Multiple sequence alignment - TraesCS4A01G085200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G085200 chr4A 100.000 4914 0 0 1 4914 89903048 89898135 0.000000e+00 9075.0
1 TraesCS4A01G085200 chr4B 89.113 3619 236 59 585 4122 461190297 461193838 0.000000e+00 4355.0
2 TraesCS4A01G085200 chr4B 85.989 364 40 7 4386 4748 461194034 461194387 3.590000e-101 379.0
3 TraesCS4A01G085200 chr4B 84.239 184 13 9 5 172 461181738 461181921 1.090000e-36 165.0
4 TraesCS4A01G085200 chr4B 79.856 139 19 8 4773 4908 461194377 461194509 5.240000e-15 93.5
5 TraesCS4A01G085200 chr4D 87.939 2935 226 37 1299 4175 374608944 374611808 0.000000e+00 3341.0
6 TraesCS4A01G085200 chr4D 88.636 572 27 18 709 1271 374608407 374608949 0.000000e+00 662.0
7 TraesCS4A01G085200 chr4D 84.965 286 21 14 1 278 374607840 374608111 2.250000e-68 270.0
8 TraesCS4A01G085200 chr4D 91.549 142 12 0 4773 4914 374612484 374612625 3.880000e-46 196.0
9 TraesCS4A01G085200 chr4D 80.345 290 26 12 4462 4749 374612236 374612496 1.810000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G085200 chr4A 89898135 89903048 4913 True 9075.000000 9075 100.0000 1 4914 1 chr4A.!!$R1 4913
1 TraesCS4A01G085200 chr4B 461190297 461194509 4212 False 1609.166667 4355 84.9860 585 4908 3 chr4B.!!$F2 4323
2 TraesCS4A01G085200 chr4D 374607840 374612625 4785 False 932.000000 3341 86.6868 1 4914 5 chr4D.!!$F1 4913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
400 409 0.032540 CCCAACAAAGAACTGGCAGC 59.967 55.0 15.89 0.0 0.00 5.25 F
523 532 0.034863 TTGCTCCCCCGGTTTCATAC 60.035 55.0 0.00 0.0 0.00 2.39 F
1994 2174 0.033504 TCTTCACGAAGGTGCCTGAC 59.966 55.0 6.94 0.0 44.03 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1312 1469 0.752376 ACGCCTCTAGTGCCTCTACC 60.752 60.000 0.00 0.0 0.0 3.18 R
2286 2470 1.000396 ATGCCCTTGGGAAGCTGAC 60.000 57.895 10.36 0.0 0.0 3.51 R
3919 4152 0.111089 GAAACTGCTTGTCACTCGCG 60.111 55.000 0.00 0.0 0.0 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 50 3.417645 CGAGCGTGTGTTTTTCTAAAAGC 59.582 43.478 0.00 0.00 0.00 3.51
48 51 4.598062 GAGCGTGTGTTTTTCTAAAAGCT 58.402 39.130 4.11 1.51 31.44 3.74
49 52 5.557514 CGAGCGTGTGTTTTTCTAAAAGCTA 60.558 40.000 0.00 0.00 31.44 3.32
50 53 5.507974 AGCGTGTGTTTTTCTAAAAGCTAC 58.492 37.500 0.00 3.15 31.44 3.58
51 54 5.065474 AGCGTGTGTTTTTCTAAAAGCTACA 59.935 36.000 0.00 4.33 31.44 2.74
52 55 5.170803 GCGTGTGTTTTTCTAAAAGCTACAC 59.829 40.000 17.34 17.34 37.52 2.90
53 56 6.483687 CGTGTGTTTTTCTAAAAGCTACACT 58.516 36.000 20.75 0.00 37.72 3.55
55 58 7.581600 CGTGTGTTTTTCTAAAAGCTACACTAC 59.418 37.037 20.75 15.61 37.72 2.73
56 59 7.854422 GTGTGTTTTTCTAAAAGCTACACTACC 59.146 37.037 16.53 6.82 37.72 3.18
58 61 7.228108 GTGTTTTTCTAAAAGCTACACTACCCT 59.772 37.037 11.61 0.00 35.68 4.34
59 62 7.227910 TGTTTTTCTAAAAGCTACACTACCCTG 59.772 37.037 0.00 0.00 31.44 4.45
60 63 4.467198 TCTAAAAGCTACACTACCCTGC 57.533 45.455 0.00 0.00 0.00 4.85
61 64 2.491675 AAAAGCTACACTACCCTGCC 57.508 50.000 0.00 0.00 0.00 4.85
62 65 1.657804 AAAGCTACACTACCCTGCCT 58.342 50.000 0.00 0.00 0.00 4.75
63 66 2.544844 AAGCTACACTACCCTGCCTA 57.455 50.000 0.00 0.00 0.00 3.93
64 67 2.074729 AGCTACACTACCCTGCCTAG 57.925 55.000 0.00 0.00 0.00 3.02
65 68 1.288335 AGCTACACTACCCTGCCTAGT 59.712 52.381 0.00 0.00 0.00 2.57
66 69 1.409427 GCTACACTACCCTGCCTAGTG 59.591 57.143 4.40 4.40 44.59 2.74
67 70 2.032620 CTACACTACCCTGCCTAGTGG 58.967 57.143 9.72 0.00 43.73 4.00
68 71 0.116541 ACACTACCCTGCCTAGTGGT 59.883 55.000 9.72 0.00 43.73 4.16
69 72 1.360162 ACACTACCCTGCCTAGTGGTA 59.640 52.381 9.72 0.00 43.73 3.25
81 84 4.079038 TGCCTAGTGGTAGTAGGGTTGATA 60.079 45.833 10.79 0.00 40.81 2.15
82 85 4.523558 GCCTAGTGGTAGTAGGGTTGATAG 59.476 50.000 10.79 0.00 40.81 2.08
83 86 5.078256 CCTAGTGGTAGTAGGGTTGATAGG 58.922 50.000 2.39 0.00 37.58 2.57
85 88 5.420215 AGTGGTAGTAGGGTTGATAGGAT 57.580 43.478 0.00 0.00 0.00 3.24
87 90 4.283722 GTGGTAGTAGGGTTGATAGGATGG 59.716 50.000 0.00 0.00 0.00 3.51
88 91 3.838903 GGTAGTAGGGTTGATAGGATGGG 59.161 52.174 0.00 0.00 0.00 4.00
89 92 3.726837 AGTAGGGTTGATAGGATGGGT 57.273 47.619 0.00 0.00 0.00 4.51
91 94 0.846693 AGGGTTGATAGGATGGGTGC 59.153 55.000 0.00 0.00 0.00 5.01
92 95 0.178990 GGGTTGATAGGATGGGTGCC 60.179 60.000 0.00 0.00 0.00 5.01
93 96 0.178990 GGTTGATAGGATGGGTGCCC 60.179 60.000 0.00 0.00 0.00 5.36
115 118 4.264253 CAGTGGCCTAGTGAATTGAATCA 58.736 43.478 3.32 0.00 30.94 2.57
144 148 1.694150 TCCTCCACTTGACCACAGAAG 59.306 52.381 0.00 0.00 0.00 2.85
161 165 2.573462 AGAAGACAGCCAGCTCCAAATA 59.427 45.455 0.00 0.00 0.00 1.40
209 213 1.272092 TGCACCAGGGAAAAGATCAGG 60.272 52.381 0.00 0.00 0.00 3.86
252 261 3.893813 GGATGGGAAATTTGAGATGGAGG 59.106 47.826 0.00 0.00 0.00 4.30
258 267 4.082245 GGAAATTTGAGATGGAGGCGAAAA 60.082 41.667 0.00 0.00 0.00 2.29
259 268 5.394553 GGAAATTTGAGATGGAGGCGAAAAT 60.395 40.000 0.00 0.00 0.00 1.82
262 271 6.966534 ATTTGAGATGGAGGCGAAAATTAT 57.033 33.333 0.00 0.00 0.00 1.28
269 278 7.931275 AGATGGAGGCGAAAATTATAAGTTTC 58.069 34.615 22.42 22.42 39.02 2.78
273 282 7.392113 TGGAGGCGAAAATTATAAGTTTCAGAA 59.608 33.333 28.15 11.65 41.55 3.02
288 297 5.073428 GTTTCAGAAGAAATCTTGGGGACT 58.927 41.667 0.00 0.00 44.87 3.85
290 299 3.055819 TCAGAAGAAATCTTGGGGACTCG 60.056 47.826 0.00 0.00 35.73 4.18
291 300 3.055819 CAGAAGAAATCTTGGGGACTCGA 60.056 47.826 0.00 0.00 35.73 4.04
293 302 3.336138 AGAAATCTTGGGGACTCGAAC 57.664 47.619 0.00 0.00 0.00 3.95
294 303 2.637872 AGAAATCTTGGGGACTCGAACA 59.362 45.455 0.00 0.00 0.00 3.18
297 306 1.420430 TCTTGGGGACTCGAACAGTT 58.580 50.000 0.00 0.00 34.41 3.16
298 307 1.070134 TCTTGGGGACTCGAACAGTTG 59.930 52.381 0.00 0.00 34.41 3.16
303 312 0.033504 GGACTCGAACAGTTGGCTCA 59.966 55.000 0.00 0.00 34.41 4.26
312 321 4.853196 CGAACAGTTGGCTCAATTGTATTG 59.147 41.667 13.59 0.00 42.00 1.90
316 325 6.677913 ACAGTTGGCTCAATTGTATTGTTAC 58.322 36.000 12.21 0.00 41.27 2.50
317 326 5.794945 CAGTTGGCTCAATTGTATTGTTACG 59.205 40.000 5.13 0.00 0.00 3.18
320 329 4.393680 TGGCTCAATTGTATTGTTACGACC 59.606 41.667 5.13 0.00 0.00 4.79
321 330 4.634443 GGCTCAATTGTATTGTTACGACCT 59.366 41.667 5.13 0.00 0.00 3.85
322 331 5.447279 GGCTCAATTGTATTGTTACGACCTG 60.447 44.000 5.13 0.00 0.00 4.00
323 332 5.447279 GCTCAATTGTATTGTTACGACCTGG 60.447 44.000 5.13 0.00 0.00 4.45
324 333 4.938832 TCAATTGTATTGTTACGACCTGGG 59.061 41.667 5.13 0.00 0.00 4.45
326 335 1.065998 TGTATTGTTACGACCTGGGCC 60.066 52.381 0.00 0.00 0.00 5.80
327 336 0.176219 TATTGTTACGACCTGGGCCG 59.824 55.000 0.00 8.81 0.00 6.13
328 337 2.530958 ATTGTTACGACCTGGGCCGG 62.531 60.000 5.01 5.01 0.00 6.13
329 338 3.698820 GTTACGACCTGGGCCGGT 61.699 66.667 17.96 17.96 40.80 5.28
335 344 4.658786 ACCTGGGCCGGTCTTCCT 62.659 66.667 12.30 0.00 29.14 3.36
336 345 4.101448 CCTGGGCCGGTCTTCCTG 62.101 72.222 12.30 5.67 0.00 3.86
342 351 2.444256 GCCGGTCTTCCTGGGCTAT 61.444 63.158 1.90 0.00 37.30 2.97
346 355 1.341531 CGGTCTTCCTGGGCTATACAG 59.658 57.143 0.00 0.00 35.74 2.74
347 356 2.679082 GGTCTTCCTGGGCTATACAGA 58.321 52.381 0.00 0.00 38.20 3.41
348 357 2.365941 GGTCTTCCTGGGCTATACAGAC 59.634 54.545 0.00 0.00 38.20 3.51
349 358 3.031736 GTCTTCCTGGGCTATACAGACA 58.968 50.000 0.00 0.00 38.20 3.41
350 359 3.068873 GTCTTCCTGGGCTATACAGACAG 59.931 52.174 0.00 0.00 38.20 3.51
351 360 2.848678 TCCTGGGCTATACAGACAGT 57.151 50.000 0.00 0.00 38.20 3.55
352 361 3.116096 TCCTGGGCTATACAGACAGTT 57.884 47.619 0.00 0.00 38.20 3.16
353 362 3.031736 TCCTGGGCTATACAGACAGTTC 58.968 50.000 0.00 0.00 38.20 3.01
354 363 3.034635 CCTGGGCTATACAGACAGTTCT 58.965 50.000 0.00 0.00 38.20 3.01
363 372 2.447244 CAGACAGTTCTGGAGTCACC 57.553 55.000 4.82 0.00 45.06 4.02
364 373 1.688735 CAGACAGTTCTGGAGTCACCA 59.311 52.381 4.82 0.00 45.06 4.17
373 382 2.779755 TGGAGTCACCATGCGTATTT 57.220 45.000 0.00 0.00 44.64 1.40
374 383 3.066291 TGGAGTCACCATGCGTATTTT 57.934 42.857 0.00 0.00 44.64 1.82
375 384 3.417101 TGGAGTCACCATGCGTATTTTT 58.583 40.909 0.00 0.00 44.64 1.94
396 405 5.782893 TTTGTATCCCAACAAAGAACTGG 57.217 39.130 0.00 0.00 42.78 4.00
397 406 3.153919 TGTATCCCAACAAAGAACTGGC 58.846 45.455 0.00 0.00 0.00 4.85
398 407 2.380064 ATCCCAACAAAGAACTGGCA 57.620 45.000 0.00 0.00 0.00 4.92
399 408 1.691196 TCCCAACAAAGAACTGGCAG 58.309 50.000 14.16 14.16 0.00 4.85
400 409 0.032540 CCCAACAAAGAACTGGCAGC 59.967 55.000 15.89 0.00 0.00 5.25
401 410 0.032540 CCAACAAAGAACTGGCAGCC 59.967 55.000 15.89 3.66 0.00 4.85
402 411 0.318107 CAACAAAGAACTGGCAGCCG 60.318 55.000 15.89 4.22 0.00 5.52
403 412 0.751643 AACAAAGAACTGGCAGCCGT 60.752 50.000 15.89 4.94 0.00 5.68
404 413 0.751643 ACAAAGAACTGGCAGCCGTT 60.752 50.000 15.89 18.03 0.00 4.44
405 414 1.234821 CAAAGAACTGGCAGCCGTTA 58.765 50.000 15.89 0.00 0.00 3.18
406 415 1.606668 CAAAGAACTGGCAGCCGTTAA 59.393 47.619 15.89 0.00 0.00 2.01
407 416 1.975660 AAGAACTGGCAGCCGTTAAA 58.024 45.000 15.89 0.00 0.00 1.52
408 417 1.975660 AGAACTGGCAGCCGTTAAAA 58.024 45.000 15.89 0.00 0.00 1.52
409 418 2.303175 AGAACTGGCAGCCGTTAAAAA 58.697 42.857 15.89 0.00 0.00 1.94
435 444 8.910351 AATAGAGAACTGGCTATTTGTATTCC 57.090 34.615 0.00 0.00 34.55 3.01
436 445 6.567602 AGAGAACTGGCTATTTGTATTCCT 57.432 37.500 0.00 0.00 0.00 3.36
437 446 7.676683 AGAGAACTGGCTATTTGTATTCCTA 57.323 36.000 0.00 0.00 0.00 2.94
438 447 7.501844 AGAGAACTGGCTATTTGTATTCCTAC 58.498 38.462 0.00 0.00 0.00 3.18
439 448 7.125811 AGAGAACTGGCTATTTGTATTCCTACA 59.874 37.037 0.00 0.00 36.06 2.74
440 449 7.806180 AGAACTGGCTATTTGTATTCCTACAT 58.194 34.615 0.00 0.00 37.68 2.29
441 450 8.934697 AGAACTGGCTATTTGTATTCCTACATA 58.065 33.333 0.00 0.00 37.68 2.29
442 451 9.209175 GAACTGGCTATTTGTATTCCTACATAG 57.791 37.037 0.00 0.00 37.68 2.23
443 452 8.492415 ACTGGCTATTTGTATTCCTACATAGA 57.508 34.615 0.00 0.00 37.68 1.98
444 453 8.934697 ACTGGCTATTTGTATTCCTACATAGAA 58.065 33.333 0.00 0.00 37.68 2.10
445 454 9.209175 CTGGCTATTTGTATTCCTACATAGAAC 57.791 37.037 0.00 0.00 37.68 3.01
446 455 8.934697 TGGCTATTTGTATTCCTACATAGAACT 58.065 33.333 0.00 0.00 37.68 3.01
447 456 9.209175 GGCTATTTGTATTCCTACATAGAACTG 57.791 37.037 0.00 0.00 37.68 3.16
448 457 9.209175 GCTATTTGTATTCCTACATAGAACTGG 57.791 37.037 0.00 0.00 37.68 4.00
449 458 9.209175 CTATTTGTATTCCTACATAGAACTGGC 57.791 37.037 0.00 0.00 37.68 4.85
450 459 6.808321 TTGTATTCCTACATAGAACTGGCT 57.192 37.500 0.00 0.00 37.68 4.75
451 460 6.161855 TGTATTCCTACATAGAACTGGCTG 57.838 41.667 0.00 0.00 32.88 4.85
452 461 5.661312 TGTATTCCTACATAGAACTGGCTGT 59.339 40.000 0.00 0.00 32.88 4.40
453 462 5.700402 ATTCCTACATAGAACTGGCTGTT 57.300 39.130 9.68 9.68 42.38 3.16
454 463 5.499004 TTCCTACATAGAACTGGCTGTTT 57.501 39.130 11.21 4.59 39.30 2.83
455 464 5.086104 TCCTACATAGAACTGGCTGTTTC 57.914 43.478 11.21 5.17 39.30 2.78
456 465 4.777896 TCCTACATAGAACTGGCTGTTTCT 59.222 41.667 11.21 11.44 39.30 2.52
457 466 5.955959 TCCTACATAGAACTGGCTGTTTCTA 59.044 40.000 11.21 12.97 39.30 2.10
458 467 6.096987 TCCTACATAGAACTGGCTGTTTCTAG 59.903 42.308 11.21 5.44 39.30 2.43
459 468 4.508662 ACATAGAACTGGCTGTTTCTAGC 58.491 43.478 11.21 0.00 42.94 3.42
467 476 2.464157 GCTGTTTCTAGCCAGTCTGT 57.536 50.000 0.00 0.00 37.73 3.41
468 477 2.772287 GCTGTTTCTAGCCAGTCTGTT 58.228 47.619 0.00 0.00 37.73 3.16
469 478 2.481952 GCTGTTTCTAGCCAGTCTGTTG 59.518 50.000 0.00 0.00 37.73 3.33
470 479 3.733337 CTGTTTCTAGCCAGTCTGTTGT 58.267 45.455 0.00 0.00 0.00 3.32
471 480 3.466836 TGTTTCTAGCCAGTCTGTTGTG 58.533 45.455 0.00 0.00 0.00 3.33
472 481 3.133901 TGTTTCTAGCCAGTCTGTTGTGA 59.866 43.478 0.00 0.00 0.00 3.58
473 482 4.127171 GTTTCTAGCCAGTCTGTTGTGAA 58.873 43.478 0.00 0.00 0.00 3.18
474 483 4.623932 TTCTAGCCAGTCTGTTGTGAAT 57.376 40.909 0.00 0.00 0.00 2.57
475 484 5.738619 TTCTAGCCAGTCTGTTGTGAATA 57.261 39.130 0.00 0.00 0.00 1.75
476 485 5.738619 TCTAGCCAGTCTGTTGTGAATAA 57.261 39.130 0.00 0.00 0.00 1.40
477 486 6.299805 TCTAGCCAGTCTGTTGTGAATAAT 57.700 37.500 0.00 0.00 0.00 1.28
478 487 6.108687 TCTAGCCAGTCTGTTGTGAATAATG 58.891 40.000 0.00 0.00 0.00 1.90
479 488 4.655963 AGCCAGTCTGTTGTGAATAATGT 58.344 39.130 0.00 0.00 0.00 2.71
480 489 5.072741 AGCCAGTCTGTTGTGAATAATGTT 58.927 37.500 0.00 0.00 0.00 2.71
481 490 5.182001 AGCCAGTCTGTTGTGAATAATGTTC 59.818 40.000 0.00 0.00 0.00 3.18
482 491 5.048782 GCCAGTCTGTTGTGAATAATGTTCA 60.049 40.000 0.00 0.00 0.00 3.18
483 492 6.349611 GCCAGTCTGTTGTGAATAATGTTCAT 60.350 38.462 0.00 0.00 0.00 2.57
484 493 7.025365 CCAGTCTGTTGTGAATAATGTTCATG 58.975 38.462 0.00 0.00 0.00 3.07
485 494 7.308770 CCAGTCTGTTGTGAATAATGTTCATGT 60.309 37.037 0.00 0.00 0.00 3.21
486 495 8.077991 CAGTCTGTTGTGAATAATGTTCATGTT 58.922 33.333 0.00 0.00 0.00 2.71
487 496 8.632679 AGTCTGTTGTGAATAATGTTCATGTTT 58.367 29.630 0.00 0.00 0.00 2.83
488 497 9.248291 GTCTGTTGTGAATAATGTTCATGTTTT 57.752 29.630 0.00 0.00 0.00 2.43
489 498 9.814899 TCTGTTGTGAATAATGTTCATGTTTTT 57.185 25.926 0.00 0.00 0.00 1.94
510 519 4.335400 TTTGTTGAAAGGGATTTGCTCC 57.665 40.909 0.00 0.00 44.11 4.70
517 526 2.359011 GGATTTGCTCCCCCGGTT 59.641 61.111 0.00 0.00 38.19 4.44
518 527 1.304962 GGATTTGCTCCCCCGGTTT 60.305 57.895 0.00 0.00 38.19 3.27
519 528 1.320344 GGATTTGCTCCCCCGGTTTC 61.320 60.000 0.00 0.00 38.19 2.78
520 529 0.610785 GATTTGCTCCCCCGGTTTCA 60.611 55.000 0.00 0.00 0.00 2.69
521 530 0.041090 ATTTGCTCCCCCGGTTTCAT 59.959 50.000 0.00 0.00 0.00 2.57
522 531 0.699399 TTTGCTCCCCCGGTTTCATA 59.301 50.000 0.00 0.00 0.00 2.15
523 532 0.034863 TTGCTCCCCCGGTTTCATAC 60.035 55.000 0.00 0.00 0.00 2.39
524 533 1.202099 TGCTCCCCCGGTTTCATACA 61.202 55.000 0.00 0.00 0.00 2.29
525 534 0.182775 GCTCCCCCGGTTTCATACAT 59.817 55.000 0.00 0.00 0.00 2.29
526 535 1.418637 GCTCCCCCGGTTTCATACATA 59.581 52.381 0.00 0.00 0.00 2.29
527 536 2.550208 GCTCCCCCGGTTTCATACATAG 60.550 54.545 0.00 0.00 0.00 2.23
528 537 2.969950 CTCCCCCGGTTTCATACATAGA 59.030 50.000 0.00 0.00 0.00 1.98
529 538 3.386063 TCCCCCGGTTTCATACATAGAA 58.614 45.455 0.00 0.00 0.00 2.10
530 539 3.781407 TCCCCCGGTTTCATACATAGAAA 59.219 43.478 0.00 0.00 32.93 2.52
531 540 4.414182 TCCCCCGGTTTCATACATAGAAAT 59.586 41.667 0.00 0.00 37.33 2.17
532 541 4.760204 CCCCCGGTTTCATACATAGAAATC 59.240 45.833 0.00 0.00 37.33 2.17
533 542 5.373222 CCCCGGTTTCATACATAGAAATCA 58.627 41.667 0.00 0.00 36.19 2.57
534 543 5.825679 CCCCGGTTTCATACATAGAAATCAA 59.174 40.000 0.00 0.00 36.19 2.57
535 544 6.320164 CCCCGGTTTCATACATAGAAATCAAA 59.680 38.462 0.00 0.00 36.19 2.69
536 545 7.014230 CCCCGGTTTCATACATAGAAATCAAAT 59.986 37.037 0.00 0.00 36.19 2.32
537 546 7.862372 CCCGGTTTCATACATAGAAATCAAATG 59.138 37.037 0.00 0.00 36.19 2.32
538 547 8.405531 CCGGTTTCATACATAGAAATCAAATGT 58.594 33.333 0.00 6.64 36.19 2.71
539 548 9.225201 CGGTTTCATACATAGAAATCAAATGTG 57.775 33.333 10.11 0.00 36.19 3.21
540 549 9.023967 GGTTTCATACATAGAAATCAAATGTGC 57.976 33.333 10.11 0.00 36.39 4.57
541 550 9.571810 GTTTCATACATAGAAATCAAATGTGCA 57.428 29.630 10.11 0.00 37.33 4.57
548 557 9.357652 ACATAGAAATCAAATGTGCATTACAAC 57.642 29.630 0.00 0.00 43.77 3.32
549 558 6.932901 AGAAATCAAATGTGCATTACAACG 57.067 33.333 0.00 0.00 43.77 4.10
550 559 5.345741 AGAAATCAAATGTGCATTACAACGC 59.654 36.000 0.00 0.00 43.77 4.84
551 560 3.632855 TCAAATGTGCATTACAACGCA 57.367 38.095 0.00 0.00 43.77 5.24
552 561 3.969899 TCAAATGTGCATTACAACGCAA 58.030 36.364 0.00 0.00 43.77 4.85
553 562 4.363138 TCAAATGTGCATTACAACGCAAA 58.637 34.783 0.00 0.00 43.77 3.68
554 563 4.208047 TCAAATGTGCATTACAACGCAAAC 59.792 37.500 0.00 0.00 43.77 2.93
555 564 2.851805 TGTGCATTACAACGCAAACA 57.148 40.000 0.00 0.00 40.44 2.83
556 565 2.455032 TGTGCATTACAACGCAAACAC 58.545 42.857 0.00 0.00 40.44 3.32
557 566 2.159379 TGTGCATTACAACGCAAACACA 60.159 40.909 0.00 0.00 40.44 3.72
558 567 2.467305 GTGCATTACAACGCAAACACAG 59.533 45.455 0.00 0.00 40.44 3.66
559 568 1.451651 GCATTACAACGCAAACACAGC 59.548 47.619 0.00 0.00 0.00 4.40
560 569 2.858260 GCATTACAACGCAAACACAGCT 60.858 45.455 0.00 0.00 0.00 4.24
561 570 3.608241 GCATTACAACGCAAACACAGCTA 60.608 43.478 0.00 0.00 0.00 3.32
562 571 3.595709 TTACAACGCAAACACAGCTAC 57.404 42.857 0.00 0.00 0.00 3.58
563 572 1.663695 ACAACGCAAACACAGCTACT 58.336 45.000 0.00 0.00 0.00 2.57
564 573 2.828877 ACAACGCAAACACAGCTACTA 58.171 42.857 0.00 0.00 0.00 1.82
565 574 2.542595 ACAACGCAAACACAGCTACTAC 59.457 45.455 0.00 0.00 0.00 2.73
566 575 1.792006 ACGCAAACACAGCTACTACC 58.208 50.000 0.00 0.00 0.00 3.18
567 576 1.069513 ACGCAAACACAGCTACTACCA 59.930 47.619 0.00 0.00 0.00 3.25
568 577 2.139917 CGCAAACACAGCTACTACCAA 58.860 47.619 0.00 0.00 0.00 3.67
569 578 2.096417 CGCAAACACAGCTACTACCAAC 60.096 50.000 0.00 0.00 0.00 3.77
570 579 2.875933 GCAAACACAGCTACTACCAACA 59.124 45.455 0.00 0.00 0.00 3.33
571 580 3.314080 GCAAACACAGCTACTACCAACAA 59.686 43.478 0.00 0.00 0.00 2.83
572 581 4.201970 GCAAACACAGCTACTACCAACAAA 60.202 41.667 0.00 0.00 0.00 2.83
573 582 5.677598 GCAAACACAGCTACTACCAACAAAA 60.678 40.000 0.00 0.00 0.00 2.44
574 583 5.494632 AACACAGCTACTACCAACAAAAC 57.505 39.130 0.00 0.00 0.00 2.43
575 584 3.558418 ACACAGCTACTACCAACAAAACG 59.442 43.478 0.00 0.00 0.00 3.60
576 585 2.546789 ACAGCTACTACCAACAAAACGC 59.453 45.455 0.00 0.00 0.00 4.84
577 586 2.546368 CAGCTACTACCAACAAAACGCA 59.454 45.455 0.00 0.00 0.00 5.24
578 587 2.546789 AGCTACTACCAACAAAACGCAC 59.453 45.455 0.00 0.00 0.00 5.34
579 588 2.350102 GCTACTACCAACAAAACGCACC 60.350 50.000 0.00 0.00 0.00 5.01
580 589 2.047002 ACTACCAACAAAACGCACCT 57.953 45.000 0.00 0.00 0.00 4.00
581 590 1.944709 ACTACCAACAAAACGCACCTC 59.055 47.619 0.00 0.00 0.00 3.85
582 591 1.944024 CTACCAACAAAACGCACCTCA 59.056 47.619 0.00 0.00 0.00 3.86
583 592 1.178276 ACCAACAAAACGCACCTCAA 58.822 45.000 0.00 0.00 0.00 3.02
638 653 3.827302 ACACGAGTGACTCTTTGTATCCT 59.173 43.478 11.26 0.00 0.00 3.24
639 654 4.169508 CACGAGTGACTCTTTGTATCCTG 58.830 47.826 11.26 0.00 0.00 3.86
641 656 3.367395 CGAGTGACTCTTTGTATCCTGCA 60.367 47.826 11.26 0.00 0.00 4.41
689 817 5.906838 TCACGTCGAATCTGAAAACAATTTG 59.093 36.000 0.00 0.00 0.00 2.32
696 824 6.862608 CGAATCTGAAAACAATTTGATGTCCA 59.137 34.615 2.79 0.00 31.81 4.02
697 825 7.381948 CGAATCTGAAAACAATTTGATGTCCAA 59.618 33.333 2.79 0.00 31.81 3.53
698 826 7.951530 ATCTGAAAACAATTTGATGTCCAAC 57.048 32.000 2.79 0.00 33.85 3.77
699 827 6.871844 TCTGAAAACAATTTGATGTCCAACA 58.128 32.000 2.79 0.00 33.85 3.33
700 828 7.326454 TCTGAAAACAATTTGATGTCCAACAA 58.674 30.769 2.79 0.00 33.85 2.83
701 829 7.277539 TCTGAAAACAATTTGATGTCCAACAAC 59.722 33.333 2.79 0.00 33.85 3.32
702 830 6.314896 TGAAAACAATTTGATGTCCAACAACC 59.685 34.615 2.79 0.00 33.85 3.77
703 831 5.350504 AACAATTTGATGTCCAACAACCA 57.649 34.783 2.79 0.00 33.85 3.67
704 832 4.947645 ACAATTTGATGTCCAACAACCAG 58.052 39.130 2.79 0.00 33.85 4.00
705 833 4.648762 ACAATTTGATGTCCAACAACCAGA 59.351 37.500 2.79 0.00 33.85 3.86
706 834 5.221303 ACAATTTGATGTCCAACAACCAGAG 60.221 40.000 2.79 0.00 33.85 3.35
707 835 1.896220 TGATGTCCAACAACCAGAGC 58.104 50.000 0.00 0.00 0.00 4.09
708 836 0.798776 GATGTCCAACAACCAGAGCG 59.201 55.000 0.00 0.00 0.00 5.03
709 837 0.108585 ATGTCCAACAACCAGAGCGT 59.891 50.000 0.00 0.00 0.00 5.07
710 838 0.531974 TGTCCAACAACCAGAGCGTC 60.532 55.000 0.00 0.00 0.00 5.19
711 839 1.070786 TCCAACAACCAGAGCGTCC 59.929 57.895 0.00 0.00 0.00 4.79
721 849 1.134280 CCAGAGCGTCCAATCAAGGAT 60.134 52.381 0.00 0.00 40.42 3.24
725 853 1.017387 GCGTCCAATCAAGGATCACC 58.983 55.000 0.00 0.00 40.42 4.02
778 913 3.742983 GGGCTCTAGTCAAAGACCG 57.257 57.895 0.00 0.00 29.01 4.79
851 986 1.731969 CTTTGACGACCGACCGACC 60.732 63.158 3.56 0.00 0.00 4.79
852 987 3.541093 TTTGACGACCGACCGACCG 62.541 63.158 3.56 0.00 0.00 4.79
853 988 4.986645 TGACGACCGACCGACCGA 62.987 66.667 9.46 0.00 0.00 4.69
854 989 4.451652 GACGACCGACCGACCGAC 62.452 72.222 9.46 1.85 0.00 4.79
857 992 4.157958 GACCGACCGACCGACGAG 62.158 72.222 0.00 0.00 45.77 4.18
865 1000 4.808238 GACCGACGAGGCGACGAC 62.808 72.222 12.56 0.00 46.01 4.34
893 1028 1.072332 TCAGCGCCCAAGCAAGTTA 59.928 52.632 2.29 0.00 39.83 2.24
964 1103 2.613977 CGGGGGATTAGCAGCAAGATAG 60.614 54.545 0.00 0.00 0.00 2.08
965 1104 2.431454 GGGGATTAGCAGCAAGATAGC 58.569 52.381 0.00 0.00 0.00 2.97
986 1126 1.238625 TTTACGGGCCGCAGAAAAGG 61.239 55.000 28.71 0.00 0.00 3.11
1004 1144 1.224592 GTTGGCCCGGACAGATGAT 59.775 57.895 0.73 0.00 0.00 2.45
1159 1311 0.178998 CTCCATCTCCATGCCCAAGG 60.179 60.000 0.00 0.00 0.00 3.61
1226 1381 3.695606 AGCAGCCTTCGCTCGGAA 61.696 61.111 0.00 0.00 43.95 4.30
1272 1427 1.551019 GGAGGTACACCCGGCTTCTT 61.551 60.000 0.00 0.00 38.74 2.52
1278 1435 3.936203 ACCCGGCTTCTTCGTGCA 61.936 61.111 0.00 0.00 0.00 4.57
1312 1469 1.062587 CAGGCTTGCTTTCGGAATACG 59.937 52.381 0.00 0.00 46.11 3.06
1322 1479 1.027357 TCGGAATACGGTAGAGGCAC 58.973 55.000 0.00 0.00 44.45 5.01
1334 1491 0.612174 AGAGGCACTAGAGGCGTTCA 60.612 55.000 8.05 0.00 41.55 3.18
1343 1500 0.904865 AGAGGCGTTCATCCAGTCCA 60.905 55.000 0.00 0.00 0.00 4.02
1346 1503 2.109126 GCGTTCATCCAGTCCAGCC 61.109 63.158 0.00 0.00 0.00 4.85
1410 1567 4.641645 CCGGAAGCTGCCACACCA 62.642 66.667 12.53 0.00 0.00 4.17
1499 1656 2.046217 GGCCCTCCCTTCGTGAAC 60.046 66.667 0.00 0.00 0.00 3.18
1575 1732 2.066393 CCATCCCTTCTCCTCGCCA 61.066 63.158 0.00 0.00 0.00 5.69
1577 1734 2.066999 ATCCCTTCTCCTCGCCACC 61.067 63.158 0.00 0.00 0.00 4.61
1600 1757 4.148825 GGTGATCGCCGCCACTCT 62.149 66.667 10.09 0.00 44.82 3.24
1601 1758 2.125512 GTGATCGCCGCCACTCTT 60.126 61.111 0.00 0.00 0.00 2.85
1602 1759 2.167861 GTGATCGCCGCCACTCTTC 61.168 63.158 0.00 0.00 0.00 2.87
1663 1831 2.344535 ACCATTTGCAGACTGGTGC 58.655 52.632 14.09 0.00 41.65 5.01
1700 1868 6.661304 ATTCTTGATATGAAATTCCAGGCC 57.339 37.500 0.00 0.00 0.00 5.19
1702 1870 3.969466 TGATATGAAATTCCAGGCCCA 57.031 42.857 0.00 0.00 0.00 5.36
1704 1872 3.462954 TGATATGAAATTCCAGGCCCAGA 59.537 43.478 0.00 0.00 0.00 3.86
1705 1873 2.449137 ATGAAATTCCAGGCCCAGAG 57.551 50.000 0.00 0.00 0.00 3.35
1771 1939 1.097547 CCAGCCGCCATGAAAGGTAG 61.098 60.000 0.00 0.00 0.00 3.18
1774 1942 1.103398 GCCGCCATGAAAGGTAGCAT 61.103 55.000 0.00 0.00 0.00 3.79
1775 1943 1.813862 GCCGCCATGAAAGGTAGCATA 60.814 52.381 0.00 0.00 0.00 3.14
1776 1944 1.873591 CCGCCATGAAAGGTAGCATAC 59.126 52.381 0.00 0.00 42.04 2.39
1779 1947 4.563580 CCGCCATGAAAGGTAGCATACTAT 60.564 45.833 0.00 0.00 42.51 2.12
1782 1962 6.350194 CGCCATGAAAGGTAGCATACTATCTA 60.350 42.308 0.00 0.00 39.00 1.98
1792 1972 8.469200 AGGTAGCATACTATCTAGTAGTACTCG 58.531 40.741 5.96 0.07 45.97 4.18
1809 1989 7.166691 AGTACTCGTAATGTGAATTACCACT 57.833 36.000 0.00 0.85 37.89 4.00
1812 1992 7.400599 ACTCGTAATGTGAATTACCACTAGA 57.599 36.000 0.00 0.00 37.89 2.43
1815 1995 9.314321 CTCGTAATGTGAATTACCACTAGAAAT 57.686 33.333 0.00 0.00 37.89 2.17
1826 2006 9.606631 AATTACCACTAGAAATCAGTGATTCTC 57.393 33.333 18.52 16.31 45.10 2.87
1994 2174 0.033504 TCTTCACGAAGGTGCCTGAC 59.966 55.000 6.94 0.00 44.03 3.51
2163 2347 4.836825 TCAGGTGATTCTCTGAACAATCC 58.163 43.478 7.50 0.00 37.11 3.01
2165 2349 5.013495 TCAGGTGATTCTCTGAACAATCCTT 59.987 40.000 7.50 0.00 37.11 3.36
2166 2350 5.123502 CAGGTGATTCTCTGAACAATCCTTG 59.876 44.000 6.56 0.00 33.11 3.61
2194 2378 2.306341 TAGTGCTCATGCTTCTCTGC 57.694 50.000 0.00 0.00 40.48 4.26
2198 2382 0.745128 GCTCATGCTTCTCTGCTGCT 60.745 55.000 0.00 0.00 36.03 4.24
2211 2395 1.983605 CTGCTGCTGAAATTCTTTGCG 59.016 47.619 0.00 0.00 0.00 4.85
2286 2470 0.235665 GGCAATGATCACGTATGCCG 59.764 55.000 20.99 0.00 46.11 5.69
2390 2574 2.179517 CTCTCCCGTGTGTCGCTC 59.820 66.667 0.00 0.00 38.35 5.03
2417 2601 3.165498 GCCGAGCGTGATTTCGTT 58.835 55.556 0.00 0.00 35.14 3.85
2432 2616 1.005037 CGTTGTGCAGGTGAGCCTA 60.005 57.895 0.00 0.00 44.97 3.93
2451 2650 1.409412 ATATAGCTCGCGCGTCAAAG 58.591 50.000 30.98 20.58 42.32 2.77
2453 2652 2.890847 ATAGCTCGCGCGTCAAAGCT 62.891 55.000 35.44 35.44 46.35 3.74
2619 2818 1.483827 TCCGCTTCATCTCTGCATTCT 59.516 47.619 0.00 0.00 0.00 2.40
2666 2868 4.109766 GTTTTGTTTTGAAAGAGGGGTCG 58.890 43.478 0.00 0.00 0.00 4.79
2684 2887 3.504520 GGTCGGTGTATGGTTTTCATGTT 59.495 43.478 0.00 0.00 37.30 2.71
2780 2983 3.342719 CCTCATATCGCTCTCTGCTCTA 58.657 50.000 0.00 0.00 40.11 2.43
2811 3016 6.490040 TCATGTATGATACTAGCTGCACTACA 59.510 38.462 1.02 0.00 0.00 2.74
2830 3035 3.775202 ACATTGATTTCTCCTCGTCTCG 58.225 45.455 0.00 0.00 0.00 4.04
2872 3077 8.581578 ACTTTTCACTGTTAAGTTCCTGAAAAA 58.418 29.630 0.00 0.00 35.69 1.94
2933 3138 2.537792 GATGAACCGACTCGCCGACA 62.538 60.000 0.00 0.00 0.00 4.35
2948 3153 1.134530 CGACAGCGTCTTCGATCACC 61.135 60.000 7.03 0.00 37.43 4.02
2967 3172 1.673168 CCTGAACATAGAAGCCTGCC 58.327 55.000 0.00 0.00 0.00 4.85
3023 3228 0.744874 GACGGGTACATGCAGCTAGA 59.255 55.000 0.00 0.00 0.00 2.43
3034 3239 4.590647 ACATGCAGCTAGAAGCCTAGATAA 59.409 41.667 0.00 0.00 43.77 1.75
3071 3280 6.273825 AGTTCATAGTAATTCTAGCACCGTG 58.726 40.000 0.00 0.00 31.67 4.94
3238 3447 1.148157 CTGATCCATCACGGTGCGTC 61.148 60.000 2.51 0.00 38.32 5.19
3269 3478 1.164411 CTGCACGGCCAACTTATTGA 58.836 50.000 2.24 0.00 38.15 2.57
3278 3487 2.009774 CCAACTTATTGACGCTCCAGG 58.990 52.381 0.00 0.00 38.15 4.45
3463 3695 4.803426 CTGGGAGCGGCAGTCGTC 62.803 72.222 1.45 0.00 41.72 4.20
3470 3702 1.138883 GCGGCAGTCGTCATCTACA 59.861 57.895 0.00 0.00 41.72 2.74
3472 3704 1.481240 CGGCAGTCGTCATCTACATG 58.519 55.000 0.00 0.00 0.00 3.21
3490 3722 2.283676 ACCGGGTCCATCTCACGT 60.284 61.111 6.32 0.00 0.00 4.49
3491 3723 2.184322 CCGGGTCCATCTCACGTG 59.816 66.667 9.94 9.94 0.00 4.49
3537 3769 0.731417 CTGATCGTAAGTCCGTCCGT 59.269 55.000 0.00 0.00 39.48 4.69
3556 3788 3.577313 GAGAGCATTTCCGCCGCC 61.577 66.667 0.00 0.00 0.00 6.13
3569 3801 3.798650 CCGCCGCGAGAAATGCAA 61.799 61.111 15.93 0.00 0.00 4.08
3570 3802 2.574212 CGCCGCGAGAAATGCAAC 60.574 61.111 8.23 0.00 0.00 4.17
3571 3803 2.560861 GCCGCGAGAAATGCAACA 59.439 55.556 8.23 0.00 0.00 3.33
3574 3806 0.179215 CCGCGAGAAATGCAACAGTC 60.179 55.000 8.23 0.00 0.00 3.51
3587 3819 2.417933 GCAACAGTCTGCTTTGATCGAT 59.582 45.455 0.00 0.00 39.34 3.59
3609 3842 1.462426 TTTGGTGGACTAATGGGGGT 58.538 50.000 0.00 0.00 0.00 4.95
3640 3873 2.359107 CGCATGCAGGTGGTGTCT 60.359 61.111 19.57 0.00 0.00 3.41
3799 4032 4.070552 GCCGCCAAGGACGTCTCT 62.071 66.667 16.46 8.13 45.00 3.10
3869 4102 2.124942 GGCTCTACTGTGCCTGGC 60.125 66.667 12.87 12.87 46.18 4.85
3889 4122 3.305516 GCAAACCCCACCCAGCAG 61.306 66.667 0.00 0.00 0.00 4.24
3919 4152 1.590238 CTCTTTCCGTCGTGATCATGC 59.410 52.381 10.24 4.84 0.00 4.06
3925 4158 2.489751 TCGTGATCATGCGCGAGT 59.510 55.556 12.10 0.00 44.73 4.18
3936 4169 2.598632 GCGCGAGTGACAAGCAGTT 61.599 57.895 12.10 0.00 0.00 3.16
3937 4170 1.934463 CGCGAGTGACAAGCAGTTT 59.066 52.632 0.00 0.00 0.00 2.66
3938 4171 0.111089 CGCGAGTGACAAGCAGTTTC 60.111 55.000 0.00 0.00 0.00 2.78
3941 4174 0.937304 GAGTGACAAGCAGTTTCGCA 59.063 50.000 0.00 0.00 0.00 5.10
3942 4175 0.657840 AGTGACAAGCAGTTTCGCAC 59.342 50.000 0.00 0.00 0.00 5.34
3943 4176 0.654472 GTGACAAGCAGTTTCGCACG 60.654 55.000 0.00 0.00 0.00 5.34
3944 4177 0.808060 TGACAAGCAGTTTCGCACGA 60.808 50.000 0.00 0.00 0.00 4.35
3978 4211 4.713824 TGACCCTCACACGATACTTAAG 57.286 45.455 0.00 0.00 0.00 1.85
3984 4217 5.105877 CCCTCACACGATACTTAAGACAAGA 60.106 44.000 10.09 0.00 0.00 3.02
4002 4235 2.738521 CGTCGGCACTTCCCACAG 60.739 66.667 0.00 0.00 0.00 3.66
4022 4255 3.873952 CAGAATGGATCTTCGGAAGTTCC 59.126 47.826 28.96 28.96 44.27 3.62
4061 4294 1.610038 TGCATTGCACAGTTGAAGAGG 59.390 47.619 7.38 0.00 31.71 3.69
4068 4301 3.141398 GCACAGTTGAAGAGGTGATGAA 58.859 45.455 0.00 0.00 33.16 2.57
4094 4335 2.005451 CCATGAGAGAACCTCTTTGCG 58.995 52.381 0.00 0.00 41.35 4.85
4102 4343 2.066262 GAACCTCTTTGCGACGAATCA 58.934 47.619 0.00 0.00 0.00 2.57
4110 4351 6.846283 CCTCTTTGCGACGAATCATATAAAAC 59.154 38.462 0.00 0.00 0.00 2.43
4175 4416 7.145932 AGTTTCCAGATGCTATAACAACAAC 57.854 36.000 0.00 0.00 0.00 3.32
4176 4417 6.151144 AGTTTCCAGATGCTATAACAACAACC 59.849 38.462 0.00 0.00 0.00 3.77
4177 4418 5.172687 TCCAGATGCTATAACAACAACCA 57.827 39.130 0.00 0.00 0.00 3.67
4178 4419 5.754782 TCCAGATGCTATAACAACAACCAT 58.245 37.500 0.00 0.00 0.00 3.55
4180 4421 6.992123 TCCAGATGCTATAACAACAACCATAG 59.008 38.462 0.00 0.00 0.00 2.23
4195 4673 9.645059 CAACAACCATAGAATATACATCGATCT 57.355 33.333 0.00 0.00 0.00 2.75
4206 4684 9.429359 GAATATACATCGATCTTTGAGGAACAT 57.571 33.333 0.00 0.00 0.00 2.71
4221 4699 7.186570 TGAGGAACATGATCACATTCTCTAA 57.813 36.000 16.46 6.52 34.15 2.10
4267 4745 8.306761 GGGTGAAAATGAGTGAAAATAGACAAT 58.693 33.333 0.00 0.00 0.00 2.71
4346 4827 1.109323 ACTCTTGCTTTGCACCACCC 61.109 55.000 0.00 0.00 38.71 4.61
4379 4896 5.011635 TGGGGAGAAAAACTTAGCAATTTCC 59.988 40.000 0.00 0.00 33.35 3.13
4382 4899 4.556233 AGAAAAACTTAGCAATTTCCCGC 58.444 39.130 0.00 0.00 33.35 6.13
4399 4931 1.592223 GCACGGGTCAGAGCTACTT 59.408 57.895 0.00 0.00 0.00 2.24
4403 4935 2.097791 CACGGGTCAGAGCTACTTACTC 59.902 54.545 0.00 0.00 0.00 2.59
4414 4946 2.793237 GCTACTTACTCTGACGCTCAGC 60.793 54.545 9.34 0.00 43.95 4.26
4417 4949 2.297597 ACTTACTCTGACGCTCAGCTTT 59.702 45.455 0.00 0.00 43.95 3.51
4419 4951 0.676184 ACTCTGACGCTCAGCTTTGA 59.324 50.000 0.00 0.00 43.95 2.69
4444 4976 1.376037 AGCACGAAAGCTACTGCCC 60.376 57.895 0.00 0.00 44.50 5.36
4474 5006 1.115467 ATAGGTCAGCTCCAAGGTCG 58.885 55.000 0.00 0.00 0.00 4.79
4502 5034 5.912892 AGTTGAACCCAAATCGTCATTTTT 58.087 33.333 0.00 0.00 33.49 1.94
4579 5111 2.083774 CCAAGTTTAGCGCTGGAATGA 58.916 47.619 22.90 0.00 0.00 2.57
4582 5114 3.059352 AGTTTAGCGCTGGAATGAGTT 57.941 42.857 22.90 0.00 0.00 3.01
4584 5116 4.770795 AGTTTAGCGCTGGAATGAGTTAT 58.229 39.130 22.90 0.00 0.00 1.89
4590 5122 4.752101 AGCGCTGGAATGAGTTATATTGAC 59.248 41.667 10.39 0.00 0.00 3.18
4594 5128 6.205464 CGCTGGAATGAGTTATATTGACCAAT 59.795 38.462 0.64 0.64 34.93 3.16
4595 5129 7.387673 CGCTGGAATGAGTTATATTGACCAATA 59.612 37.037 5.08 5.08 37.64 1.90
4615 5149 9.067986 ACCAATAGAGCTATATTTGGTTAAAGC 57.932 33.333 20.31 0.00 29.69 3.51
4623 5157 7.829211 AGCTATATTTGGTTAAAGCTTCAGACA 59.171 33.333 0.00 0.00 0.00 3.41
4635 5170 3.823304 AGCTTCAGACAAGGGTCATTTTC 59.177 43.478 0.00 0.00 46.80 2.29
4638 5173 2.105821 TCAGACAAGGGTCATTTTCGGT 59.894 45.455 0.00 0.00 46.80 4.69
4657 5192 5.134661 TCGGTTAAACATTCAAAAGAGGGT 58.865 37.500 0.00 0.00 0.00 4.34
4661 5196 6.447162 GTTAAACATTCAAAAGAGGGTCAGG 58.553 40.000 0.00 0.00 0.00 3.86
4662 5197 3.884037 ACATTCAAAAGAGGGTCAGGT 57.116 42.857 0.00 0.00 0.00 4.00
4677 5212 4.868171 GGGTCAGGTTTTGTCAAAAAGAAC 59.132 41.667 12.26 12.44 35.96 3.01
4716 5251 1.471676 CCGAGTGCATCCAGAAGGTAC 60.472 57.143 0.00 0.00 35.89 3.34
4732 5267 9.155975 CCAGAAGGTACAGTATATTGCATATTC 57.844 37.037 0.00 0.00 0.00 1.75
4733 5268 9.710900 CAGAAGGTACAGTATATTGCATATTCA 57.289 33.333 0.00 0.00 0.00 2.57
4737 5272 9.494271 AGGTACAGTATATTGCATATTCAACAG 57.506 33.333 0.00 0.00 0.00 3.16
4738 5273 9.489084 GGTACAGTATATTGCATATTCAACAGA 57.511 33.333 0.00 0.00 0.00 3.41
4746 5281 7.878477 ATTGCATATTCAACAGAAACACAAG 57.122 32.000 0.00 0.00 0.00 3.16
4747 5282 5.771469 TGCATATTCAACAGAAACACAAGG 58.229 37.500 0.00 0.00 0.00 3.61
4748 5283 4.622740 GCATATTCAACAGAAACACAAGGC 59.377 41.667 0.00 0.00 0.00 4.35
4749 5284 2.842208 TTCAACAGAAACACAAGGCG 57.158 45.000 0.00 0.00 0.00 5.52
4750 5285 1.745232 TCAACAGAAACACAAGGCGT 58.255 45.000 0.00 0.00 0.00 5.68
4751 5286 2.088423 TCAACAGAAACACAAGGCGTT 58.912 42.857 0.00 0.00 0.00 4.84
4752 5287 2.490115 TCAACAGAAACACAAGGCGTTT 59.510 40.909 0.00 0.00 39.23 3.60
4835 5370 1.404035 GGTTGAACAAAACTGGCGACT 59.596 47.619 0.00 0.00 0.00 4.18
4837 5372 3.105937 GTTGAACAAAACTGGCGACTTC 58.894 45.455 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 50 2.032620 CCACTAGGCAGGGTAGTGTAG 58.967 57.143 9.83 0.00 44.02 2.74
48 51 1.360162 ACCACTAGGCAGGGTAGTGTA 59.640 52.381 9.83 0.00 44.02 2.90
49 52 0.116541 ACCACTAGGCAGGGTAGTGT 59.883 55.000 9.83 0.00 44.02 3.55
50 53 2.032620 CTACCACTAGGCAGGGTAGTG 58.967 57.143 17.34 9.28 45.82 2.74
51 54 2.456073 CTACCACTAGGCAGGGTAGT 57.544 55.000 17.34 0.00 45.82 2.73
53 56 2.176364 CCTACTACCACTAGGCAGGGTA 59.824 54.545 0.00 0.00 39.06 3.69
55 58 1.705873 CCTACTACCACTAGGCAGGG 58.294 60.000 0.00 0.00 39.06 4.45
56 59 1.063114 ACCCTACTACCACTAGGCAGG 60.063 57.143 0.00 0.00 39.06 4.85
58 61 2.043389 TCAACCCTACTACCACTAGGCA 59.957 50.000 0.00 0.00 39.06 4.75
59 62 2.743553 TCAACCCTACTACCACTAGGC 58.256 52.381 0.00 0.00 39.06 3.93
60 63 5.078256 CCTATCAACCCTACTACCACTAGG 58.922 50.000 0.00 0.00 42.21 3.02
61 64 5.950023 TCCTATCAACCCTACTACCACTAG 58.050 45.833 0.00 0.00 0.00 2.57
62 65 5.999987 TCCTATCAACCCTACTACCACTA 57.000 43.478 0.00 0.00 0.00 2.74
63 66 4.894252 TCCTATCAACCCTACTACCACT 57.106 45.455 0.00 0.00 0.00 4.00
64 67 4.283722 CCATCCTATCAACCCTACTACCAC 59.716 50.000 0.00 0.00 0.00 4.16
65 68 4.489737 CCATCCTATCAACCCTACTACCA 58.510 47.826 0.00 0.00 0.00 3.25
66 69 3.838903 CCCATCCTATCAACCCTACTACC 59.161 52.174 0.00 0.00 0.00 3.18
67 70 4.283722 CACCCATCCTATCAACCCTACTAC 59.716 50.000 0.00 0.00 0.00 2.73
68 71 4.489737 CACCCATCCTATCAACCCTACTA 58.510 47.826 0.00 0.00 0.00 1.82
69 72 3.318313 CACCCATCCTATCAACCCTACT 58.682 50.000 0.00 0.00 0.00 2.57
91 94 1.281867 TCAATTCACTAGGCCACTGGG 59.718 52.381 5.01 0.00 37.18 4.45
92 95 2.787473 TCAATTCACTAGGCCACTGG 57.213 50.000 5.01 0.00 0.00 4.00
93 96 4.264253 TGATTCAATTCACTAGGCCACTG 58.736 43.478 5.01 0.00 0.00 3.66
94 97 4.574674 TGATTCAATTCACTAGGCCACT 57.425 40.909 5.01 0.00 0.00 4.00
144 148 2.284190 GTCTATTTGGAGCTGGCTGTC 58.716 52.381 0.00 0.00 0.00 3.51
161 165 4.868268 TGCATCTACTAGTAAGGTGGTCT 58.132 43.478 3.76 0.00 0.00 3.85
197 201 4.142293 GCATTTCTGACCCTGATCTTTTCC 60.142 45.833 0.00 0.00 0.00 3.13
209 213 3.905784 CAAAGTTGGAGCATTTCTGACC 58.094 45.455 0.00 0.00 0.00 4.02
259 268 9.243105 CCCCAAGATTTCTTCTGAAACTTATAA 57.757 33.333 0.00 0.00 43.90 0.98
262 271 6.715264 GTCCCCAAGATTTCTTCTGAAACTTA 59.285 38.462 0.00 0.00 43.90 2.24
269 278 3.055819 TCGAGTCCCCAAGATTTCTTCTG 60.056 47.826 0.00 0.00 33.93 3.02
273 282 2.637872 TGTTCGAGTCCCCAAGATTTCT 59.362 45.455 0.00 0.00 0.00 2.52
278 287 1.070134 CAACTGTTCGAGTCCCCAAGA 59.930 52.381 0.00 0.00 31.73 3.02
280 289 0.107831 CCAACTGTTCGAGTCCCCAA 59.892 55.000 0.00 0.00 31.73 4.12
283 292 0.670854 GAGCCAACTGTTCGAGTCCC 60.671 60.000 0.00 0.00 31.73 4.46
284 293 0.033504 TGAGCCAACTGTTCGAGTCC 59.966 55.000 0.00 0.00 31.73 3.85
288 297 2.571212 ACAATTGAGCCAACTGTTCGA 58.429 42.857 13.59 0.00 29.31 3.71
290 299 5.772521 ACAATACAATTGAGCCAACTGTTC 58.227 37.500 13.59 0.00 35.45 3.18
291 300 5.789643 ACAATACAATTGAGCCAACTGTT 57.210 34.783 13.59 0.00 35.45 3.16
293 302 5.794945 CGTAACAATACAATTGAGCCAACTG 59.205 40.000 13.59 2.18 32.02 3.16
294 303 5.703592 TCGTAACAATACAATTGAGCCAACT 59.296 36.000 13.59 0.00 32.02 3.16
297 306 4.393680 GGTCGTAACAATACAATTGAGCCA 59.606 41.667 13.59 0.00 32.02 4.75
298 307 4.634443 AGGTCGTAACAATACAATTGAGCC 59.366 41.667 13.59 0.00 32.02 4.70
303 312 3.692593 GCCCAGGTCGTAACAATACAATT 59.307 43.478 0.00 0.00 32.02 2.32
312 321 3.698820 ACCGGCCCAGGTCGTAAC 61.699 66.667 10.19 0.00 41.46 2.50
320 329 4.101448 CCAGGAAGACCGGCCCAG 62.101 72.222 0.00 0.00 41.83 4.45
324 333 1.119574 TATAGCCCAGGAAGACCGGC 61.120 60.000 0.00 0.00 41.11 6.13
326 335 1.341531 CTGTATAGCCCAGGAAGACCG 59.658 57.143 0.00 0.00 41.83 4.79
327 336 2.365941 GTCTGTATAGCCCAGGAAGACC 59.634 54.545 0.00 0.00 0.00 3.85
328 337 3.031736 TGTCTGTATAGCCCAGGAAGAC 58.968 50.000 0.00 0.00 34.52 3.01
329 338 3.300388 CTGTCTGTATAGCCCAGGAAGA 58.700 50.000 0.00 0.00 0.00 2.87
330 339 3.034635 ACTGTCTGTATAGCCCAGGAAG 58.965 50.000 9.60 0.00 31.09 3.46
331 340 3.116096 ACTGTCTGTATAGCCCAGGAA 57.884 47.619 9.60 0.00 31.09 3.36
332 341 2.848678 ACTGTCTGTATAGCCCAGGA 57.151 50.000 9.60 0.00 31.09 3.86
333 342 3.034635 AGAACTGTCTGTATAGCCCAGG 58.965 50.000 9.60 0.00 30.83 4.45
334 343 4.052159 CAGAACTGTCTGTATAGCCCAG 57.948 50.000 5.01 5.01 45.44 4.45
372 381 6.578023 CCAGTTCTTTGTTGGGATACAAAAA 58.422 36.000 0.00 0.00 44.72 1.94
373 382 5.452636 GCCAGTTCTTTGTTGGGATACAAAA 60.453 40.000 0.00 0.00 44.72 2.44
374 383 4.038642 GCCAGTTCTTTGTTGGGATACAAA 59.961 41.667 0.00 0.00 43.62 2.83
375 384 3.572255 GCCAGTTCTTTGTTGGGATACAA 59.428 43.478 0.00 0.00 36.30 2.41
376 385 3.153919 GCCAGTTCTTTGTTGGGATACA 58.846 45.455 0.00 0.00 39.74 2.29
377 386 3.153919 TGCCAGTTCTTTGTTGGGATAC 58.846 45.455 0.00 0.00 32.53 2.24
378 387 3.420893 CTGCCAGTTCTTTGTTGGGATA 58.579 45.455 0.00 0.00 31.65 2.59
379 388 2.242043 CTGCCAGTTCTTTGTTGGGAT 58.758 47.619 0.00 0.00 31.65 3.85
380 389 1.691196 CTGCCAGTTCTTTGTTGGGA 58.309 50.000 0.00 0.00 32.53 4.37
381 390 0.032540 GCTGCCAGTTCTTTGTTGGG 59.967 55.000 0.00 0.00 32.53 4.12
382 391 0.032540 GGCTGCCAGTTCTTTGTTGG 59.967 55.000 15.17 0.00 35.06 3.77
383 392 0.318107 CGGCTGCCAGTTCTTTGTTG 60.318 55.000 20.29 0.00 0.00 3.33
384 393 0.751643 ACGGCTGCCAGTTCTTTGTT 60.752 50.000 20.29 0.00 0.00 2.83
385 394 0.751643 AACGGCTGCCAGTTCTTTGT 60.752 50.000 20.29 2.40 0.00 2.83
386 395 1.234821 TAACGGCTGCCAGTTCTTTG 58.765 50.000 24.61 8.02 0.00 2.77
387 396 1.975660 TTAACGGCTGCCAGTTCTTT 58.024 45.000 24.61 10.16 0.00 2.52
388 397 1.975660 TTTAACGGCTGCCAGTTCTT 58.024 45.000 24.61 10.44 0.00 2.52
389 398 1.975660 TTTTAACGGCTGCCAGTTCT 58.024 45.000 24.61 11.01 0.00 3.01
390 399 2.785713 TTTTTAACGGCTGCCAGTTC 57.214 45.000 24.61 0.00 0.00 3.01
409 418 9.343539 GGAATACAAATAGCCAGTTCTCTATTT 57.656 33.333 0.00 0.00 42.79 1.40
410 419 8.718656 AGGAATACAAATAGCCAGTTCTCTATT 58.281 33.333 0.00 0.00 37.16 1.73
411 420 8.268878 AGGAATACAAATAGCCAGTTCTCTAT 57.731 34.615 0.00 0.00 0.00 1.98
412 421 7.676683 AGGAATACAAATAGCCAGTTCTCTA 57.323 36.000 0.00 0.00 0.00 2.43
413 422 6.567602 AGGAATACAAATAGCCAGTTCTCT 57.432 37.500 0.00 0.00 0.00 3.10
414 423 7.272978 TGTAGGAATACAAATAGCCAGTTCTC 58.727 38.462 0.00 0.00 0.00 2.87
415 424 7.195374 TGTAGGAATACAAATAGCCAGTTCT 57.805 36.000 0.00 0.00 0.00 3.01
416 425 9.209175 CTATGTAGGAATACAAATAGCCAGTTC 57.791 37.037 0.00 0.00 33.21 3.01
417 426 8.934697 TCTATGTAGGAATACAAATAGCCAGTT 58.065 33.333 0.00 0.00 33.21 3.16
418 427 8.492415 TCTATGTAGGAATACAAATAGCCAGT 57.508 34.615 0.00 0.00 33.21 4.00
419 428 9.209175 GTTCTATGTAGGAATACAAATAGCCAG 57.791 37.037 0.00 0.00 33.21 4.85
420 429 8.934697 AGTTCTATGTAGGAATACAAATAGCCA 58.065 33.333 0.00 0.00 33.21 4.75
421 430 9.209175 CAGTTCTATGTAGGAATACAAATAGCC 57.791 37.037 0.00 0.00 33.21 3.93
422 431 9.209175 CCAGTTCTATGTAGGAATACAAATAGC 57.791 37.037 0.00 0.00 33.21 2.97
423 432 9.209175 GCCAGTTCTATGTAGGAATACAAATAG 57.791 37.037 0.00 0.00 33.21 1.73
424 433 8.934697 AGCCAGTTCTATGTAGGAATACAAATA 58.065 33.333 0.00 0.00 33.21 1.40
425 434 7.716998 CAGCCAGTTCTATGTAGGAATACAAAT 59.283 37.037 0.00 0.00 33.21 2.32
426 435 7.047891 CAGCCAGTTCTATGTAGGAATACAAA 58.952 38.462 0.00 0.00 33.21 2.83
427 436 6.156256 ACAGCCAGTTCTATGTAGGAATACAA 59.844 38.462 0.00 0.00 33.21 2.41
428 437 5.661312 ACAGCCAGTTCTATGTAGGAATACA 59.339 40.000 0.00 0.00 0.00 2.29
429 438 6.163135 ACAGCCAGTTCTATGTAGGAATAC 57.837 41.667 0.00 0.00 0.00 1.89
430 439 6.808321 AACAGCCAGTTCTATGTAGGAATA 57.192 37.500 0.00 0.00 34.74 1.75
431 440 5.700402 AACAGCCAGTTCTATGTAGGAAT 57.300 39.130 0.00 0.00 34.74 3.01
432 441 5.248477 AGAAACAGCCAGTTCTATGTAGGAA 59.752 40.000 0.00 0.00 40.26 3.36
433 442 4.777896 AGAAACAGCCAGTTCTATGTAGGA 59.222 41.667 0.00 0.00 40.26 2.94
434 443 5.091261 AGAAACAGCCAGTTCTATGTAGG 57.909 43.478 0.00 0.00 40.26 3.18
435 444 5.751028 GCTAGAAACAGCCAGTTCTATGTAG 59.249 44.000 0.00 0.00 40.26 2.74
436 445 5.661458 GCTAGAAACAGCCAGTTCTATGTA 58.339 41.667 0.00 0.00 40.26 2.29
437 446 4.508662 GCTAGAAACAGCCAGTTCTATGT 58.491 43.478 0.00 0.00 40.26 2.29
448 457 2.464157 ACAGACTGGCTAGAAACAGC 57.536 50.000 3.17 0.00 41.02 4.40
449 458 3.496130 CACAACAGACTGGCTAGAAACAG 59.504 47.826 3.17 0.64 40.48 3.16
450 459 3.133901 TCACAACAGACTGGCTAGAAACA 59.866 43.478 3.17 0.00 0.00 2.83
451 460 3.728845 TCACAACAGACTGGCTAGAAAC 58.271 45.455 3.17 0.00 0.00 2.78
452 461 4.415881 TTCACAACAGACTGGCTAGAAA 57.584 40.909 3.17 0.00 0.00 2.52
453 462 4.623932 ATTCACAACAGACTGGCTAGAA 57.376 40.909 3.17 6.31 0.00 2.10
454 463 5.738619 TTATTCACAACAGACTGGCTAGA 57.261 39.130 3.17 0.00 0.00 2.43
455 464 5.877012 ACATTATTCACAACAGACTGGCTAG 59.123 40.000 7.51 0.00 0.00 3.42
456 465 5.804639 ACATTATTCACAACAGACTGGCTA 58.195 37.500 7.51 0.00 0.00 3.93
457 466 4.655963 ACATTATTCACAACAGACTGGCT 58.344 39.130 7.51 0.00 0.00 4.75
458 467 5.048782 TGAACATTATTCACAACAGACTGGC 60.049 40.000 7.51 0.00 0.00 4.85
459 468 6.558771 TGAACATTATTCACAACAGACTGG 57.441 37.500 7.51 0.00 0.00 4.00
460 469 7.587629 ACATGAACATTATTCACAACAGACTG 58.412 34.615 0.00 0.00 0.00 3.51
461 470 7.750229 ACATGAACATTATTCACAACAGACT 57.250 32.000 0.00 0.00 0.00 3.24
462 471 8.801715 AAACATGAACATTATTCACAACAGAC 57.198 30.769 0.00 0.00 0.00 3.51
463 472 9.814899 AAAAACATGAACATTATTCACAACAGA 57.185 25.926 0.00 0.00 0.00 3.41
487 496 5.122519 GGAGCAAATCCCTTTCAACAAAAA 58.877 37.500 0.00 0.00 43.01 1.94
488 497 4.702831 GGAGCAAATCCCTTTCAACAAAA 58.297 39.130 0.00 0.00 43.01 2.44
489 498 4.335400 GGAGCAAATCCCTTTCAACAAA 57.665 40.909 0.00 0.00 43.01 2.83
501 510 0.610785 TGAAACCGGGGGAGCAAATC 60.611 55.000 6.32 0.00 0.00 2.17
502 511 0.041090 ATGAAACCGGGGGAGCAAAT 59.959 50.000 6.32 0.00 0.00 2.32
503 512 0.699399 TATGAAACCGGGGGAGCAAA 59.301 50.000 6.32 0.00 0.00 3.68
504 513 0.034863 GTATGAAACCGGGGGAGCAA 60.035 55.000 6.32 0.00 0.00 3.91
505 514 1.202099 TGTATGAAACCGGGGGAGCA 61.202 55.000 6.32 0.00 0.00 4.26
506 515 0.182775 ATGTATGAAACCGGGGGAGC 59.817 55.000 6.32 0.00 0.00 4.70
507 516 2.969950 TCTATGTATGAAACCGGGGGAG 59.030 50.000 6.32 0.00 0.00 4.30
508 517 3.049108 TCTATGTATGAAACCGGGGGA 57.951 47.619 6.32 0.00 0.00 4.81
509 518 3.849563 TTCTATGTATGAAACCGGGGG 57.150 47.619 6.32 0.00 0.00 5.40
510 519 5.373222 TGATTTCTATGTATGAAACCGGGG 58.627 41.667 6.32 0.00 36.43 5.73
511 520 6.935741 TTGATTTCTATGTATGAAACCGGG 57.064 37.500 6.32 0.00 36.43 5.73
512 521 8.405531 ACATTTGATTTCTATGTATGAAACCGG 58.594 33.333 0.00 0.00 36.43 5.28
513 522 9.225201 CACATTTGATTTCTATGTATGAAACCG 57.775 33.333 0.00 0.00 36.43 4.44
514 523 9.023967 GCACATTTGATTTCTATGTATGAAACC 57.976 33.333 0.00 0.00 36.43 3.27
515 524 9.571810 TGCACATTTGATTTCTATGTATGAAAC 57.428 29.630 0.00 0.00 36.43 2.78
522 531 9.357652 GTTGTAATGCACATTTGATTTCTATGT 57.642 29.630 0.47 0.00 36.90 2.29
523 532 8.525876 CGTTGTAATGCACATTTGATTTCTATG 58.474 33.333 0.47 0.00 36.90 2.23
524 533 7.220683 GCGTTGTAATGCACATTTGATTTCTAT 59.779 33.333 0.47 0.00 40.60 1.98
525 534 6.526325 GCGTTGTAATGCACATTTGATTTCTA 59.474 34.615 0.47 0.00 40.60 2.10
526 535 5.345741 GCGTTGTAATGCACATTTGATTTCT 59.654 36.000 0.47 0.00 40.60 2.52
527 536 5.118357 TGCGTTGTAATGCACATTTGATTTC 59.882 36.000 7.38 0.00 45.33 2.17
528 537 4.987285 TGCGTTGTAATGCACATTTGATTT 59.013 33.333 7.38 0.00 45.33 2.17
529 538 4.554292 TGCGTTGTAATGCACATTTGATT 58.446 34.783 7.38 0.00 45.33 2.57
530 539 4.171663 TGCGTTGTAATGCACATTTGAT 57.828 36.364 7.38 0.00 45.33 2.57
531 540 3.632855 TGCGTTGTAATGCACATTTGA 57.367 38.095 7.38 0.00 45.33 2.69
539 548 1.451651 GCTGTGTTTGCGTTGTAATGC 59.548 47.619 1.94 1.94 41.27 3.56
540 549 2.998772 AGCTGTGTTTGCGTTGTAATG 58.001 42.857 0.00 0.00 35.28 1.90
541 550 3.813166 AGTAGCTGTGTTTGCGTTGTAAT 59.187 39.130 0.00 0.00 35.28 1.89
542 551 3.199677 AGTAGCTGTGTTTGCGTTGTAA 58.800 40.909 0.00 0.00 35.28 2.41
543 552 2.828877 AGTAGCTGTGTTTGCGTTGTA 58.171 42.857 0.00 0.00 35.28 2.41
544 553 1.663695 AGTAGCTGTGTTTGCGTTGT 58.336 45.000 0.00 0.00 35.28 3.32
545 554 2.096417 GGTAGTAGCTGTGTTTGCGTTG 60.096 50.000 0.00 0.00 35.28 4.10
546 555 2.140717 GGTAGTAGCTGTGTTTGCGTT 58.859 47.619 0.00 0.00 35.28 4.84
547 556 1.069513 TGGTAGTAGCTGTGTTTGCGT 59.930 47.619 0.00 0.00 35.28 5.24
548 557 1.790755 TGGTAGTAGCTGTGTTTGCG 58.209 50.000 0.00 0.00 35.28 4.85
549 558 2.875933 TGTTGGTAGTAGCTGTGTTTGC 59.124 45.455 0.00 0.00 0.00 3.68
550 559 5.493133 TTTGTTGGTAGTAGCTGTGTTTG 57.507 39.130 0.00 0.00 0.00 2.93
551 560 5.448089 CGTTTTGTTGGTAGTAGCTGTGTTT 60.448 40.000 0.00 0.00 0.00 2.83
552 561 4.034742 CGTTTTGTTGGTAGTAGCTGTGTT 59.965 41.667 0.00 0.00 0.00 3.32
553 562 3.558418 CGTTTTGTTGGTAGTAGCTGTGT 59.442 43.478 0.00 0.00 0.00 3.72
554 563 3.606153 GCGTTTTGTTGGTAGTAGCTGTG 60.606 47.826 0.00 0.00 0.00 3.66
555 564 2.546789 GCGTTTTGTTGGTAGTAGCTGT 59.453 45.455 0.00 0.00 0.00 4.40
556 565 2.546368 TGCGTTTTGTTGGTAGTAGCTG 59.454 45.455 0.00 0.00 0.00 4.24
557 566 2.546789 GTGCGTTTTGTTGGTAGTAGCT 59.453 45.455 0.35 0.00 0.00 3.32
558 567 2.350102 GGTGCGTTTTGTTGGTAGTAGC 60.350 50.000 0.00 0.00 0.00 3.58
559 568 3.135994 AGGTGCGTTTTGTTGGTAGTAG 58.864 45.455 0.00 0.00 0.00 2.57
560 569 3.132925 GAGGTGCGTTTTGTTGGTAGTA 58.867 45.455 0.00 0.00 0.00 1.82
561 570 1.944709 GAGGTGCGTTTTGTTGGTAGT 59.055 47.619 0.00 0.00 0.00 2.73
562 571 1.944024 TGAGGTGCGTTTTGTTGGTAG 59.056 47.619 0.00 0.00 0.00 3.18
563 572 2.039818 TGAGGTGCGTTTTGTTGGTA 57.960 45.000 0.00 0.00 0.00 3.25
564 573 1.178276 TTGAGGTGCGTTTTGTTGGT 58.822 45.000 0.00 0.00 0.00 3.67
565 574 2.285827 TTTGAGGTGCGTTTTGTTGG 57.714 45.000 0.00 0.00 0.00 3.77
566 575 5.957910 TTATTTTGAGGTGCGTTTTGTTG 57.042 34.783 0.00 0.00 0.00 3.33
567 576 6.045955 ACATTATTTTGAGGTGCGTTTTGTT 58.954 32.000 0.00 0.00 0.00 2.83
568 577 5.596845 ACATTATTTTGAGGTGCGTTTTGT 58.403 33.333 0.00 0.00 0.00 2.83
569 578 6.199908 TGAACATTATTTTGAGGTGCGTTTTG 59.800 34.615 0.00 0.00 0.00 2.44
570 579 6.276847 TGAACATTATTTTGAGGTGCGTTTT 58.723 32.000 0.00 0.00 0.00 2.43
571 580 5.837437 TGAACATTATTTTGAGGTGCGTTT 58.163 33.333 0.00 0.00 0.00 3.60
572 581 5.446143 TGAACATTATTTTGAGGTGCGTT 57.554 34.783 0.00 0.00 0.00 4.84
573 582 5.048083 ACATGAACATTATTTTGAGGTGCGT 60.048 36.000 0.00 0.00 0.00 5.24
574 583 5.401550 ACATGAACATTATTTTGAGGTGCG 58.598 37.500 0.00 0.00 0.00 5.34
575 584 7.761409 TCTACATGAACATTATTTTGAGGTGC 58.239 34.615 0.00 0.00 0.00 5.01
576 585 7.912250 GCTCTACATGAACATTATTTTGAGGTG 59.088 37.037 0.00 0.00 0.00 4.00
577 586 7.611467 TGCTCTACATGAACATTATTTTGAGGT 59.389 33.333 0.00 0.00 0.00 3.85
578 587 7.912250 GTGCTCTACATGAACATTATTTTGAGG 59.088 37.037 0.00 0.00 0.00 3.86
579 588 8.453320 TGTGCTCTACATGAACATTATTTTGAG 58.547 33.333 0.00 0.00 33.42 3.02
580 589 8.236586 GTGTGCTCTACATGAACATTATTTTGA 58.763 33.333 0.00 0.00 42.24 2.69
581 590 8.022550 TGTGTGCTCTACATGAACATTATTTTG 58.977 33.333 0.00 0.00 42.24 2.44
582 591 8.109705 TGTGTGCTCTACATGAACATTATTTT 57.890 30.769 0.00 0.00 42.24 1.82
583 592 7.686438 TGTGTGCTCTACATGAACATTATTT 57.314 32.000 0.00 0.00 42.24 1.40
638 653 2.362077 GGCCAGTTCTTTCTTCTTTGCA 59.638 45.455 0.00 0.00 0.00 4.08
639 654 2.362077 TGGCCAGTTCTTTCTTCTTTGC 59.638 45.455 0.00 0.00 0.00 3.68
641 656 4.038402 CACATGGCCAGTTCTTTCTTCTTT 59.962 41.667 13.05 0.00 0.00 2.52
644 659 2.887152 ACACATGGCCAGTTCTTTCTTC 59.113 45.455 13.05 0.00 0.00 2.87
645 660 2.887152 GACACATGGCCAGTTCTTTCTT 59.113 45.455 13.05 0.00 0.00 2.52
647 662 2.030805 GTGACACATGGCCAGTTCTTTC 60.031 50.000 13.05 3.18 0.00 2.62
689 817 0.798776 CGCTCTGGTTGTTGGACATC 59.201 55.000 0.00 0.00 0.00 3.06
696 824 1.202758 TGATTGGACGCTCTGGTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
697 825 0.396435 TGATTGGACGCTCTGGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
698 826 1.466167 CTTGATTGGACGCTCTGGTTG 59.534 52.381 0.00 0.00 0.00 3.77
699 827 1.611673 CCTTGATTGGACGCTCTGGTT 60.612 52.381 0.00 0.00 0.00 3.67
700 828 0.036010 CCTTGATTGGACGCTCTGGT 60.036 55.000 0.00 0.00 0.00 4.00
701 829 0.250234 TCCTTGATTGGACGCTCTGG 59.750 55.000 0.00 0.00 0.00 3.86
702 830 2.208431 GATCCTTGATTGGACGCTCTG 58.792 52.381 0.00 0.00 39.17 3.35
703 831 1.833630 TGATCCTTGATTGGACGCTCT 59.166 47.619 0.00 0.00 39.17 4.09
704 832 1.936547 GTGATCCTTGATTGGACGCTC 59.063 52.381 0.00 0.00 39.17 5.03
705 833 1.407437 GGTGATCCTTGATTGGACGCT 60.407 52.381 0.00 0.00 39.17 5.07
706 834 1.017387 GGTGATCCTTGATTGGACGC 58.983 55.000 0.00 0.00 39.17 5.19
707 835 1.668419 GGGTGATCCTTGATTGGACG 58.332 55.000 0.00 0.00 39.17 4.79
708 836 1.668419 CGGGTGATCCTTGATTGGAC 58.332 55.000 0.00 0.00 39.17 4.02
709 837 0.546122 CCGGGTGATCCTTGATTGGA 59.454 55.000 0.00 0.00 40.82 3.53
710 838 0.546122 TCCGGGTGATCCTTGATTGG 59.454 55.000 0.00 0.00 0.00 3.16
711 839 1.475751 CCTCCGGGTGATCCTTGATTG 60.476 57.143 0.00 0.00 0.00 2.67
721 849 2.359169 GCACTGATCCTCCGGGTGA 61.359 63.158 0.00 0.00 0.00 4.02
725 853 4.899239 GCGGCACTGATCCTCCGG 62.899 72.222 0.00 0.00 41.96 5.14
751 886 1.337823 TGACTAGAGCCCGCTGTTTTC 60.338 52.381 0.00 0.00 0.00 2.29
778 913 1.076485 AGCAATGGAGGATGGTGCC 60.076 57.895 0.00 0.00 35.80 5.01
851 986 4.847585 CTCGTCGTCGCCTCGTCG 62.848 72.222 0.00 8.03 41.69 5.12
860 995 4.400109 TGACCGCAGCTCGTCGTC 62.400 66.667 5.33 6.47 36.19 4.20
861 996 4.406173 CTGACCGCAGCTCGTCGT 62.406 66.667 5.33 0.00 34.95 4.34
900 1035 2.257207 TGCTTGGGTGCTTCTACTACT 58.743 47.619 0.00 0.00 0.00 2.57
901 1036 2.762535 TGCTTGGGTGCTTCTACTAC 57.237 50.000 0.00 0.00 0.00 2.73
903 1038 1.421646 ACTTGCTTGGGTGCTTCTACT 59.578 47.619 0.00 0.00 0.00 2.57
904 1039 1.537202 CACTTGCTTGGGTGCTTCTAC 59.463 52.381 0.00 0.00 0.00 2.59
905 1040 1.142870 ACACTTGCTTGGGTGCTTCTA 59.857 47.619 0.00 0.00 36.99 2.10
908 1043 2.162681 GATACACTTGCTTGGGTGCTT 58.837 47.619 0.00 0.00 36.99 3.91
909 1044 1.073763 TGATACACTTGCTTGGGTGCT 59.926 47.619 0.00 0.00 36.99 4.40
910 1045 1.470098 CTGATACACTTGCTTGGGTGC 59.530 52.381 0.00 0.00 36.99 5.01
911 1046 1.470098 GCTGATACACTTGCTTGGGTG 59.530 52.381 0.00 0.00 39.13 4.61
964 1103 1.858372 TTTCTGCGGCCCGTAAAAGC 61.858 55.000 4.45 0.00 0.00 3.51
965 1104 0.594110 TTTTCTGCGGCCCGTAAAAG 59.406 50.000 4.45 0.00 0.00 2.27
986 1126 0.394352 AATCATCTGTCCGGGCCAAC 60.394 55.000 2.12 0.99 0.00 3.77
1004 1144 1.459450 GCTTTTGGGCCTCACGATAA 58.541 50.000 4.53 0.00 0.00 1.75
1054 1194 2.052782 ATGAAACGGATAAGGTGGCC 57.947 50.000 0.00 0.00 0.00 5.36
1159 1311 1.202475 GGAGGATGAAGGCGAGAGAAC 60.202 57.143 0.00 0.00 0.00 3.01
1265 1420 2.035442 GGAGGTGCACGAAGAAGCC 61.035 63.158 11.45 0.31 0.00 4.35
1278 1435 1.128188 AGCCTGAAGAAACGGGAGGT 61.128 55.000 0.00 0.00 38.49 3.85
1312 1469 0.752376 ACGCCTCTAGTGCCTCTACC 60.752 60.000 0.00 0.00 0.00 3.18
1322 1479 1.067821 GGACTGGATGAACGCCTCTAG 59.932 57.143 0.00 0.00 0.00 2.43
1334 1491 1.630126 AATCAGCGGCTGGACTGGAT 61.630 55.000 28.18 11.57 34.57 3.41
1427 1584 1.298014 GCTGTACTCTGCCAGGCTT 59.702 57.895 14.15 0.00 33.40 4.35
1499 1656 2.039418 TGGATATTGGACGAGGACAGG 58.961 52.381 0.00 0.00 0.00 4.00
1552 1709 3.849951 GGAGAAGGGATGGCGCGA 61.850 66.667 12.10 0.00 0.00 5.87
1600 1757 8.469309 AAATGAGAAGAGTTTTGATGGAAGAA 57.531 30.769 0.00 0.00 0.00 2.52
1601 1758 7.941238 AGAAATGAGAAGAGTTTTGATGGAAGA 59.059 33.333 0.00 0.00 0.00 2.87
1602 1759 8.108551 AGAAATGAGAAGAGTTTTGATGGAAG 57.891 34.615 0.00 0.00 0.00 3.46
1700 1868 1.377333 GCCGTTTCCCTTCCTCTGG 60.377 63.158 0.00 0.00 0.00 3.86
1702 1870 2.663196 CGCCGTTTCCCTTCCTCT 59.337 61.111 0.00 0.00 0.00 3.69
1704 1872 3.901797 CTGCGCCGTTTCCCTTCCT 62.902 63.158 4.18 0.00 0.00 3.36
1705 1873 3.431725 CTGCGCCGTTTCCCTTCC 61.432 66.667 4.18 0.00 0.00 3.46
1782 1962 8.186821 GTGGTAATTCACATTACGAGTACTACT 58.813 37.037 0.00 0.00 44.13 2.57
1800 1980 9.606631 GAGAATCACTGATTTCTAGTGGTAATT 57.393 33.333 5.73 0.00 44.33 1.40
1809 1989 5.344066 GTGCTCGAGAATCACTGATTTCTA 58.656 41.667 18.75 0.00 31.89 2.10
1812 1992 3.055530 AGGTGCTCGAGAATCACTGATTT 60.056 43.478 18.75 0.00 31.89 2.17
1815 1995 1.550327 AGGTGCTCGAGAATCACTGA 58.450 50.000 18.75 0.00 33.17 3.41
1818 1998 7.316640 ACATATATAAGGTGCTCGAGAATCAC 58.683 38.462 18.75 14.58 33.17 3.06
1819 1999 7.394641 AGACATATATAAGGTGCTCGAGAATCA 59.605 37.037 18.75 1.12 33.17 2.57
1826 2006 8.182881 GGTAAGTAGACATATATAAGGTGCTCG 58.817 40.741 0.00 0.00 0.00 5.03
1994 2174 1.153005 GCAGGGGAGCTTGATCAGG 60.153 63.158 0.00 0.00 0.00 3.86
2058 2242 2.022129 GACCTGCGACGAACACCAG 61.022 63.158 0.00 0.00 0.00 4.00
2159 2343 7.765695 TGAGCACTAAAAATTCTCAAGGATT 57.234 32.000 0.00 0.00 31.62 3.01
2160 2344 7.630082 GCATGAGCACTAAAAATTCTCAAGGAT 60.630 37.037 0.00 0.00 41.58 3.24
2161 2345 6.349611 GCATGAGCACTAAAAATTCTCAAGGA 60.350 38.462 0.00 0.00 41.58 3.36
2162 2346 5.803967 GCATGAGCACTAAAAATTCTCAAGG 59.196 40.000 0.00 0.00 41.58 3.61
2163 2347 6.618811 AGCATGAGCACTAAAAATTCTCAAG 58.381 36.000 0.00 0.00 45.49 3.02
2165 2349 6.432162 AGAAGCATGAGCACTAAAAATTCTCA 59.568 34.615 0.00 0.00 45.49 3.27
2166 2350 6.850555 AGAAGCATGAGCACTAAAAATTCTC 58.149 36.000 0.00 0.00 45.49 2.87
2194 2378 3.893720 AGAACGCAAAGAATTTCAGCAG 58.106 40.909 0.00 0.62 35.03 4.24
2198 2382 5.034152 GTGACAAGAACGCAAAGAATTTCA 58.966 37.500 0.00 0.00 35.03 2.69
2286 2470 1.000396 ATGCCCTTGGGAAGCTGAC 60.000 57.895 10.36 0.00 0.00 3.51
2290 2474 2.054453 GTGGATGCCCTTGGGAAGC 61.054 63.158 10.36 0.65 0.00 3.86
2333 2517 1.447838 CACTAGCACGGCGAACCAT 60.448 57.895 16.62 0.00 34.57 3.55
2360 2544 2.041686 GGAGAGACTGTCGACGGCT 61.042 63.158 24.25 20.45 0.00 5.52
2451 2650 2.496899 TTTCCCCAGACTCATGAAGC 57.503 50.000 0.00 0.00 0.00 3.86
2453 2652 6.077322 AGAAAATTTTCCCCAGACTCATGAA 58.923 36.000 24.01 0.00 37.92 2.57
2619 2818 8.710239 ACCATATACCACTGATTACACAATGTA 58.290 33.333 0.00 0.00 0.00 2.29
2666 2868 5.616866 CGTCTGAACATGAAAACCATACACC 60.617 44.000 0.00 0.00 33.31 4.16
2780 2983 6.295011 GCAGCTAGTATCATACATGAAGAGGT 60.295 42.308 0.00 0.00 40.69 3.85
2902 3107 3.074369 TTCATCGCGCCTCCCAGA 61.074 61.111 0.00 0.00 0.00 3.86
2933 3138 0.965866 TCAGGGTGATCGAAGACGCT 60.966 55.000 10.01 10.01 42.51 5.07
2948 3153 1.211457 AGGCAGGCTTCTATGTTCAGG 59.789 52.381 0.00 0.00 0.00 3.86
2967 3172 1.651138 CGTCGAAAGTAGAAGCAGCAG 59.349 52.381 0.00 0.00 0.00 4.24
3023 3228 7.092846 ACTCCATGTACAGTTTTATCTAGGCTT 60.093 37.037 0.33 0.00 0.00 4.35
3034 3239 9.959721 AATTACTATGAACTCCATGTACAGTTT 57.040 29.630 0.33 0.00 36.71 2.66
3054 3259 4.081642 ACATGACACGGTGCTAGAATTACT 60.082 41.667 8.30 0.00 0.00 2.24
3206 3415 2.462723 TGGATCAGGAACGTGGTCATA 58.537 47.619 9.41 0.00 0.00 2.15
3261 3470 1.568504 TCCCTGGAGCGTCAATAAGT 58.431 50.000 0.00 0.00 0.00 2.24
3262 3471 2.103094 TGATCCCTGGAGCGTCAATAAG 59.897 50.000 0.00 0.00 32.52 1.73
3269 3478 1.305297 TCAGTGATCCCTGGAGCGT 60.305 57.895 5.30 0.00 32.52 5.07
3278 3487 1.728971 CAACAACGAGCTCAGTGATCC 59.271 52.381 15.40 0.00 0.00 3.36
3351 3583 3.151958 AATGTCGCGAGGATCCCCG 62.152 63.158 10.24 11.94 37.58 5.73
3367 3599 1.091771 CAAGGCTCGGCGTCATGAAT 61.092 55.000 6.85 0.00 0.00 2.57
3448 3680 4.148825 ATGACGACTGCCGCTCCC 62.149 66.667 0.00 0.00 43.32 4.30
3451 3683 1.313091 TGTAGATGACGACTGCCGCT 61.313 55.000 0.00 0.00 43.32 5.52
3463 3695 1.119684 TGGACCCGGTCATGTAGATG 58.880 55.000 19.43 0.00 33.68 2.90
3464 3696 1.971357 GATGGACCCGGTCATGTAGAT 59.029 52.381 19.43 1.20 33.68 1.98
3470 3702 1.676678 CGTGAGATGGACCCGGTCAT 61.677 60.000 19.43 10.50 33.68 3.06
3472 3704 2.348888 ACGTGAGATGGACCCGGTC 61.349 63.158 9.30 9.30 0.00 4.79
3478 3710 1.153549 GCCTCCACGTGAGATGGAC 60.154 63.158 19.30 6.06 44.42 4.02
3537 3769 2.202743 CGGCGGAAATGCTCTCGA 60.203 61.111 0.00 0.00 34.52 4.04
3556 3788 0.792640 AGACTGTTGCATTTCTCGCG 59.207 50.000 0.00 0.00 0.00 5.87
3557 3789 1.727213 GCAGACTGTTGCATTTCTCGC 60.727 52.381 3.99 0.00 43.53 5.03
3558 3790 1.802960 AGCAGACTGTTGCATTTCTCG 59.197 47.619 3.99 0.00 46.47 4.04
3559 3791 3.911661 AAGCAGACTGTTGCATTTCTC 57.088 42.857 3.99 0.00 46.47 2.87
3561 3793 3.968649 TCAAAGCAGACTGTTGCATTTC 58.031 40.909 3.99 0.00 46.47 2.17
3562 3794 4.553323 GATCAAAGCAGACTGTTGCATTT 58.447 39.130 3.99 9.98 46.47 2.32
3563 3795 3.365666 CGATCAAAGCAGACTGTTGCATT 60.366 43.478 3.99 8.06 46.47 3.56
3564 3796 2.161012 CGATCAAAGCAGACTGTTGCAT 59.839 45.455 3.99 3.34 46.47 3.96
3565 3797 1.532437 CGATCAAAGCAGACTGTTGCA 59.468 47.619 3.99 0.00 46.47 4.08
3566 3798 1.800586 TCGATCAAAGCAGACTGTTGC 59.199 47.619 3.99 6.79 44.41 4.17
3568 3800 5.695851 AAAATCGATCAAAGCAGACTGTT 57.304 34.783 0.00 0.00 0.00 3.16
3569 3801 5.695851 AAAAATCGATCAAAGCAGACTGT 57.304 34.783 0.00 0.00 0.00 3.55
3640 3873 4.127744 GCCATGTGCCCCAGCCTA 62.128 66.667 0.00 0.00 38.69 3.93
3712 3945 3.918220 GTCGCGCCGATCAGCTTG 61.918 66.667 0.00 0.00 38.42 4.01
3799 4032 3.018973 GCGACAGCACCAAAACGA 58.981 55.556 0.00 0.00 44.35 3.85
3869 4102 2.601367 CTGGGTGGGGTTTGCCAG 60.601 66.667 0.00 0.00 36.17 4.85
3878 4111 1.531365 TTTTCAGCTGCTGGGTGGG 60.531 57.895 27.79 2.83 43.01 4.61
3889 4122 0.586802 ACGGAAAGAGCGTTTTCAGC 59.413 50.000 14.93 2.00 38.51 4.26
3919 4152 0.111089 GAAACTGCTTGTCACTCGCG 60.111 55.000 0.00 0.00 0.00 5.87
3925 4158 0.808060 TCGTGCGAAACTGCTTGTCA 60.808 50.000 0.00 0.00 35.36 3.58
3941 4174 1.337821 GTCAAGAAATCGCGACTCGT 58.662 50.000 12.93 6.82 39.67 4.18
3942 4175 0.640768 GGTCAAGAAATCGCGACTCG 59.359 55.000 12.93 0.00 40.15 4.18
3943 4176 1.000145 GGGTCAAGAAATCGCGACTC 59.000 55.000 12.93 11.84 0.00 3.36
3944 4177 0.608640 AGGGTCAAGAAATCGCGACT 59.391 50.000 12.93 0.00 0.00 4.18
3978 4211 1.282930 GGAAGTGCCGACGTCTTGTC 61.283 60.000 14.70 1.98 44.53 3.18
4022 4255 5.573296 TGCAAAATTTGTGTAAAGCATCG 57.427 34.783 7.60 0.00 0.00 3.84
4061 4294 7.718753 AGGTTCTCTCATGGAAATATTCATCAC 59.281 37.037 0.00 0.00 0.00 3.06
4068 4301 6.545298 GCAAAGAGGTTCTCTCATGGAAATAT 59.455 38.462 0.00 0.00 44.81 1.28
4140 4381 4.201990 GCATCTGGAAACTTGCTGGATAAG 60.202 45.833 0.00 0.00 32.41 1.73
4146 4387 5.355071 TGTTATAGCATCTGGAAACTTGCTG 59.645 40.000 6.53 0.00 44.65 4.41
4151 4392 6.151144 GGTTGTTGTTATAGCATCTGGAAACT 59.849 38.462 0.00 0.00 0.00 2.66
4175 4416 9.526713 CCTCAAAGATCGATGTATATTCTATGG 57.473 37.037 0.54 0.00 0.00 2.74
4180 4421 8.818141 TGTTCCTCAAAGATCGATGTATATTC 57.182 34.615 0.54 0.00 0.00 1.75
4195 4673 6.479006 AGAGAATGTGATCATGTTCCTCAAA 58.521 36.000 15.40 0.00 34.19 2.69
4197 4675 5.688814 AGAGAATGTGATCATGTTCCTCA 57.311 39.130 15.40 1.79 34.19 3.86
4198 4676 8.674263 ATTTAGAGAATGTGATCATGTTCCTC 57.326 34.615 15.40 11.12 34.19 3.71
4199 4677 8.492782 AGATTTAGAGAATGTGATCATGTTCCT 58.507 33.333 15.40 14.23 34.19 3.36
4313 4794 9.980780 GCAAAGCAAGAGTAAAATTTTGTTAAA 57.019 25.926 13.76 0.00 0.00 1.52
4314 4795 9.155975 TGCAAAGCAAGAGTAAAATTTTGTTAA 57.844 25.926 13.76 0.00 34.76 2.01
4316 4797 7.413988 GGTGCAAAGCAAGAGTAAAATTTTGTT 60.414 33.333 13.76 1.35 41.47 2.83
4326 4807 1.604604 GGTGGTGCAAAGCAAGAGTA 58.395 50.000 0.00 0.00 41.47 2.59
4327 4808 1.109323 GGGTGGTGCAAAGCAAGAGT 61.109 55.000 0.00 0.00 41.47 3.24
4328 4809 1.108727 TGGGTGGTGCAAAGCAAGAG 61.109 55.000 0.00 0.00 41.47 2.85
4329 4810 0.469705 ATGGGTGGTGCAAAGCAAGA 60.470 50.000 0.00 0.00 41.47 3.02
4346 4827 3.897505 AGTTTTTCTCCCCACCAAGAATG 59.102 43.478 0.00 0.00 31.89 2.67
4379 4896 3.449227 TAGCTCTGACCCGTGCGG 61.449 66.667 3.25 3.25 37.81 5.69
4382 4899 2.093106 AGTAAGTAGCTCTGACCCGTG 58.907 52.381 0.00 0.00 0.00 4.94
4391 4923 2.678836 TGAGCGTCAGAGTAAGTAGCTC 59.321 50.000 7.50 7.50 46.73 4.09
4414 4946 1.788258 TTCGTGCTGAGCTCTCAAAG 58.212 50.000 16.19 4.76 39.39 2.77
4417 4949 0.668706 GCTTTCGTGCTGAGCTCTCA 60.669 55.000 16.19 10.10 38.06 3.27
4419 4951 0.891373 TAGCTTTCGTGCTGAGCTCT 59.109 50.000 16.19 0.00 44.99 4.09
4431 4963 2.019984 CCATTCTGGGCAGTAGCTTTC 58.980 52.381 0.00 0.00 41.70 2.62
4444 4976 4.578105 GGAGCTGACCTATTTTCCATTCTG 59.422 45.833 0.00 0.00 0.00 3.02
4458 4990 0.951040 CAACGACCTTGGAGCTGACC 60.951 60.000 0.00 0.00 0.00 4.02
4474 5006 2.621526 ACGATTTGGGTTCAACTCCAAC 59.378 45.455 9.34 0.97 42.10 3.77
4514 5046 3.550275 GGTTTTGAGAAAAACTTGGCGAC 59.450 43.478 12.36 0.00 41.20 5.19
4515 5047 3.193691 TGGTTTTGAGAAAAACTTGGCGA 59.806 39.130 12.36 0.00 41.20 5.54
4590 5122 9.289782 AGCTTTAACCAAATATAGCTCTATTGG 57.710 33.333 15.19 15.19 35.99 3.16
4594 5128 9.547753 CTGAAGCTTTAACCAAATATAGCTCTA 57.452 33.333 0.00 0.00 38.65 2.43
4595 5129 8.267894 TCTGAAGCTTTAACCAAATATAGCTCT 58.732 33.333 0.00 0.00 38.65 4.09
4608 5142 4.134563 TGACCCTTGTCTGAAGCTTTAAC 58.865 43.478 0.00 0.00 42.28 2.01
4615 5149 3.189287 CCGAAAATGACCCTTGTCTGAAG 59.811 47.826 0.00 0.00 42.28 3.02
4623 5157 6.041069 TGAATGTTTAACCGAAAATGACCCTT 59.959 34.615 0.00 0.00 0.00 3.95
4635 5170 5.009210 TGACCCTCTTTTGAATGTTTAACCG 59.991 40.000 0.00 0.00 0.00 4.44
4638 5173 6.133356 ACCTGACCCTCTTTTGAATGTTTAA 58.867 36.000 0.00 0.00 0.00 1.52
4657 5192 6.015010 TCCTTGTTCTTTTTGACAAAACCTGA 60.015 34.615 12.86 8.94 0.00 3.86
4661 5196 8.338986 TGTTTTCCTTGTTCTTTTTGACAAAAC 58.661 29.630 12.86 3.41 0.00 2.43
4662 5197 8.338986 GTGTTTTCCTTGTTCTTTTTGACAAAA 58.661 29.630 9.30 9.30 0.00 2.44
4677 5212 3.127895 TCGGTTGTTCAGTGTTTTCCTTG 59.872 43.478 0.00 0.00 0.00 3.61
4732 5267 2.559998 AACGCCTTGTGTTTCTGTTG 57.440 45.000 0.00 0.00 31.91 3.33
4777 5312 7.147976 ACATAATGCCAGAAAGTTGTCTTTTC 58.852 34.615 0.00 0.00 42.99 2.29
4783 5318 8.200792 TGTAAAAACATAATGCCAGAAAGTTGT 58.799 29.630 0.00 0.00 0.00 3.32
4848 5383 7.728847 AAAATACATTTTCAAGCTTTGGTCC 57.271 32.000 0.00 0.00 35.18 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.