 3.79
12 13 1.000385 TGTAAACAACTGCCTGCATGC 60.000 47.619 11.82 11.82 0.00 4.06
13 14 3.247442 CATGTAAACAACTGCCTGCATG 58.753 45.455 0.00 0.00 0.00 4.06
14 15 2.892852 ACATGTAAACAACTGCCTGCAT 59.107 40.909 0.00 0.00 0.00 3.96
15 16 2.305928 ACATGTAAACAACTGCCTGCA 58.694 42.857 0.00 0.00 0.00 4.41
16 17 4.497473 TTACATGTAAACAACTGCCTGC 57.503 40.909 15.92 0.00 0.00 4.85
17 18 9.935682 CTATTATTACATGTAAACAACTGCCTG 57.064 33.333 21.57 2.60 0.00 4.85
18 19 8.621286 GCTATTATTACATGTAAACAACTGCCT 58.379 33.333 21.57 5.24 0.00 4.75
19 20 7.860872 GGCTATTATTACATGTAAACAACTGCC 59.139 37.037 21.57 23.89 0.00 4.85
20 21 8.621286 AGGCTATTATTACATGTAAACAACTGC 58.379 33.333 21.57 20.52 0.00 4.40
22 23 9.338622 GGAGGCTATTATTACATGTAAACAACT 57.661 33.333 21.57 12.99 0.00 3.16
23 24 9.116067 TGGAGGCTATTATTACATGTAAACAAC 57.884 33.333 21.57 9.58 0.00 3.32
24 25 9.688091 TTGGAGGCTATTATTACATGTAAACAA 57.312 29.630 21.57 17.61 0.00 2.83
25 26 9.337396 CTTGGAGGCTATTATTACATGTAAACA 57.663 33.333 21.57 11.75 0.00 2.83
26 27 8.290325 GCTTGGAGGCTATTATTACATGTAAAC 58.710 37.037 21.57 7.71 0.00 2.01
27 28 7.172532 CGCTTGGAGGCTATTATTACATGTAAA 59.827 37.037 21.57 7.39 0.00 2.01
28 29 6.649141 CGCTTGGAGGCTATTATTACATGTAA 59.351 38.462 20.14 20.14 0.00 2.41
29 30 6.163476 CGCTTGGAGGCTATTATTACATGTA 58.837 40.000 0.08 0.08 0.00 2.29
30 31 4.997395 CGCTTGGAGGCTATTATTACATGT 59.003 41.667 2.69 2.69 0.00 3.21
31 32 4.393062 CCGCTTGGAGGCTATTATTACATG 59.607 45.833 0.00 0.00 33.02 3.21
32 33 4.286032 TCCGCTTGGAGGCTATTATTACAT 59.714 41.667 0.00 0.00 36.65 2.29
33 34 3.644265 TCCGCTTGGAGGCTATTATTACA 59.356 43.478 0.00 0.00 36.65 2.41
34 35 4.267349 TCCGCTTGGAGGCTATTATTAC 57.733 45.455 0.00 0.00 36.65 1.89
46 47 1.302511 GCTTCCAACTCCGCTTGGA 60.303 57.895 1.16 1.16 46.69 3.53
47 48 0.962356 ATGCTTCCAACTCCGCTTGG 60.962 55.000 0.00 0.00 42.04 3.61
48 49 0.169672 CATGCTTCCAACTCCGCTTG 59.830 55.000 0.00 0.00 0.00 4.01
49 50 1.589716 GCATGCTTCCAACTCCGCTT 61.590 55.000 11.37 0.00 0.00 4.68
50 51 2.042831 GCATGCTTCCAACTCCGCT 61.043 57.895 11.37 0.00 0.00 5.52
51 52 2.262471 CTGCATGCTTCCAACTCCGC 62.262 60.000 20.33 0.00 0.00 5.54
52 53 1.651240 CCTGCATGCTTCCAACTCCG 61.651 60.000 20.33 0.00 0.00 4.63
53 54 1.318158 CCCTGCATGCTTCCAACTCC 61.318 60.000 20.33 0.00 0.00 3.85
54 55 0.322816 TCCCTGCATGCTTCCAACTC 60.323 55.000 20.33 0.00 0.00 3.01
55 56 0.323178 CTCCCTGCATGCTTCCAACT 60.323 55.000 20.33 0.00 0.00 3.16
56 57 1.318158 CCTCCCTGCATGCTTCCAAC 61.318 60.000 20.33 0.00 0.00 3.77
57 58 1.000521 CCTCCCTGCATGCTTCCAA 60.001 57.895 20.33 0.00 0.00 3.53
58 59 2.679092 CCTCCCTGCATGCTTCCA 59.321 61.111 20.33 0.00 0.00 3.53
59 60 2.123982 CCCTCCCTGCATGCTTCC 60.124 66.667 20.33 0.00 0.00 3.46
60 61 1.452833 GTCCCTCCCTGCATGCTTC 60.453 63.158 20.33 0.00 0.00 3.86
61 62 1.927527 AGTCCCTCCCTGCATGCTT 60.928 57.895 20.33 0.00 0.00 3.91
62 63 2.285969 AGTCCCTCCCTGCATGCT 60.286 61.111 20.33 0.00 0.00 3.79
63 64 2.124403 CAGTCCCTCCCTGCATGC 60.124 66.667 11.82 11.82 0.00 4.06
68 69 3.007920 AGCTGCAGTCCCTCCCTG 61.008 66.667 16.64 0.00 0.00 4.45
69 70 3.007920 CAGCTGCAGTCCCTCCCT 61.008 66.667 16.64 0.00 0.00 4.20
70 71 4.106925 CCAGCTGCAGTCCCTCCC 62.107 72.222 16.64 0.00 0.00 4.30
71 72 4.792804 GCCAGCTGCAGTCCCTCC 62.793 72.222 16.64 0.00 40.77 4.30
72 73 4.792804 GGCCAGCTGCAGTCCCTC 62.793 72.222 16.64 0.00 43.89 4.30
74 75 4.357279 AAGGCCAGCTGCAGTCCC 62.357 66.667 16.64 10.42 43.89 4.46
75 76 3.060615 CAAGGCCAGCTGCAGTCC 61.061 66.667 16.64 11.45 43.89 3.85
76 77 3.745803 GCAAGGCCAGCTGCAGTC 61.746 66.667 16.64 7.83 43.89 3.51
77 78 4.591399 TGCAAGGCCAGCTGCAGT 62.591 61.111 19.76 0.00 43.44 4.40
81 82 3.899981 TACGGTGCAAGGCCAGCTG 62.900 63.158 19.26 6.78 0.00 4.24
82 83 3.636231 TACGGTGCAAGGCCAGCT 61.636 61.111 19.26 3.75 0.00 4.24
83 84 3.431725 GTACGGTGCAAGGCCAGC 61.432 66.667 5.01 9.78 0.00 4.85
84 85 1.169661 TTTGTACGGTGCAAGGCCAG 61.170 55.000 5.01 0.00 0.00 4.85
85 86 1.152943 TTTGTACGGTGCAAGGCCA 60.153 52.632 5.01 0.00 0.00 5.36
86 87 1.284715 GTTTGTACGGTGCAAGGCC 59.715 57.895 11.38 0.00 0.00 5.19
87 88 0.596082 ATGTTTGTACGGTGCAAGGC 59.404 50.000 11.38 9.46 0.00 4.35
88 89 1.665735 GCATGTTTGTACGGTGCAAGG 60.666 52.381 11.38 5.09 38.00 3.61
89 90 1.665735 GGCATGTTTGTACGGTGCAAG 60.666 52.381 11.38 2.22 39.11 4.01
90 91 0.312416 GGCATGTTTGTACGGTGCAA 59.688 50.000 7.59 7.59 39.11 4.08
91 92 1.519751 GGGCATGTTTGTACGGTGCA 61.520 55.000 0.00 0.00 39.11 4.57
92 93 1.211709 GGGCATGTTTGTACGGTGC 59.788 57.895 0.00 0.00 37.62 5.01
93 94 1.132262 GATGGGCATGTTTGTACGGTG 59.868 52.381 0.00 0.00 0.00 4.94
94 95 1.004277 AGATGGGCATGTTTGTACGGT 59.996 47.619 0.00 0.00 0.00 4.83
95 96 1.750193 AGATGGGCATGTTTGTACGG 58.250 50.000 0.00 0.00 0.00 4.02
96 97 2.159393 CCAAGATGGGCATGTTTGTACG 60.159 50.000 0.00 0.00 32.67 3.67
97 98 2.825532 ACCAAGATGGGCATGTTTGTAC 59.174 45.455 0.87 0.00 43.37 2.90
98 99 2.824936 CACCAAGATGGGCATGTTTGTA 59.175 45.455 0.87 0.00 43.37 2.41
99 100 1.619827 CACCAAGATGGGCATGTTTGT 59.380 47.619 0.87 0.00 43.37 2.83
100 101 1.066716 CCACCAAGATGGGCATGTTTG 60.067 52.381 0.87 0.00 43.37 2.93
101 102 1.203162 TCCACCAAGATGGGCATGTTT 60.203 47.619 0.87 0.00 43.37 2.83
102 103 0.409092 TCCACCAAGATGGGCATGTT 59.591 50.000 0.87 0.00 43.37 2.71
103 104 0.033796 CTCCACCAAGATGGGCATGT 60.034 55.000 0.87 0.00 43.37 3.21
104 105 0.033796 ACTCCACCAAGATGGGCATG 60.034 55.000 0.87 0.00 43.37 4.06
105 106 0.706433 AACTCCACCAAGATGGGCAT 59.294 50.000 0.87 0.00 43.37 4.40
106 107 0.251297 CAACTCCACCAAGATGGGCA 60.251 55.000 0.87 0.00 43.37 5.36
107 108 0.967380 CCAACTCCACCAAGATGGGC 60.967 60.000 0.87 0.00 43.37 5.36
108 109 3.271250 CCAACTCCACCAAGATGGG 57.729 57.895 0.87 0.00 43.37 4.00
109 110 0.967380 GCCCAACTCCACCAAGATGG 60.967 60.000 0.00 0.00 45.02 3.51
110 111 0.251297 TGCCCAACTCCACCAAGATG 60.251 55.000 0.00 0.00 0.00 2.90
111 112 0.038744 CTGCCCAACTCCACCAAGAT 59.961 55.000 0.00 0.00 0.00 2.40
112 113 1.352622 ACTGCCCAACTCCACCAAGA 61.353 55.000 0.00 0.00 0.00 3.02
113 114 0.400213 TACTGCCCAACTCCACCAAG 59.600 55.000 0.00 0.00 0.00 3.61
114 115 0.109723 GTACTGCCCAACTCCACCAA 59.890 55.000 0.00 0.00 0.00 3.67
115 116 0.766674 AGTACTGCCCAACTCCACCA 60.767 55.000 0.00 0.00 0.00 4.17
116 117 0.321653 CAGTACTGCCCAACTCCACC 60.322 60.000 10.54 0.00 0.00 4.61
117 118 0.685097 TCAGTACTGCCCAACTCCAC 59.315 55.000 18.45 0.00 0.00 4.02
118 119 1.347707 CTTCAGTACTGCCCAACTCCA 59.652 52.381 18.45 0.00 0.00 3.86
119 120 1.946283 GCTTCAGTACTGCCCAACTCC 60.946 57.143 18.45 0.00 0.00 3.85
120 121 1.443802 GCTTCAGTACTGCCCAACTC 58.556 55.000 18.45 0.00 0.00 3.01
121 122 0.320771 CGCTTCAGTACTGCCCAACT 60.321 55.000 18.45 0.00 0.00 3.16
122 123 1.298859 CCGCTTCAGTACTGCCCAAC 61.299 60.000 18.45 4.78 0.00 3.77
123 124 1.003839 CCGCTTCAGTACTGCCCAA 60.004 57.895 18.45 6.65 0.00 4.12
124 125 2.167398 GACCGCTTCAGTACTGCCCA 62.167 60.000 18.45 3.69 0.00 5.36
125 126 1.448013 GACCGCTTCAGTACTGCCC 60.448 63.158 18.45 7.48 0.00 5.36
126 127 0.458716 GAGACCGCTTCAGTACTGCC 60.459 60.000 18.45 7.83 0.00 4.85
127 128 0.798771 CGAGACCGCTTCAGTACTGC 60.799 60.000 18.45 5.79 0.00 4.40
128 129 0.803117 TCGAGACCGCTTCAGTACTG 59.197 55.000 17.17 17.17 35.37 2.74
129 130 1.402259 CATCGAGACCGCTTCAGTACT 59.598 52.381 0.00 0.00 35.37 2.73
130 131 1.828832 CATCGAGACCGCTTCAGTAC 58.171 55.000 0.00 0.00 35.37 2.73
131 132 0.100682 GCATCGAGACCGCTTCAGTA 59.899 55.000 0.00 0.00 35.37 2.74
132 133 1.153745 GCATCGAGACCGCTTCAGT 60.154 57.895 0.00 0.00 35.37 3.41
133 134 1.140589 AGCATCGAGACCGCTTCAG 59.859 57.895 0.00 0.00 35.37 3.02
134 135 1.153765 CAGCATCGAGACCGCTTCA 60.154 57.895 0.00 0.00 32.48 3.02
135 136 1.142778 GACAGCATCGAGACCGCTTC 61.143 60.000 0.00 0.00 32.48 3.86
136 137 1.153745 GACAGCATCGAGACCGCTT 60.154 57.895 0.00 0.00 32.48 4.68
137 138 2.276863 CTGACAGCATCGAGACCGCT 62.277 60.000 0.00 0.00 36.10 5.52
138 139 1.875813 CTGACAGCATCGAGACCGC 60.876 63.158 0.00 0.00 35.37 5.68
139 140 1.875813 GCTGACAGCATCGAGACCG 60.876 63.158 22.62 0.00 41.89 4.79
140 141 4.100981 GCTGACAGCATCGAGACC 57.899 61.111 22.62 0.00 41.89 3.85
151 152 2.434658 ATTCGCCGACTGTGCTGACA 62.435 55.000 0.00 0.00 0.00 3.58
152 153 1.687494 GATTCGCCGACTGTGCTGAC 61.687 60.000 0.00 0.00 0.00 3.51
153 154 1.446099 GATTCGCCGACTGTGCTGA 60.446 57.895 0.00 0.00 0.00 4.26
154 155 2.792290 CGATTCGCCGACTGTGCTG 61.792 63.158 0.00 0.00 0.00 4.41
155 156 2.507102 CGATTCGCCGACTGTGCT 60.507 61.111 0.00 0.00 0.00 4.40
166 167 0.456142 TCGGACTTGTGAGCGATTCG 60.456 55.000 0.62 0.62 0.00 3.34
167 168 1.272781 CTCGGACTTGTGAGCGATTC 58.727 55.000 0.00 0.00 0.00 2.52
168 169 0.737715 GCTCGGACTTGTGAGCGATT 60.738 55.000 0.00 0.00 47.00 3.34
169 170 1.153745 GCTCGGACTTGTGAGCGAT 60.154 57.895 0.00 0.00 47.00 4.58
170 171 2.258591 GCTCGGACTTGTGAGCGA 59.741 61.111 0.00 0.00 47.00 4.93
173 174 0.524392 CTAGCGCTCGGACTTGTGAG 60.524 60.000 16.34 0.00 35.30 3.51
174 175 1.241990 ACTAGCGCTCGGACTTGTGA 61.242 55.000 16.34 0.00 0.00 3.58
175 176 0.798771 GACTAGCGCTCGGACTTGTG 60.799 60.000 16.34 0.00 0.00 3.33
176 177 1.507174 GACTAGCGCTCGGACTTGT 59.493 57.895 16.34 2.38 0.00 3.16
177 178 1.583967 CGACTAGCGCTCGGACTTG 60.584 63.158 16.34 0.00 0.00 3.16
178 179 1.707239 CTCGACTAGCGCTCGGACTT 61.707 60.000 16.34 0.00 40.61 3.01
179 180 2.125229 TCGACTAGCGCTCGGACT 60.125 61.111 16.34 0.00 40.61 3.85
180 181 2.325166 CTCGACTAGCGCTCGGAC 59.675 66.667 16.34 7.98 40.61 4.79
181 182 2.864378 TTCCTCGACTAGCGCTCGGA 62.864 60.000 16.34 8.79 40.61 4.55
182 183 1.989966 TTTCCTCGACTAGCGCTCGG 61.990 60.000 16.34 11.39 40.61 4.63
183 184 0.029567 ATTTCCTCGACTAGCGCTCG 59.970 55.000 16.34 13.04 40.61 5.03
184 185 2.652795 GTATTTCCTCGACTAGCGCTC 58.347 52.381 16.34 0.00 40.61 5.03
185 186 1.002684 CGTATTTCCTCGACTAGCGCT 60.003 52.381 17.26 17.26 40.61 5.92
186 187 1.268437 ACGTATTTCCTCGACTAGCGC 60.268 52.381 0.00 0.00 40.61 5.92
187 188 2.373269 CACGTATTTCCTCGACTAGCG 58.627 52.381 0.00 0.00 42.69 4.26
188 189 2.357009 TCCACGTATTTCCTCGACTAGC 59.643 50.000 0.00 0.00 0.00 3.42
189 190 4.627611 TTCCACGTATTTCCTCGACTAG 57.372 45.455 0.00 0.00 0.00 2.57
190 191 5.824624 ACTATTCCACGTATTTCCTCGACTA 59.175 40.000 0.00 0.00 0.00 2.59
191 192 4.643784 ACTATTCCACGTATTTCCTCGACT 59.356 41.667 0.00 0.00 0.00 4.18
192 193 4.929781 ACTATTCCACGTATTTCCTCGAC 58.070 43.478 0.00 0.00 0.00 4.20
193 194 5.278169 GCTACTATTCCACGTATTTCCTCGA 60.278 44.000 0.00 0.00 0.00 4.04
194 195 4.916249 GCTACTATTCCACGTATTTCCTCG 59.084 45.833 0.00 0.00 0.00 4.63
195 196 5.921408 CAGCTACTATTCCACGTATTTCCTC 59.079 44.000 0.00 0.00 0.00 3.71
196 197 5.363005 ACAGCTACTATTCCACGTATTTCCT 59.637 40.000 0.00 0.00 0.00 3.36
197 198 5.598769 ACAGCTACTATTCCACGTATTTCC 58.401 41.667 0.00 0.00 0.00 3.13
198 199 6.755141 TCAACAGCTACTATTCCACGTATTTC 59.245 38.462 0.00 0.00 0.00 2.17
199 200 6.636705 TCAACAGCTACTATTCCACGTATTT 58.363 36.000 0.00 0.00 0.00 1.40
200 201 6.216801 TCAACAGCTACTATTCCACGTATT 57.783 37.500 0.00 0.00 0.00 1.89
201 202 5.847111 TCAACAGCTACTATTCCACGTAT 57.153 39.130 0.00 0.00 0.00 3.06
202 203 5.648178 TTCAACAGCTACTATTCCACGTA 57.352 39.130 0.00 0.00 0.00 3.57
203 204 4.530710 TTCAACAGCTACTATTCCACGT 57.469 40.909 0.00 0.00 0.00 4.49
204 205 5.109210 TGATTCAACAGCTACTATTCCACG 58.891 41.667 0.00 0.00 0.00 4.94
205 206 6.037610 CCTTGATTCAACAGCTACTATTCCAC 59.962 42.308 0.00 0.00 0.00 4.02
206 207 6.115446 CCTTGATTCAACAGCTACTATTCCA 58.885 40.000 0.00 0.00 0.00 3.53
207 208 5.529060 CCCTTGATTCAACAGCTACTATTCC 59.471 44.000 0.00 0.00 0.00 3.01
208 209 6.349300 TCCCTTGATTCAACAGCTACTATTC 58.651 40.000 0.00 0.00 0.00 1.75
209 210 6.156949 TCTCCCTTGATTCAACAGCTACTATT 59.843 38.462 0.00 0.00 0.00 1.73
210 211 5.663106 TCTCCCTTGATTCAACAGCTACTAT 59.337 40.000 0.00 0.00 0.00 2.12
211 212 5.023452 TCTCCCTTGATTCAACAGCTACTA 58.977 41.667 0.00 0.00 0.00 1.82
212 213 3.840666 TCTCCCTTGATTCAACAGCTACT 59.159 43.478 0.00 0.00 0.00 2.57
213 214 4.207891 TCTCCCTTGATTCAACAGCTAC 57.792 45.455 0.00 0.00 0.00 3.58
214 215 5.441718 AATCTCCCTTGATTCAACAGCTA 57.558 39.130 0.00 0.00 31.72 3.32
215 216 4.313020 AATCTCCCTTGATTCAACAGCT 57.687 40.909 0.00 0.00 31.72 4.24
216 217 4.142293 GGAAATCTCCCTTGATTCAACAGC 60.142 45.833 0.00 0.00 35.82 4.40
217 218 5.259632 AGGAAATCTCCCTTGATTCAACAG 58.740 41.667 0.00 0.00 43.64 3.16
218 219 5.261040 AGGAAATCTCCCTTGATTCAACA 57.739 39.130 0.00 0.00 43.64 3.33
219 220 6.596309 AAAGGAAATCTCCCTTGATTCAAC 57.404 37.500 0.00 0.00 42.82 3.18
220 221 7.012607 AGAAAAGGAAATCTCCCTTGATTCAA 58.987 34.615 0.00 0.00 42.82 2.69
221 222 6.555711 AGAAAAGGAAATCTCCCTTGATTCA 58.444 36.000 0.00 0.00 42.82 2.57
222 223 6.660949 TGAGAAAAGGAAATCTCCCTTGATTC 59.339 38.462 0.00 0.00 42.82 2.52
223 224 6.555711 TGAGAAAAGGAAATCTCCCTTGATT 58.444 36.000 0.00 0.00 42.82 2.57
224 225 6.144845 TGAGAAAAGGAAATCTCCCTTGAT 57.855 37.500 0.00 0.00 42.82 2.57
225 226 5.582950 TGAGAAAAGGAAATCTCCCTTGA 57.417 39.130 0.00 0.00 42.82 3.02
226 227 8.530804 AATATGAGAAAAGGAAATCTCCCTTG 57.469 34.615 0.00 0.00 42.82 3.61
227 228 9.859152 CTAATATGAGAAAAGGAAATCTCCCTT 57.141 33.333 0.00 0.00 45.36 3.95
228 229 9.008584 ACTAATATGAGAAAAGGAAATCTCCCT 57.991 33.333 0.00 0.00 43.64 4.20
254 255 9.459640 GCGTGACTAGTATTATTTTGTGATCTA 57.540 33.333 0.00 0.00 0.00 1.98
255 256 7.979537 TGCGTGACTAGTATTATTTTGTGATCT 59.020 33.333 0.00 0.00 0.00 2.75
256 257 8.056571 GTGCGTGACTAGTATTATTTTGTGATC 58.943 37.037 0.00 0.00 0.00 2.92
257 258 7.764443 AGTGCGTGACTAGTATTATTTTGTGAT 59.236 33.333 0.00 0.00 30.86 3.06
258 259 7.094631 AGTGCGTGACTAGTATTATTTTGTGA 58.905 34.615 0.00 0.00 30.86 3.58
259 260 7.290857 AGTGCGTGACTAGTATTATTTTGTG 57.709 36.000 0.00 0.00 30.86 3.33
260 261 6.252869 CGAGTGCGTGACTAGTATTATTTTGT 59.747 38.462 0.00 0.00 33.83 2.83
261 262 6.628187 CGAGTGCGTGACTAGTATTATTTTG 58.372 40.000 0.00 0.00 33.83 2.44
262 263 5.231568 GCGAGTGCGTGACTAGTATTATTTT 59.768 40.000 0.00 0.00 40.36 1.82
263 264 4.738740 GCGAGTGCGTGACTAGTATTATTT 59.261 41.667 0.00 0.00 40.36 1.40
264 265 4.288531 GCGAGTGCGTGACTAGTATTATT 58.711 43.478 0.00 0.00 40.36 1.40
265 266 3.304525 GGCGAGTGCGTGACTAGTATTAT 60.305 47.826 0.00 0.00 44.10 1.28
266 267 2.032550 GGCGAGTGCGTGACTAGTATTA 59.967 50.000 0.00 0.00 44.10 0.98
267 268 1.202268 GGCGAGTGCGTGACTAGTATT 60.202 52.381 0.00 0.00 44.10 1.89
268 269 0.381089 GGCGAGTGCGTGACTAGTAT 59.619 55.000 0.00 0.00 44.10 2.12
269 270 1.798735 GGCGAGTGCGTGACTAGTA 59.201 57.895 0.00 0.00 44.10 1.82
270 271 2.567049 GGCGAGTGCGTGACTAGT 59.433 61.111 0.00 0.00 44.10 2.57
271 272 2.577112 CGGCGAGTGCGTGACTAG 60.577 66.667 0.00 0.00 44.10 2.57
272 273 4.771356 GCGGCGAGTGCGTGACTA 62.771 66.667 12.98 0.00 44.10 2.59
275 276 3.350909 ATAAGCGGCGAGTGCGTGA 62.351 57.895 12.98 0.00 44.10 4.35
276 277 2.885644 ATAAGCGGCGAGTGCGTG 60.886 61.111 12.98 0.00 44.10 5.34
277 278 2.885644 CATAAGCGGCGAGTGCGT 60.886 61.111 12.98 0.00 44.10 5.24
278 279 3.630148 CCATAAGCGGCGAGTGCG 61.630 66.667 12.98 0.00 44.10 5.34
279 280 3.272334 CCCATAAGCGGCGAGTGC 61.272 66.667 12.98 0.00 41.71 4.40
280 281 3.272334 GCCCATAAGCGGCGAGTG 61.272 66.667 12.98 2.41 36.47 3.51
288 289 3.601277 GGGTACTACGCCCATAAGC 57.399 57.895 0.00 0.00 45.40 3.09
308 309 2.899044 TAACCAAACAGCCGTGCGC 61.899 57.895 0.00 0.00 37.98 6.09
309 310 1.082366 GTAACCAAACAGCCGTGCG 60.082 57.895 0.00 0.00 0.00 5.34
310 311 1.082366 CGTAACCAAACAGCCGTGC 60.082 57.895 0.00 0.00 0.00 5.34
311 312 1.127951 GATCGTAACCAAACAGCCGTG 59.872 52.381 0.00 0.00 0.00 4.94
312 313 1.435577 GATCGTAACCAAACAGCCGT 58.564 50.000 0.00 0.00 0.00 5.68
313 314 0.368907 CGATCGTAACCAAACAGCCG 59.631 55.000 7.03 0.00 0.00 5.52
314 315 0.725117 CCGATCGTAACCAAACAGCC 59.275 55.000 15.09 0.00 0.00 4.85
315 316 0.725117 CCCGATCGTAACCAAACAGC 59.275 55.000 15.09 0.00 0.00 4.40
316 317 2.373540 TCCCGATCGTAACCAAACAG 57.626 50.000 15.09 0.00 0.00 3.16
317 318 3.337694 AATCCCGATCGTAACCAAACA 57.662 42.857 15.09 0.00 0.00 2.83
318 319 4.033243 GTGTAATCCCGATCGTAACCAAAC 59.967 45.833 15.09 4.10 0.00 2.93
319 320 4.081531 AGTGTAATCCCGATCGTAACCAAA 60.082 41.667 15.09 0.00 0.00 3.28
320 321 3.448301 AGTGTAATCCCGATCGTAACCAA 59.552 43.478 15.09 0.00 0.00 3.67
321 322 3.025978 AGTGTAATCCCGATCGTAACCA 58.974 45.455 15.09 0.00 0.00 3.67
322 323 3.378339 CAGTGTAATCCCGATCGTAACC 58.622 50.000 15.09 0.00 0.00 2.85
323 324 2.793232 GCAGTGTAATCCCGATCGTAAC 59.207 50.000 15.09 5.13 0.00 2.50
324 325 2.427812 TGCAGTGTAATCCCGATCGTAA 59.572 45.455 15.09 1.34 0.00 3.18
325 326 2.025898 TGCAGTGTAATCCCGATCGTA 58.974 47.619 15.09 1.72 0.00 3.43
326 327 0.821517 TGCAGTGTAATCCCGATCGT 59.178 50.000 15.09 0.00 0.00 3.73
327 328 2.154854 ATGCAGTGTAATCCCGATCG 57.845 50.000 8.51 8.51 0.00 3.69
328 329 3.206150 ACAATGCAGTGTAATCCCGATC 58.794 45.455 19.74 0.00 0.00 3.69
329 330 3.281727 ACAATGCAGTGTAATCCCGAT 57.718 42.857 19.74 0.00 0.00 4.18
330 331 2.779755 ACAATGCAGTGTAATCCCGA 57.220 45.000 19.74 0.00 0.00 5.14
331 332 4.438200 GGTTTACAATGCAGTGTAATCCCG 60.438 45.833 35.51 8.66 42.74 5.14
332 333 4.705023 AGGTTTACAATGCAGTGTAATCCC 59.295 41.667 38.42 34.19 46.24 3.85
333 334 5.897377 AGGTTTACAATGCAGTGTAATCC 57.103 39.130 36.97 36.97 45.83 3.01
334 335 7.367285 TGAAAGGTTTACAATGCAGTGTAATC 58.633 34.615 32.82 30.04 42.15 1.75
335 336 7.230510 TCTGAAAGGTTTACAATGCAGTGTAAT 59.769 33.333 32.82 21.30 42.15 1.89
336 337 6.544197 TCTGAAAGGTTTACAATGCAGTGTAA 59.456 34.615 30.01 30.01 41.18 2.41
337 338 6.058833 TCTGAAAGGTTTACAATGCAGTGTA 58.941 36.000 22.18 22.18 32.75 2.90
338 339 4.887071 TCTGAAAGGTTTACAATGCAGTGT 59.113 37.500 24.48 24.48 35.43 3.55
339 340 5.437289 TCTGAAAGGTTTACAATGCAGTG 57.563 39.130 13.51 13.51 0.00 3.66
340 341 4.520492 CCTCTGAAAGGTTTACAATGCAGT 59.480 41.667 0.00 0.00 40.67 4.40
341 342 5.051891 CCTCTGAAAGGTTTACAATGCAG 57.948 43.478 0.00 0.00 40.67 4.41
354 355 2.865492 GCTTCCTGGCCTCTGAAAG 58.135 57.895 3.32 1.96 0.00 2.62
363 364 0.034670 ACTCAATGAGGCTTCCTGGC 60.035 55.000 15.38 0.00 42.15 4.85
364 365 2.503895 AACTCAATGAGGCTTCCTGG 57.496 50.000 15.38 0.00 31.76 4.45
365 366 5.188434 TCATTAACTCAATGAGGCTTCCTG 58.812 41.667 15.38 4.65 46.48 3.86
366 367 5.441718 TCATTAACTCAATGAGGCTTCCT 57.558 39.130 15.38 0.00 46.48 3.36
378 379 8.889717 GGGATAAACGAAGATTTCATTAACTCA 58.110 33.333 0.00 0.00 0.00 3.41
379 380 8.062448 CGGGATAAACGAAGATTTCATTAACTC 58.938 37.037 0.00 0.00 0.00 3.01
380 381 7.466860 GCGGGATAAACGAAGATTTCATTAACT 60.467 37.037 0.00 0.00 0.00 2.24
381 382 6.631636 GCGGGATAAACGAAGATTTCATTAAC 59.368 38.462 0.00 0.00 0.00 2.01
382 383 6.316640 TGCGGGATAAACGAAGATTTCATTAA 59.683 34.615 0.00 0.00 0.00 1.40
383 384 5.818336 TGCGGGATAAACGAAGATTTCATTA 59.182 36.000 0.00 0.00 0.00 1.90
384 385 4.638421 TGCGGGATAAACGAAGATTTCATT 59.362 37.500 0.00 0.00 0.00 2.57
385 386 4.196193 TGCGGGATAAACGAAGATTTCAT 58.804 39.130 0.00 0.00 0.00 2.57
386 387 3.601435 TGCGGGATAAACGAAGATTTCA 58.399 40.909 0.00 0.00 0.00 2.69
387 388 4.609691 TTGCGGGATAAACGAAGATTTC 57.390 40.909 0.00 0.00 0.00 2.17
388 389 5.379732 TTTTGCGGGATAAACGAAGATTT 57.620 34.783 0.00 0.00 0.00 2.17
389 390 5.379732 TTTTTGCGGGATAAACGAAGATT 57.620 34.783 0.00 0.00 0.00 2.40
439 440 2.749776 GTCAATTTGGGTTTTGGTCCG 58.250 47.619 0.00 0.00 0.00 4.79
443 444 2.547007 GGACCGTCAATTTGGGTTTTGG 60.547 50.000 0.00 0.00 33.28 3.28
487 488 4.105553 GGTTGGTAGGTCCGCCCC 62.106 72.222 3.52 0.00 39.52 5.80
734 756 4.301027 GTGGGATAGGGCGCTCCG 62.301 72.222 6.54 0.00 41.52 4.63
735 757 3.942439 GGTGGGATAGGGCGCTCC 61.942 72.222 6.54 3.75 0.00 4.70
736 758 2.520536 ATGGTGGGATAGGGCGCTC 61.521 63.158 6.54 1.48 0.00 5.03
737 759 2.448542 ATGGTGGGATAGGGCGCT 60.449 61.111 7.64 8.86 0.00 5.92
738 760 2.281761 CATGGTGGGATAGGGCGC 60.282 66.667 0.00 0.00 0.00 6.53
739 761 1.071471 GACATGGTGGGATAGGGCG 59.929 63.158 0.00 0.00 0.00 6.13
740 762 1.352622 TGGACATGGTGGGATAGGGC 61.353 60.000 0.00 0.00 0.00 5.19
741 763 1.074405 CATGGACATGGTGGGATAGGG 59.926 57.143 4.39 0.00 35.24 3.53
742 764 1.776667 ACATGGACATGGTGGGATAGG 59.223 52.381 15.94 0.00 42.91 2.57
743 765 2.439135 TCACATGGACATGGTGGGATAG 59.561 50.000 15.94 0.00 42.91 2.08
744 766 2.486716 TCACATGGACATGGTGGGATA 58.513 47.619 15.94 0.00 42.91 2.59
745 767 1.297968 TCACATGGACATGGTGGGAT 58.702 50.000 15.94 0.00 42.91 3.85
746 768 1.064537 CATCACATGGACATGGTGGGA 60.065 52.381 15.94 8.45 42.91 4.37
747 769 1.395635 CATCACATGGACATGGTGGG 58.604 55.000 15.94 3.84 42.91 4.61
790 812 2.897350 GGCTGAATTCGCGAGGGG 60.897 66.667 9.59 0.55 0.00 4.79
964 1000 4.522975 GGCGGGGGATTTGAGGGG 62.523 72.222 0.00 0.00 0.00 4.79
1191 1287 1.300697 GTCGCTGAACTTGACCCGT 60.301 57.895 0.00 0.00 0.00 5.28
1275 1371 2.267324 GTGAGAGACAGGCCCTGC 59.733 66.667 11.63 3.68 34.37 4.85
1569 1665 1.227380 CGCCCAGGAGGAATCGAAG 60.227 63.158 0.00 0.00 38.24 3.79
1767 1863 2.722201 GGTGAGGTAGTCCCGGCTG 61.722 68.421 0.00 0.00 38.74 4.85
1928 2024 4.399395 TGGGCTGAAGCTCGCAGG 62.399 66.667 15.77 1.73 46.72 4.85
2238 2334 1.621672 CCTCCTCCAGTGCCTTCTCC 61.622 65.000 0.00 0.00 0.00 3.71
2721 2817 1.210931 CTGCCGCAATGTGGTCTTG 59.789 57.895 14.89 0.00 35.34 3.02
2769 2865 1.546476 AGCTTTGTCGTCCTCTCGAAT 59.454 47.619 0.00 0.00 41.47 3.34
2970 3066 4.283467 TCAAGGACCGAGAGAATTCTTTCA 59.717 41.667 21.97 1.53 34.08 2.69
3196 3292 1.526917 GCATGTCGCTAGCCCCATT 60.527 57.895 9.66 0.00 37.77 3.16
3234 3330 1.325355 ACGATACCATGGTAGGGTCG 58.675 55.000 30.99 30.99 42.68 4.79
3348 3444 4.648626 GAGCAGGTGTGGCTGCCA 62.649 66.667 19.30 19.30 46.79 4.92
3417 3513 2.350102 GCACCGGTTACACAAGCTAAAC 60.350 50.000 2.97 0.00 0.00 2.01
3741 3837 1.004277 TGCTCCCATACACTTGGAACC 59.996 52.381 0.00 0.00 39.25 3.62
3814 3910 4.338118 CAGAAACACTTCAAAGCCTTGGTA 59.662 41.667 0.00 0.00 33.64 3.25
3831 3927 1.197721 CAACACATCCGGCTCAGAAAC 59.802 52.381 0.00 0.00 0.00 2.78
3880 3977 5.008980 ACACTAGTGTTGAGGGAGTAGTAC 58.991 45.833 22.95 0.00 41.83 2.73
3906 4003 6.943718 TCCTTCCCATAATGTAAGACGTTTTT 59.056 34.615 0.00 0.00 0.00 1.94
3911 4008 4.503296 CCCTCCTTCCCATAATGTAAGACG 60.503 50.000 0.00 0.00 0.00 4.18
3997 4094 0.106719 CGTTATGCCCCTGGAACCAT 60.107 55.000 0.00 0.00 0.00 3.55
4158 4262 2.099756 CCGAGGATTCAGAAATTTGGGC 59.900 50.000 0.00 0.00 0.00 5.36
4175 4279 0.813184 AATTGCAACAGCCATCCGAG 59.187 50.000 0.00 0.00 0.00 4.63
4192 4299 2.744202 CACAGTTAGAGCGCCAGAAAAT 59.256 45.455 2.29 0.00 0.00 1.82
4193 4300 2.143122 CACAGTTAGAGCGCCAGAAAA 58.857 47.619 2.29 0.00 0.00 2.29
4217 4324 8.776376 ATCCAACCATTTGATTAAAACATGTC 57.224 30.769 0.00 0.00 34.24 3.06
4296 4403 1.001181 CCTTCAAGGCCACAACATTGG 59.999 52.381 5.01 0.00 39.98 3.16
4390 4589 3.139850 ACACGACGGAGATAGATACAGG 58.860 50.000 0.00 0.00 0.00 4.00
4433 4633 3.690460 ACAACTGAAAATAGCTGGAGGG 58.310 45.455 0.00 0.00 0.00 4.30
4475 4697 3.472652 TGTACCACGAAACAAGAGCATT 58.527 40.909 0.00 0.00 0.00 3.56
4538 4760 2.810852 CTGAAGAAGGGAGCAACTGAAC 59.189 50.000 0.00 0.00 0.00 3.18
4630 4853 1.450848 ATGGACCTGCACAGCATCG 60.451 57.895 0.00 0.00 38.13 3.84
4682 4906 4.347813 CGACAAAGAAAAAGAGCGGAAAA 58.652 39.130 0.00 0.00 0.00 2.29
4781 5005 3.521796 GCATTCCTTCCCGCCAGC 61.522 66.667 0.00 0.00 0.00 4.85
4786 5010 0.596082 AAAACACGCATTCCTTCCCG 59.404 50.000 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.