Multiple sequence alignment - TraesCS4A01G086400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G086400 chr4A 100.000 4041 0 0 1 4041 90590203 90594243 0.000000e+00 7463.0
1 TraesCS4A01G086400 chr4A 82.345 725 76 36 749 1453 90518664 90519356 2.090000e-162 582.0
2 TraesCS4A01G086400 chr4A 81.068 206 35 4 1221 1424 90505918 90506121 1.160000e-35 161.0
3 TraesCS4A01G086400 chr4A 100.000 36 0 0 2486 2521 90423644 90423679 2.610000e-07 67.6
4 TraesCS4A01G086400 chr4A 100.000 33 0 0 2486 2518 75919920 75919952 1.210000e-05 62.1
5 TraesCS4A01G086400 chr4A 100.000 33 0 0 2486 2518 601062451 601062483 1.210000e-05 62.1
6 TraesCS4A01G086400 chr4B 91.483 1679 102 20 1 1646 459948264 459946594 0.000000e+00 2270.0
7 TraesCS4A01G086400 chr4B 89.064 887 47 28 1831 2706 459946596 459945749 0.000000e+00 1055.0
8 TraesCS4A01G086400 chr4B 92.462 597 24 9 2769 3364 459945662 459945086 0.000000e+00 833.0
9 TraesCS4A01G086400 chr4B 82.425 734 77 41 749 1463 460032565 460031865 9.670000e-166 593.0
10 TraesCS4A01G086400 chr4B 94.536 183 8 2 1644 1826 5552582 5552762 8.550000e-72 281.0
11 TraesCS4A01G086400 chr4B 83.333 264 12 6 3533 3776 459944643 459944392 8.800000e-52 215.0
12 TraesCS4A01G086400 chr4B 88.535 157 13 5 3356 3511 459944968 459944816 6.900000e-43 185.0
13 TraesCS4A01G086400 chr4B 84.211 171 12 5 3886 4041 459944089 459943919 7.000000e-33 152.0
14 TraesCS4A01G086400 chr4B 100.000 33 0 0 2486 2518 5468331 5468363 1.210000e-05 62.1
15 TraesCS4A01G086400 chr4B 100.000 33 0 0 2486 2518 484581823 484581855 1.210000e-05 62.1
16 TraesCS4A01G086400 chr4D 93.614 1519 77 8 1 1511 373859048 373857542 0.000000e+00 2250.0
17 TraesCS4A01G086400 chr4D 89.335 647 41 13 1991 2627 373856533 373855905 0.000000e+00 787.0
18 TraesCS4A01G086400 chr4D 88.764 623 45 9 2966 3588 373855637 373855040 0.000000e+00 739.0
19 TraesCS4A01G086400 chr4D 83.311 737 73 38 749 1463 373934085 373933377 5.700000e-178 634.0
20 TraesCS4A01G086400 chr4D 96.124 129 3 2 1815 1942 373856661 373856534 4.090000e-50 209.0
21 TraesCS4A01G086400 chr4D 81.068 206 35 4 1221 1424 374035863 374035660 1.160000e-35 161.0
22 TraesCS4A01G086400 chr4D 100.000 39 0 0 2744 2782 301005905 301005867 5.600000e-09 73.1
23 TraesCS4A01G086400 chr4D 97.222 36 1 0 2486 2521 3586209 3586174 1.210000e-05 62.1
24 TraesCS4A01G086400 chr4D 100.000 33 0 0 2486 2518 394385914 394385946 1.210000e-05 62.1
25 TraesCS4A01G086400 chr4D 96.875 32 1 0 2753 2784 499576765 499576796 2.000000e-03 54.7
26 TraesCS4A01G086400 chr3A 99.394 165 1 0 1646 1810 151012969 151013133 2.360000e-77 300.0
27 TraesCS4A01G086400 chr3A 95.000 180 8 1 1638 1816 202826965 202826786 8.550000e-72 281.0
28 TraesCS4A01G086400 chr3B 96.532 173 6 0 1637 1809 548082613 548082441 1.840000e-73 287.0
29 TraesCS4A01G086400 chr3B 86.517 89 11 1 2697 2784 561542807 561542895 3.320000e-16 97.1
30 TraesCS4A01G086400 chr2B 93.717 191 9 3 1641 1830 757232694 757232506 2.380000e-72 283.0
31 TraesCS4A01G086400 chr2B 87.629 97 11 1 2698 2794 546987571 546987476 1.190000e-20 111.0
32 TraesCS4A01G086400 chr2B 100.000 29 0 0 2486 2514 68585083 68585055 2.000000e-03 54.7
33 TraesCS4A01G086400 chr1A 94.565 184 9 1 1634 1816 568688438 568688255 2.380000e-72 283.0
34 TraesCS4A01G086400 chr1A 94.054 185 9 2 1634 1816 576665480 576665664 3.080000e-71 279.0
35 TraesCS4A01G086400 chr1A 92.308 91 7 0 2692 2782 304031882 304031972 3.280000e-26 130.0
36 TraesCS4A01G086400 chr1A 100.000 30 0 0 2753 2782 352872443 352872414 5.640000e-04 56.5
37 TraesCS4A01G086400 chr6B 94.086 186 8 2 1625 1809 48412056 48412239 3.080000e-71 279.0
38 TraesCS4A01G086400 chr6B 90.323 93 8 1 2698 2789 560192829 560192921 1.970000e-23 121.0
39 TraesCS4A01G086400 chr6B 92.593 81 5 1 2710 2789 540593359 540593279 9.180000e-22 115.0
40 TraesCS4A01G086400 chr6A 94.022 184 9 2 1627 1810 213176832 213176651 1.110000e-70 278.0
41 TraesCS4A01G086400 chr6A 93.162 117 8 0 993 1109 129316991 129317107 5.370000e-39 172.0
42 TraesCS4A01G086400 chr6A 89.247 93 9 1 2698 2789 500508005 500507913 9.180000e-22 115.0
43 TraesCS4A01G086400 chr6A 81.609 87 6 4 2696 2782 569998836 569998912 3.370000e-06 63.9
44 TraesCS4A01G086400 chrUn 92.126 127 10 0 1225 1351 478858017 478857891 3.210000e-41 180.0
45 TraesCS4A01G086400 chr1D 92.742 124 9 0 1228 1351 469887145 469887022 3.210000e-41 180.0
46 TraesCS4A01G086400 chr1D 100.000 30 0 0 2753 2782 280718988 280718959 5.640000e-04 56.5
47 TraesCS4A01G086400 chr5B 94.643 112 6 0 999 1110 445173803 445173914 1.490000e-39 174.0
48 TraesCS4A01G086400 chr6D 93.860 114 7 0 993 1106 106048839 106048952 5.370000e-39 172.0
49 TraesCS4A01G086400 chr6D 97.561 41 1 0 2742 2782 472932529 472932489 2.010000e-08 71.3
50 TraesCS4A01G086400 chr7B 90.476 126 8 3 969 1094 681849904 681850025 3.230000e-36 163.0
51 TraesCS4A01G086400 chr7B 85.263 95 11 3 2698 2790 699840766 699840673 1.200000e-15 95.3
52 TraesCS4A01G086400 chr7B 86.364 88 10 2 2698 2784 699840682 699840768 1.200000e-15 95.3
53 TraesCS4A01G086400 chr2D 93.023 86 5 1 2698 2783 467971343 467971427 1.520000e-24 124.0
54 TraesCS4A01G086400 chr2D 89.247 93 8 2 2698 2789 467971426 467971335 9.180000e-22 115.0
55 TraesCS4A01G086400 chr5A 94.737 76 4 0 2708 2783 564602375 564602300 7.100000e-23 119.0
56 TraesCS4A01G086400 chr2A 88.660 97 10 1 2698 2794 608647358 608647263 2.550000e-22 117.0
57 TraesCS4A01G086400 chr7D 100.000 30 0 0 2753 2782 46759359 46759388 5.640000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G086400 chr4A 90590203 90594243 4040 False 7463.00 7463 100.000000 1 4041 1 chr4A.!!$F5 4040
1 TraesCS4A01G086400 chr4A 90518664 90519356 692 False 582.00 582 82.345000 749 1453 1 chr4A.!!$F4 704
2 TraesCS4A01G086400 chr4B 459943919 459948264 4345 True 785.00 2270 88.181333 1 4041 6 chr4B.!!$R2 4040
3 TraesCS4A01G086400 chr4B 460031865 460032565 700 True 593.00 593 82.425000 749 1463 1 chr4B.!!$R1 714
4 TraesCS4A01G086400 chr4D 373855040 373859048 4008 True 996.25 2250 91.959250 1 3588 4 chr4D.!!$R5 3587
5 TraesCS4A01G086400 chr4D 373933377 373934085 708 True 634.00 634 83.311000 749 1463 1 chr4D.!!$R3 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 490 0.174617 AAGCCTCTAGAGCGTTCTGC 59.825 55.0 14.73 10.91 46.98 4.26 F
1659 2458 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.0 0.00 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2593 1.020437 CGTAGTACTCCCTCCGTTCC 58.980 60.0 0.0 0.0 0.0 3.62 R
3461 4496 0.030504 CCAATCAACGCTGCAACACA 59.969 50.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 4.496336 GGCTCCAGGGCAGCGATT 62.496 66.667 0.00 0.00 37.81 3.34
68 69 2.301346 CTCCAGGGCAGCGATTAATTT 58.699 47.619 0.00 0.00 0.00 1.82
97 98 1.948834 CAGCACCAGTGACACAAATCA 59.051 47.619 8.59 0.00 0.00 2.57
118 119 1.184431 TGTCGGTGGACGCCTTAATA 58.816 50.000 0.00 0.00 46.49 0.98
122 123 1.931172 CGGTGGACGCCTTAATAAGTG 59.069 52.381 0.00 0.00 34.82 3.16
319 321 3.078837 GTGAGGCTATGTTTCGGGAAAA 58.921 45.455 0.00 0.00 31.33 2.29
320 322 3.504520 GTGAGGCTATGTTTCGGGAAAAA 59.495 43.478 0.00 0.00 31.33 1.94
321 323 4.157840 GTGAGGCTATGTTTCGGGAAAAAT 59.842 41.667 2.63 2.63 33.18 1.82
438 441 4.463891 ACAAATGCCCTGAAAACCATAGAG 59.536 41.667 0.00 0.00 0.00 2.43
486 489 1.748493 AGAAGCCTCTAGAGCGTTCTG 59.252 52.381 23.90 9.60 34.79 3.02
487 490 0.174617 AAGCCTCTAGAGCGTTCTGC 59.825 55.000 14.73 10.91 46.98 4.26
534 542 0.249238 GATCTACCAGCAGCTCCACG 60.249 60.000 0.00 0.00 0.00 4.94
577 585 1.455959 TAGAAGCCTCTCCGCTCCC 60.456 63.158 0.00 0.00 38.44 4.30
690 711 1.153647 CCATTAGTGACGGCGAGCA 60.154 57.895 16.62 8.72 0.00 4.26
745 766 0.679505 TAAAGGTCTCACACGCAGCT 59.320 50.000 0.00 0.00 0.00 4.24
861 893 2.789323 ATATAAGGACGACCCCCACT 57.211 50.000 0.00 0.00 36.73 4.00
866 899 2.037527 GACGACCCCCACTCTCCT 59.962 66.667 0.00 0.00 0.00 3.69
911 944 2.047844 CAGAGTGCAGACCACCCG 60.048 66.667 0.00 0.00 45.83 5.28
963 1015 1.079819 CTCGCGAAGGAGGAAGCAA 60.080 57.895 11.33 0.00 0.00 3.91
1188 1243 2.837532 TCTTGGATTTTGGCTTTGGC 57.162 45.000 0.00 0.00 37.82 4.52
1201 1256 1.078214 TTTGGCTGATCCGCTCTGG 60.078 57.895 9.11 0.00 37.80 3.86
1475 1531 5.538118 ACAAATTAGCTACCTTTTGTTGGC 58.462 37.500 16.96 0.00 38.72 4.52
1511 2306 4.400845 CGACAGTCTCTCGTTCGATAAAA 58.599 43.478 0.00 0.00 0.00 1.52
1512 2307 4.492645 CGACAGTCTCTCGTTCGATAAAAG 59.507 45.833 0.00 0.00 0.00 2.27
1528 2323 3.591196 AAAAGTTGCTGCTTTGTGTGA 57.409 38.095 0.00 0.00 38.54 3.58
1542 2341 3.226346 TGTGTGATAGTCGTACAAGGC 57.774 47.619 0.00 0.00 0.00 4.35
1571 2370 2.531522 CATGTATGCTGGATGTCCGA 57.468 50.000 0.00 0.00 39.43 4.55
1584 2383 1.212229 GTCCGACAGTCTCCCGTTC 59.788 63.158 0.00 0.00 0.00 3.95
1604 2403 5.116983 CGTTCGATAAAAATTGCTGCTTTGT 59.883 36.000 0.00 0.00 0.00 2.83
1605 2404 6.291385 GTTCGATAAAAATTGCTGCTTTGTG 58.709 36.000 0.00 0.00 0.00 3.33
1614 2413 1.308998 GCTGCTTTGTGTGGTGTAGT 58.691 50.000 0.00 0.00 0.00 2.73
1632 2431 5.887035 GTGTAGTCACTAGTCATAGAAGGGT 59.113 44.000 0.00 0.00 40.98 4.34
1636 2435 6.912426 AGTCACTAGTCATAGAAGGGTATGA 58.088 40.000 0.00 0.00 37.13 2.15
1646 2445 7.661437 GTCATAGAAGGGTATGATTTGCATGTA 59.339 37.037 0.00 0.00 40.66 2.29
1647 2446 7.661437 TCATAGAAGGGTATGATTTGCATGTAC 59.339 37.037 0.00 0.00 37.87 2.90
1648 2447 6.006275 AGAAGGGTATGATTTGCATGTACT 57.994 37.500 0.00 0.00 37.87 2.73
1649 2448 6.058183 AGAAGGGTATGATTTGCATGTACTC 58.942 40.000 0.00 0.00 37.87 2.59
1650 2449 4.718961 AGGGTATGATTTGCATGTACTCC 58.281 43.478 0.00 0.00 37.87 3.85
1651 2450 3.821033 GGGTATGATTTGCATGTACTCCC 59.179 47.826 0.00 0.00 37.87 4.30
1653 2452 4.757149 GGTATGATTTGCATGTACTCCCTC 59.243 45.833 0.00 0.00 37.87 4.30
1654 2453 3.281727 TGATTTGCATGTACTCCCTCC 57.718 47.619 0.00 0.00 0.00 4.30
1655 2454 2.213499 GATTTGCATGTACTCCCTCCG 58.787 52.381 0.00 0.00 0.00 4.63
1656 2455 0.981183 TTTGCATGTACTCCCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
1657 2456 0.981183 TTGCATGTACTCCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
1658 2457 0.535335 TGCATGTACTCCCTCCGTTC 59.465 55.000 0.00 0.00 0.00 3.95
1659 2458 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
1660 2459 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
1661 2460 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
1662 2461 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
1663 2462 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
1664 2463 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
1665 2464 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
1666 2465 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
1667 2466 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
1668 2467 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
1669 2468 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
1670 2469 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
1671 2470 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
1672 2471 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
1673 2472 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1674 2473 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1675 2474 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
1676 2475 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
1677 2476 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
1678 2477 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
1679 2478 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
1680 2479 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
1681 2480 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
1682 2481 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
1683 2482 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
1684 2483 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
1686 2485 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
1687 2486 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
1688 2487 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
1689 2488 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
1690 2489 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
1691 2490 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
1692 2491 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
1693 2492 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
1694 2493 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
1695 2494 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
1696 2495 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
1697 2496 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
1698 2497 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
1699 2498 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
1700 2499 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
1701 2500 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
1702 2501 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
1703 2502 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
1704 2503 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
1705 2504 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1706 2505 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1707 2506 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1708 2507 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1709 2508 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1710 2509 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1711 2510 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1712 2511 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1713 2512 6.216801 AGTGACTACATACGGAGCAAAATA 57.783 37.500 0.00 0.00 0.00 1.40
1714 2513 6.636705 AGTGACTACATACGGAGCAAAATAA 58.363 36.000 0.00 0.00 0.00 1.40
1715 2514 7.101054 AGTGACTACATACGGAGCAAAATAAA 58.899 34.615 0.00 0.00 0.00 1.40
1716 2515 7.769044 AGTGACTACATACGGAGCAAAATAAAT 59.231 33.333 0.00 0.00 0.00 1.40
1717 2516 7.850982 GTGACTACATACGGAGCAAAATAAATG 59.149 37.037 0.00 0.00 0.00 2.32
1718 2517 7.766738 TGACTACATACGGAGCAAAATAAATGA 59.233 33.333 0.00 0.00 0.00 2.57
1719 2518 8.500753 ACTACATACGGAGCAAAATAAATGAA 57.499 30.769 0.00 0.00 0.00 2.57
1720 2519 9.120538 ACTACATACGGAGCAAAATAAATGAAT 57.879 29.630 0.00 0.00 0.00 2.57
1721 2520 9.599322 CTACATACGGAGCAAAATAAATGAATC 57.401 33.333 0.00 0.00 0.00 2.52
1722 2521 8.225603 ACATACGGAGCAAAATAAATGAATCT 57.774 30.769 0.00 0.00 0.00 2.40
1723 2522 9.337396 ACATACGGAGCAAAATAAATGAATCTA 57.663 29.630 0.00 0.00 0.00 1.98
1727 2526 9.561069 ACGGAGCAAAATAAATGAATCTATACT 57.439 29.630 0.00 0.00 0.00 2.12
1769 2568 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
1770 2569 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
1771 2570 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
1772 2571 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
1773 2572 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
1774 2573 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
1775 2574 8.879759 CCGTATGTAGTAGTCATTTGAAATGTT 58.120 33.333 16.62 9.61 0.00 2.71
1801 2600 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
1802 2601 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1803 2602 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1804 2603 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1805 2604 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1806 2605 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1807 2606 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1808 2607 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1809 2608 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
1810 2609 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
1811 2610 4.591321 TTTAGGAACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 0.00 1.82
1812 2611 2.433662 AGGAACGGAGGGAGTACTAC 57.566 55.000 0.00 0.00 0.00 2.73
1830 2629 4.146564 ACTACGTAATTTGTTTGGGCCTT 58.853 39.130 4.53 0.00 0.00 4.35
1831 2630 3.378911 ACGTAATTTGTTTGGGCCTTG 57.621 42.857 4.53 0.00 0.00 3.61
1841 2640 0.112218 TTGGGCCTTGTGCTGTATGT 59.888 50.000 4.53 0.00 40.92 2.29
1943 2750 8.522003 TGTGACTATTATGATGTGCAATTTTGT 58.478 29.630 0.00 0.00 0.00 2.83
1944 2751 9.357652 GTGACTATTATGATGTGCAATTTTGTT 57.642 29.630 0.00 0.00 0.00 2.83
1980 2787 6.829811 TCAATCCAGATGCTGAAATGTGATAA 59.170 34.615 0.00 0.00 32.44 1.75
2065 2872 1.479323 GGTGGCATGTGATTTCTGCAT 59.521 47.619 0.00 0.00 37.64 3.96
2085 2892 6.851609 TGCATTGTTAATTGTCCATGTACTC 58.148 36.000 0.00 0.00 0.00 2.59
2086 2893 6.127758 TGCATTGTTAATTGTCCATGTACTCC 60.128 38.462 0.00 0.00 0.00 3.85
2087 2894 6.095440 GCATTGTTAATTGTCCATGTACTCCT 59.905 38.462 0.00 0.00 0.00 3.69
2088 2895 7.282224 GCATTGTTAATTGTCCATGTACTCCTA 59.718 37.037 0.00 0.00 0.00 2.94
2089 2896 8.612619 CATTGTTAATTGTCCATGTACTCCTAC 58.387 37.037 0.00 0.00 0.00 3.18
2110 2917 3.630312 ACGTGTTCCATTAGCTTGTTGTT 59.370 39.130 0.00 0.00 0.00 2.83
2153 2960 5.453198 GGTTGAGTGGTTTGATGGTTGATTT 60.453 40.000 0.00 0.00 0.00 2.17
2179 2987 4.661125 TGCGCTTGCAGAAATTATAGTTG 58.339 39.130 9.73 0.00 45.56 3.16
2196 3004 3.412386 AGTTGATTAGGCCAGTCACAAC 58.588 45.455 5.01 14.21 37.14 3.32
2197 3005 3.073062 AGTTGATTAGGCCAGTCACAACT 59.927 43.478 20.94 20.94 40.58 3.16
2198 3006 3.334583 TGATTAGGCCAGTCACAACTC 57.665 47.619 5.01 0.00 31.71 3.01
2199 3007 2.637382 TGATTAGGCCAGTCACAACTCA 59.363 45.455 5.01 0.00 31.71 3.41
2200 3008 2.543777 TTAGGCCAGTCACAACTCAC 57.456 50.000 5.01 0.00 31.71 3.51
2201 3009 1.419381 TAGGCCAGTCACAACTCACA 58.581 50.000 5.01 0.00 31.71 3.58
2202 3010 0.546122 AGGCCAGTCACAACTCACAA 59.454 50.000 5.01 0.00 31.71 3.33
2313 3123 7.940178 TGTGTCATGTAGTAACTGTTTACTG 57.060 36.000 0.00 0.00 46.23 2.74
2381 3191 6.801539 TCTGTTTCATACCTTTGCTTACAG 57.198 37.500 0.00 0.00 33.58 2.74
2389 3199 8.313944 TCATACCTTTGCTTACAGGATAAGTA 57.686 34.615 0.00 0.00 33.90 2.24
2393 3203 7.104290 ACCTTTGCTTACAGGATAAGTAGTTC 58.896 38.462 0.00 0.00 33.90 3.01
2413 3223 6.681777 AGTTCACAGGAAATATTTGTGCTTC 58.318 36.000 5.17 3.35 41.41 3.86
2416 3226 4.860907 CACAGGAAATATTTGTGCTTCTGC 59.139 41.667 5.17 0.00 36.20 4.26
2525 3335 4.885426 CAGCAACCAGGTGTGACT 57.115 55.556 0.00 0.00 40.80 3.41
2527 3337 2.254546 CAGCAACCAGGTGTGACTAA 57.745 50.000 0.00 0.00 40.80 2.24
2648 3466 6.493115 TGTTCTTGAAGAAAGATGGCCAAATA 59.507 34.615 10.96 0.00 44.46 1.40
2650 3468 8.686334 GTTCTTGAAGAAAGATGGCCAAATATA 58.314 33.333 10.96 0.00 44.46 0.86
2677 3495 6.535865 CCATGATGAGCTAGCATTAGATCTTC 59.464 42.308 18.83 12.01 41.73 2.87
2706 3531 9.710818 TGGTTTCTCAAATATACTACTACCTCT 57.289 33.333 0.00 0.00 0.00 3.69
2711 3536 9.796180 TCTCAAATATACTACTACCTCTCTTCC 57.204 37.037 0.00 0.00 0.00 3.46
2712 3537 9.802039 CTCAAATATACTACTACCTCTCTTCCT 57.198 37.037 0.00 0.00 0.00 3.36
2720 3545 8.896722 ACTACTACCTCTCTTCCTAAAAATCA 57.103 34.615 0.00 0.00 0.00 2.57
2722 3547 9.191479 CTACTACCTCTCTTCCTAAAAATCAGA 57.809 37.037 0.00 0.00 0.00 3.27
2724 3549 5.725362 ACCTCTCTTCCTAAAAATCAGACG 58.275 41.667 0.00 0.00 0.00 4.18
2725 3550 5.246429 ACCTCTCTTCCTAAAAATCAGACGT 59.754 40.000 0.00 0.00 0.00 4.34
2726 3551 6.166982 CCTCTCTTCCTAAAAATCAGACGTT 58.833 40.000 0.00 0.00 0.00 3.99
2727 3552 6.091441 CCTCTCTTCCTAAAAATCAGACGTTG 59.909 42.308 0.00 0.00 0.00 4.10
2728 3553 5.932303 TCTCTTCCTAAAAATCAGACGTTGG 59.068 40.000 0.00 0.00 0.00 3.77
2729 3554 5.001232 TCTTCCTAAAAATCAGACGTTGGG 58.999 41.667 0.00 0.00 0.00 4.12
2730 3555 3.681593 TCCTAAAAATCAGACGTTGGGG 58.318 45.455 0.00 0.00 0.00 4.96
2731 3556 2.163613 CCTAAAAATCAGACGTTGGGGC 59.836 50.000 0.00 0.00 0.00 5.80
2732 3557 1.698506 AAAAATCAGACGTTGGGGCA 58.301 45.000 0.00 0.00 0.00 5.36
2734 3559 0.110486 AAATCAGACGTTGGGGCAGT 59.890 50.000 0.00 0.00 0.00 4.40
2736 3561 0.110486 ATCAGACGTTGGGGCAGTTT 59.890 50.000 0.00 0.00 0.00 2.66
2737 3562 0.759959 TCAGACGTTGGGGCAGTTTA 59.240 50.000 0.00 0.00 0.00 2.01
2740 3565 2.556622 CAGACGTTGGGGCAGTTTAATT 59.443 45.455 0.00 0.00 0.00 1.40
2745 3570 5.291178 ACGTTGGGGCAGTTTAATTTAAAC 58.709 37.500 19.74 19.74 46.36 2.01
2757 3582 7.359262 GTTTAATTTAAACTGCCCCAACATC 57.641 36.000 19.96 0.00 43.50 3.06
2760 3585 6.926630 AATTTAAACTGCCCCAACATCTTA 57.073 33.333 0.00 0.00 0.00 2.10
2763 3612 8.782137 ATTTAAACTGCCCCAACATCTTATAT 57.218 30.769 0.00 0.00 0.00 0.86
2766 3615 9.702253 TTAAACTGCCCCAACATCTTATATTTA 57.298 29.630 0.00 0.00 0.00 1.40
2767 3616 7.823745 AACTGCCCCAACATCTTATATTTAG 57.176 36.000 0.00 0.00 0.00 1.85
2771 3620 7.534852 TGCCCCAACATCTTATATTTAGGAAT 58.465 34.615 0.00 0.00 0.00 3.01
2777 3626 9.799106 CAACATCTTATATTTAGGAATGGAGGT 57.201 33.333 0.00 0.00 0.00 3.85
2812 3661 9.983024 TTGGTTTTATGTTATCCCTGATTTAGA 57.017 29.630 0.00 0.00 0.00 2.10
2826 3675 4.163552 TGATTTAGATCGTCGTGTGTGTC 58.836 43.478 0.00 0.00 34.91 3.67
2857 3706 3.797039 TGCTGTGTGCTATACATCTTCC 58.203 45.455 0.00 0.00 42.24 3.46
3053 3962 1.816835 ACTGCTGAAGTGCCATGAATG 59.183 47.619 0.00 0.00 37.88 2.67
3054 3963 2.089201 CTGCTGAAGTGCCATGAATGA 58.911 47.619 0.00 0.00 0.00 2.57
3055 3964 2.688446 CTGCTGAAGTGCCATGAATGAT 59.312 45.455 0.00 0.00 0.00 2.45
3056 3965 2.686405 TGCTGAAGTGCCATGAATGATC 59.314 45.455 0.00 0.00 0.00 2.92
3057 3966 2.686405 GCTGAAGTGCCATGAATGATCA 59.314 45.455 0.00 0.00 40.57 2.92
3058 3967 3.243101 GCTGAAGTGCCATGAATGATCAG 60.243 47.826 0.09 3.96 39.39 2.90
3059 3968 3.945921 CTGAAGTGCCATGAATGATCAGT 59.054 43.478 0.09 0.00 39.39 3.41
3060 3969 4.338012 TGAAGTGCCATGAATGATCAGTT 58.662 39.130 0.09 0.00 39.39 3.16
3061 3970 4.157105 TGAAGTGCCATGAATGATCAGTTG 59.843 41.667 0.09 0.00 39.39 3.16
3062 3971 3.959293 AGTGCCATGAATGATCAGTTGA 58.041 40.909 0.09 0.00 39.39 3.18
3063 3972 4.338012 AGTGCCATGAATGATCAGTTGAA 58.662 39.130 0.09 0.00 39.39 2.69
3064 3973 4.954202 AGTGCCATGAATGATCAGTTGAAT 59.046 37.500 0.09 0.00 39.39 2.57
3095 4004 2.352127 GCCTGTTTAAGCTTGCCAGAAG 60.352 50.000 9.86 2.20 0.00 2.85
3211 4120 7.169813 GCTCGAGACATGATTGTAATATGACAA 59.830 37.037 18.75 8.13 43.23 3.18
3231 4140 2.514803 ACTTAGCGCTTTTGGTTGGAT 58.485 42.857 18.68 0.00 0.00 3.41
3235 4144 0.388520 GCGCTTTTGGTTGGATGGAC 60.389 55.000 0.00 0.00 0.00 4.02
3304 4213 1.351076 TCACCTGCTGATCTTGGTCA 58.649 50.000 0.00 0.00 0.00 4.02
3337 4246 2.807967 TGTGCTGCTTGTTATGTCAGAC 59.192 45.455 0.00 0.00 0.00 3.51
3338 4247 2.807967 GTGCTGCTTGTTATGTCAGACA 59.192 45.455 5.50 5.50 0.00 3.41
3362 4396 5.947228 TTGATCGGGCAATGATATCTTTC 57.053 39.130 3.98 0.00 0.00 2.62
3365 4399 5.471116 TGATCGGGCAATGATATCTTTCTTG 59.529 40.000 3.98 4.33 0.00 3.02
3399 4433 8.204836 GGAATGTTGGATGTATACACTTCTAGT 58.795 37.037 7.96 0.00 0.00 2.57
3403 4437 7.614192 TGTTGGATGTATACACTTCTAGTCTGA 59.386 37.037 7.96 0.00 0.00 3.27
3458 4493 3.069872 TGTGCCAAATGAATTTCTGCAGT 59.930 39.130 14.67 0.00 36.11 4.40
3461 4496 4.060205 GCCAAATGAATTTCTGCAGTGTT 58.940 39.130 14.67 7.14 0.00 3.32
3463 4498 5.051816 CCAAATGAATTTCTGCAGTGTTGT 58.948 37.500 14.67 0.00 0.00 3.32
3467 4502 4.422840 TGAATTTCTGCAGTGTTGTGTTG 58.577 39.130 14.67 0.00 0.00 3.33
3480 4515 0.030504 TGTGTTGCAGCGTTGATTGG 59.969 50.000 2.38 0.00 0.00 3.16
3536 4722 4.326548 GGTTATCAGTCAAGTTCGTGCTAC 59.673 45.833 0.00 0.00 0.00 3.58
3546 4732 5.585445 TCAAGTTCGTGCTACCTTAAAAACA 59.415 36.000 0.00 0.00 0.00 2.83
3594 4780 7.721399 CCATATAAGAATGCAAACTACTCCCTT 59.279 37.037 0.00 0.00 0.00 3.95
3595 4781 8.562892 CATATAAGAATGCAAACTACTCCCTTG 58.437 37.037 0.00 0.00 0.00 3.61
3629 4835 8.578308 TCAAATTTGAAATACAGCAAGACAAG 57.422 30.769 18.45 0.00 33.55 3.16
3630 4836 8.196771 TCAAATTTGAAATACAGCAAGACAAGT 58.803 29.630 18.45 0.00 33.55 3.16
3631 4837 9.462174 CAAATTTGAAATACAGCAAGACAAGTA 57.538 29.630 13.08 0.00 0.00 2.24
3660 4866 6.002704 GGAACGGAGAGAGTAATATGGTAGA 58.997 44.000 0.00 0.00 0.00 2.59
3674 4880 8.989980 GTAATATGGTAGATTTACTCTTGTGGC 58.010 37.037 0.00 0.00 35.28 5.01
3675 4881 4.216411 TGGTAGATTTACTCTTGTGGCC 57.784 45.455 0.00 0.00 35.28 5.36
3685 4891 2.301870 ACTCTTGTGGCCGAACTAATCA 59.698 45.455 0.00 0.00 0.00 2.57
3762 4968 1.071987 CTGCTGGACTGTTCTGGCA 59.928 57.895 7.01 7.01 0.00 4.92
3768 4974 1.425066 TGGACTGTTCTGGCAGGAATT 59.575 47.619 15.73 0.00 40.59 2.17
3773 4979 4.074970 ACTGTTCTGGCAGGAATTAACAG 58.925 43.478 29.58 29.58 45.76 3.16
3776 4982 2.715046 TCTGGCAGGAATTAACAGCAG 58.285 47.619 15.73 0.00 0.00 4.24
3778 4984 2.821969 CTGGCAGGAATTAACAGCAGTT 59.178 45.455 6.61 0.00 41.74 3.16
3779 4985 2.557924 TGGCAGGAATTAACAGCAGTTG 59.442 45.455 4.52 0.00 38.69 3.16
3780 4986 2.599659 GCAGGAATTAACAGCAGTTGC 58.400 47.619 4.52 0.00 38.69 4.17
3790 4996 2.048877 GCAGTTGCGCCATTTGCT 60.049 55.556 4.18 0.00 38.05 3.91
3791 4997 2.377310 GCAGTTGCGCCATTTGCTG 61.377 57.895 4.18 5.32 38.05 4.41
3792 4998 2.048877 AGTTGCGCCATTTGCTGC 60.049 55.556 4.18 0.00 39.09 5.25
3794 5000 2.048970 TTGCGCCATTTGCTGCTG 60.049 55.556 4.18 0.00 39.28 4.41
3795 5001 2.858862 TTGCGCCATTTGCTGCTGT 61.859 52.632 4.18 0.00 39.28 4.40
3796 5002 2.048877 GCGCCATTTGCTGCTGTT 60.049 55.556 0.00 0.00 38.05 3.16
3797 5003 2.090524 GCGCCATTTGCTGCTGTTC 61.091 57.895 0.00 0.00 38.05 3.18
3798 5004 1.798725 CGCCATTTGCTGCTGTTCG 60.799 57.895 0.00 0.00 38.05 3.95
3799 5005 1.286880 GCCATTTGCTGCTGTTCGT 59.713 52.632 0.00 0.00 36.87 3.85
3800 5006 0.318955 GCCATTTGCTGCTGTTCGTT 60.319 50.000 0.00 0.00 36.87 3.85
3801 5007 1.068610 GCCATTTGCTGCTGTTCGTTA 60.069 47.619 0.00 0.00 36.87 3.18
3803 5009 3.181501 GCCATTTGCTGCTGTTCGTTATA 60.182 43.478 0.00 0.00 36.87 0.98
3817 5055 8.600625 GCTGTTCGTTATATCTTTGTTGTGATA 58.399 33.333 0.00 0.00 0.00 2.15
3832 5070 6.007076 TGTTGTGATATGTTTGGTGTATGGT 58.993 36.000 0.00 0.00 0.00 3.55
3836 5074 6.491745 TGTGATATGTTTGGTGTATGGTTTGT 59.508 34.615 0.00 0.00 0.00 2.83
3853 5091 3.135457 TGCTGCATGGATGTGCCG 61.135 61.111 0.00 0.00 44.43 5.69
3860 5098 1.750193 CATGGATGTGCCGTACCTTT 58.250 50.000 0.00 0.00 40.66 3.11
3877 5115 8.026607 CCGTACCTTTAATCAAATCACAATGTT 58.973 33.333 0.00 0.00 0.00 2.71
3878 5116 9.405587 CGTACCTTTAATCAAATCACAATGTTT 57.594 29.630 0.00 0.00 0.00 2.83
3892 5130 9.533253 AATCACAATGTTTTTCTTTAGGAAGTG 57.467 29.630 0.00 0.00 35.16 3.16
3957 5358 7.410174 TGAATAAACCATGTTAGATTCTGGGT 58.590 34.615 0.00 0.00 32.89 4.51
3979 5380 2.027192 TCTGCATCTCCAACCCTACAAC 60.027 50.000 0.00 0.00 0.00 3.32
3982 5383 2.359900 CATCTCCAACCCTACAACAGC 58.640 52.381 0.00 0.00 0.00 4.40
3986 5387 0.400213 CCAACCCTACAACAGCCTCA 59.600 55.000 0.00 0.00 0.00 3.86
3998 5399 0.892358 CAGCCTCACTGGTGCATGTT 60.892 55.000 0.00 0.00 43.19 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.474570 GACGCCTCCCTGAGCCAT 61.475 66.667 0.00 0.00 0.00 4.40
63 64 2.086869 GGTGCTGCTGAGCTCAAATTA 58.913 47.619 18.85 3.43 46.39 1.40
68 69 2.346365 CTGGTGCTGCTGAGCTCA 59.654 61.111 17.19 17.19 46.39 4.26
81 82 3.250762 CGACATTGATTTGTGTCACTGGT 59.749 43.478 4.27 0.00 43.74 4.00
84 85 3.250762 CACCGACATTGATTTGTGTCACT 59.749 43.478 4.27 0.00 43.74 3.41
118 119 3.545124 TTCGCCACCATCGCCACTT 62.545 57.895 0.00 0.00 0.00 3.16
122 123 0.307760 CTATTTTCGCCACCATCGCC 59.692 55.000 0.00 0.00 0.00 5.54
256 257 1.683917 AGAGCAAGTCTCACGACAACT 59.316 47.619 0.00 0.00 44.35 3.16
272 273 4.693095 CCTCACTTTTTCTCCAACTAGAGC 59.307 45.833 0.00 0.00 33.66 4.09
346 348 4.293494 TCTTCTAGCAGATCCTCCACATT 58.707 43.478 0.00 0.00 0.00 2.71
351 353 2.037121 GGCTTCTTCTAGCAGATCCTCC 59.963 54.545 0.00 0.00 43.02 4.30
438 441 8.380743 AGCTTCATCAAATCAGATATCACTTC 57.619 34.615 5.32 0.00 0.00 3.01
486 489 0.810648 TGATGCGTGGAATGGAAAGC 59.189 50.000 0.00 0.00 0.00 3.51
487 490 2.733227 GCTTGATGCGTGGAATGGAAAG 60.733 50.000 0.00 0.00 0.00 2.62
491 494 0.179156 GTGCTTGATGCGTGGAATGG 60.179 55.000 0.00 0.00 46.63 3.16
492 495 0.179156 GGTGCTTGATGCGTGGAATG 60.179 55.000 0.00 0.00 46.63 2.67
493 496 1.647545 CGGTGCTTGATGCGTGGAAT 61.648 55.000 0.00 0.00 46.63 3.01
534 542 2.752903 ACAAACCAATCGAATGGGTAGC 59.247 45.455 23.17 0.00 40.33 3.58
577 585 2.106511 TCTCTTTGACCAAGGTTGAGGG 59.893 50.000 0.00 0.00 32.64 4.30
674 687 2.024176 AATTGCTCGCCGTCACTAAT 57.976 45.000 0.00 0.00 0.00 1.73
745 766 3.304586 CGCCAATCGCAAATTTCGA 57.695 47.368 12.77 12.77 40.45 3.71
861 893 4.779733 GGCGGTGGGGAGAGGAGA 62.780 72.222 0.00 0.00 0.00 3.71
882 915 0.390998 GCACTCTGAACTCTGGAGGC 60.391 60.000 2.58 0.00 0.00 4.70
885 918 1.615883 GTCTGCACTCTGAACTCTGGA 59.384 52.381 0.00 0.00 0.00 3.86
886 919 1.337635 GGTCTGCACTCTGAACTCTGG 60.338 57.143 0.00 0.00 0.00 3.86
887 920 1.342496 TGGTCTGCACTCTGAACTCTG 59.658 52.381 0.00 0.00 0.00 3.35
928 961 2.185608 GCTCTCCGGACTGAAGGC 59.814 66.667 0.00 0.00 0.00 4.35
1188 1243 2.362369 ACACCCCAGAGCGGATCAG 61.362 63.158 0.00 0.00 36.56 2.90
1201 1256 1.396996 CGATCGATCCAAAACACACCC 59.603 52.381 19.51 0.00 0.00 4.61
1464 1520 2.524306 TCCAGGTATGCCAACAAAAGG 58.476 47.619 1.54 0.00 37.19 3.11
1475 1531 1.134699 ACTGTCGCACATCCAGGTATG 60.135 52.381 0.00 0.00 0.00 2.39
1511 2306 3.480470 ACTATCACACAAAGCAGCAACT 58.520 40.909 0.00 0.00 0.00 3.16
1512 2307 3.665323 CGACTATCACACAAAGCAGCAAC 60.665 47.826 0.00 0.00 0.00 4.17
1528 2323 5.696724 GCAAATCATAGCCTTGTACGACTAT 59.303 40.000 0.00 0.00 0.00 2.12
1584 2383 5.388682 CCACACAAAGCAGCAATTTTTATCG 60.389 40.000 0.00 0.00 0.00 2.92
1604 2403 5.812286 TCTATGACTAGTGACTACACCACA 58.188 41.667 0.00 0.00 46.99 4.17
1605 2404 6.183360 CCTTCTATGACTAGTGACTACACCAC 60.183 46.154 0.00 0.00 46.99 4.16
1614 2413 8.642432 CAAATCATACCCTTCTATGACTAGTGA 58.358 37.037 0.00 0.00 36.23 3.41
1632 2431 4.503123 CGGAGGGAGTACATGCAAATCATA 60.503 45.833 0.00 0.00 33.19 2.15
1636 2435 1.559682 ACGGAGGGAGTACATGCAAAT 59.440 47.619 0.00 0.00 0.00 2.32
1646 2445 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
1647 2446 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1648 2447 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
1649 2448 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1650 2449 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
1651 2450 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
1653 2452 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
1654 2453 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
1655 2454 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
1656 2455 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
1657 2456 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
1658 2457 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
1660 2459 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1661 2460 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
1662 2461 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
1663 2462 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
1664 2463 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
1665 2464 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
1666 2465 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
1667 2466 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
1668 2467 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
1669 2468 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
1670 2469 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
1671 2470 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
1672 2471 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
1673 2472 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
1674 2473 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
1675 2474 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
1676 2475 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
1677 2476 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
1678 2477 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
1679 2478 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
1680 2479 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
1681 2480 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1682 2481 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1683 2482 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
1684 2483 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
1685 2484 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
1686 2485 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
1687 2486 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
1688 2487 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
1689 2488 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1690 2489 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1691 2490 6.897259 TTATTTTGCTCCGTATGTAGTCAC 57.103 37.500 0.00 0.00 0.00 3.67
1692 2491 7.766738 TCATTTATTTTGCTCCGTATGTAGTCA 59.233 33.333 0.00 0.00 0.00 3.41
1693 2492 8.138365 TCATTTATTTTGCTCCGTATGTAGTC 57.862 34.615 0.00 0.00 0.00 2.59
1694 2493 8.500753 TTCATTTATTTTGCTCCGTATGTAGT 57.499 30.769 0.00 0.00 0.00 2.73
1695 2494 9.599322 GATTCATTTATTTTGCTCCGTATGTAG 57.401 33.333 0.00 0.00 0.00 2.74
1696 2495 9.337396 AGATTCATTTATTTTGCTCCGTATGTA 57.663 29.630 0.00 0.00 0.00 2.29
1697 2496 8.225603 AGATTCATTTATTTTGCTCCGTATGT 57.774 30.769 0.00 0.00 0.00 2.29
1701 2500 9.561069 AGTATAGATTCATTTATTTTGCTCCGT 57.439 29.630 0.00 0.00 0.00 4.69
1743 2542 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
1744 2543 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
1746 2545 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
1747 2546 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
1748 2547 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
1749 2548 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
1775 2574 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
1776 2575 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1777 2576 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1778 2577 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1779 2578 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1780 2579 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1781 2580 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1782 2581 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1783 2582 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1784 2583 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1785 2584 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1786 2585 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
1787 2586 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1788 2587 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1789 2588 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1790 2589 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1791 2590 3.682718 CGTAGTACTCCCTCCGTTCCTAA 60.683 52.174 0.00 0.00 0.00 2.69
1792 2591 2.158900 CGTAGTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
1793 2592 1.407989 CGTAGTACTCCCTCCGTTCCT 60.408 57.143 0.00 0.00 0.00 3.36
1794 2593 1.020437 CGTAGTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 0.00 3.62
1795 2594 1.743996 ACGTAGTACTCCCTCCGTTC 58.256 55.000 0.00 0.00 41.94 3.95
1796 2595 3.350219 TTACGTAGTACTCCCTCCGTT 57.650 47.619 0.00 0.00 45.76 4.44
1797 2596 3.567478 ATTACGTAGTACTCCCTCCGT 57.433 47.619 0.00 4.30 45.76 4.69
1798 2597 4.096984 ACAAATTACGTAGTACTCCCTCCG 59.903 45.833 0.00 0.00 45.76 4.63
1799 2598 5.588958 ACAAATTACGTAGTACTCCCTCC 57.411 43.478 0.00 0.00 45.76 4.30
1800 2599 6.312180 CCAAACAAATTACGTAGTACTCCCTC 59.688 42.308 0.00 0.00 45.76 4.30
1801 2600 6.168389 CCAAACAAATTACGTAGTACTCCCT 58.832 40.000 0.00 0.00 45.76 4.20
1802 2601 5.352293 CCCAAACAAATTACGTAGTACTCCC 59.648 44.000 0.00 0.00 45.76 4.30
1803 2602 5.163824 GCCCAAACAAATTACGTAGTACTCC 60.164 44.000 0.00 0.00 45.76 3.85
1804 2603 5.163824 GGCCCAAACAAATTACGTAGTACTC 60.164 44.000 0.00 0.00 45.76 2.59
1805 2604 4.696877 GGCCCAAACAAATTACGTAGTACT 59.303 41.667 0.00 0.00 45.76 2.73
1806 2605 4.696877 AGGCCCAAACAAATTACGTAGTAC 59.303 41.667 0.00 0.00 45.76 2.73
1807 2606 4.909001 AGGCCCAAACAAATTACGTAGTA 58.091 39.130 0.00 0.00 45.11 1.82
1809 2608 4.022676 ACAAGGCCCAAACAAATTACGTAG 60.023 41.667 0.00 0.00 0.00 3.51
1810 2609 3.890147 ACAAGGCCCAAACAAATTACGTA 59.110 39.130 0.00 0.00 0.00 3.57
1811 2610 2.696187 ACAAGGCCCAAACAAATTACGT 59.304 40.909 0.00 0.00 0.00 3.57
1812 2611 3.056304 CACAAGGCCCAAACAAATTACG 58.944 45.455 0.00 0.00 0.00 3.18
1813 2612 2.805671 GCACAAGGCCCAAACAAATTAC 59.194 45.455 0.00 0.00 36.11 1.89
1830 2629 9.696917 CAATTCAGATATACTACATACAGCACA 57.303 33.333 0.00 0.00 0.00 4.57
1831 2630 9.698309 ACAATTCAGATATACTACATACAGCAC 57.302 33.333 0.00 0.00 0.00 4.40
1841 2640 8.544622 TGACCCACAAACAATTCAGATATACTA 58.455 33.333 0.00 0.00 0.00 1.82
1943 2750 4.722526 TCTGGATTGAAGGGACTGAAAA 57.277 40.909 0.00 0.00 40.86 2.29
1944 2751 4.592942 CATCTGGATTGAAGGGACTGAAA 58.407 43.478 0.00 0.00 40.86 2.69
2052 2859 6.867816 GGACAATTAACAATGCAGAAATCACA 59.132 34.615 0.00 0.00 0.00 3.58
2065 2872 6.814644 CGTAGGAGTACATGGACAATTAACAA 59.185 38.462 11.55 0.00 0.00 2.83
2168 2975 8.052748 TGTGACTGGCCTAATCAACTATAATTT 58.947 33.333 3.32 0.00 0.00 1.82
2172 2979 6.156256 AGTTGTGACTGGCCTAATCAACTATA 59.844 38.462 22.09 0.00 40.98 1.31
2179 2987 3.003480 GTGAGTTGTGACTGGCCTAATC 58.997 50.000 3.32 0.00 35.88 1.75
2197 3005 7.781170 GCATGGGCTTTTTCACGTATTGTGA 62.781 44.000 0.00 0.00 46.05 3.58
2198 3006 5.664004 GCATGGGCTTTTTCACGTATTGTG 61.664 45.833 0.00 0.00 42.98 3.33
2199 3007 3.613910 GCATGGGCTTTTTCACGTATTGT 60.614 43.478 0.00 0.00 36.96 2.71
2200 3008 2.923020 GCATGGGCTTTTTCACGTATTG 59.077 45.455 0.00 0.00 36.96 1.90
2201 3009 3.230743 GCATGGGCTTTTTCACGTATT 57.769 42.857 0.00 0.00 36.96 1.89
2202 3010 2.939460 GCATGGGCTTTTTCACGTAT 57.061 45.000 0.00 0.00 36.96 3.06
2214 3022 5.424121 CAGTTTATACTGTAAGCATGGGC 57.576 43.478 5.25 0.00 45.46 5.36
2313 3123 7.259161 CACTTCAGGTACCAGATAGAAGTAAC 58.741 42.308 23.75 0.00 42.49 2.50
2319 3129 3.982516 AGCACTTCAGGTACCAGATAGA 58.017 45.455 15.94 0.74 0.00 1.98
2363 3173 7.630082 ACTTATCCTGTAAGCAAAGGTATGAA 58.370 34.615 0.00 0.00 34.94 2.57
2389 3199 6.491403 AGAAGCACAAATATTTCCTGTGAACT 59.509 34.615 18.62 11.99 42.48 3.01
2393 3203 4.860907 GCAGAAGCACAAATATTTCCTGTG 59.139 41.667 12.48 12.48 42.70 3.66
2413 3223 4.083271 GGTGAAAAAGGTTAGCTACAGCAG 60.083 45.833 3.70 0.00 45.16 4.24
2416 3226 6.575162 AATGGTGAAAAAGGTTAGCTACAG 57.425 37.500 0.00 0.00 0.00 2.74
2548 3358 8.352942 CCCTAGATATGGAGTAAAACAATTTGC 58.647 37.037 0.00 0.00 0.00 3.68
2629 3447 6.894654 TGGTTATATTTGGCCATCTTTCTTCA 59.105 34.615 6.09 0.00 0.00 3.02
2648 3466 7.250032 TCTAATGCTAGCTCATCATGGTTAT 57.750 36.000 17.23 0.00 0.00 1.89
2650 3468 5.557576 TCTAATGCTAGCTCATCATGGTT 57.442 39.130 17.23 0.19 0.00 3.67
2701 3526 5.246429 ACGTCTGATTTTTAGGAAGAGAGGT 59.754 40.000 0.00 0.00 0.00 3.85
2706 3531 5.001232 CCCAACGTCTGATTTTTAGGAAGA 58.999 41.667 0.00 0.00 0.00 2.87
2707 3532 4.156008 CCCCAACGTCTGATTTTTAGGAAG 59.844 45.833 0.00 0.00 0.00 3.46
2711 3536 2.817258 TGCCCCAACGTCTGATTTTTAG 59.183 45.455 0.00 0.00 0.00 1.85
2712 3537 2.817258 CTGCCCCAACGTCTGATTTTTA 59.183 45.455 0.00 0.00 0.00 1.52
2715 3540 0.110486 ACTGCCCCAACGTCTGATTT 59.890 50.000 0.00 0.00 0.00 2.17
2716 3541 0.110486 AACTGCCCCAACGTCTGATT 59.890 50.000 0.00 0.00 0.00 2.57
2718 3543 0.759959 TAAACTGCCCCAACGTCTGA 59.240 50.000 0.00 0.00 0.00 3.27
2719 3544 1.600023 TTAAACTGCCCCAACGTCTG 58.400 50.000 0.00 0.00 0.00 3.51
2720 3545 2.579410 ATTAAACTGCCCCAACGTCT 57.421 45.000 0.00 0.00 0.00 4.18
2722 3547 5.291178 GTTTAAATTAAACTGCCCCAACGT 58.709 37.500 18.36 0.00 43.50 3.99
2734 3559 7.309770 AGATGTTGGGGCAGTTTAAATTAAA 57.690 32.000 0.00 0.00 0.00 1.52
2736 3561 6.926630 AAGATGTTGGGGCAGTTTAAATTA 57.073 33.333 0.00 0.00 0.00 1.40
2737 3562 5.823861 AAGATGTTGGGGCAGTTTAAATT 57.176 34.783 0.00 0.00 0.00 1.82
2740 3565 8.602472 AAATATAAGATGTTGGGGCAGTTTAA 57.398 30.769 0.00 0.00 0.00 1.52
2745 3570 6.542821 TCCTAAATATAAGATGTTGGGGCAG 58.457 40.000 0.00 0.00 0.00 4.85
2746 3571 6.523035 TCCTAAATATAAGATGTTGGGGCA 57.477 37.500 0.00 0.00 0.00 5.36
2747 3572 7.093771 CCATTCCTAAATATAAGATGTTGGGGC 60.094 40.741 0.00 0.00 0.00 5.80
2748 3573 8.170061 TCCATTCCTAAATATAAGATGTTGGGG 58.830 37.037 0.00 0.00 0.00 4.96
2749 3574 9.236006 CTCCATTCCTAAATATAAGATGTTGGG 57.764 37.037 0.00 0.00 0.00 4.12
2750 3575 9.236006 CCTCCATTCCTAAATATAAGATGTTGG 57.764 37.037 0.00 0.00 0.00 3.77
2751 3576 9.799106 ACCTCCATTCCTAAATATAAGATGTTG 57.201 33.333 0.00 0.00 0.00 3.33
2763 3612 8.656806 CCAATATGTACTACCTCCATTCCTAAA 58.343 37.037 0.00 0.00 0.00 1.85
2766 3615 6.151049 ACCAATATGTACTACCTCCATTCCT 58.849 40.000 0.00 0.00 0.00 3.36
2767 3616 6.435292 ACCAATATGTACTACCTCCATTCC 57.565 41.667 0.00 0.00 0.00 3.01
2771 3620 8.774183 ACATAAAACCAATATGTACTACCTCCA 58.226 33.333 0.00 0.00 41.07 3.86
2786 3635 9.983024 TCTAAATCAGGGATAACATAAAACCAA 57.017 29.630 0.00 0.00 0.00 3.67
2812 3661 0.659417 GACACGACACACACGACGAT 60.659 55.000 0.00 0.00 34.70 3.73
2814 3663 2.623427 CGACACGACACACACGACG 61.623 63.158 0.00 0.00 34.70 5.12
2826 3675 1.876453 GCACACAGCAGTACGACACG 61.876 60.000 0.00 0.00 44.79 4.49
2857 3706 6.125029 AGAAATATCTCCCAAGTGAACATGG 58.875 40.000 0.00 0.00 34.68 3.66
2906 3803 5.453567 AAGAACAATGTAGGAACAAAGCC 57.546 39.130 0.00 0.00 39.58 4.35
3053 3962 2.606725 CAGTCAGCCGATTCAACTGATC 59.393 50.000 8.41 0.00 42.08 2.92
3054 3963 2.625737 CAGTCAGCCGATTCAACTGAT 58.374 47.619 8.41 0.00 42.08 2.90
3055 3964 1.941209 GCAGTCAGCCGATTCAACTGA 60.941 52.381 5.07 2.36 39.72 3.41
3056 3965 0.445436 GCAGTCAGCCGATTCAACTG 59.555 55.000 0.00 0.00 40.19 3.16
3057 3966 2.846371 GCAGTCAGCCGATTCAACT 58.154 52.632 0.00 0.00 37.23 3.16
3211 4120 1.975660 TCCAACCAAAAGCGCTAAGT 58.024 45.000 12.05 2.55 0.00 2.24
3304 4213 1.959085 CAGCACAAAGGGCACGAAT 59.041 52.632 0.00 0.00 0.00 3.34
3337 4246 5.892160 AGATATCATTGCCCGATCAATTG 57.108 39.130 5.32 0.00 34.68 2.32
3338 4247 6.718454 AGAAAGATATCATTGCCCGATCAATT 59.282 34.615 5.32 0.00 34.68 2.32
3362 4396 3.334691 TCCAACATTCCTACTTCGCAAG 58.665 45.455 0.00 0.00 0.00 4.01
3365 4399 3.270877 ACATCCAACATTCCTACTTCGC 58.729 45.455 0.00 0.00 0.00 4.70
3399 4433 9.905713 AAAATAGCCAATGAGTAACTAATCAGA 57.094 29.630 0.00 0.00 33.52 3.27
3439 4474 3.656559 ACACTGCAGAAATTCATTTGGC 58.343 40.909 23.35 0.00 0.00 4.52
3458 4493 0.737804 ATCAACGCTGCAACACAACA 59.262 45.000 0.00 0.00 0.00 3.33
3461 4496 0.030504 CCAATCAACGCTGCAACACA 59.969 50.000 0.00 0.00 0.00 3.72
3463 4498 0.743688 AACCAATCAACGCTGCAACA 59.256 45.000 0.00 0.00 0.00 3.33
3467 4502 1.130955 CACAAACCAATCAACGCTGC 58.869 50.000 0.00 0.00 0.00 5.25
3480 4515 1.122849 CATTGCACGCAGACACAAAC 58.877 50.000 0.00 0.00 0.00 2.93
3536 4722 9.052759 AGATGTACAACTACACTGTTTTTAAGG 57.947 33.333 3.45 0.00 35.63 2.69
3546 4732 5.221641 TGGCTCAAAGATGTACAACTACACT 60.222 40.000 6.02 0.00 35.63 3.55
3620 4826 3.424433 CCGTTCCGAAATACTTGTCTTGC 60.424 47.826 0.00 0.00 0.00 4.01
3629 4835 3.779271 ACTCTCTCCGTTCCGAAATAC 57.221 47.619 0.00 0.00 0.00 1.89
3630 4836 7.309012 CCATATTACTCTCTCCGTTCCGAAATA 60.309 40.741 0.00 0.00 0.00 1.40
3631 4837 6.448006 CATATTACTCTCTCCGTTCCGAAAT 58.552 40.000 0.00 0.00 0.00 2.17
3635 4841 3.568853 ACCATATTACTCTCTCCGTTCCG 59.431 47.826 0.00 0.00 0.00 4.30
3660 4866 3.418684 AGTTCGGCCACAAGAGTAAAT 57.581 42.857 2.24 0.00 0.00 1.40
3667 4873 2.420022 CCTTGATTAGTTCGGCCACAAG 59.580 50.000 2.24 0.00 34.85 3.16
3668 4874 2.432444 CCTTGATTAGTTCGGCCACAA 58.568 47.619 2.24 0.00 0.00 3.33
3669 4875 1.339631 CCCTTGATTAGTTCGGCCACA 60.340 52.381 2.24 0.00 0.00 4.17
3670 4876 1.379527 CCCTTGATTAGTTCGGCCAC 58.620 55.000 2.24 0.00 0.00 5.01
3671 4877 0.254747 CCCCTTGATTAGTTCGGCCA 59.745 55.000 2.24 0.00 0.00 5.36
3672 4878 1.101635 GCCCCTTGATTAGTTCGGCC 61.102 60.000 0.00 0.00 0.00 6.13
3673 4879 1.101635 GGCCCCTTGATTAGTTCGGC 61.102 60.000 0.00 0.00 0.00 5.54
3674 4880 0.546598 AGGCCCCTTGATTAGTTCGG 59.453 55.000 0.00 0.00 0.00 4.30
3675 4881 2.420058 AAGGCCCCTTGATTAGTTCG 57.580 50.000 0.00 0.00 34.60 3.95
3685 4891 3.099141 CAACATACATCAAAGGCCCCTT 58.901 45.455 0.00 0.00 37.98 3.95
3735 4941 2.267324 GTCCAGCAGTCTCCAGCC 59.733 66.667 0.00 0.00 0.00 4.85
3762 4968 1.200020 GCGCAACTGCTGTTAATTCCT 59.800 47.619 8.79 0.00 39.32 3.36
3768 4974 0.958091 AAATGGCGCAACTGCTGTTA 59.042 45.000 10.83 0.00 39.32 2.41
3781 4987 0.318955 AACGAACAGCAGCAAATGGC 60.319 50.000 0.00 0.00 45.30 4.40
3782 4988 2.987413 TAACGAACAGCAGCAAATGG 57.013 45.000 0.00 0.00 0.00 3.16
3784 4990 6.683974 AAGATATAACGAACAGCAGCAAAT 57.316 33.333 0.00 0.00 0.00 2.32
3786 4992 5.411361 ACAAAGATATAACGAACAGCAGCAA 59.589 36.000 0.00 0.00 0.00 3.91
3787 4993 4.935205 ACAAAGATATAACGAACAGCAGCA 59.065 37.500 0.00 0.00 0.00 4.41
3788 4994 5.470845 ACAAAGATATAACGAACAGCAGC 57.529 39.130 0.00 0.00 0.00 5.25
3789 4995 6.738200 CACAACAAAGATATAACGAACAGCAG 59.262 38.462 0.00 0.00 0.00 4.24
3790 4996 6.425417 TCACAACAAAGATATAACGAACAGCA 59.575 34.615 0.00 0.00 0.00 4.41
3791 4997 6.827641 TCACAACAAAGATATAACGAACAGC 58.172 36.000 0.00 0.00 0.00 4.40
3801 5007 9.023962 ACACCAAACATATCACAACAAAGATAT 57.976 29.630 0.00 0.00 37.81 1.63
3803 5009 7.288810 ACACCAAACATATCACAACAAAGAT 57.711 32.000 0.00 0.00 0.00 2.40
3817 5055 3.640967 AGCACAAACCATACACCAAACAT 59.359 39.130 0.00 0.00 0.00 2.71
3832 5070 0.038067 GCACATCCATGCAGCACAAA 60.038 50.000 0.00 0.00 45.39 2.83
3878 5116 9.231297 CCAAATCACTATCACTTCCTAAAGAAA 57.769 33.333 0.00 0.00 36.30 2.52
3892 5130 8.514594 TCAAAGAATCACAACCAAATCACTATC 58.485 33.333 0.00 0.00 0.00 2.08
3896 5297 7.373493 AGATCAAAGAATCACAACCAAATCAC 58.627 34.615 0.00 0.00 0.00 3.06
3932 5333 7.410174 ACCCAGAATCTAACATGGTTTATTCA 58.590 34.615 15.97 0.00 0.00 2.57
3934 5335 8.116026 AGAACCCAGAATCTAACATGGTTTATT 58.884 33.333 0.00 0.00 34.91 1.40
3957 5358 2.265367 TGTAGGGTTGGAGATGCAGAA 58.735 47.619 0.00 0.00 0.00 3.02
3979 5380 0.892358 AACATGCACCAGTGAGGCTG 60.892 55.000 0.99 5.97 43.14 4.85
3982 5383 2.479566 ACTAACATGCACCAGTGAGG 57.520 50.000 0.99 0.00 45.67 3.86
3986 5387 5.852282 AAAAGAAACTAACATGCACCAGT 57.148 34.783 0.00 0.00 0.00 4.00
3990 5391 9.170584 GAGAAGTAAAAAGAAACTAACATGCAC 57.829 33.333 0.00 0.00 0.00 4.57
3998 5399 9.607988 TGACACATGAGAAGTAAAAAGAAACTA 57.392 29.630 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.