AutoCloner

Multiple sequence alignment - TraesCS4A01G083000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G083000	chr4A	100.000	2291	0	0	1	2291	86850051	86847761	0.000000e+00	4231
1	TraesCS4A01G083000	chr4A	85.343	1194	148	10	1120	2289	114411586	114412776	0.000000e+00	1210
2	TraesCS4A01G083000	chr4A	84.414	879	94	18	88	944	114376494	114377351	0.000000e+00	824
3	TraesCS4A01G083000	chr4A	81.742	953	132	29	26	944	670821518	670820574	0.000000e+00	758
4	TraesCS4A01G083000	chr4A	79.299	314	46	10	880	1185	556294164	556293862	3.860000e-48	202
5	TraesCS4A01G083000	chr4A	94.366	71	4	0	935	1005	114377366	114377436	2.410000e-20	110
6	TraesCS4A01G083000	chr7D	82.129	2076	297	39	270	2288	477854467	477852409	0.000000e+00	1711
7	TraesCS4A01G083000	chr7D	85.791	746	88	9	29	767	506166082	506166816	0.000000e+00	774
8	TraesCS4A01G083000	chr3B	82.237	2083	274	39	264	2288	445896756	445898800	0.000000e+00	1709
9	TraesCS4A01G083000	chr3B	84.112	1649	210	27	669	2269	269151450	269149806	0.000000e+00	1546
10	TraesCS4A01G083000	chr4B	88.473	1388	124	14	925	2286	465031100	465032477	0.000000e+00	1644
11	TraesCS4A01G083000	chr4B	88.807	679	65	7	1	672	465030180	465030854	0.000000e+00	822
12	TraesCS4A01G083000	chr4B	76.255	1613	290	55	29	1564	581852346	581850750	0.000000e+00	771
13	TraesCS4A01G083000	chr1D	79.991	2299	367	56	56	2271	316208884	316211172	0.000000e+00	1611
14	TraesCS4A01G083000	chr4D	85.024	1636	179	31	490	2063	350825084	350823453	0.000000e+00	1604
15	TraesCS4A01G083000	chr4D	80.825	2060	322	41	271	2271	64338101	64336056	0.000000e+00	1548
16	TraesCS4A01G083000	chr4D	79.336	2318	388	53	31	2271	455708817	455711120	0.000000e+00	1543
17	TraesCS4A01G083000	chr5D	80.553	2062	314	47	271	2271	350218098	350216063	0.000000e+00	1506
18	TraesCS4A01G083000	chr5D	88.319	839	83	5	29	860	490784595	490785425	0.000000e+00	992
19	TraesCS4A01G083000	chr5D	84.137	996	150	7	1300	2289	184733653	184732660	0.000000e+00	957
20	TraesCS4A01G083000	chr1B	80.647	2041	306	48	270	2254	594142054	594144061	0.000000e+00	1498
21	TraesCS4A01G083000	chr1B	79.565	1840	321	28	430	2218	474753594	474751759	0.000000e+00	1264
22	TraesCS4A01G083000	chr3A	81.492	1837	286	34	428	2223	245629062	245627239	0.000000e+00	1459
23	TraesCS4A01G083000	chr3A	79.078	1496	232	44	56	1477	206629731	206631219	0.000000e+00	953
24	TraesCS4A01G083000	chr2A	79.909	1752	284	32	428	2118	293853499	293851755	0.000000e+00	1223
25	TraesCS4A01G083000	chr5B	85.195	1128	126	9	27	1124	605324571	605325687	0.000000e+00	1120
26	TraesCS4A01G083000	chr7A	85.263	665	86	8	109	767	573783647	573784305	0.000000e+00	675
27	TraesCS4A01G083000	chr7B	81.795	791	98	18	737	1483	184307364	184308152	2.500000e-174	621
28	TraesCS4A01G083000	chr2D	89.137	313	32	2	27	338	651030846	651030535	2.760000e-104	388
29	TraesCS4A01G083000	chr2D	89.399	283	29	1	57	338	651040654	651040372	2.800000e-94	355
30	TraesCS4A01G083000	chr6D	85.260	346	22	13	137	477	262432307	262432628	1.700000e-86	329
31	TraesCS4A01G083000	chr6A	82.548	361	34	18	137	477	322699813	322699462	8.010000e-75	291
32	TraesCS4A01G083000	chr6B	85.321	218	28	4	25	241	311555955	311555741	2.960000e-54	222

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G083000	chr4A	86847761	86850051	2290	True	4231	4231	100.000	1	2291	1	chr4A.!!$R1	2290
1	TraesCS4A01G083000	chr4A	114411586	114412776	1190	False	1210	1210	85.343	1120	2289	1	chr4A.!!$F1	1169
2	TraesCS4A01G083000	chr4A	670820574	670821518	944	True	758	758	81.742	26	944	1	chr4A.!!$R3	918
3	TraesCS4A01G083000	chr4A	114376494	114377436	942	False	467	824	89.390	88	1005	2	chr4A.!!$F2	917
4	TraesCS4A01G083000	chr7D	477852409	477854467	2058	True	1711	1711	82.129	270	2288	1	chr7D.!!$R1	2018
5	TraesCS4A01G083000	chr7D	506166082	506166816	734	False	774	774	85.791	29	767	1	chr7D.!!$F1	738
6	TraesCS4A01G083000	chr3B	445896756	445898800	2044	False	1709	1709	82.237	264	2288	1	chr3B.!!$F1	2024
7	TraesCS4A01G083000	chr3B	269149806	269151450	1644	True	1546	1546	84.112	669	2269	1	chr3B.!!$R1	1600
8	TraesCS4A01G083000	chr4B	465030180	465032477	2297	False	1233	1644	88.640	1	2286	2	chr4B.!!$F1	2285
9	TraesCS4A01G083000	chr4B	581850750	581852346	1596	True	771	771	76.255	29	1564	1	chr4B.!!$R1	1535
10	TraesCS4A01G083000	chr1D	316208884	316211172	2288	False	1611	1611	79.991	56	2271	1	chr1D.!!$F1	2215
11	TraesCS4A01G083000	chr4D	350823453	350825084	1631	True	1604	1604	85.024	490	2063	1	chr4D.!!$R2	1573
12	TraesCS4A01G083000	chr4D	64336056	64338101	2045	True	1548	1548	80.825	271	2271	1	chr4D.!!$R1	2000
13	TraesCS4A01G083000	chr4D	455708817	455711120	2303	False	1543	1543	79.336	31	2271	1	chr4D.!!$F1	2240
14	TraesCS4A01G083000	chr5D	350216063	350218098	2035	True	1506	1506	80.553	271	2271	1	chr5D.!!$R2	2000
15	TraesCS4A01G083000	chr5D	490784595	490785425	830	False	992	992	88.319	29	860	1	chr5D.!!$F1	831
16	TraesCS4A01G083000	chr5D	184732660	184733653	993	True	957	957	84.137	1300	2289	1	chr5D.!!$R1	989
17	TraesCS4A01G083000	chr1B	594142054	594144061	2007	False	1498	1498	80.647	270	2254	1	chr1B.!!$F1	1984
18	TraesCS4A01G083000	chr1B	474751759	474753594	1835	True	1264	1264	79.565	430	2218	1	chr1B.!!$R1	1788
19	TraesCS4A01G083000	chr3A	245627239	245629062	1823	True	1459	1459	81.492	428	2223	1	chr3A.!!$R1	1795
20	TraesCS4A01G083000	chr3A	206629731	206631219	1488	False	953	953	79.078	56	1477	1	chr3A.!!$F1	1421
21	TraesCS4A01G083000	chr2A	293851755	293853499	1744	True	1223	1223	79.909	428	2118	1	chr2A.!!$R1	1690
22	TraesCS4A01G083000	chr5B	605324571	605325687	1116	False	1120	1120	85.195	27	1124	1	chr5B.!!$F1	1097
23	TraesCS4A01G083000	chr7A	573783647	573784305	658	False	675	675	85.263	109	767	1	chr7A.!!$F1	658
24	TraesCS4A01G083000	chr7B	184307364	184308152	788	False	621	621	81.795	737	1483	1	chr7B.!!$F1	746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
135	137	0.030603	ATCTTCTCTGGTCCCCTCCC	60.031	60.0	0.0	0.0	0.0	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1902	2225	0.183492	TTGCAACCAAGAGAGTGCCT	59.817	50.0	0.0	0.0	0.0	4.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	0.321653	ATGTCGCCCACTGTTTCCTC	60.322	55.000	0.00	0.00	0.00	3.71
36	37	2.682856	CTGTTTCCTCTCTCTCTCTCCG	59.317	54.545	0.00	0.00	0.00	4.63
40	41	0.106719	CCTCTCTCTCTCTCCGCCTT	60.107	60.000	0.00	0.00	0.00	4.35
46	47	2.028930	TCTCTCTCTCCGCCTTTCAAAC	60.029	50.000	0.00	0.00	0.00	2.93
54	55	1.244019	CGCCTTTCAAACCCCTCCTG	61.244	60.000	0.00	0.00	0.00	3.86
62	63	3.537337	TCAAACCCCTCCTGAAATCCTA	58.463	45.455	0.00	0.00	0.00	2.94
65	66	3.151542	ACCCCTCCTGAAATCCTACAT	57.848	47.619	0.00	0.00	0.00	2.29
68	69	5.989717	ACCCCTCCTGAAATCCTACATATA	58.010	41.667	0.00	0.00	0.00	0.86
126	128	4.033709	TCCCTCAAGGTAATCTTCTCTGG	58.966	47.826	0.00	0.00	36.75	3.86
135	137	0.030603	ATCTTCTCTGGTCCCCTCCC	60.031	60.000	0.00	0.00	0.00	4.30
183	188	5.152623	TGCTCAAGTCTTGCAAGTATAGT	57.847	39.130	25.19	7.23	33.48	2.12
328	562	3.226777	TGGTTCTTGTTATGTTGGGGTG	58.773	45.455	0.00	0.00	0.00	4.61
358	599	9.321562	GTTATTGTTCGATTTCTATGTTAGGGA	57.678	33.333	0.00	0.00	0.00	4.20
359	600	7.787725	ATTGTTCGATTTCTATGTTAGGGAC	57.212	36.000	0.00	0.00	0.00	4.46
397	638	8.547967	TGTGACTAGGATTTTGTGTTAATCTC	57.452	34.615	0.00	0.00	33.51	2.75
511	758	7.495606	GGATACCTTTTTGAAAGGCAATATTGG	59.504	37.037	17.02	0.00	41.10	3.16
536	783	0.321653	AACCCGGATGAGCTTGACAC	60.322	55.000	0.73	0.00	0.00	3.67
539	786	2.456119	CGGATGAGCTTGACACGGC	61.456	63.158	0.00	0.00	0.00	5.68
547	794	1.772063	GCTTGACACGGCGTTTGAGT	61.772	55.000	11.19	4.78	0.00	3.41
567	814	5.482526	TGAGTGTAGTCCTAACTATGCCAAA	59.517	40.000	0.00	0.00	40.08	3.28
607	854	8.060689	TGAGGAAAGATTTGAATTGGATGGATA	58.939	33.333	0.00	0.00	0.00	2.59
608	855	8.843308	AGGAAAGATTTGAATTGGATGGATAA	57.157	30.769	0.00	0.00	0.00	1.75
637	884	1.518367	TGTTGAGTTGGAGGGAAGGT	58.482	50.000	0.00	0.00	0.00	3.50
638	885	1.142870	TGTTGAGTTGGAGGGAAGGTG	59.857	52.381	0.00	0.00	0.00	4.00
869	1122	8.566260	CCAAGATGAAATGAATGAACCTCTATC	58.434	37.037	0.00	0.00	0.00	2.08
989	1275	8.256605	TGTTGGTGATTTGGACAAATATTATGG	58.743	33.333	10.02	0.00	40.77	2.74
1023	1309	1.760613	GACCATTCCATCCCGTACTCA	59.239	52.381	0.00	0.00	0.00	3.41
1076	1362	2.096496	GCGTGGATGAAGAAGTTGATGG	59.904	50.000	0.00	0.00	0.00	3.51
1082	1369	2.631384	TGAAGAAGTTGATGGGGAGGA	58.369	47.619	0.00	0.00	0.00	3.71
1117	1404	3.555168	GGAGGTCGAAGCTTTCAAGAAGA	60.555	47.826	0.00	0.00	0.00	2.87
1118	1405	3.394719	AGGTCGAAGCTTTCAAGAAGAC	58.605	45.455	0.00	2.56	0.00	3.01
1164	1451	5.738909	ACATTGTTCCAGGATCTTAGTCTG	58.261	41.667	0.00	0.00	0.00	3.51
1191	1478	2.033448	GCCGTGGTTGATGGTGGA	59.967	61.111	0.00	0.00	32.49	4.02
1281	1569	2.147958	CCGGATCAAAGTTCGAAACCA	58.852	47.619	0.00	0.00	0.00	3.67
1285	1573	4.201724	CGGATCAAAGTTCGAAACCATCTC	60.202	45.833	0.00	0.00	0.00	2.75
1336	1643	0.834612	ACAAGGTGGTTCACTCGGAA	59.165	50.000	0.00	0.00	34.40	4.30
1371	1684	1.172180	ACGTTTGCATGTGTGGAGGG	61.172	55.000	0.00	0.00	0.00	4.30
1404	1717	2.689471	GGATTGTGCATGCAAGACCATA	59.311	45.455	24.58	7.53	32.82	2.74
1469	1782	0.250234	CATGTGCCGAGGGAAGAAGA	59.750	55.000	0.00	0.00	0.00	2.87
1502	1815	1.208706	TGTGTCCCAAGACCACAGAA	58.791	50.000	0.00	0.00	42.81	3.02
1554	1867	3.652057	TTCCAAATCCATCTCCTCACC	57.348	47.619	0.00	0.00	0.00	4.02
1591	1904	5.692115	TTAAGAGCATCATGGACCTTGTA	57.308	39.130	7.22	0.00	37.82	2.41
1610	1923	4.648651	TGTAAAAGCCCTCTTTCACTACC	58.351	43.478	0.00	0.00	41.40	3.18
1628	1949	4.844655	ACTACCAGGTGAAATACAGGAAGT	59.155	41.667	0.76	0.00	32.25	3.01
1729	2051	5.093236	TGGGATCTATGACCTCCACTAAT	57.907	43.478	0.00	0.00	0.00	1.73
1902	2225	3.243367	CCTTCTTGACCGCACAATTCAAA	60.243	43.478	0.00	0.00	0.00	2.69
1927	2250	2.025887	ACTCTCTTGGTTGCAATAGGGG	60.026	50.000	0.59	0.00	0.00	4.79
1932	2255	3.011144	TCTTGGTTGCAATAGGGGATGAA	59.989	43.478	0.59	0.00	0.00	2.57
1958	2281	4.597032	CCAGTTGGTGCCTTTGGA	57.403	55.556	0.00	0.00	0.00	3.53
1991	2314	5.044919	TGGTTGAGGTGGAGAACAATGATAT	60.045	40.000	0.00	0.00	0.00	1.63
2001	2324	5.070981	GGAGAACAATGATATCTGGGAGTGA	59.929	44.000	3.98	0.00	0.00	3.41
2103	2429	1.720805	CGATGGACGTTGACATTCCA	58.279	50.000	0.00	4.00	43.60	3.53
2126	2452	1.477700	GCATGCTCCTTTGCACCATTA	59.522	47.619	11.37	0.00	46.33	1.90
2197	2525	3.533606	AGGAGTTGACCGATGATCTTG	57.466	47.619	0.00	0.00	34.73	3.02
2258	2586	6.127196	ACAAACTTGTACAACCAATTGGTCAT	60.127	34.615	29.91	21.92	43.49	3.06
2289	2617	0.770499	TCAATGCAGGGGTCTTGACA	59.230	50.000	3.08	0.00	0.00	3.58
2290	2618	1.355381	TCAATGCAGGGGTCTTGACAT	59.645	47.619	3.08	0.00	0.00	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	0.832135	AGAGAGGAAACAGTGGGCGA	60.832	55.000	0.00	0.00	0.00	5.54
10	11	0.980423	AGAGAGAGGAAACAGTGGGC	59.020	55.000	0.00	0.00	0.00	5.36
14	15	3.697166	GGAGAGAGAGAGAGGAAACAGT	58.303	50.000	0.00	0.00	0.00	3.55
15	16	2.682856	CGGAGAGAGAGAGAGGAAACAG	59.317	54.545	0.00	0.00	0.00	3.16
24	25	1.468985	TGAAAGGCGGAGAGAGAGAG	58.531	55.000	0.00	0.00	0.00	3.20
36	37	0.112412	TCAGGAGGGGTTTGAAAGGC	59.888	55.000	0.00	0.00	0.00	4.35
40	41	2.721906	AGGATTTCAGGAGGGGTTTGAA	59.278	45.455	0.00	0.00	0.00	2.69
46	47	6.673978	TCATATATGTAGGATTTCAGGAGGGG	59.326	42.308	12.42	0.00	0.00	4.79
126	128	1.002502	CGGTTGAAAGGGAGGGGAC	60.003	63.158	0.00	0.00	0.00	4.46
183	188	5.779241	ATCCATGAAGAACTAGGGTTTGA	57.221	39.130	0.00	0.00	35.58	2.69
268	332	7.672122	ACATACTAAGAACCCTAACCCTAAG	57.328	40.000	0.00	0.00	0.00	2.18
328	562	7.787725	ACATAGAAATCGAACAATAACCCTC	57.212	36.000	0.00	0.00	0.00	4.30
358	599	3.876309	AGTCACATAACCAAACCCTGT	57.124	42.857	0.00	0.00	0.00	4.00
359	600	4.019681	TCCTAGTCACATAACCAAACCCTG	60.020	45.833	0.00	0.00	0.00	4.45
444	691	1.371467	ACACATGTTCTCCCCATCCA	58.629	50.000	0.00	0.00	0.00	3.41
536	783	0.038526	AGGACTACACTCAAACGCCG	60.039	55.000	0.00	0.00	0.00	6.46
539	786	5.515626	GCATAGTTAGGACTACACTCAAACG	59.484	44.000	0.00	0.00	40.98	3.60
547	794	5.720041	AGACTTTGGCATAGTTAGGACTACA	59.280	40.000	11.91	0.00	40.98	2.74
567	814	4.164221	TCTTTCCTCACTTGTTCCAAGACT	59.836	41.667	10.73	0.00	0.00	3.24
607	854	6.209391	CCCTCCAACTCAACAATATCACTTTT	59.791	38.462	0.00	0.00	0.00	2.27
608	855	5.711976	CCCTCCAACTCAACAATATCACTTT	59.288	40.000	0.00	0.00	0.00	2.66
637	884	4.461081	GTGCATTCCAAACCCTACATTACA	59.539	41.667	0.00	0.00	0.00	2.41
638	885	4.461081	TGTGCATTCCAAACCCTACATTAC	59.539	41.667	0.00	0.00	0.00	1.89
869	1122	1.966451	GGCCTCACTTGTTGGGTCG	60.966	63.158	0.00	0.00	0.00	4.79
933	1187	6.126854	TGTCATGGAGATCAACATCATTCTCT	60.127	38.462	0.00	0.00	35.90	3.10
989	1275	1.560505	ATGGTCCATGGTTTCTTGCC	58.439	50.000	12.58	4.80	0.00	4.52
1023	1309	0.761187	ACTCCGATGCATAGCCACAT	59.239	50.000	0.00	0.00	0.00	3.21
1056	1342	2.679837	CCCATCAACTTCTTCATCCACG	59.320	50.000	0.00	0.00	0.00	4.94
1057	1343	3.019564	CCCCATCAACTTCTTCATCCAC	58.980	50.000	0.00	0.00	0.00	4.02
1058	1344	2.918934	TCCCCATCAACTTCTTCATCCA	59.081	45.455	0.00	0.00	0.00	3.41
1076	1362	2.837371	CTTCGCCGTGAACTCCTCCC	62.837	65.000	0.00	0.00	31.87	4.30
1082	1369	2.156051	GACCTCCTTCGCCGTGAACT	62.156	60.000	0.00	0.00	31.87	3.01
1117	1404	1.270305	CCGATGATCCTGCCGTAATGT	60.270	52.381	0.00	0.00	0.00	2.71
1118	1405	1.000843	TCCGATGATCCTGCCGTAATG	59.999	52.381	0.00	0.00	0.00	1.90
1164	1451	0.808755	CAACCACGGCTTTATCCACC	59.191	55.000	0.00	0.00	0.00	4.61
1191	1478	6.605995	GCCTAACTCCAACAAATATACCCTTT	59.394	38.462	0.00	0.00	0.00	3.11
1265	1553	4.566004	TCGAGATGGTTTCGAACTTTGAT	58.434	39.130	0.00	0.00	43.39	2.57
1281	1569	3.002451	CGTAACCGAGAAGTCATCGAGAT	59.998	47.826	0.00	0.00	42.76	2.75
1285	1573	1.189403	GCGTAACCGAGAAGTCATCG	58.811	55.000	0.00	0.00	39.86	3.84
1336	1643	2.973694	ACGTGTAACACACCTTGACT	57.026	45.000	8.07	0.00	45.93	3.41
1355	1662	2.267351	CGCCCTCCACACATGCAAA	61.267	57.895	0.00	0.00	0.00	3.68
1365	1678	2.366837	ATGGACATCCGCCCTCCA	60.367	61.111	0.00	0.00	38.47	3.86
1371	1684	0.664761	CACAATCCATGGACATCCGC	59.335	55.000	18.99	0.00	39.43	5.54
1404	1717	2.531942	AACCGGGCCCTCCTTTCT	60.532	61.111	22.43	0.00	0.00	2.52
1469	1782	2.762327	GGGACACAATCTTGCCATCAAT	59.238	45.455	0.00	0.00	0.00	2.57
1528	1841	5.044919	TGAGGAGATGGATTTGGAAAGCTTA	60.045	40.000	0.00	0.00	0.00	3.09
1540	1853	2.122768	GTTGGAGGTGAGGAGATGGAT	58.877	52.381	0.00	0.00	0.00	3.41
1554	1867	4.397103	TGCTCTTAATGCTCATTGTTGGAG	59.603	41.667	5.43	7.91	35.47	3.86
1591	1904	3.498661	CCTGGTAGTGAAAGAGGGCTTTT	60.499	47.826	0.00	0.00	44.10	2.27
1610	1923	4.637534	CCATGACTTCCTGTATTTCACCTG	59.362	45.833	0.00	0.00	0.00	4.00
1628	1949	1.308069	GCTTGCTTCGCCTTCCATGA	61.308	55.000	0.00	0.00	0.00	3.07
1712	2034	3.497332	CCGGATTAGTGGAGGTCATAGA	58.503	50.000	0.00	0.00	0.00	1.98
1729	2051	1.378382	CACATGAACCATGCCCGGA	60.378	57.895	0.73	0.00	44.80	5.14
1902	2225	0.183492	TTGCAACCAAGAGAGTGCCT	59.817	50.000	0.00	0.00	0.00	4.75
1927	2250	4.376340	CCAACTGGTTATTGGCTTCATC	57.624	45.455	0.00	0.00	40.25	2.92
1958	2281	3.037549	TCCACCTCAACCAAAGCAAAAT	58.962	40.909	0.00	0.00	0.00	1.82
1991	2314	3.242867	AGACACAAGAATCACTCCCAGA	58.757	45.455	0.00	0.00	0.00	3.86
2001	2324	6.183360	CCTTGGTTCTCAAAAGACACAAGAAT	60.183	38.462	14.83	0.00	42.53	2.40
2103	2429	2.441959	TGCAAAGGAGCATGCCCT	59.558	55.556	15.66	17.53	41.87	5.19
2197	2525	4.999751	AGAAAGCGAGACAACAATCTTC	57.000	40.909	0.00	0.00	0.00	2.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.