Multiple sequence alignment - TraesCS4A01G086800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G086800 chr4A 100.000 6066 0 0 1 6066 90891420 90885355 0.000000e+00 11202
1 TraesCS4A01G086800 chr4A 98.351 667 10 1 1 666 90898470 90897804 0.000000e+00 1170
2 TraesCS4A01G086800 chr4A 95.964 669 21 5 1 665 590646659 590647325 0.000000e+00 1081
3 TraesCS4A01G086800 chr4A 93.269 208 13 1 666 873 734482572 734482366 7.640000e-79 305
4 TraesCS4A01G086800 chr4B 94.574 2101 94 11 2878 4972 459071121 459073207 0.000000e+00 3230
5 TraesCS4A01G086800 chr4B 93.184 983 59 6 1787 2768 459070108 459071083 0.000000e+00 1437
6 TraesCS4A01G086800 chr4B 90.576 1093 72 15 4977 6066 459073243 459074307 0.000000e+00 1419
7 TraesCS4A01G086800 chr4B 95.910 489 19 1 1029 1516 459067123 459067611 0.000000e+00 791
8 TraesCS4A01G086800 chr4D 94.068 2023 108 7 2881 4901 373642083 373640071 0.000000e+00 3061
9 TraesCS4A01G086800 chr4D 93.082 983 60 6 1787 2768 373643099 373642124 0.000000e+00 1432
10 TraesCS4A01G086800 chr4D 91.372 904 46 11 913 1787 373644040 373643140 0.000000e+00 1208
11 TraesCS4A01G086800 chr4D 80.287 558 106 4 5511 6066 373638737 373638182 9.400000e-113 418
12 TraesCS4A01G086800 chr2B 96.567 670 15 6 1 665 667371508 667372174 0.000000e+00 1103
13 TraesCS4A01G086800 chr2A 96.418 670 17 6 1 665 775645601 775646268 0.000000e+00 1098
14 TraesCS4A01G086800 chr1A 96.280 672 16 8 1 665 5823548 5824217 0.000000e+00 1094
15 TraesCS4A01G086800 chr1A 95.970 670 21 6 1 666 5816498 5817165 0.000000e+00 1083
16 TraesCS4A01G086800 chr3A 96.102 667 24 2 1 665 630087127 630086461 0.000000e+00 1086
17 TraesCS4A01G086800 chr1B 95.970 670 18 7 1 665 400780735 400780070 0.000000e+00 1079
18 TraesCS4A01G086800 chrUn 95.678 671 22 6 1 666 422388372 422387704 0.000000e+00 1072
19 TraesCS4A01G086800 chr5D 84.330 619 33 17 4209 4818 486915506 486916069 1.150000e-151 547
20 TraesCS4A01G086800 chr5D 90.826 218 19 1 666 883 437472073 437471857 2.140000e-74 291
21 TraesCS4A01G086800 chr5D 96.939 98 2 1 3922 4018 486915415 486915512 4.860000e-36 163
22 TraesCS4A01G086800 chr7D 93.301 209 14 0 666 874 26782629 26782837 5.900000e-80 309
23 TraesCS4A01G086800 chr7D 92.344 209 16 0 666 874 576636626 576636418 1.280000e-76 298
24 TraesCS4A01G086800 chr3B 93.301 209 14 0 666 874 147162612 147162404 5.900000e-80 309
25 TraesCS4A01G086800 chr1D 92.788 208 15 0 666 873 320824235 320824028 9.880000e-78 302
26 TraesCS4A01G086800 chr1D 91.943 211 17 0 666 876 326240477 326240687 4.600000e-76 296
27 TraesCS4A01G086800 chr1D 91.943 211 17 0 666 876 486273453 486273663 4.600000e-76 296
28 TraesCS4A01G086800 chr5B 90.826 218 19 1 666 883 273081198 273080982 2.140000e-74 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G086800 chr4A 90885355 90891420 6065 True 11202.00 11202 100.00000 1 6066 1 chr4A.!!$R1 6065
1 TraesCS4A01G086800 chr4A 90897804 90898470 666 True 1170.00 1170 98.35100 1 666 1 chr4A.!!$R2 665
2 TraesCS4A01G086800 chr4A 590646659 590647325 666 False 1081.00 1081 95.96400 1 665 1 chr4A.!!$F1 664
3 TraesCS4A01G086800 chr4B 459067123 459074307 7184 False 1719.25 3230 93.56100 1029 6066 4 chr4B.!!$F1 5037
4 TraesCS4A01G086800 chr4D 373638182 373644040 5858 True 1529.75 3061 89.70225 913 6066 4 chr4D.!!$R1 5153
5 TraesCS4A01G086800 chr2B 667371508 667372174 666 False 1103.00 1103 96.56700 1 665 1 chr2B.!!$F1 664
6 TraesCS4A01G086800 chr2A 775645601 775646268 667 False 1098.00 1098 96.41800 1 665 1 chr2A.!!$F1 664
7 TraesCS4A01G086800 chr1A 5823548 5824217 669 False 1094.00 1094 96.28000 1 665 1 chr1A.!!$F2 664
8 TraesCS4A01G086800 chr1A 5816498 5817165 667 False 1083.00 1083 95.97000 1 666 1 chr1A.!!$F1 665
9 TraesCS4A01G086800 chr3A 630086461 630087127 666 True 1086.00 1086 96.10200 1 665 1 chr3A.!!$R1 664
10 TraesCS4A01G086800 chr1B 400780070 400780735 665 True 1079.00 1079 95.97000 1 665 1 chr1B.!!$R1 664
11 TraesCS4A01G086800 chrUn 422387704 422388372 668 True 1072.00 1072 95.67800 1 666 1 chrUn.!!$R1 665
12 TraesCS4A01G086800 chr5D 486915415 486916069 654 False 355.00 547 90.63450 3922 4818 2 chr5D.!!$F1 896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
867 885 0.167689 GCCTCGAGCTTTTCTTGCAG 59.832 55.0 6.99 0.0 38.99 4.41 F
870 888 0.250467 TCGAGCTTTTCTTGCAGCCT 60.250 50.0 0.00 0.0 36.62 4.58 F
2348 4629 0.389426 CCTCCAGGTACGGTTCGTTG 60.389 60.0 0.00 0.0 41.54 4.10 F
2742 5024 0.827507 AATGCCGCTGGAACCTTTGT 60.828 50.0 0.00 0.0 0.00 2.83 F
3775 6058 0.746063 CCTCTGCAACTTGTTGCCAA 59.254 50.0 28.37 18.2 46.82 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2329 4610 0.389426 CAACGAACCGTACCTGGAGG 60.389 60.000 0.00 3.25 39.99 4.30 R
2768 5050 1.689984 TGCATTTCCTGTGTCAGCAA 58.310 45.000 0.00 0.00 0.00 3.91 R
3422 5705 1.282738 TGATGATGCCTCCAAAGCTGA 59.717 47.619 0.00 0.00 0.00 4.26 R
4430 6716 0.027586 GGTACTGCAAATAAGCCGCG 59.972 55.000 0.00 0.00 0.00 6.46 R
5663 8806 0.318762 GGGAACTGTCTGACGAGCTT 59.681 55.000 2.98 0.69 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
294 304 0.415429 TTGCCTCCTTCTCCCTCTCT 59.585 55.000 0.00 0.00 0.00 3.10
311 321 2.655407 TCTCTAACACCTCCTCCTCCTT 59.345 50.000 0.00 0.00 0.00 3.36
439 455 1.203013 TCAAGAAGGAGGAGACGTGGA 60.203 52.381 0.00 0.00 0.00 4.02
449 466 1.407979 GGAGACGTGGATGTTCCGTAT 59.592 52.381 0.00 0.00 40.17 3.06
606 623 4.521130 TCACTCGTTGCTAGATGAACTT 57.479 40.909 0.00 0.00 0.00 2.66
654 672 8.334632 CGTAGGAAAATTTTTGTTTTCTGCAAT 58.665 29.630 4.63 0.00 43.94 3.56
661 679 4.478206 TTTGTTTTCTGCAATGTTCCCA 57.522 36.364 0.00 0.00 0.00 4.37
663 681 3.791245 TGTTTTCTGCAATGTTCCCAAC 58.209 40.909 0.00 0.00 0.00 3.77
664 682 3.196469 TGTTTTCTGCAATGTTCCCAACA 59.804 39.130 0.00 0.00 46.94 3.33
665 683 3.731652 TTTCTGCAATGTTCCCAACAG 57.268 42.857 0.00 0.00 45.95 3.16
666 684 0.961019 TCTGCAATGTTCCCAACAGC 59.039 50.000 0.00 0.00 45.95 4.40
667 685 0.675083 CTGCAATGTTCCCAACAGCA 59.325 50.000 3.99 3.99 45.95 4.41
668 686 1.274167 CTGCAATGTTCCCAACAGCAT 59.726 47.619 4.37 0.00 45.95 3.79
669 687 1.001068 TGCAATGTTCCCAACAGCATG 59.999 47.619 0.53 0.00 45.95 4.06
670 688 1.273048 GCAATGTTCCCAACAGCATGA 59.727 47.619 0.00 0.00 45.95 3.07
671 689 2.093869 GCAATGTTCCCAACAGCATGAT 60.094 45.455 0.00 0.00 45.95 2.45
672 690 3.777478 CAATGTTCCCAACAGCATGATC 58.223 45.455 0.00 0.00 45.95 2.92
673 691 2.583024 TGTTCCCAACAGCATGATCA 57.417 45.000 0.00 0.00 39.69 2.92
674 692 3.090210 TGTTCCCAACAGCATGATCAT 57.910 42.857 1.18 1.18 39.69 2.45
675 693 2.756207 TGTTCCCAACAGCATGATCATG 59.244 45.455 28.04 28.04 39.69 3.07
676 694 2.756760 GTTCCCAACAGCATGATCATGT 59.243 45.455 31.09 18.12 39.69 3.21
677 695 3.929955 TCCCAACAGCATGATCATGTA 57.070 42.857 31.09 9.04 39.69 2.29
678 696 4.233632 TCCCAACAGCATGATCATGTAA 57.766 40.909 31.09 9.92 39.69 2.41
679 697 3.947196 TCCCAACAGCATGATCATGTAAC 59.053 43.478 31.09 17.94 39.69 2.50
680 698 3.695556 CCCAACAGCATGATCATGTAACA 59.304 43.478 31.09 0.00 39.69 2.41
681 699 4.340097 CCCAACAGCATGATCATGTAACAT 59.660 41.667 31.09 14.97 39.69 2.71
682 700 5.532032 CCCAACAGCATGATCATGTAACATA 59.468 40.000 31.09 0.00 39.69 2.29
683 701 6.039605 CCCAACAGCATGATCATGTAACATAA 59.960 38.462 31.09 0.00 39.69 1.90
684 702 7.255695 CCCAACAGCATGATCATGTAACATAAT 60.256 37.037 31.09 11.37 39.69 1.28
685 703 7.593644 CCAACAGCATGATCATGTAACATAATG 59.406 37.037 31.09 19.60 39.69 1.90
686 704 8.347035 CAACAGCATGATCATGTAACATAATGA 58.653 33.333 31.09 0.00 39.69 2.57
687 705 8.631480 ACAGCATGATCATGTAACATAATGAT 57.369 30.769 31.09 4.18 44.32 2.45
688 706 9.729281 ACAGCATGATCATGTAACATAATGATA 57.271 29.630 31.09 0.00 42.26 2.15
699 717 8.520835 TGTAACATAATGATATTCTGTCGAGC 57.479 34.615 0.00 0.00 0.00 5.03
700 718 8.360390 TGTAACATAATGATATTCTGTCGAGCT 58.640 33.333 0.00 0.00 0.00 4.09
701 719 9.841880 GTAACATAATGATATTCTGTCGAGCTA 57.158 33.333 0.00 0.00 0.00 3.32
703 721 9.579768 AACATAATGATATTCTGTCGAGCTATC 57.420 33.333 0.00 0.00 0.00 2.08
704 722 8.194104 ACATAATGATATTCTGTCGAGCTATCC 58.806 37.037 0.00 0.00 0.00 2.59
705 723 6.596309 AATGATATTCTGTCGAGCTATCCA 57.404 37.500 0.00 0.00 0.00 3.41
706 724 5.635417 TGATATTCTGTCGAGCTATCCAG 57.365 43.478 0.00 0.00 0.00 3.86
719 737 4.139183 GCTATCCAGCTAAAATTGAGCG 57.861 45.455 0.00 0.00 44.93 5.03
720 738 3.809832 GCTATCCAGCTAAAATTGAGCGA 59.190 43.478 0.00 0.00 44.93 4.93
721 739 4.084118 GCTATCCAGCTAAAATTGAGCGAG 60.084 45.833 0.00 0.00 44.93 5.03
722 740 2.009774 TCCAGCTAAAATTGAGCGAGC 58.990 47.619 0.00 0.00 44.98 5.03
723 741 1.064654 CCAGCTAAAATTGAGCGAGCC 59.935 52.381 0.00 0.00 44.98 4.70
724 742 1.739466 CAGCTAAAATTGAGCGAGCCA 59.261 47.619 0.00 0.00 44.98 4.75
725 743 2.162208 CAGCTAAAATTGAGCGAGCCAA 59.838 45.455 0.00 0.00 44.98 4.52
726 744 3.019564 AGCTAAAATTGAGCGAGCCAAT 58.980 40.909 0.00 6.14 44.98 3.16
727 745 4.035558 CAGCTAAAATTGAGCGAGCCAATA 59.964 41.667 10.55 0.00 44.98 1.90
728 746 4.823989 AGCTAAAATTGAGCGAGCCAATAT 59.176 37.500 10.55 7.15 44.98 1.28
729 747 5.300286 AGCTAAAATTGAGCGAGCCAATATT 59.700 36.000 10.55 0.00 44.98 1.28
730 748 5.400485 GCTAAAATTGAGCGAGCCAATATTG 59.600 40.000 8.58 8.58 33.51 1.90
731 749 9.545071 AGCTAAAATTGAGCGAGCCAATATTGG 62.545 40.741 27.35 27.35 46.74 3.16
743 761 2.554032 CCAATATTGGGTCAAGATCGGC 59.446 50.000 24.61 0.00 44.70 5.54
744 762 3.480470 CAATATTGGGTCAAGATCGGCT 58.520 45.455 7.62 0.00 0.00 5.52
745 763 2.910688 TATTGGGTCAAGATCGGCTC 57.089 50.000 0.00 0.00 0.00 4.70
746 764 0.179073 ATTGGGTCAAGATCGGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
747 765 1.541310 TTGGGTCAAGATCGGCTCGT 61.541 55.000 0.00 0.00 0.00 4.18
748 766 1.218316 GGGTCAAGATCGGCTCGTT 59.782 57.895 0.00 0.00 0.00 3.85
749 767 0.391263 GGGTCAAGATCGGCTCGTTT 60.391 55.000 0.00 0.00 0.00 3.60
750 768 1.000145 GGTCAAGATCGGCTCGTTTC 59.000 55.000 0.00 0.00 0.00 2.78
751 769 1.404315 GGTCAAGATCGGCTCGTTTCT 60.404 52.381 0.00 0.00 0.00 2.52
752 770 1.921230 GTCAAGATCGGCTCGTTTCTC 59.079 52.381 0.00 0.00 0.00 2.87
753 771 0.917259 CAAGATCGGCTCGTTTCTCG 59.083 55.000 0.00 0.00 41.41 4.04
754 772 0.809385 AAGATCGGCTCGTTTCTCGA 59.191 50.000 0.00 0.00 46.83 4.04
785 803 9.677567 TTTACATAAAATGTTCAAACTCAGCTC 57.322 29.630 0.00 0.00 41.63 4.09
786 804 7.275888 ACATAAAATGTTCAAACTCAGCTCA 57.724 32.000 0.00 0.00 41.63 4.26
787 805 7.889469 ACATAAAATGTTCAAACTCAGCTCAT 58.111 30.769 0.00 0.00 41.63 2.90
788 806 8.362639 ACATAAAATGTTCAAACTCAGCTCATT 58.637 29.630 0.00 0.00 41.63 2.57
789 807 9.199982 CATAAAATGTTCAAACTCAGCTCATTT 57.800 29.630 0.00 0.00 36.18 2.32
790 808 7.704789 AAAATGTTCAAACTCAGCTCATTTC 57.295 32.000 5.12 0.00 34.44 2.17
791 809 6.645790 AATGTTCAAACTCAGCTCATTTCT 57.354 33.333 0.00 0.00 0.00 2.52
792 810 6.645790 ATGTTCAAACTCAGCTCATTTCTT 57.354 33.333 0.00 0.00 0.00 2.52
793 811 6.455360 TGTTCAAACTCAGCTCATTTCTTT 57.545 33.333 0.00 0.00 0.00 2.52
794 812 6.866480 TGTTCAAACTCAGCTCATTTCTTTT 58.134 32.000 0.00 0.00 0.00 2.27
795 813 7.322664 TGTTCAAACTCAGCTCATTTCTTTTT 58.677 30.769 0.00 0.00 0.00 1.94
796 814 8.465999 TGTTCAAACTCAGCTCATTTCTTTTTA 58.534 29.630 0.00 0.00 0.00 1.52
797 815 9.301153 GTTCAAACTCAGCTCATTTCTTTTTAA 57.699 29.630 0.00 0.00 0.00 1.52
798 816 9.520204 TTCAAACTCAGCTCATTTCTTTTTAAG 57.480 29.630 0.00 0.00 0.00 1.85
799 817 8.686334 TCAAACTCAGCTCATTTCTTTTTAAGT 58.314 29.630 0.00 0.00 0.00 2.24
800 818 8.962111 CAAACTCAGCTCATTTCTTTTTAAGTC 58.038 33.333 0.00 0.00 0.00 3.01
801 819 6.892691 ACTCAGCTCATTTCTTTTTAAGTCG 58.107 36.000 0.00 0.00 0.00 4.18
802 820 6.706270 ACTCAGCTCATTTCTTTTTAAGTCGA 59.294 34.615 0.00 0.00 0.00 4.20
803 821 7.389053 ACTCAGCTCATTTCTTTTTAAGTCGAT 59.611 33.333 0.00 0.00 0.00 3.59
804 822 7.743104 TCAGCTCATTTCTTTTTAAGTCGATC 58.257 34.615 0.00 0.00 0.00 3.69
805 823 7.604164 TCAGCTCATTTCTTTTTAAGTCGATCT 59.396 33.333 0.00 0.00 0.00 2.75
806 824 7.902403 CAGCTCATTTCTTTTTAAGTCGATCTC 59.098 37.037 0.00 0.00 0.00 2.75
807 825 6.897138 GCTCATTTCTTTTTAAGTCGATCTCG 59.103 38.462 0.00 0.00 41.45 4.04
844 862 4.225497 TCGATCTCGAGCAGCTCA 57.775 55.556 22.49 8.59 44.22 4.26
845 863 1.724467 TCGATCTCGAGCAGCTCAC 59.276 57.895 22.49 6.81 44.22 3.51
846 864 1.653835 CGATCTCGAGCAGCTCACG 60.654 63.158 22.49 10.17 43.02 4.35
847 865 1.724467 GATCTCGAGCAGCTCACGA 59.276 57.895 22.49 16.68 36.42 4.35
866 884 2.247790 GCCTCGAGCTTTTCTTGCA 58.752 52.632 6.99 0.00 38.99 4.08
867 885 0.167689 GCCTCGAGCTTTTCTTGCAG 59.832 55.000 6.99 0.00 38.99 4.41
868 886 0.167689 CCTCGAGCTTTTCTTGCAGC 59.832 55.000 6.99 0.00 36.16 5.25
869 887 0.167689 CTCGAGCTTTTCTTGCAGCC 59.832 55.000 0.00 0.00 36.62 4.85
870 888 0.250467 TCGAGCTTTTCTTGCAGCCT 60.250 50.000 0.00 0.00 36.62 4.58
871 889 0.595095 CGAGCTTTTCTTGCAGCCTT 59.405 50.000 0.00 0.00 36.62 4.35
872 890 1.806542 CGAGCTTTTCTTGCAGCCTTA 59.193 47.619 0.00 0.00 36.62 2.69
873 891 2.159599 CGAGCTTTTCTTGCAGCCTTAG 60.160 50.000 0.00 0.00 36.62 2.18
874 892 2.816672 GAGCTTTTCTTGCAGCCTTAGT 59.183 45.455 0.00 0.00 36.62 2.24
875 893 2.816672 AGCTTTTCTTGCAGCCTTAGTC 59.183 45.455 0.00 0.00 36.62 2.59
876 894 2.816672 GCTTTTCTTGCAGCCTTAGTCT 59.183 45.455 0.00 0.00 0.00 3.24
877 895 3.254411 GCTTTTCTTGCAGCCTTAGTCTT 59.746 43.478 0.00 0.00 0.00 3.01
878 896 4.614764 GCTTTTCTTGCAGCCTTAGTCTTC 60.615 45.833 0.00 0.00 0.00 2.87
879 897 2.370281 TCTTGCAGCCTTAGTCTTCG 57.630 50.000 0.00 0.00 0.00 3.79
880 898 0.723981 CTTGCAGCCTTAGTCTTCGC 59.276 55.000 0.00 0.00 0.00 4.70
881 899 0.673644 TTGCAGCCTTAGTCTTCGCC 60.674 55.000 0.00 0.00 0.00 5.54
882 900 1.815840 GCAGCCTTAGTCTTCGCCC 60.816 63.158 0.00 0.00 0.00 6.13
883 901 1.901085 CAGCCTTAGTCTTCGCCCT 59.099 57.895 0.00 0.00 0.00 5.19
884 902 1.112113 CAGCCTTAGTCTTCGCCCTA 58.888 55.000 0.00 0.00 0.00 3.53
885 903 1.480954 CAGCCTTAGTCTTCGCCCTAA 59.519 52.381 0.00 0.00 0.00 2.69
886 904 2.093658 CAGCCTTAGTCTTCGCCCTAAA 60.094 50.000 0.00 0.00 0.00 1.85
887 905 2.570302 AGCCTTAGTCTTCGCCCTAAAA 59.430 45.455 0.00 0.00 0.00 1.52
888 906 3.008704 AGCCTTAGTCTTCGCCCTAAAAA 59.991 43.478 0.00 0.00 0.00 1.94
906 924 2.287977 AAAAACCTAGTGTCCCTGCC 57.712 50.000 0.00 0.00 0.00 4.85
907 925 1.145571 AAAACCTAGTGTCCCTGCCA 58.854 50.000 0.00 0.00 0.00 4.92
908 926 1.145571 AAACCTAGTGTCCCTGCCAA 58.854 50.000 0.00 0.00 0.00 4.52
909 927 1.145571 AACCTAGTGTCCCTGCCAAA 58.854 50.000 0.00 0.00 0.00 3.28
910 928 1.372501 ACCTAGTGTCCCTGCCAAAT 58.627 50.000 0.00 0.00 0.00 2.32
911 929 1.710809 ACCTAGTGTCCCTGCCAAATT 59.289 47.619 0.00 0.00 0.00 1.82
912 930 2.916934 ACCTAGTGTCCCTGCCAAATTA 59.083 45.455 0.00 0.00 0.00 1.40
913 931 3.332485 ACCTAGTGTCCCTGCCAAATTAA 59.668 43.478 0.00 0.00 0.00 1.40
914 932 4.202631 ACCTAGTGTCCCTGCCAAATTAAA 60.203 41.667 0.00 0.00 0.00 1.52
915 933 4.770010 CCTAGTGTCCCTGCCAAATTAAAA 59.230 41.667 0.00 0.00 0.00 1.52
916 934 5.245075 CCTAGTGTCCCTGCCAAATTAAAAA 59.755 40.000 0.00 0.00 0.00 1.94
958 980 1.901650 CTGAACGCCAACCTCTTCGC 61.902 60.000 0.00 0.00 0.00 4.70
960 982 4.699522 ACGCCAACCTCTTCGCCC 62.700 66.667 0.00 0.00 0.00 6.13
962 984 4.344865 GCCAACCTCTTCGCCCCA 62.345 66.667 0.00 0.00 0.00 4.96
1023 1046 9.439994 TTTCTTCTGAAGTATCACGGCATCGTA 62.440 40.741 16.43 0.00 39.42 3.43
1101 1153 2.592512 TCCTCTCATACTTCCCCTCCTT 59.407 50.000 0.00 0.00 0.00 3.36
1114 1166 0.633921 CCTCCTTCTCCTCCTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
1128 1180 1.821332 CCTCATCCTGCCGCTTTCC 60.821 63.158 0.00 0.00 0.00 3.13
1371 1423 5.647225 GCCTATCTCCATGAATCTTGAATCC 59.353 44.000 0.00 0.00 0.00 3.01
1376 1428 1.265095 CATGAATCTTGAATCCGCGGG 59.735 52.381 27.83 8.07 0.00 6.13
1377 1429 0.539518 TGAATCTTGAATCCGCGGGA 59.460 50.000 27.83 14.11 35.55 5.14
1427 1479 2.223249 CCCCAATAGTTCGTTTGATGCG 60.223 50.000 0.00 0.00 0.00 4.73
1600 3840 3.175929 TCGTGATGTAACATACTGTGCG 58.824 45.455 0.00 0.00 0.00 5.34
1646 3886 3.701542 CCAGAGATGTTAGGTGCTACTGA 59.298 47.826 0.00 0.00 0.00 3.41
1715 3955 9.706846 GAGAGTCTAGTTTAGAATTAGTTCGTC 57.293 37.037 0.00 0.00 39.38 4.20
1754 3994 2.777114 TCCCCAATAGCAGCATAGAACA 59.223 45.455 0.00 0.00 0.00 3.18
1766 4006 2.083774 CATAGAACAAAGCGGCCTTGA 58.916 47.619 17.63 0.00 0.00 3.02
1881 4162 5.048713 ACTGGAACGTTTTTCTTGGATGATC 60.049 40.000 0.46 0.00 0.00 2.92
1900 4181 8.563289 GATGATCTCATCTTTTCATTCTTTGC 57.437 34.615 11.99 0.00 46.88 3.68
1955 4236 8.049117 CCAGCATATCCATACTTGGTTACATAT 58.951 37.037 0.00 0.00 44.06 1.78
2050 4331 6.129168 CGTATATGCTGTCGTTCCTGTAATTC 60.129 42.308 0.00 0.00 0.00 2.17
2304 4585 1.133945 TGTTAACTCACAGCTTGGCCA 60.134 47.619 0.00 0.00 0.00 5.36
2341 4622 1.971357 AGCATAATCCTCCAGGTACGG 59.029 52.381 0.00 0.00 36.34 4.02
2347 4628 0.540365 TCCTCCAGGTACGGTTCGTT 60.540 55.000 0.00 0.00 41.54 3.85
2348 4629 0.389426 CCTCCAGGTACGGTTCGTTG 60.389 60.000 0.00 0.00 41.54 4.10
2375 4656 1.738350 CAGCTCTCCTTGTGAAGCATG 59.262 52.381 0.00 0.00 0.00 4.06
2379 4660 3.405831 CTCTCCTTGTGAAGCATGTTCA 58.594 45.455 6.62 6.62 0.00 3.18
2394 4675 5.987347 AGCATGTTCAACTTTTTCAAGATGG 59.013 36.000 0.00 0.00 34.34 3.51
2396 4677 5.596836 TGTTCAACTTTTTCAAGATGGCT 57.403 34.783 0.00 0.00 34.34 4.75
2397 4678 5.350633 TGTTCAACTTTTTCAAGATGGCTG 58.649 37.500 0.00 0.00 34.34 4.85
2408 4689 7.575414 TTTCAAGATGGCTGTGTTTTAACTA 57.425 32.000 0.00 0.00 0.00 2.24
2416 4697 7.461182 TGGCTGTGTTTTAACTAATAATGCT 57.539 32.000 0.00 0.00 0.00 3.79
2431 4712 6.655078 AATAATGCTGTGATATGTTTCCCC 57.345 37.500 0.00 0.00 0.00 4.81
2432 4713 3.959495 ATGCTGTGATATGTTTCCCCT 57.041 42.857 0.00 0.00 0.00 4.79
2434 4715 2.301346 GCTGTGATATGTTTCCCCTGG 58.699 52.381 0.00 0.00 0.00 4.45
2435 4716 2.301346 CTGTGATATGTTTCCCCTGGC 58.699 52.381 0.00 0.00 0.00 4.85
2436 4717 1.922447 TGTGATATGTTTCCCCTGGCT 59.078 47.619 0.00 0.00 0.00 4.75
2437 4718 2.311542 TGTGATATGTTTCCCCTGGCTT 59.688 45.455 0.00 0.00 0.00 4.35
2443 4724 0.881796 GTTTCCCCTGGCTTTTCGAG 59.118 55.000 0.00 0.00 0.00 4.04
2479 4760 3.056393 CAGAATTGCTGGCAGAATTTCCA 60.056 43.478 20.86 1.91 41.07 3.53
2489 4770 6.357579 TGGCAGAATTTCCATGTTAACATT 57.642 33.333 18.50 3.94 33.61 2.71
2490 4771 7.473735 TGGCAGAATTTCCATGTTAACATTA 57.526 32.000 18.50 7.28 33.61 1.90
2491 4772 8.076910 TGGCAGAATTTCCATGTTAACATTAT 57.923 30.769 18.50 7.27 33.61 1.28
2492 4773 8.538701 TGGCAGAATTTCCATGTTAACATTATT 58.461 29.630 18.50 14.31 33.61 1.40
2555 4836 6.796705 TTATGCATATGAGAGAGCACATTG 57.203 37.500 7.36 0.00 40.14 2.82
2578 4859 6.929625 TGTCTTGAACAAATTTCCTTGTCAA 58.070 32.000 0.00 0.00 38.59 3.18
2588 4869 6.976934 AATTTCCTTGTCAACTGGTACAAT 57.023 33.333 0.00 0.00 38.70 2.71
2604 4885 8.932791 ACTGGTACAATAAGAAACTAATGTTCG 58.067 33.333 0.00 0.00 38.70 3.95
2716 4998 6.681729 AGTACAATTGGACTTGAGGAGTAA 57.318 37.500 18.05 0.00 39.19 2.24
2728 5010 8.035984 GGACTTGAGGAGTAATATACTAATGCC 58.964 40.741 0.00 0.00 39.19 4.40
2732 5014 5.967088 AGGAGTAATATACTAATGCCGCTG 58.033 41.667 0.00 0.00 39.59 5.18
2741 5023 1.133025 CTAATGCCGCTGGAACCTTTG 59.867 52.381 0.00 0.00 0.00 2.77
2742 5024 0.827507 AATGCCGCTGGAACCTTTGT 60.828 50.000 0.00 0.00 0.00 2.83
2768 5050 6.542370 GGTACAGACATAAACTATTGCCACAT 59.458 38.462 0.00 0.00 0.00 3.21
2769 5051 7.067008 GGTACAGACATAAACTATTGCCACATT 59.933 37.037 0.00 0.00 0.00 2.71
2770 5052 6.855836 ACAGACATAAACTATTGCCACATTG 58.144 36.000 0.00 0.00 0.00 2.82
2771 5053 5.745294 CAGACATAAACTATTGCCACATTGC 59.255 40.000 0.00 0.00 0.00 3.56
2772 5054 5.653769 AGACATAAACTATTGCCACATTGCT 59.346 36.000 0.00 0.00 0.00 3.91
2773 5055 5.653507 ACATAAACTATTGCCACATTGCTG 58.346 37.500 0.00 0.00 0.00 4.41
2774 5056 5.418524 ACATAAACTATTGCCACATTGCTGA 59.581 36.000 0.00 0.00 0.00 4.26
2775 5057 3.855689 AACTATTGCCACATTGCTGAC 57.144 42.857 0.00 0.00 0.00 3.51
2776 5058 2.794103 ACTATTGCCACATTGCTGACA 58.206 42.857 0.00 0.00 0.00 3.58
2777 5059 2.489329 ACTATTGCCACATTGCTGACAC 59.511 45.455 0.00 0.00 0.00 3.67
2778 5060 1.330234 ATTGCCACATTGCTGACACA 58.670 45.000 0.00 0.00 0.00 3.72
2786 5068 2.029649 ACATTGCTGACACAGGAAATGC 60.030 45.455 9.42 0.00 44.25 3.56
2818 5100 5.944049 CAGCACTGCAAAATATGTTCATC 57.056 39.130 3.30 0.00 0.00 2.92
2819 5101 5.647589 CAGCACTGCAAAATATGTTCATCT 58.352 37.500 3.30 0.00 0.00 2.90
2820 5102 5.515270 CAGCACTGCAAAATATGTTCATCTG 59.485 40.000 3.30 0.00 0.00 2.90
2821 5103 4.266976 GCACTGCAAAATATGTTCATCTGC 59.733 41.667 0.00 0.00 0.00 4.26
2822 5104 4.802039 CACTGCAAAATATGTTCATCTGCC 59.198 41.667 0.00 0.00 0.00 4.85
2823 5105 4.708421 ACTGCAAAATATGTTCATCTGCCT 59.292 37.500 0.00 0.00 0.00 4.75
2824 5106 5.887598 ACTGCAAAATATGTTCATCTGCCTA 59.112 36.000 0.00 0.00 0.00 3.93
2825 5107 6.135290 TGCAAAATATGTTCATCTGCCTAC 57.865 37.500 0.00 0.00 0.00 3.18
2826 5108 5.651576 TGCAAAATATGTTCATCTGCCTACA 59.348 36.000 0.00 0.00 0.00 2.74
2827 5109 6.321945 TGCAAAATATGTTCATCTGCCTACAT 59.678 34.615 0.00 0.00 35.55 2.29
2828 5110 6.639686 GCAAAATATGTTCATCTGCCTACATG 59.360 38.462 0.00 0.00 33.58 3.21
2829 5111 7.469043 GCAAAATATGTTCATCTGCCTACATGA 60.469 37.037 0.00 0.00 33.58 3.07
2830 5112 7.741027 AAATATGTTCATCTGCCTACATGAG 57.259 36.000 0.00 0.00 33.58 2.90
2831 5113 4.767578 ATGTTCATCTGCCTACATGAGT 57.232 40.909 0.00 0.00 30.68 3.41
2832 5114 5.876651 ATGTTCATCTGCCTACATGAGTA 57.123 39.130 0.00 0.00 30.68 2.59
2833 5115 5.876651 TGTTCATCTGCCTACATGAGTAT 57.123 39.130 0.00 0.00 30.68 2.12
2834 5116 6.976934 TGTTCATCTGCCTACATGAGTATA 57.023 37.500 0.00 0.00 30.68 1.47
2835 5117 6.749139 TGTTCATCTGCCTACATGAGTATAC 58.251 40.000 0.00 0.00 30.68 1.47
2836 5118 6.551227 TGTTCATCTGCCTACATGAGTATACT 59.449 38.462 4.68 4.68 30.68 2.12
2837 5119 7.724061 TGTTCATCTGCCTACATGAGTATACTA 59.276 37.037 5.09 0.00 30.68 1.82
2838 5120 8.744652 GTTCATCTGCCTACATGAGTATACTAT 58.255 37.037 5.09 0.00 30.68 2.12
2839 5121 9.975218 TTCATCTGCCTACATGAGTATACTATA 57.025 33.333 5.09 0.00 30.68 1.31
2874 5156 8.519799 AACAAAACCAACTCTTATTCTTCTCA 57.480 30.769 0.00 0.00 0.00 3.27
2875 5157 8.519799 ACAAAACCAACTCTTATTCTTCTCAA 57.480 30.769 0.00 0.00 0.00 3.02
2876 5158 8.624776 ACAAAACCAACTCTTATTCTTCTCAAG 58.375 33.333 0.00 0.00 0.00 3.02
2887 5169 9.071276 TCTTATTCTTCTCAAGCAGTCATTTTT 57.929 29.630 0.00 0.00 0.00 1.94
2926 5208 3.245229 TGTTCCATGGTATCTGCACCTTT 60.245 43.478 12.58 0.00 39.50 3.11
2943 5225 5.518847 GCACCTTTTAGTTTCTTTCAACCAC 59.481 40.000 0.00 0.00 0.00 4.16
3006 5289 6.376581 CCAGAGAGAAGCATTTGGTAGAATTT 59.623 38.462 0.00 0.00 0.00 1.82
3008 5291 7.967303 CAGAGAGAAGCATTTGGTAGAATTTTC 59.033 37.037 0.00 0.00 0.00 2.29
3011 5294 6.612306 AGAAGCATTTGGTAGAATTTTCGAC 58.388 36.000 0.00 0.00 32.87 4.20
3020 5303 7.001099 TGGTAGAATTTTCGACTCCTAGTTT 57.999 36.000 4.03 0.00 33.94 2.66
3021 5304 6.872020 TGGTAGAATTTTCGACTCCTAGTTTG 59.128 38.462 4.03 0.00 33.94 2.93
3022 5305 7.095270 GGTAGAATTTTCGACTCCTAGTTTGA 58.905 38.462 4.03 0.00 33.94 2.69
3024 5307 9.152595 GTAGAATTTTCGACTCCTAGTTTGAAT 57.847 33.333 0.00 0.00 31.27 2.57
3025 5308 8.622948 AGAATTTTCGACTCCTAGTTTGAATT 57.377 30.769 0.00 0.00 0.00 2.17
3026 5309 8.507249 AGAATTTTCGACTCCTAGTTTGAATTG 58.493 33.333 0.00 0.00 0.00 2.32
3027 5310 7.979444 ATTTTCGACTCCTAGTTTGAATTGA 57.021 32.000 0.00 0.00 0.00 2.57
3028 5311 7.421530 TTTTCGACTCCTAGTTTGAATTGAG 57.578 36.000 0.00 0.00 0.00 3.02
3029 5312 5.723672 TCGACTCCTAGTTTGAATTGAGT 57.276 39.130 0.00 0.00 35.88 3.41
3032 5315 7.663827 TCGACTCCTAGTTTGAATTGAGTTTA 58.336 34.615 0.00 0.00 33.50 2.01
3062 5345 8.449397 GGATCTAATTGTGCATGATACATTCTC 58.551 37.037 0.00 0.00 0.00 2.87
3111 5394 3.950397 ACTTGCAATTCCGGAACTGATA 58.050 40.909 28.73 13.76 0.00 2.15
3198 5481 1.339929 GTGTTGGCATTCGGTTTCCTT 59.660 47.619 0.00 0.00 0.00 3.36
3200 5483 1.886542 GTTGGCATTCGGTTTCCTTCT 59.113 47.619 0.00 0.00 0.00 2.85
3215 5498 7.753580 CGGTTTCCTTCTAATTTATTTGGACAC 59.246 37.037 0.00 0.00 0.00 3.67
3218 5501 6.795590 TCCTTCTAATTTATTTGGACACCCA 58.204 36.000 0.00 0.00 41.64 4.51
3245 5528 8.417884 ACTGATAAGAGGATAGAAGCAGTTAAC 58.582 37.037 0.00 0.00 30.66 2.01
3255 5538 9.036671 GGATAGAAGCAGTTAACTCAGAATTAC 57.963 37.037 4.77 0.00 0.00 1.89
3275 5558 6.620877 TTACAGTACTGGACCAATCATTCT 57.379 37.500 26.12 3.60 34.19 2.40
3332 5615 5.490139 TCCCTATGTCGTTTACTACTTCG 57.510 43.478 0.00 0.00 0.00 3.79
3374 5657 2.799207 CGAAAGTGTGTTTGCAAGGCAT 60.799 45.455 0.00 0.00 38.76 4.40
3395 5678 6.239120 GGCATTCAATTTCAGCATACCTATGT 60.239 38.462 0.00 0.00 36.11 2.29
3398 5681 4.580167 TCAATTTCAGCATACCTATGTGGC 59.420 41.667 0.00 0.00 40.22 5.01
3422 5705 5.008019 CCATCTGCATGCGAAAGTTAGTAAT 59.992 40.000 14.09 0.00 0.00 1.89
3453 5736 4.400251 GGAGGCATCATCAAATGAGAACAA 59.600 41.667 0.00 0.00 43.53 2.83
3459 5742 6.034683 GCATCATCAAATGAGAACAAAAGAGC 59.965 38.462 0.00 0.00 43.53 4.09
3539 5822 3.498777 GGATTTTAGCAATAGACGGAGGC 59.501 47.826 0.00 0.00 0.00 4.70
3569 5852 8.500773 GTCTCTTTCATTGACCATACGTTAAAA 58.499 33.333 0.00 0.00 0.00 1.52
3572 5855 8.286800 TCTTTCATTGACCATACGTTAAAACAG 58.713 33.333 0.00 0.00 0.00 3.16
3599 5882 7.201767 CCATTCCAAACTTCTATCTTGATCACC 60.202 40.741 0.00 0.00 0.00 4.02
3775 6058 0.746063 CCTCTGCAACTTGTTGCCAA 59.254 50.000 28.37 18.20 46.82 4.52
3808 6091 3.007182 CACAAACCTTTCTTCCATGCCAT 59.993 43.478 0.00 0.00 0.00 4.40
3894 6177 8.417106 TGCTAGATTCTAATGGTAAGAAGACTG 58.583 37.037 0.00 0.00 36.46 3.51
3975 6258 5.010112 TGGCTCAACCGTTTGATATTTGAAA 59.990 36.000 0.00 0.00 41.05 2.69
4302 6585 3.942130 TGTACATATCTGGATGGAGCG 57.058 47.619 0.00 0.00 0.00 5.03
4306 6589 2.563179 ACATATCTGGATGGAGCGTACC 59.437 50.000 0.00 0.00 0.00 3.34
4307 6590 2.677542 TATCTGGATGGAGCGTACCT 57.322 50.000 0.00 0.00 0.00 3.08
4308 6591 1.794714 ATCTGGATGGAGCGTACCTT 58.205 50.000 0.00 0.00 0.00 3.50
4430 6716 0.601046 GCTTGTTTGCAGAAAGGGCC 60.601 55.000 0.00 0.00 0.00 5.80
4433 6719 3.669344 TTTGCAGAAAGGGCCGCG 61.669 61.111 0.00 0.00 0.00 6.46
4444 6730 3.821055 GGCCGCGGCTTATTTGCA 61.821 61.111 45.23 0.00 41.60 4.08
4525 6811 0.250901 TTTCTGCCAGGTTCTCCAGC 60.251 55.000 0.00 0.00 36.30 4.85
4625 6915 3.004524 GGAGGATAATTCTACTCGCGTGT 59.995 47.826 18.61 18.61 0.00 4.49
4655 6945 3.381272 CGGCCATGATACATTTGAAGGTT 59.619 43.478 2.24 0.00 0.00 3.50
4896 7229 5.527214 TGTACATTTCTGAAGTGAACTGTGG 59.473 40.000 18.21 0.00 39.21 4.17
4911 7244 2.224209 ACTGTGGTTGGGTACTTTCTCG 60.224 50.000 0.00 0.00 0.00 4.04
4925 7280 5.280654 ACTTTCTCGTGTTGTACCCTTTA 57.719 39.130 0.00 0.00 0.00 1.85
4928 7283 4.877378 TCTCGTGTTGTACCCTTTACAT 57.123 40.909 0.00 0.00 0.00 2.29
4966 7323 3.849911 TGTATGCTGGAGAAGAAACTCG 58.150 45.455 0.00 0.00 37.74 4.18
4972 7329 5.305585 TGCTGGAGAAGAAACTCGTTTTAT 58.694 37.500 0.00 0.00 37.74 1.40
4974 7331 5.607119 TGGAGAAGAAACTCGTTTTATGC 57.393 39.130 0.00 0.00 37.74 3.14
4975 7332 5.060506 TGGAGAAGAAACTCGTTTTATGCA 58.939 37.500 0.00 0.00 37.74 3.96
4978 7366 7.552687 TGGAGAAGAAACTCGTTTTATGCATAT 59.447 33.333 7.36 0.00 37.74 1.78
4985 7373 5.611374 ACTCGTTTTATGCATATGCTAGGT 58.389 37.500 27.13 13.48 42.66 3.08
4992 7380 4.970860 ATGCATATGCTAGGTTCAGACT 57.029 40.909 27.13 0.00 42.66 3.24
5008 7396 8.993424 AGGTTCAGACTCTACATATAAAACCAT 58.007 33.333 0.00 0.00 35.90 3.55
5032 7428 4.670896 AATCCCAACAGTTGTTTCTTGG 57.329 40.909 12.42 5.24 35.83 3.61
5047 7443 1.281867 TCTTGGTATCTTGGTGCCCTG 59.718 52.381 0.00 0.00 0.00 4.45
5064 7460 5.472137 GTGCCCTGTCAAACTAGTATGAAAA 59.528 40.000 0.00 0.00 0.00 2.29
5079 7476 9.314321 CTAGTATGAAAATGGTTCAAGTACGAT 57.686 33.333 0.00 0.00 31.55 3.73
5091 7488 8.952278 TGGTTCAAGTACGATATGCTTAAAAAT 58.048 29.630 0.00 0.00 31.10 1.82
5092 7489 9.783256 GGTTCAAGTACGATATGCTTAAAAATT 57.217 29.630 0.00 0.00 31.10 1.82
5094 7491 8.835467 TCAAGTACGATATGCTTAAAAATTGC 57.165 30.769 0.00 0.00 31.10 3.56
5095 7492 7.638295 TCAAGTACGATATGCTTAAAAATTGCG 59.362 33.333 0.00 0.00 31.10 4.85
5098 7495 6.790336 ACGATATGCTTAAAAATTGCGAAC 57.210 33.333 0.00 0.00 0.00 3.95
5099 7496 6.551736 ACGATATGCTTAAAAATTGCGAACT 58.448 32.000 0.00 0.00 0.00 3.01
5100 7497 7.690228 ACGATATGCTTAAAAATTGCGAACTA 58.310 30.769 0.00 0.00 0.00 2.24
5101 7498 8.178964 ACGATATGCTTAAAAATTGCGAACTAA 58.821 29.630 0.00 0.00 0.00 2.24
5103 7500 6.632171 ATGCTTAAAAATTGCGAACTAAGC 57.368 33.333 10.52 10.52 40.91 3.09
5104 7501 5.768317 TGCTTAAAAATTGCGAACTAAGCT 58.232 33.333 15.25 0.00 41.04 3.74
5105 7502 6.904498 TGCTTAAAAATTGCGAACTAAGCTA 58.096 32.000 15.25 5.36 41.04 3.32
5120 7517 0.685097 AGCTACCTCGTTTGCCTTGA 59.315 50.000 0.00 0.00 0.00 3.02
5188 8293 6.958767 ACCTACTATAAAAACTGTGGATGCT 58.041 36.000 0.00 0.00 0.00 3.79
5257 8362 9.416794 GACAGTATGATCCATAACTGAACATAG 57.583 37.037 16.24 0.00 39.69 2.23
5266 8371 6.714810 TCCATAACTGAACATAGCAAGTTTGT 59.285 34.615 0.00 0.00 0.00 2.83
5282 8387 9.023962 AGCAAGTTTGTGAGGAATTAATAATGA 57.976 29.630 0.00 0.00 0.00 2.57
5329 8434 5.739959 TGCTAACATAGAACCACAGCATAA 58.260 37.500 0.00 0.00 32.94 1.90
5332 8437 7.134815 GCTAACATAGAACCACAGCATAATTG 58.865 38.462 0.00 0.00 0.00 2.32
5354 8459 2.007608 CACTGCATCAGTCATCACCAG 58.992 52.381 0.00 0.00 43.43 4.00
5357 8462 3.244665 ACTGCATCAGTCATCACCAGAAA 60.245 43.478 0.00 0.00 41.21 2.52
5362 8467 6.127083 TGCATCAGTCATCACCAGAAATACTA 60.127 38.462 0.00 0.00 0.00 1.82
5365 8470 8.824781 CATCAGTCATCACCAGAAATACTAAAG 58.175 37.037 0.00 0.00 0.00 1.85
5391 8496 9.173939 GAAAATGCATAACATAACTGAGCATAC 57.826 33.333 0.00 0.00 40.00 2.39
5438 8544 6.615264 AACTGAACATGAAGCATAGCATAG 57.385 37.500 0.00 0.00 0.00 2.23
5439 8545 5.678583 ACTGAACATGAAGCATAGCATAGT 58.321 37.500 0.00 0.00 0.00 2.12
5441 8547 6.259608 ACTGAACATGAAGCATAGCATAGTTC 59.740 38.462 0.00 0.00 35.52 3.01
5442 8548 6.114767 TGAACATGAAGCATAGCATAGTTCA 58.885 36.000 0.00 1.54 38.56 3.18
5443 8549 5.998454 ACATGAAGCATAGCATAGTTCAC 57.002 39.130 0.00 0.00 30.25 3.18
5444 8550 4.818546 ACATGAAGCATAGCATAGTTCACC 59.181 41.667 0.00 0.00 30.25 4.02
5445 8551 3.457234 TGAAGCATAGCATAGTTCACCG 58.543 45.455 0.00 0.00 0.00 4.94
5460 8566 1.153369 ACCGAATCGCACCATCCAG 60.153 57.895 0.00 0.00 0.00 3.86
5463 8569 0.933097 CGAATCGCACCATCCAGAAG 59.067 55.000 0.00 0.00 0.00 2.85
5465 8571 1.936547 GAATCGCACCATCCAGAAGAC 59.063 52.381 0.00 0.00 0.00 3.01
5466 8572 0.904649 ATCGCACCATCCAGAAGACA 59.095 50.000 0.00 0.00 0.00 3.41
5467 8573 0.684535 TCGCACCATCCAGAAGACAA 59.315 50.000 0.00 0.00 0.00 3.18
5468 8574 1.081892 CGCACCATCCAGAAGACAAG 58.918 55.000 0.00 0.00 0.00 3.16
5469 8575 1.609061 CGCACCATCCAGAAGACAAGT 60.609 52.381 0.00 0.00 0.00 3.16
5470 8576 2.079925 GCACCATCCAGAAGACAAGTC 58.920 52.381 0.00 0.00 0.00 3.01
5471 8577 2.704572 CACCATCCAGAAGACAAGTCC 58.295 52.381 0.00 0.00 0.00 3.85
5472 8578 2.304180 CACCATCCAGAAGACAAGTCCT 59.696 50.000 0.00 0.00 0.00 3.85
5499 8605 0.182299 TCACACACACTGATGCCCAA 59.818 50.000 0.00 0.00 0.00 4.12
5516 8659 3.684697 GCCCAACTACCTAGATTTCACCC 60.685 52.174 0.00 0.00 0.00 4.61
5522 8665 0.174845 CCTAGATTTCACCCGACGCA 59.825 55.000 0.00 0.00 0.00 5.24
5657 8800 1.074775 CACCCCTGCCAGCTTGTTA 59.925 57.895 0.00 0.00 0.00 2.41
5663 8806 1.327303 CTGCCAGCTTGTTACCCAAA 58.673 50.000 0.00 0.00 31.20 3.28
5690 8833 0.172352 CAGACAGTTCCCTCTCGAGC 59.828 60.000 7.81 0.00 0.00 5.03
5782 8925 0.824759 ATCTTCCAGTAGGCGGTCAC 59.175 55.000 0.00 0.00 33.74 3.67
5923 9066 4.081420 AGCGTCCATAAACTTCTCATGACT 60.081 41.667 0.00 0.00 0.00 3.41
5963 9106 7.861629 ACCAAGTCTTCATGTATTCAGGATTA 58.138 34.615 0.00 0.00 34.35 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
294 304 3.491766 ATGAAGGAGGAGGAGGTGTTA 57.508 47.619 0.00 0.00 0.00 2.41
311 321 3.362581 GCTACGCCAAGCACTATGA 57.637 52.632 0.19 0.00 42.30 2.15
439 455 3.185594 CGTTCAACACACATACGGAACAT 59.814 43.478 0.00 0.00 35.56 2.71
449 466 1.885388 CCTCCGCGTTCAACACACA 60.885 57.895 4.92 0.00 0.00 3.72
606 623 5.365605 ACGGTTTCACCAAGATCCATCTATA 59.634 40.000 0.00 0.00 38.47 1.31
654 672 2.583024 TGATCATGCTGTTGGGAACA 57.417 45.000 0.00 0.00 39.52 3.18
661 679 8.454570 TCATTATGTTACATGATCATGCTGTT 57.545 30.769 31.17 16.84 42.39 3.16
673 691 9.144747 GCTCGACAGAATATCATTATGTTACAT 57.855 33.333 2.58 2.58 0.00 2.29
674 692 8.360390 AGCTCGACAGAATATCATTATGTTACA 58.640 33.333 1.16 0.00 0.00 2.41
675 693 8.749841 AGCTCGACAGAATATCATTATGTTAC 57.250 34.615 1.16 0.00 0.00 2.50
677 695 9.579768 GATAGCTCGACAGAATATCATTATGTT 57.420 33.333 0.00 0.00 30.97 2.71
678 696 8.194104 GGATAGCTCGACAGAATATCATTATGT 58.806 37.037 0.00 0.00 31.64 2.29
679 697 8.193438 TGGATAGCTCGACAGAATATCATTATG 58.807 37.037 0.00 0.00 31.64 1.90
680 698 8.298729 TGGATAGCTCGACAGAATATCATTAT 57.701 34.615 0.00 0.00 31.64 1.28
681 699 7.629437 GCTGGATAGCTCGACAGAATATCATTA 60.629 40.741 13.69 0.00 46.57 1.90
682 700 6.596309 TGGATAGCTCGACAGAATATCATT 57.404 37.500 0.00 0.00 31.64 2.57
683 701 5.394005 GCTGGATAGCTCGACAGAATATCAT 60.394 44.000 13.69 0.00 46.57 2.45
684 702 4.082517 GCTGGATAGCTCGACAGAATATCA 60.083 45.833 13.69 0.00 46.57 2.15
685 703 4.420168 GCTGGATAGCTCGACAGAATATC 58.580 47.826 13.69 0.00 46.57 1.63
686 704 4.448537 GCTGGATAGCTCGACAGAATAT 57.551 45.455 13.69 0.00 46.57 1.28
687 705 3.924918 GCTGGATAGCTCGACAGAATA 57.075 47.619 13.69 0.00 46.57 1.75
688 706 2.810439 GCTGGATAGCTCGACAGAAT 57.190 50.000 13.69 0.00 46.57 2.40
699 717 4.084118 GCTCGCTCAATTTTAGCTGGATAG 60.084 45.833 0.00 0.00 37.85 2.08
700 718 3.809832 GCTCGCTCAATTTTAGCTGGATA 59.190 43.478 0.00 0.00 37.85 2.59
701 719 2.615912 GCTCGCTCAATTTTAGCTGGAT 59.384 45.455 0.00 0.00 37.85 3.41
702 720 2.009774 GCTCGCTCAATTTTAGCTGGA 58.990 47.619 0.00 0.00 37.85 3.86
703 721 1.064654 GGCTCGCTCAATTTTAGCTGG 59.935 52.381 0.00 2.61 37.85 4.85
704 722 1.739466 TGGCTCGCTCAATTTTAGCTG 59.261 47.619 0.00 2.85 37.85 4.24
705 723 2.113860 TGGCTCGCTCAATTTTAGCT 57.886 45.000 7.71 0.00 37.85 3.32
706 724 2.919666 TTGGCTCGCTCAATTTTAGC 57.080 45.000 0.26 0.26 36.60 3.09
707 725 5.916883 CCAATATTGGCTCGCTCAATTTTAG 59.083 40.000 21.32 0.00 42.21 1.85
708 726 5.830912 CCAATATTGGCTCGCTCAATTTTA 58.169 37.500 21.32 0.00 42.21 1.52
709 727 4.685924 CCAATATTGGCTCGCTCAATTTT 58.314 39.130 21.32 6.83 42.21 1.82
710 728 4.311816 CCAATATTGGCTCGCTCAATTT 57.688 40.909 21.32 2.37 42.21 1.82
711 729 3.996150 CCAATATTGGCTCGCTCAATT 57.004 42.857 21.32 0.00 42.21 2.32
721 739 5.159721 GCCGATCTTGACCCAATATTGGC 62.160 52.174 26.53 15.55 44.41 4.52
723 741 3.480470 AGCCGATCTTGACCCAATATTG 58.520 45.455 8.58 8.58 0.00 1.90
724 742 3.744660 GAGCCGATCTTGACCCAATATT 58.255 45.455 0.00 0.00 0.00 1.28
725 743 2.289072 CGAGCCGATCTTGACCCAATAT 60.289 50.000 0.00 0.00 0.00 1.28
726 744 1.068588 CGAGCCGATCTTGACCCAATA 59.931 52.381 0.00 0.00 0.00 1.90
727 745 0.179073 CGAGCCGATCTTGACCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
728 746 1.218047 CGAGCCGATCTTGACCCAA 59.782 57.895 0.00 0.00 0.00 4.12
729 747 1.541310 AACGAGCCGATCTTGACCCA 61.541 55.000 1.50 0.00 0.00 4.51
730 748 0.391263 AAACGAGCCGATCTTGACCC 60.391 55.000 1.50 0.00 0.00 4.46
731 749 1.000145 GAAACGAGCCGATCTTGACC 59.000 55.000 1.50 0.00 0.00 4.02
732 750 1.921230 GAGAAACGAGCCGATCTTGAC 59.079 52.381 1.50 0.00 30.28 3.18
733 751 1.467543 CGAGAAACGAGCCGATCTTGA 60.468 52.381 1.50 0.00 45.77 3.02
734 752 0.917259 CGAGAAACGAGCCGATCTTG 59.083 55.000 1.50 5.25 45.77 3.02
735 753 0.809385 TCGAGAAACGAGCCGATCTT 59.191 50.000 1.50 0.00 46.45 2.40
736 754 2.478989 TCGAGAAACGAGCCGATCT 58.521 52.632 1.50 4.89 46.45 2.75
759 777 9.677567 GAGCTGAGTTTGAACATTTTATGTAAA 57.322 29.630 0.00 0.00 44.07 2.01
760 778 8.845227 TGAGCTGAGTTTGAACATTTTATGTAA 58.155 29.630 0.00 0.00 44.07 2.41
761 779 8.389779 TGAGCTGAGTTTGAACATTTTATGTA 57.610 30.769 0.00 0.00 44.07 2.29
763 781 8.752766 AATGAGCTGAGTTTGAACATTTTATG 57.247 30.769 0.00 0.00 0.00 1.90
764 782 9.415544 GAAATGAGCTGAGTTTGAACATTTTAT 57.584 29.630 0.00 0.00 36.87 1.40
765 783 8.632679 AGAAATGAGCTGAGTTTGAACATTTTA 58.367 29.630 0.00 0.00 36.87 1.52
766 784 7.495055 AGAAATGAGCTGAGTTTGAACATTTT 58.505 30.769 0.00 0.00 36.87 1.82
767 785 7.047460 AGAAATGAGCTGAGTTTGAACATTT 57.953 32.000 0.00 0.00 38.55 2.32
768 786 6.645790 AGAAATGAGCTGAGTTTGAACATT 57.354 33.333 0.00 0.00 0.00 2.71
769 787 6.645790 AAGAAATGAGCTGAGTTTGAACAT 57.354 33.333 0.00 0.00 0.00 2.71
770 788 6.455360 AAAGAAATGAGCTGAGTTTGAACA 57.545 33.333 0.00 0.00 0.00 3.18
771 789 7.761651 AAAAAGAAATGAGCTGAGTTTGAAC 57.238 32.000 0.00 0.00 0.00 3.18
772 790 9.520204 CTTAAAAAGAAATGAGCTGAGTTTGAA 57.480 29.630 0.00 0.00 0.00 2.69
773 791 8.686334 ACTTAAAAAGAAATGAGCTGAGTTTGA 58.314 29.630 0.00 0.00 0.00 2.69
774 792 8.862550 ACTTAAAAAGAAATGAGCTGAGTTTG 57.137 30.769 0.00 0.00 0.00 2.93
775 793 7.857885 CGACTTAAAAAGAAATGAGCTGAGTTT 59.142 33.333 0.00 0.00 0.00 2.66
776 794 7.226720 TCGACTTAAAAAGAAATGAGCTGAGTT 59.773 33.333 0.00 0.00 0.00 3.01
777 795 6.706270 TCGACTTAAAAAGAAATGAGCTGAGT 59.294 34.615 0.00 0.00 0.00 3.41
778 796 7.121974 TCGACTTAAAAAGAAATGAGCTGAG 57.878 36.000 0.00 0.00 0.00 3.35
779 797 7.604164 AGATCGACTTAAAAAGAAATGAGCTGA 59.396 33.333 0.00 0.00 0.00 4.26
780 798 7.746929 AGATCGACTTAAAAAGAAATGAGCTG 58.253 34.615 0.00 0.00 0.00 4.24
781 799 7.201478 CGAGATCGACTTAAAAAGAAATGAGCT 60.201 37.037 0.00 0.00 43.02 4.09
782 800 6.897138 CGAGATCGACTTAAAAAGAAATGAGC 59.103 38.462 0.00 0.00 43.02 4.26
783 801 8.174484 TCGAGATCGACTTAAAAAGAAATGAG 57.826 34.615 0.00 0.00 44.22 2.90
784 802 7.813148 ACTCGAGATCGACTTAAAAAGAAATGA 59.187 33.333 21.68 0.00 44.22 2.57
785 803 7.954447 ACTCGAGATCGACTTAAAAAGAAATG 58.046 34.615 21.68 0.00 44.22 2.32
786 804 7.008447 CGACTCGAGATCGACTTAAAAAGAAAT 59.992 37.037 21.68 0.00 44.22 2.17
787 805 6.304922 CGACTCGAGATCGACTTAAAAAGAAA 59.695 38.462 21.68 0.00 44.22 2.52
788 806 5.793952 CGACTCGAGATCGACTTAAAAAGAA 59.206 40.000 21.68 0.00 44.22 2.52
789 807 5.121298 TCGACTCGAGATCGACTTAAAAAGA 59.879 40.000 25.67 8.92 43.38 2.52
790 808 5.322310 TCGACTCGAGATCGACTTAAAAAG 58.678 41.667 25.67 5.13 43.38 2.27
791 809 5.287170 TCGACTCGAGATCGACTTAAAAA 57.713 39.130 25.67 9.96 43.38 1.94
792 810 4.934075 TCGACTCGAGATCGACTTAAAA 57.066 40.909 25.67 10.49 43.38 1.52
824 842 0.041312 GAGCTGCTCGAGATCGACTC 60.041 60.000 18.75 10.74 44.22 3.36
825 843 0.746204 TGAGCTGCTCGAGATCGACT 60.746 55.000 23.35 5.06 44.22 4.18
826 844 0.591236 GTGAGCTGCTCGAGATCGAC 60.591 60.000 23.35 11.14 44.22 4.20
828 846 1.653835 CGTGAGCTGCTCGAGATCG 60.654 63.158 23.35 17.33 40.25 3.69
829 847 1.724467 TCGTGAGCTGCTCGAGATC 59.276 57.895 23.35 8.44 37.56 2.75
830 848 3.911137 TCGTGAGCTGCTCGAGAT 58.089 55.556 23.35 0.00 37.56 2.75
846 864 4.064266 CTGCAAGAAAAGCTCGAGGCTC 62.064 54.545 15.58 3.87 44.86 4.70
848 866 0.167689 CTGCAAGAAAAGCTCGAGGC 59.832 55.000 15.58 6.83 37.39 4.70
849 867 0.167689 GCTGCAAGAAAAGCTCGAGG 59.832 55.000 15.58 0.00 36.47 4.63
850 868 0.167689 GGCTGCAAGAAAAGCTCGAG 59.832 55.000 8.45 8.45 39.46 4.04
851 869 0.250467 AGGCTGCAAGAAAAGCTCGA 60.250 50.000 0.50 0.00 39.46 4.04
852 870 0.595095 AAGGCTGCAAGAAAAGCTCG 59.405 50.000 0.50 0.00 39.46 5.03
853 871 2.816672 ACTAAGGCTGCAAGAAAAGCTC 59.183 45.455 0.50 0.00 39.46 4.09
854 872 2.816672 GACTAAGGCTGCAAGAAAAGCT 59.183 45.455 0.50 0.00 39.46 3.74
855 873 2.816672 AGACTAAGGCTGCAAGAAAAGC 59.183 45.455 0.50 0.00 38.76 3.51
856 874 4.377841 CGAAGACTAAGGCTGCAAGAAAAG 60.378 45.833 0.50 0.00 34.07 2.27
857 875 3.498397 CGAAGACTAAGGCTGCAAGAAAA 59.502 43.478 0.50 0.00 34.07 2.29
858 876 3.067106 CGAAGACTAAGGCTGCAAGAAA 58.933 45.455 0.50 0.00 34.07 2.52
859 877 2.688507 CGAAGACTAAGGCTGCAAGAA 58.311 47.619 0.50 0.00 34.07 2.52
860 878 1.673033 GCGAAGACTAAGGCTGCAAGA 60.673 52.381 0.50 0.00 34.07 3.02
861 879 0.723981 GCGAAGACTAAGGCTGCAAG 59.276 55.000 0.50 0.00 0.00 4.01
862 880 0.673644 GGCGAAGACTAAGGCTGCAA 60.674 55.000 0.50 0.00 0.00 4.08
863 881 1.079127 GGCGAAGACTAAGGCTGCA 60.079 57.895 0.50 0.00 0.00 4.41
864 882 1.815840 GGGCGAAGACTAAGGCTGC 60.816 63.158 0.00 0.00 32.70 5.25
865 883 1.112113 TAGGGCGAAGACTAAGGCTG 58.888 55.000 0.00 0.00 32.70 4.85
866 884 1.861982 TTAGGGCGAAGACTAAGGCT 58.138 50.000 0.00 0.00 32.70 4.58
867 885 2.685850 TTTAGGGCGAAGACTAAGGC 57.314 50.000 0.00 0.00 32.70 4.35
887 905 1.497286 TGGCAGGGACACTAGGTTTTT 59.503 47.619 0.00 0.00 0.00 1.94
888 906 1.145571 TGGCAGGGACACTAGGTTTT 58.854 50.000 0.00 0.00 0.00 2.43
889 907 1.145571 TTGGCAGGGACACTAGGTTT 58.854 50.000 0.00 0.00 0.00 3.27
890 908 1.145571 TTTGGCAGGGACACTAGGTT 58.854 50.000 0.00 0.00 0.00 3.50
891 909 1.372501 ATTTGGCAGGGACACTAGGT 58.627 50.000 0.00 0.00 0.00 3.08
892 910 2.514458 AATTTGGCAGGGACACTAGG 57.486 50.000 0.00 0.00 0.00 3.02
893 911 5.975693 TTTTAATTTGGCAGGGACACTAG 57.024 39.130 0.00 0.00 0.00 2.57
920 938 2.286523 CGAGGCAGGGACTCCAGTT 61.287 63.158 0.00 0.00 33.37 3.16
927 945 2.435059 GTTCAGCGAGGCAGGGAC 60.435 66.667 0.00 0.00 0.00 4.46
958 980 0.591170 CTGTTGCGTGTTAGTTGGGG 59.409 55.000 0.00 0.00 0.00 4.96
960 982 3.743911 TGATACTGTTGCGTGTTAGTTGG 59.256 43.478 0.00 0.00 0.00 3.77
962 984 3.427528 CGTGATACTGTTGCGTGTTAGTT 59.572 43.478 0.00 0.00 0.00 2.24
997 1020 4.265904 TGCCGTGATACTTCAGAAGAAA 57.734 40.909 17.56 4.89 32.35 2.52
998 1021 3.953712 TGCCGTGATACTTCAGAAGAA 57.046 42.857 17.56 0.00 30.85 2.52
999 1022 3.489229 CGATGCCGTGATACTTCAGAAGA 60.489 47.826 17.56 1.14 30.85 2.87
1000 1023 2.791560 CGATGCCGTGATACTTCAGAAG 59.208 50.000 8.77 8.77 30.85 2.85
1001 1024 2.809446 CGATGCCGTGATACTTCAGAA 58.191 47.619 0.00 0.00 30.85 3.02
1002 1025 2.492019 CGATGCCGTGATACTTCAGA 57.508 50.000 0.00 0.00 30.85 3.27
1077 1117 3.496331 GAGGGGAAGTATGAGAGGAGAG 58.504 54.545 0.00 0.00 0.00 3.20
1101 1153 0.105760 GCAGGATGAGGAGGAGGAGA 60.106 60.000 0.00 0.00 39.69 3.71
1376 1428 1.136611 CGAAAGCTGTAACGCTGTGTC 60.137 52.381 0.00 0.00 40.79 3.67
1377 1429 0.859232 CGAAAGCTGTAACGCTGTGT 59.141 50.000 0.00 0.00 40.79 3.72
1427 1479 8.911247 AAATTCGTGTGAAATTAGGAAATAGC 57.089 30.769 0.00 0.00 37.71 2.97
1478 1530 4.882427 TCCTCATAAACTAGACTCGGAGTG 59.118 45.833 16.72 3.80 0.00 3.51
1600 3840 6.581166 GGAGTTGTTCCAAATTTTACATCGTC 59.419 38.462 0.00 0.00 46.01 4.20
1646 3886 4.104383 ACAAACCATCCAGTCTGAACAT 57.896 40.909 0.00 0.00 0.00 2.71
1715 3955 3.939592 GGGGAGTGAAGAATTAAAGGTCG 59.060 47.826 0.00 0.00 0.00 4.79
1754 3994 2.500098 TCTACTGTATCAAGGCCGCTTT 59.500 45.455 0.00 0.00 0.00 3.51
1881 4162 6.807230 CCAGAAGCAAAGAATGAAAAGATGAG 59.193 38.462 0.00 0.00 0.00 2.90
2025 4306 3.079960 ACAGGAACGACAGCATATACG 57.920 47.619 0.00 0.00 0.00 3.06
2027 4308 7.050970 AGAATTACAGGAACGACAGCATATA 57.949 36.000 0.00 0.00 0.00 0.86
2171 4452 3.006323 TCAATACCGCCTTTTGCAACAAT 59.994 39.130 0.00 0.00 41.33 2.71
2329 4610 0.389426 CAACGAACCGTACCTGGAGG 60.389 60.000 0.00 3.25 39.99 4.30
2359 4640 3.490439 TGAACATGCTTCACAAGGAGA 57.510 42.857 6.62 0.00 30.29 3.71
2375 4656 5.232838 CACAGCCATCTTGAAAAAGTTGAAC 59.767 40.000 0.00 0.00 0.00 3.18
2379 4660 5.343307 AACACAGCCATCTTGAAAAAGTT 57.657 34.783 0.00 0.00 0.00 2.66
2394 4675 8.020819 TCACAGCATTATTAGTTAAAACACAGC 58.979 33.333 0.00 0.00 0.00 4.40
2408 4689 6.266103 CAGGGGAAACATATCACAGCATTATT 59.734 38.462 0.00 0.00 0.00 1.40
2416 4697 1.922447 AGCCAGGGGAAACATATCACA 59.078 47.619 0.00 0.00 0.00 3.58
2431 4712 1.804748 GGTTACACCTCGAAAAGCCAG 59.195 52.381 0.00 0.00 34.73 4.85
2432 4713 1.886886 GGTTACACCTCGAAAAGCCA 58.113 50.000 0.00 0.00 34.73 4.75
2443 4724 6.149633 CAGCAATTCTGTTAAAGGTTACACC 58.850 40.000 0.00 0.00 38.02 4.16
2461 4742 2.835764 ACATGGAAATTCTGCCAGCAAT 59.164 40.909 0.00 0.00 37.64 3.56
2516 4797 9.724839 CATATGCATAATCATTTATCGCAATCA 57.275 29.630 11.13 0.00 36.43 2.57
2526 4807 7.664318 TGTGCTCTCTCATATGCATAATCATTT 59.336 33.333 11.13 0.00 37.76 2.32
2533 4814 5.861727 ACAATGTGCTCTCTCATATGCATA 58.138 37.500 9.27 9.27 37.76 3.14
2555 4836 7.009540 CAGTTGACAAGGAAATTTGTTCAAGAC 59.990 37.037 0.00 0.00 41.15 3.01
2578 4859 8.932791 CGAACATTAGTTTCTTATTGTACCAGT 58.067 33.333 0.00 0.00 38.30 4.00
2638 4919 4.790765 TGATGTCTCAACCTACACTCAG 57.209 45.455 0.00 0.00 0.00 3.35
2701 4982 8.585881 GCATTAGTATATTACTCCTCAAGTCCA 58.414 37.037 0.00 0.00 40.14 4.02
2716 4998 3.583086 AGGTTCCAGCGGCATTAGTATAT 59.417 43.478 1.45 0.00 0.00 0.86
2741 5023 5.878116 TGGCAATAGTTTATGTCTGTACCAC 59.122 40.000 0.00 0.00 0.00 4.16
2742 5024 5.878116 GTGGCAATAGTTTATGTCTGTACCA 59.122 40.000 0.00 0.00 0.00 3.25
2754 5036 3.573538 TGTCAGCAATGTGGCAATAGTTT 59.426 39.130 0.00 0.00 35.83 2.66
2768 5050 1.689984 TGCATTTCCTGTGTCAGCAA 58.310 45.000 0.00 0.00 0.00 3.91
2769 5051 1.913778 ATGCATTTCCTGTGTCAGCA 58.086 45.000 0.00 0.00 34.78 4.41
2770 5052 3.441572 ACTAATGCATTTCCTGTGTCAGC 59.558 43.478 18.75 0.00 0.00 4.26
2771 5053 4.456911 ACACTAATGCATTTCCTGTGTCAG 59.543 41.667 18.75 7.85 32.66 3.51
2772 5054 4.216042 CACACTAATGCATTTCCTGTGTCA 59.784 41.667 24.07 5.33 35.38 3.58
2773 5055 4.726416 CACACTAATGCATTTCCTGTGTC 58.274 43.478 24.07 0.00 35.38 3.67
2774 5056 3.057315 GCACACTAATGCATTTCCTGTGT 60.057 43.478 27.42 25.07 45.39 3.72
2775 5057 3.504863 GCACACTAATGCATTTCCTGTG 58.495 45.455 25.20 25.20 45.39 3.66
2776 5058 3.855689 GCACACTAATGCATTTCCTGT 57.144 42.857 18.75 13.02 45.39 4.00
2808 5090 6.430962 ACTCATGTAGGCAGATGAACATAT 57.569 37.500 0.00 0.00 34.31 1.78
2811 5093 5.876651 ATACTCATGTAGGCAGATGAACA 57.123 39.130 0.00 0.00 34.31 3.18
2812 5094 6.987386 AGTATACTCATGTAGGCAGATGAAC 58.013 40.000 0.00 0.00 34.31 3.18
2813 5095 8.885693 ATAGTATACTCATGTAGGCAGATGAA 57.114 34.615 9.12 0.00 34.31 2.57
2848 5130 9.621629 TGAGAAGAATAAGAGTTGGTTTTGTTA 57.378 29.630 0.00 0.00 0.00 2.41
2849 5131 8.519799 TGAGAAGAATAAGAGTTGGTTTTGTT 57.480 30.769 0.00 0.00 0.00 2.83
2850 5132 8.519799 TTGAGAAGAATAAGAGTTGGTTTTGT 57.480 30.769 0.00 0.00 0.00 2.83
2851 5133 7.592903 GCTTGAGAAGAATAAGAGTTGGTTTTG 59.407 37.037 0.00 0.00 0.00 2.44
2852 5134 7.285401 TGCTTGAGAAGAATAAGAGTTGGTTTT 59.715 33.333 0.00 0.00 0.00 2.43
2853 5135 6.772716 TGCTTGAGAAGAATAAGAGTTGGTTT 59.227 34.615 0.00 0.00 0.00 3.27
2854 5136 6.299141 TGCTTGAGAAGAATAAGAGTTGGTT 58.701 36.000 0.00 0.00 0.00 3.67
2855 5137 5.869579 TGCTTGAGAAGAATAAGAGTTGGT 58.130 37.500 0.00 0.00 0.00 3.67
2856 5138 5.936956 ACTGCTTGAGAAGAATAAGAGTTGG 59.063 40.000 0.00 0.00 0.00 3.77
2857 5139 6.648310 TGACTGCTTGAGAAGAATAAGAGTTG 59.352 38.462 0.00 0.00 0.00 3.16
2858 5140 6.763355 TGACTGCTTGAGAAGAATAAGAGTT 58.237 36.000 0.00 0.00 0.00 3.01
2859 5141 6.352016 TGACTGCTTGAGAAGAATAAGAGT 57.648 37.500 0.00 0.00 0.00 3.24
2860 5142 7.846644 AATGACTGCTTGAGAAGAATAAGAG 57.153 36.000 0.00 0.00 0.00 2.85
2861 5143 8.627208 AAAATGACTGCTTGAGAAGAATAAGA 57.373 30.769 0.00 0.00 0.00 2.10
2865 5147 9.635520 CAATAAAAATGACTGCTTGAGAAGAAT 57.364 29.630 0.00 0.00 0.00 2.40
2866 5148 8.632679 ACAATAAAAATGACTGCTTGAGAAGAA 58.367 29.630 0.00 0.00 0.00 2.52
2867 5149 8.077991 CACAATAAAAATGACTGCTTGAGAAGA 58.922 33.333 0.00 0.00 0.00 2.87
2868 5150 8.077991 TCACAATAAAAATGACTGCTTGAGAAG 58.922 33.333 0.00 0.00 0.00 2.85
2869 5151 7.939782 TCACAATAAAAATGACTGCTTGAGAA 58.060 30.769 0.00 0.00 0.00 2.87
2870 5152 7.509141 TCACAATAAAAATGACTGCTTGAGA 57.491 32.000 0.00 0.00 0.00 3.27
2871 5153 8.077991 TCTTCACAATAAAAATGACTGCTTGAG 58.922 33.333 0.00 0.00 0.00 3.02
2872 5154 7.939782 TCTTCACAATAAAAATGACTGCTTGA 58.060 30.769 0.00 0.00 0.00 3.02
2873 5155 8.482429 GTTCTTCACAATAAAAATGACTGCTTG 58.518 33.333 0.00 0.00 0.00 4.01
2874 5156 7.653311 GGTTCTTCACAATAAAAATGACTGCTT 59.347 33.333 0.00 0.00 0.00 3.91
2875 5157 7.147976 GGTTCTTCACAATAAAAATGACTGCT 58.852 34.615 0.00 0.00 0.00 4.24
2876 5158 6.922957 TGGTTCTTCACAATAAAAATGACTGC 59.077 34.615 0.00 0.00 0.00 4.40
2913 5195 7.871853 TGAAAGAAACTAAAAGGTGCAGATAC 58.128 34.615 0.00 0.00 0.00 2.24
2926 5208 3.634910 GCCAGGTGGTTGAAAGAAACTAA 59.365 43.478 0.00 0.00 37.57 2.24
2943 5225 8.258007 TCCGATTAGACTTAAATATATGCCAGG 58.742 37.037 0.00 0.00 0.00 4.45
2975 5257 4.946157 CCAAATGCTTCTCTCTGGTATTGT 59.054 41.667 0.00 0.00 0.00 2.71
3006 5289 6.097915 ACTCAATTCAAACTAGGAGTCGAA 57.902 37.500 0.00 0.00 30.27 3.71
3008 5291 6.787085 AAACTCAATTCAAACTAGGAGTCG 57.213 37.500 0.00 0.00 34.75 4.18
3024 5307 9.625747 TGCACAATTAGATCCATATAAACTCAA 57.374 29.630 0.00 0.00 0.00 3.02
3025 5308 9.797642 ATGCACAATTAGATCCATATAAACTCA 57.202 29.630 0.00 0.00 0.00 3.41
3027 5310 9.797642 TCATGCACAATTAGATCCATATAAACT 57.202 29.630 0.00 0.00 0.00 2.66
3032 5315 9.916360 ATGTATCATGCACAATTAGATCCATAT 57.084 29.630 0.00 0.00 0.00 1.78
3039 5322 8.780249 CATGAGAATGTATCATGCACAATTAGA 58.220 33.333 3.24 0.00 45.35 2.10
3099 5382 4.837093 AGGACAAAATATCAGTTCCGGA 57.163 40.909 0.00 0.00 0.00 5.14
3145 5428 8.578593 ATCATCTATGCCCAGGAATAGATAAT 57.421 34.615 21.98 13.78 46.46 1.28
3150 5433 6.550938 TGTATCATCTATGCCCAGGAATAG 57.449 41.667 5.41 5.41 35.54 1.73
3156 5439 5.642491 CACTCATTGTATCATCTATGCCCAG 59.358 44.000 0.00 0.00 0.00 4.45
3164 5447 4.847198 TGCCAACACTCATTGTATCATCT 58.153 39.130 0.00 0.00 37.51 2.90
3215 5498 5.070981 TGCTTCTATCCTCTTATCAGTTGGG 59.929 44.000 0.00 0.00 0.00 4.12
3218 5501 7.430760 AACTGCTTCTATCCTCTTATCAGTT 57.569 36.000 0.00 0.00 37.41 3.16
3245 5528 5.661056 TGGTCCAGTACTGTAATTCTGAG 57.339 43.478 21.18 3.10 0.00 3.35
3255 5538 7.050377 ACATTAGAATGATTGGTCCAGTACTG 58.950 38.462 16.34 16.34 39.67 2.74
3332 5615 2.726832 AACGCTGTCCTACTTCAGAC 57.273 50.000 0.00 0.00 34.02 3.51
3340 5623 2.294233 ACACTTTCGTAACGCTGTCCTA 59.706 45.455 0.00 0.00 0.00 2.94
3359 5642 2.975732 TTGAATGCCTTGCAAACACA 57.024 40.000 0.00 0.00 43.62 3.72
3374 5657 5.067674 GCCACATAGGTATGCTGAAATTGAA 59.932 40.000 0.00 0.00 40.61 2.69
3395 5678 1.659622 CTTTCGCATGCAGATGGCCA 61.660 55.000 19.57 8.56 43.89 5.36
3398 5681 2.679837 ACTAACTTTCGCATGCAGATGG 59.320 45.455 19.57 7.03 0.00 3.51
3422 5705 1.282738 TGATGATGCCTCCAAAGCTGA 59.717 47.619 0.00 0.00 0.00 4.26
3539 5822 2.416747 TGGTCAATGAAAGAGACTGCG 58.583 47.619 0.00 0.00 32.98 5.18
3569 5852 5.184892 AGATAGAAGTTTGGAATGGCTGT 57.815 39.130 0.00 0.00 0.00 4.40
3572 5855 6.319658 TGATCAAGATAGAAGTTTGGAATGGC 59.680 38.462 0.00 0.00 0.00 4.40
3808 6091 8.177119 ACTTCTGTAATTTTTAGCATTCCACA 57.823 30.769 0.00 0.00 0.00 4.17
3894 6177 4.451096 TGAAAATGGTCTTCGCTCACTTAC 59.549 41.667 0.00 0.00 0.00 2.34
3975 6258 6.174720 TCTATAAGCGTCTTCCCATTCAAT 57.825 37.500 0.00 0.00 0.00 2.57
4302 6585 5.243060 AGTTTGCCATACCAAAAGAAGGTAC 59.757 40.000 0.00 0.00 43.90 3.34
4306 6589 6.325919 TGTAGTTTGCCATACCAAAAGAAG 57.674 37.500 0.00 0.00 36.55 2.85
4307 6590 6.716934 TTGTAGTTTGCCATACCAAAAGAA 57.283 33.333 0.00 0.00 36.55 2.52
4308 6591 5.278758 GCTTGTAGTTTGCCATACCAAAAGA 60.279 40.000 0.00 0.00 36.55 2.52
4430 6716 0.027586 GGTACTGCAAATAAGCCGCG 59.972 55.000 0.00 0.00 0.00 6.46
4433 6719 6.055588 TCTTCTATGGTACTGCAAATAAGCC 58.944 40.000 0.00 0.00 0.00 4.35
4444 6730 5.265191 TGTCTTCTGCTCTTCTATGGTACT 58.735 41.667 0.00 0.00 0.00 2.73
4525 6811 4.227864 AGGTTCATTAAAGCTCCTGGAG 57.772 45.455 19.55 19.55 41.91 3.86
4625 6915 3.274095 TGTATCATGGCCGTGATCAAA 57.726 42.857 37.85 23.63 39.45 2.69
4655 6945 7.346471 AGAAAGCTGGGCTAATAGAAATACAA 58.654 34.615 0.00 0.00 38.25 2.41
4896 7229 3.200483 ACAACACGAGAAAGTACCCAAC 58.800 45.455 0.00 0.00 0.00 3.77
4911 7244 6.870971 TCTTGAATGTAAAGGGTACAACAC 57.129 37.500 0.00 0.00 0.00 3.32
4945 7302 3.258372 ACGAGTTTCTTCTCCAGCATACA 59.742 43.478 0.00 0.00 0.00 2.29
4966 7323 7.227512 AGTCTGAACCTAGCATATGCATAAAAC 59.772 37.037 28.62 15.53 45.16 2.43
4972 7329 3.963374 AGAGTCTGAACCTAGCATATGCA 59.037 43.478 28.62 13.96 45.16 3.96
4974 7331 6.641169 TGTAGAGTCTGAACCTAGCATATG 57.359 41.667 1.86 0.00 0.00 1.78
4978 7366 8.762481 TTTATATGTAGAGTCTGAACCTAGCA 57.238 34.615 1.86 0.00 0.00 3.49
4992 7380 9.928618 TTGGGATTTCATGGTTTTATATGTAGA 57.071 29.630 0.00 0.00 0.00 2.59
5008 7396 5.395103 CCAAGAAACAACTGTTGGGATTTCA 60.395 40.000 24.59 0.00 38.44 2.69
5047 7443 9.612620 CTTGAACCATTTTCATACTAGTTTGAC 57.387 33.333 14.66 3.17 0.00 3.18
5064 7460 8.500753 TTTTAAGCATATCGTACTTGAACCAT 57.499 30.769 0.00 0.00 0.00 3.55
5079 7476 7.535139 AGCTTAGTTCGCAATTTTTAAGCATA 58.465 30.769 14.23 0.00 43.18 3.14
5091 7488 1.542915 ACGAGGTAGCTTAGTTCGCAA 59.457 47.619 0.00 0.00 34.84 4.85
5092 7489 1.171308 ACGAGGTAGCTTAGTTCGCA 58.829 50.000 0.00 0.00 34.84 5.10
5093 7490 2.274920 AACGAGGTAGCTTAGTTCGC 57.725 50.000 9.87 0.00 34.84 4.70
5094 7491 2.344741 GCAAACGAGGTAGCTTAGTTCG 59.655 50.000 14.28 7.80 37.31 3.95
5095 7492 2.671888 GGCAAACGAGGTAGCTTAGTTC 59.328 50.000 14.28 6.04 0.00 3.01
5098 7495 2.673368 CAAGGCAAACGAGGTAGCTTAG 59.327 50.000 0.00 0.00 0.00 2.18
5099 7496 2.300723 TCAAGGCAAACGAGGTAGCTTA 59.699 45.455 0.00 0.00 0.00 3.09
5100 7497 1.071699 TCAAGGCAAACGAGGTAGCTT 59.928 47.619 0.00 0.00 0.00 3.74
5101 7498 0.685097 TCAAGGCAAACGAGGTAGCT 59.315 50.000 0.00 0.00 0.00 3.32
5103 7500 3.040147 TCTTCAAGGCAAACGAGGTAG 57.960 47.619 0.00 0.00 0.00 3.18
5104 7501 3.007506 TGATCTTCAAGGCAAACGAGGTA 59.992 43.478 0.00 0.00 0.00 3.08
5105 7502 2.224523 TGATCTTCAAGGCAAACGAGGT 60.225 45.455 0.00 0.00 0.00 3.85
5238 8343 6.653020 ACTTGCTATGTTCAGTTATGGATCA 58.347 36.000 0.00 0.00 0.00 2.92
5240 8345 7.394359 ACAAACTTGCTATGTTCAGTTATGGAT 59.606 33.333 0.00 0.00 0.00 3.41
5257 8362 9.807649 ATCATTATTAATTCCTCACAAACTTGC 57.192 29.630 0.00 0.00 0.00 4.01
5282 8387 8.400947 GCAAGTGATGTTCTGTTATGTTATGAT 58.599 33.333 0.00 0.00 0.00 2.45
5302 8407 4.142816 GCTGTGGTTCTATGTTAGCAAGTG 60.143 45.833 0.00 0.00 0.00 3.16
5303 8408 4.003648 GCTGTGGTTCTATGTTAGCAAGT 58.996 43.478 0.00 0.00 0.00 3.16
5329 8434 3.688185 GTGATGACTGATGCAGTGTCAAT 59.312 43.478 18.53 10.32 45.44 2.57
5332 8437 2.005451 GGTGATGACTGATGCAGTGTC 58.995 52.381 4.60 8.88 45.44 3.67
5362 8467 8.306038 TGCTCAGTTATGTTATGCATTTTCTTT 58.694 29.630 3.54 0.00 38.94 2.52
5365 8470 9.173939 GTATGCTCAGTTATGTTATGCATTTTC 57.826 33.333 3.54 0.00 39.79 2.29
5399 8504 5.066375 TGTTCAGTTATGTTATGAGCCATGC 59.934 40.000 0.00 0.00 0.00 4.06
5404 8509 6.909357 GCTTCATGTTCAGTTATGTTATGAGC 59.091 38.462 0.00 0.00 0.00 4.26
5405 8510 7.977904 TGCTTCATGTTCAGTTATGTTATGAG 58.022 34.615 0.00 0.00 0.00 2.90
5438 8544 0.373716 GATGGTGCGATTCGGTGAAC 59.626 55.000 8.34 0.00 0.00 3.18
5439 8545 0.742990 GGATGGTGCGATTCGGTGAA 60.743 55.000 8.34 0.00 0.00 3.18
5441 8547 1.431488 CTGGATGGTGCGATTCGGTG 61.431 60.000 8.34 0.00 0.00 4.94
5442 8548 1.153369 CTGGATGGTGCGATTCGGT 60.153 57.895 8.34 0.00 0.00 4.69
5443 8549 0.461870 TTCTGGATGGTGCGATTCGG 60.462 55.000 8.34 0.00 0.00 4.30
5444 8550 0.933097 CTTCTGGATGGTGCGATTCG 59.067 55.000 0.62 0.62 0.00 3.34
5445 8551 1.936547 GTCTTCTGGATGGTGCGATTC 59.063 52.381 0.00 0.00 0.00 2.52
5469 8575 1.899814 GTGTGTGTGATGTCCCTAGGA 59.100 52.381 11.48 0.00 0.00 2.94
5470 8576 1.902508 AGTGTGTGTGATGTCCCTAGG 59.097 52.381 0.06 0.06 0.00 3.02
5471 8577 2.562738 TCAGTGTGTGTGATGTCCCTAG 59.437 50.000 0.00 0.00 0.00 3.02
5472 8578 2.604139 TCAGTGTGTGTGATGTCCCTA 58.396 47.619 0.00 0.00 0.00 3.53
5485 8591 1.003580 AGGTAGTTGGGCATCAGTGTG 59.996 52.381 0.00 0.00 0.00 3.82
5494 8600 3.542648 GGTGAAATCTAGGTAGTTGGGC 58.457 50.000 0.00 0.00 0.00 5.36
5499 8605 2.686915 CGTCGGGTGAAATCTAGGTAGT 59.313 50.000 0.00 0.00 0.00 2.73
5516 8659 1.517257 GGACAGGATCAGTGCGTCG 60.517 63.158 0.00 0.00 0.00 5.12
5522 8665 3.371273 CCAACATCATGGACAGGATCAGT 60.371 47.826 0.00 0.00 43.54 3.41
5657 8800 0.468226 TGTCTGACGAGCTTTTGGGT 59.532 50.000 2.98 0.00 0.00 4.51
5663 8806 0.318762 GGGAACTGTCTGACGAGCTT 59.681 55.000 2.98 0.69 0.00 3.74
5903 9046 6.655003 TGGAAAGTCATGAGAAGTTTATGGAC 59.345 38.462 0.00 0.00 0.00 4.02
5923 9066 4.466370 AGACTTGGTACGAGATCATGGAAA 59.534 41.667 0.00 0.00 0.00 3.13
5993 9136 2.039818 AGCACATTGAGGAGCTGATG 57.960 50.000 0.00 0.00 35.72 3.07
6029 9172 0.106335 AGATGCTGATGGAGAAGGCG 59.894 55.000 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.