Multiple sequence alignment - TraesCS4A01G082900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G082900 chr4A 100.000 9754 0 0 1 9754 86577189 86567436 0.000000e+00 18013.0
1 TraesCS4A01G082900 chr4A 97.143 2520 67 3 3457 5976 19002970 19000456 0.000000e+00 4250.0
2 TraesCS4A01G082900 chr4A 96.151 2520 96 1 3457 5976 641307792 641305274 0.000000e+00 4115.0
3 TraesCS4A01G082900 chr4A 98.239 1760 20 6 1646 3396 584864423 584862666 0.000000e+00 3068.0
4 TraesCS4A01G082900 chr4A 89.787 235 22 2 560 793 47756870 47757103 5.730000e-77 300.0
5 TraesCS4A01G082900 chr4A 88.043 92 8 2 171 261 391378819 391378908 1.340000e-18 106.0
6 TraesCS4A01G082900 chr4A 85.000 100 13 2 1564 1662 409487163 409487261 6.230000e-17 100.0
7 TraesCS4A01G082900 chr5A 96.429 2520 88 2 3457 5976 570416586 570419103 0.000000e+00 4154.0
8 TraesCS4A01G082900 chr5A 84.259 108 13 4 1564 1668 278951597 278951491 1.730000e-17 102.0
9 TraesCS4A01G082900 chr5A 88.095 84 10 0 238 321 180971404 180971487 6.230000e-17 100.0
10 TraesCS4A01G082900 chr5A 90.566 53 5 0 401 453 108019793 108019741 4.890000e-08 71.3
11 TraesCS4A01G082900 chr1A 96.230 2520 92 3 3457 5976 261941073 261943589 0.000000e+00 4124.0
12 TraesCS4A01G082900 chr1A 96.267 2518 89 5 3457 5974 428701322 428703834 0.000000e+00 4124.0
13 TraesCS4A01G082900 chr1A 97.354 1814 35 6 5991 7793 475179873 475181684 0.000000e+00 3072.0
14 TraesCS4A01G082900 chr1A 97.727 1452 23 3 5984 7426 311082086 311080636 0.000000e+00 2490.0
15 TraesCS4A01G082900 chr1A 96.622 1036 35 0 1 1036 74625681 74624646 0.000000e+00 1720.0
16 TraesCS4A01G082900 chr1A 94.118 629 34 3 1032 1659 74613364 74612738 0.000000e+00 953.0
17 TraesCS4A01G082900 chr1A 82.692 104 14 4 1564 1664 537562985 537563087 1.350000e-13 89.8
18 TraesCS4A01G082900 chr1A 96.154 52 1 1 3383 3433 49656869 49656920 6.280000e-12 84.2
19 TraesCS4A01G082900 chr3A 96.111 2520 96 2 3457 5976 420018372 420020889 0.000000e+00 4109.0
20 TraesCS4A01G082900 chr3A 96.111 2520 95 2 3457 5976 33902315 33899799 0.000000e+00 4108.0
21 TraesCS4A01G082900 chr3A 95.992 2520 96 5 3457 5976 211385631 211383117 0.000000e+00 4089.0
22 TraesCS4A01G082900 chr3A 95.956 2522 95 6 3457 5976 700492905 700490389 0.000000e+00 4085.0
23 TraesCS4A01G082900 chr3A 98.763 1779 12 5 1663 3433 429309192 429310968 0.000000e+00 3155.0
24 TraesCS4A01G082900 chr3A 96.041 1667 61 3 1 1664 554818112 554816448 0.000000e+00 2708.0
25 TraesCS4A01G082900 chr3A 96.658 1197 35 2 5991 7183 96945893 96947088 0.000000e+00 1984.0
26 TraesCS4A01G082900 chr3A 98.571 630 7 2 7165 7793 96947723 96948351 0.000000e+00 1112.0
27 TraesCS4A01G082900 chr3A 85.449 323 33 8 7423 7744 684287023 684287332 3.400000e-84 324.0
28 TraesCS4A01G082900 chr3A 88.325 197 20 3 1 196 416633653 416633459 5.890000e-57 233.0
29 TraesCS4A01G082900 chr7A 98.781 1805 19 3 5991 7793 422567826 422566023 0.000000e+00 3208.0
30 TraesCS4A01G082900 chr7A 83.716 436 54 11 5991 6423 492881215 492880794 7.100000e-106 396.0
31 TraesCS4A01G082900 chr7A 85.139 323 34 8 7426 7747 492879597 492879288 1.580000e-82 318.0
32 TraesCS4A01G082900 chr6B 98.340 1807 25 3 5991 7793 691737422 691739227 0.000000e+00 3166.0
33 TraesCS4A01G082900 chr6B 98.019 1817 22 5 5991 7793 420859674 420857858 0.000000e+00 3144.0
34 TraesCS4A01G082900 chr6B 98.019 1716 17 6 1647 3347 691672566 691670853 0.000000e+00 2964.0
35 TraesCS4A01G082900 chr1B 97.949 1755 28 3 1676 3423 632501685 632499932 0.000000e+00 3035.0
36 TraesCS4A01G082900 chr1B 98.728 1651 14 2 1779 3423 28500503 28502152 0.000000e+00 2926.0
37 TraesCS4A01G082900 chr1B 92.440 754 42 5 6337 7079 125756318 125755569 0.000000e+00 1062.0
38 TraesCS4A01G082900 chr1B 96.172 418 14 2 7330 7747 125755103 125754688 0.000000e+00 682.0
39 TraesCS4A01G082900 chr1B 95.455 330 14 1 5991 6320 125762098 125761770 8.680000e-145 525.0
40 TraesCS4A01G082900 chr1B 92.893 197 12 2 1 196 379801951 379801756 1.600000e-72 285.0
41 TraesCS4A01G082900 chr1B 96.947 131 3 1 1651 1780 28500291 28500421 1.650000e-52 219.0
42 TraesCS4A01G082900 chr1B 96.241 133 5 0 7097 7229 125755581 125755449 1.650000e-52 219.0
43 TraesCS4A01G082900 chr1B 92.453 106 7 1 7226 7331 125755289 125755185 6.100000e-32 150.0
44 TraesCS4A01G082900 chr1B 100.000 38 0 0 3379 3416 19953158 19953121 4.890000e-08 71.3
45 TraesCS4A01G082900 chr1B 100.000 38 0 0 2802 2839 28501072 28501035 4.890000e-08 71.3
46 TraesCS4A01G082900 chr1B 100.000 38 0 0 2305 2342 28501569 28501532 4.890000e-08 71.3
47 TraesCS4A01G082900 chr1B 100.000 38 0 0 2305 2342 632500515 632500552 4.890000e-08 71.3
48 TraesCS4A01G082900 chr1B 97.143 35 1 0 6319 6353 125756366 125756332 1.060000e-04 60.2
49 TraesCS4A01G082900 chr2B 96.971 1783 16 7 1646 3418 145299555 145301309 0.000000e+00 2959.0
50 TraesCS4A01G082900 chr2B 94.118 51 2 1 3385 3435 570378992 570378943 1.050000e-09 76.8
51 TraesCS4A01G082900 chr2B 90.566 53 5 0 398 450 106699958 106700010 4.890000e-08 71.3
52 TraesCS4A01G082900 chrUn 98.804 1589 10 4 1663 3244 386973409 386971823 0.000000e+00 2820.0
53 TraesCS4A01G082900 chrUn 100.000 38 0 0 2305 2342 386972227 386972264 4.890000e-08 71.3
54 TraesCS4A01G082900 chrUn 100.000 38 0 0 2802 2839 386972723 386972760 4.890000e-08 71.3
55 TraesCS4A01G082900 chr2D 91.178 1553 121 10 8213 9754 295256495 295254948 0.000000e+00 2095.0
56 TraesCS4A01G082900 chr2D 91.620 1062 64 9 590 1651 162562883 162561847 0.000000e+00 1445.0
57 TraesCS4A01G082900 chr2D 89.930 427 31 7 7793 8212 352652824 352653245 3.100000e-149 540.0
58 TraesCS4A01G082900 chr2D 88.964 444 33 9 7781 8215 422419867 422420303 1.440000e-147 534.0
59 TraesCS4A01G082900 chr2D 90.566 53 5 0 401 453 133480927 133480875 4.890000e-08 71.3
60 TraesCS4A01G082900 chr4D 94.240 1302 72 2 367 1668 121833010 121831712 0.000000e+00 1986.0
61 TraesCS4A01G082900 chr4D 97.581 372 9 0 1 372 121842122 121841751 1.070000e-178 638.0
62 TraesCS4A01G082900 chr4D 89.953 428 32 7 7791 8212 20928229 20928651 8.620000e-150 542.0
63 TraesCS4A01G082900 chr4D 88.915 433 40 5 7781 8212 359221302 359221727 2.410000e-145 527.0
64 TraesCS4A01G082900 chr4D 89.787 235 22 2 560 793 416054959 416054726 5.730000e-77 300.0
65 TraesCS4A01G082900 chr4D 87.288 236 14 2 774 994 416054690 416054456 1.260000e-63 255.0
66 TraesCS4A01G082900 chr6D 90.897 1483 113 11 8281 9754 304257574 304256105 0.000000e+00 1971.0
67 TraesCS4A01G082900 chr6D 89.254 1554 149 15 8213 9754 388529763 388528216 0.000000e+00 1929.0
68 TraesCS4A01G082900 chr6D 87.879 1551 168 11 8213 9753 233908854 233907314 0.000000e+00 1805.0
69 TraesCS4A01G082900 chr4B 89.504 1553 148 10 8213 9754 204867670 204869218 0.000000e+00 1951.0
70 TraesCS4A01G082900 chr4B 88.781 1551 157 13 8214 9754 314917035 314918578 0.000000e+00 1884.0
71 TraesCS4A01G082900 chr4B 88.273 1552 162 12 8213 9753 322627549 322626007 0.000000e+00 1840.0
72 TraesCS4A01G082900 chr4B 86.667 450 38 4 560 994 512751557 512751115 6.850000e-131 479.0
73 TraesCS4A01G082900 chr3B 88.395 1551 165 11 8214 9754 299910512 299908967 0.000000e+00 1853.0
74 TraesCS4A01G082900 chr3B 88.163 1546 172 7 8213 9754 274298188 274296650 0.000000e+00 1831.0
75 TraesCS4A01G082900 chr5B 94.698 1094 51 5 5991 7079 283912122 283911031 0.000000e+00 1692.0
76 TraesCS4A01G082900 chr5B 94.195 913 47 4 6171 7079 18645927 18646837 0.000000e+00 1387.0
77 TraesCS4A01G082900 chr5B 95.844 385 15 1 7227 7611 18647038 18647421 1.080000e-173 621.0
78 TraesCS4A01G082900 chr5B 95.584 385 16 1 7227 7611 283910828 283910445 5.010000e-172 616.0
79 TraesCS4A01G082900 chr5B 92.701 137 4 2 7097 7229 283911043 283910909 1.000000e-44 193.0
80 TraesCS4A01G082900 chr5B 91.971 137 5 2 7097 7229 18646825 18646959 4.650000e-43 187.0
81 TraesCS4A01G082900 chr5B 97.959 49 1 0 7745 7793 18647550 18647598 1.750000e-12 86.1
82 TraesCS4A01G082900 chr5D 94.006 1001 56 4 1 999 7258127 7257129 0.000000e+00 1513.0
83 TraesCS4A01G082900 chr5D 90.520 538 45 4 1006 1537 7256713 7256176 0.000000e+00 706.0
84 TraesCS4A01G082900 chr5D 89.930 427 30 5 7792 8210 209343698 209344119 1.110000e-148 538.0
85 TraesCS4A01G082900 chr5D 89.535 430 33 7 7791 8212 28266792 28267217 1.440000e-147 534.0
86 TraesCS4A01G082900 chr5D 86.047 129 13 1 1525 1653 7255020 7254897 6.150000e-27 134.0
87 TraesCS4A01G082900 chr3D 89.977 429 28 8 7791 8212 464201153 464201573 3.100000e-149 540.0
88 TraesCS4A01G082900 chr1D 89.882 425 31 6 7793 8210 239493510 239493929 4.010000e-148 536.0
89 TraesCS4A01G082900 chr1D 97.368 38 1 0 3379 3416 13509601 13509564 2.270000e-06 65.8
90 TraesCS4A01G082900 chr6A 89.583 432 28 10 7793 8215 483597014 483596591 5.190000e-147 532.0
91 TraesCS4A01G082900 chr6A 93.878 196 10 2 1 196 297921234 297921041 2.660000e-75 294.0
92 TraesCS4A01G082900 chr6A 85.075 268 29 7 1256 1515 449935487 449935751 7.510000e-66 263.0
93 TraesCS4A01G082900 chr6A 89.655 58 4 2 401 456 374163137 374163080 1.360000e-08 73.1
94 TraesCS4A01G082900 chr7B 82.798 436 58 11 5991 6423 453203096 453202675 3.330000e-99 374.0
95 TraesCS4A01G082900 chr7B 85.449 323 33 8 7426 7747 453201502 453201193 3.400000e-84 324.0
96 TraesCS4A01G082900 chr7B 91.026 78 7 0 1582 1659 303137282 303137205 1.340000e-18 106.0
97 TraesCS4A01G082900 chr2A 87.310 197 22 3 1 196 436073935 436073741 1.280000e-53 222.0
98 TraesCS4A01G082900 chr2A 90.741 54 5 0 398 451 159083871 159083924 1.360000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G082900 chr4A 86567436 86577189 9753 True 18013.000000 18013 100.000000 1 9754 1 chr4A.!!$R2 9753
1 TraesCS4A01G082900 chr4A 19000456 19002970 2514 True 4250.000000 4250 97.143000 3457 5976 1 chr4A.!!$R1 2519
2 TraesCS4A01G082900 chr4A 641305274 641307792 2518 True 4115.000000 4115 96.151000 3457 5976 1 chr4A.!!$R4 2519
3 TraesCS4A01G082900 chr4A 584862666 584864423 1757 True 3068.000000 3068 98.239000 1646 3396 1 chr4A.!!$R3 1750
4 TraesCS4A01G082900 chr5A 570416586 570419103 2517 False 4154.000000 4154 96.429000 3457 5976 1 chr5A.!!$F2 2519
5 TraesCS4A01G082900 chr1A 261941073 261943589 2516 False 4124.000000 4124 96.230000 3457 5976 1 chr1A.!!$F2 2519
6 TraesCS4A01G082900 chr1A 428701322 428703834 2512 False 4124.000000 4124 96.267000 3457 5974 1 chr1A.!!$F3 2517
7 TraesCS4A01G082900 chr1A 475179873 475181684 1811 False 3072.000000 3072 97.354000 5991 7793 1 chr1A.!!$F4 1802
8 TraesCS4A01G082900 chr1A 311080636 311082086 1450 True 2490.000000 2490 97.727000 5984 7426 1 chr1A.!!$R3 1442
9 TraesCS4A01G082900 chr1A 74624646 74625681 1035 True 1720.000000 1720 96.622000 1 1036 1 chr1A.!!$R2 1035
10 TraesCS4A01G082900 chr1A 74612738 74613364 626 True 953.000000 953 94.118000 1032 1659 1 chr1A.!!$R1 627
11 TraesCS4A01G082900 chr3A 420018372 420020889 2517 False 4109.000000 4109 96.111000 3457 5976 1 chr3A.!!$F1 2519
12 TraesCS4A01G082900 chr3A 33899799 33902315 2516 True 4108.000000 4108 96.111000 3457 5976 1 chr3A.!!$R1 2519
13 TraesCS4A01G082900 chr3A 211383117 211385631 2514 True 4089.000000 4089 95.992000 3457 5976 1 chr3A.!!$R2 2519
14 TraesCS4A01G082900 chr3A 700490389 700492905 2516 True 4085.000000 4085 95.956000 3457 5976 1 chr3A.!!$R5 2519
15 TraesCS4A01G082900 chr3A 429309192 429310968 1776 False 3155.000000 3155 98.763000 1663 3433 1 chr3A.!!$F2 1770
16 TraesCS4A01G082900 chr3A 554816448 554818112 1664 True 2708.000000 2708 96.041000 1 1664 1 chr3A.!!$R4 1663
17 TraesCS4A01G082900 chr3A 96945893 96948351 2458 False 1548.000000 1984 97.614500 5991 7793 2 chr3A.!!$F4 1802
18 TraesCS4A01G082900 chr7A 422566023 422567826 1803 True 3208.000000 3208 98.781000 5991 7793 1 chr7A.!!$R1 1802
19 TraesCS4A01G082900 chr7A 492879288 492881215 1927 True 357.000000 396 84.427500 5991 7747 2 chr7A.!!$R2 1756
20 TraesCS4A01G082900 chr6B 691737422 691739227 1805 False 3166.000000 3166 98.340000 5991 7793 1 chr6B.!!$F1 1802
21 TraesCS4A01G082900 chr6B 420857858 420859674 1816 True 3144.000000 3144 98.019000 5991 7793 1 chr6B.!!$R1 1802
22 TraesCS4A01G082900 chr6B 691670853 691672566 1713 True 2964.000000 2964 98.019000 1647 3347 1 chr6B.!!$R2 1700
23 TraesCS4A01G082900 chr1B 632499932 632501685 1753 True 3035.000000 3035 97.949000 1676 3423 1 chr1B.!!$R4 1747
24 TraesCS4A01G082900 chr1B 28500291 28502152 1861 False 1572.500000 2926 97.837500 1651 3423 2 chr1B.!!$F2 1772
25 TraesCS4A01G082900 chr1B 125754688 125756366 1678 True 434.640000 1062 94.889800 6319 7747 5 chr1B.!!$R6 1428
26 TraesCS4A01G082900 chr2B 145299555 145301309 1754 False 2959.000000 2959 96.971000 1646 3418 1 chr2B.!!$F2 1772
27 TraesCS4A01G082900 chrUn 386971823 386973409 1586 True 2820.000000 2820 98.804000 1663 3244 1 chrUn.!!$R1 1581
28 TraesCS4A01G082900 chr2D 295254948 295256495 1547 True 2095.000000 2095 91.178000 8213 9754 1 chr2D.!!$R3 1541
29 TraesCS4A01G082900 chr2D 162561847 162562883 1036 True 1445.000000 1445 91.620000 590 1651 1 chr2D.!!$R2 1061
30 TraesCS4A01G082900 chr4D 121831712 121833010 1298 True 1986.000000 1986 94.240000 367 1668 1 chr4D.!!$R1 1301
31 TraesCS4A01G082900 chr4D 416054456 416054959 503 True 277.500000 300 88.537500 560 994 2 chr4D.!!$R3 434
32 TraesCS4A01G082900 chr6D 304256105 304257574 1469 True 1971.000000 1971 90.897000 8281 9754 1 chr6D.!!$R2 1473
33 TraesCS4A01G082900 chr6D 388528216 388529763 1547 True 1929.000000 1929 89.254000 8213 9754 1 chr6D.!!$R3 1541
34 TraesCS4A01G082900 chr6D 233907314 233908854 1540 True 1805.000000 1805 87.879000 8213 9753 1 chr6D.!!$R1 1540
35 TraesCS4A01G082900 chr4B 204867670 204869218 1548 False 1951.000000 1951 89.504000 8213 9754 1 chr4B.!!$F1 1541
36 TraesCS4A01G082900 chr4B 314917035 314918578 1543 False 1884.000000 1884 88.781000 8214 9754 1 chr4B.!!$F2 1540
37 TraesCS4A01G082900 chr4B 322626007 322627549 1542 True 1840.000000 1840 88.273000 8213 9753 1 chr4B.!!$R1 1540
38 TraesCS4A01G082900 chr3B 299908967 299910512 1545 True 1853.000000 1853 88.395000 8214 9754 1 chr3B.!!$R2 1540
39 TraesCS4A01G082900 chr3B 274296650 274298188 1538 True 1831.000000 1831 88.163000 8213 9754 1 chr3B.!!$R1 1541
40 TraesCS4A01G082900 chr5B 283910445 283912122 1677 True 833.666667 1692 94.327667 5991 7611 3 chr5B.!!$R1 1620
41 TraesCS4A01G082900 chr5B 18645927 18647598 1671 False 570.275000 1387 94.992250 6171 7793 4 chr5B.!!$F1 1622
42 TraesCS4A01G082900 chr5D 7254897 7258127 3230 True 784.333333 1513 90.191000 1 1653 3 chr5D.!!$R1 1652
43 TraesCS4A01G082900 chr7B 453201193 453203096 1903 True 349.000000 374 84.123500 5991 7747 2 chr7B.!!$R2 1756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 387 0.322546 TCTACTCCACTCGCAGCTGA 60.323 55.000 20.43 0.00 0.00 4.26 F
969 1042 0.541392 ATAGCATGGTCGGCTTGTGA 59.459 50.000 0.00 0.00 42.62 3.58 F
1053 1535 1.709147 GAAGCCAGCAACGCGATGAT 61.709 55.000 21.39 11.66 0.00 2.45 F
1435 1930 3.083997 GGGATCTGGTGACCGGCT 61.084 66.667 5.33 0.00 0.00 5.52 F
2161 3921 4.401202 CACCACTTTTTACAGGTCCACTTT 59.599 41.667 0.00 0.00 30.44 2.66 F
2497 4257 4.517832 GGTTCGGACTGGTTTTTGATACTT 59.482 41.667 0.00 0.00 0.00 2.24 F
3423 5186 5.425862 GGGAGTACAAAAGAGGAGTCCTATT 59.574 44.000 12.99 13.25 36.55 1.73 F
3453 5216 0.249741 AAGACCGTGTTCACTTCCCG 60.250 55.000 1.53 0.00 0.00 5.14 F
4821 6586 0.179468 GCTATAAGTTCGGGGTGCCA 59.821 55.000 0.00 0.00 0.00 4.92 F
5407 7174 1.519234 CATTGCTACGCCTGCTCGA 60.519 57.895 1.02 0.00 0.00 4.04 F
5656 7423 0.039527 GAATTTGGCGAGTGCGGTTT 60.040 50.000 0.00 0.00 44.10 3.27 F
6179 7947 0.165079 CGTGAAAAACCCCATCGTCG 59.835 55.000 0.00 0.00 0.00 5.12 F
7868 11089 0.035439 CCACAGTTTATGCCTCCGGT 60.035 55.000 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1195 1677 2.031012 CAGTCGCTGGTGCCTTGA 59.969 61.111 0.00 0.00 35.36 3.02 R
1894 3642 2.354704 CCTGGCCGAGAGTTTCAACATA 60.355 50.000 0.00 0.00 0.00 2.29 R
1970 3718 2.646175 CCGTCACCGTCTCCATGGT 61.646 63.158 12.58 0.00 43.46 3.55 R
3434 5197 0.249741 CGGGAAGTGAACACGGTCTT 60.250 55.000 9.97 0.00 36.20 3.01 R
3441 5204 0.107831 CCTTGTCCGGGAAGTGAACA 59.892 55.000 0.00 0.00 0.00 3.18 R
3443 5206 0.107831 CACCTTGTCCGGGAAGTGAA 59.892 55.000 0.00 0.00 0.00 3.18 R
4290 6053 1.429825 CGACGACTCGCCATCTCTT 59.570 57.895 0.00 0.00 31.91 2.85 R
5407 7174 1.822186 AAGACCGCTTGGCACGTTT 60.822 52.632 0.00 0.00 35.53 3.60 R
5656 7423 0.823460 TATCATGCACTGCTCGGACA 59.177 50.000 1.98 0.00 0.00 4.02 R
6709 8522 4.530710 TGCTAACTACGATGGAGTTGTT 57.469 40.909 4.68 0.42 41.44 2.83 R
6964 8781 7.210174 TGGCATGAAGTATATCTTGTACAGAC 58.790 38.462 0.00 0.00 36.40 3.51 R
8064 11285 0.025001 GACAACGCGGTTGATCGATG 59.975 55.000 22.26 5.41 45.28 3.84 R
9504 12742 0.324460 TGATTGGCATGGCATGGACA 60.324 50.000 27.48 16.49 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
265 267 4.899457 TGAACTTCAGTCCTCCTCAAACTA 59.101 41.667 0.00 0.00 0.00 2.24
350 352 5.532779 TGTGCACAAATAAGTAATGGACACA 59.467 36.000 19.28 0.00 36.80 3.72
385 387 0.322546 TCTACTCCACTCGCAGCTGA 60.323 55.000 20.43 0.00 0.00 4.26
488 490 7.493367 AGCATCAACTCCTCTATACAGTAAAC 58.507 38.462 0.00 0.00 0.00 2.01
562 565 2.441750 TCTTGTGTTAGGCCCAGAGTTT 59.558 45.455 0.00 0.00 0.00 2.66
571 574 1.344114 GGCCCAGAGTTTGCAAATCAA 59.656 47.619 16.21 0.00 0.00 2.57
716 719 2.816337 GCTGTTAACCCAAAGCCACCTA 60.816 50.000 2.48 0.00 0.00 3.08
813 871 5.163632 GCCACTACTCTTCTGTACTTCTACC 60.164 48.000 0.00 0.00 0.00 3.18
969 1042 0.541392 ATAGCATGGTCGGCTTGTGA 59.459 50.000 0.00 0.00 42.62 3.58
1053 1535 1.709147 GAAGCCAGCAACGCGATGAT 61.709 55.000 21.39 11.66 0.00 2.45
1066 1548 4.433615 ACGCGATGATGTTCAGATTAGTT 58.566 39.130 15.93 0.00 0.00 2.24
1424 1916 3.474570 GGCGGCTCTGTGGGATCT 61.475 66.667 0.00 0.00 0.00 2.75
1435 1930 3.083997 GGGATCTGGTGACCGGCT 61.084 66.667 5.33 0.00 0.00 5.52
1623 3286 8.840321 CGTGATCCAAATAGTTATTTTGATCCT 58.160 33.333 22.72 4.32 45.14 3.24
1624 3287 9.956720 GTGATCCAAATAGTTATTTTGATCCTG 57.043 33.333 22.72 4.44 45.14 3.86
1894 3642 5.721232 ACTCACTTTGTTTAGCTAGCGTAT 58.279 37.500 9.55 0.00 0.00 3.06
1970 3718 4.794439 CCACAGCGCCATCGACGA 62.794 66.667 2.29 0.00 38.10 4.20
2161 3921 4.401202 CACCACTTTTTACAGGTCCACTTT 59.599 41.667 0.00 0.00 30.44 2.66
2497 4257 4.517832 GGTTCGGACTGGTTTTTGATACTT 59.482 41.667 0.00 0.00 0.00 2.24
3423 5186 5.425862 GGGAGTACAAAAGAGGAGTCCTATT 59.574 44.000 12.99 13.25 36.55 1.73
3424 5187 6.610425 GGGAGTACAAAAGAGGAGTCCTATTA 59.390 42.308 19.23 0.96 33.58 0.98
3425 5188 7.290481 GGGAGTACAAAAGAGGAGTCCTATTAT 59.710 40.741 19.23 10.58 33.58 1.28
3426 5189 9.364653 GGAGTACAAAAGAGGAGTCCTATTATA 57.635 37.037 19.23 9.66 33.58 0.98
3450 5213 9.909644 ATATATATACAAGACCGTGTTCACTTC 57.090 33.333 0.00 0.00 32.75 3.01
3451 5214 1.949465 ACAAGACCGTGTTCACTTCC 58.051 50.000 1.53 0.00 0.00 3.46
3452 5215 1.226746 CAAGACCGTGTTCACTTCCC 58.773 55.000 1.53 0.00 0.00 3.97
3453 5216 0.249741 AAGACCGTGTTCACTTCCCG 60.250 55.000 1.53 0.00 0.00 5.14
3454 5217 1.666872 GACCGTGTTCACTTCCCGG 60.667 63.158 0.00 0.00 44.06 5.73
3455 5218 2.091102 GACCGTGTTCACTTCCCGGA 62.091 60.000 0.73 0.00 41.08 5.14
3621 5384 5.178096 TGGATGAGGTGAAGAAAATAGCA 57.822 39.130 0.00 0.00 0.00 3.49
3935 5698 2.106166 CTCTGCCTGGGAGCTATTTCAT 59.894 50.000 10.78 0.00 0.00 2.57
4290 6053 4.760878 TGTGCGGCTGTTTATCAATACTA 58.239 39.130 0.00 0.00 0.00 1.82
4359 6122 2.092592 GTGTTCGGGGATAAATCTGGGT 60.093 50.000 0.00 0.00 0.00 4.51
4784 6549 6.065976 ACTATTGACCCAAGACATGATTCA 57.934 37.500 0.00 0.00 0.00 2.57
4821 6586 0.179468 GCTATAAGTTCGGGGTGCCA 59.821 55.000 0.00 0.00 0.00 4.92
4865 6630 2.771943 TCTCACACCATATTGAGGGGTC 59.228 50.000 2.98 0.00 41.98 4.46
4977 6743 8.445493 GCAAAAATAGACAAAAGCTATGCATTT 58.555 29.630 3.54 0.00 29.36 2.32
5156 6922 1.582968 CGCATGGCTTGTCTGCTTT 59.417 52.632 2.12 0.00 33.75 3.51
5407 7174 1.519234 CATTGCTACGCCTGCTCGA 60.519 57.895 1.02 0.00 0.00 4.04
5417 7184 2.250939 CCTGCTCGAAACGTGCCAA 61.251 57.895 13.80 0.00 44.12 4.52
5443 7210 3.256631 GTCTTGTTGTAGGTTACTCCGGA 59.743 47.826 2.93 2.93 41.99 5.14
5656 7423 0.039527 GAATTTGGCGAGTGCGGTTT 60.040 50.000 0.00 0.00 44.10 3.27
5958 7725 1.895131 AGAACCAATGCGGCAAATCTT 59.105 42.857 6.82 0.00 39.03 2.40
5959 7726 2.299867 AGAACCAATGCGGCAAATCTTT 59.700 40.909 6.82 0.00 39.03 2.52
5976 7743 5.791336 ATCTTTCATGACGGATGCTAGTA 57.209 39.130 0.00 0.00 31.32 1.82
5977 7744 4.933330 TCTTTCATGACGGATGCTAGTAC 58.067 43.478 0.00 0.00 31.32 2.73
5978 7745 4.645136 TCTTTCATGACGGATGCTAGTACT 59.355 41.667 0.00 0.00 31.32 2.73
5979 7746 4.569761 TTCATGACGGATGCTAGTACTC 57.430 45.455 0.00 0.00 31.32 2.59
5980 7747 2.885266 TCATGACGGATGCTAGTACTCC 59.115 50.000 0.00 0.00 31.32 3.85
5981 7748 1.688772 TGACGGATGCTAGTACTCCC 58.311 55.000 0.00 0.00 0.00 4.30
5982 7749 1.064240 TGACGGATGCTAGTACTCCCA 60.064 52.381 0.00 0.00 0.00 4.37
5983 7750 1.609555 GACGGATGCTAGTACTCCCAG 59.390 57.143 0.00 0.00 0.00 4.45
5984 7751 0.962489 CGGATGCTAGTACTCCCAGG 59.038 60.000 0.00 0.00 0.00 4.45
5985 7752 1.478837 CGGATGCTAGTACTCCCAGGA 60.479 57.143 0.00 0.00 0.00 3.86
5986 7753 2.243810 GGATGCTAGTACTCCCAGGAG 58.756 57.143 12.29 12.29 46.91 3.69
6179 7947 0.165079 CGTGAAAAACCCCATCGTCG 59.835 55.000 0.00 0.00 0.00 5.12
6693 8506 2.589442 GGCGACGGGTTGACAACA 60.589 61.111 19.58 0.00 0.00 3.33
6709 8522 4.082733 TGACAACATTTTCCGTGACAACAA 60.083 37.500 0.00 0.00 0.00 2.83
6964 8781 6.681729 TGGGTAGCTTATATACTCCTTTGG 57.318 41.667 0.00 0.00 0.00 3.28
7418 10581 7.318141 ACAATCAGTTATCATCTTTGCAAAGG 58.682 34.615 33.01 20.88 36.67 3.11
7793 11014 3.648545 CCCTGGGAGTATAAAAGAGGAGG 59.351 52.174 7.01 0.00 0.00 4.30
7794 11015 3.648545 CCTGGGAGTATAAAAGAGGAGGG 59.351 52.174 0.00 0.00 0.00 4.30
7795 11016 3.648545 CTGGGAGTATAAAAGAGGAGGGG 59.351 52.174 0.00 0.00 0.00 4.79
7796 11017 2.980379 GGGAGTATAAAAGAGGAGGGGG 59.020 54.545 0.00 0.00 0.00 5.40
7814 11035 2.280797 GCACCGCCAGAAGACACA 60.281 61.111 0.00 0.00 0.00 3.72
7815 11036 1.891919 GCACCGCCAGAAGACACAA 60.892 57.895 0.00 0.00 0.00 3.33
7816 11037 1.941812 CACCGCCAGAAGACACAAC 59.058 57.895 0.00 0.00 0.00 3.32
7817 11038 0.813610 CACCGCCAGAAGACACAACA 60.814 55.000 0.00 0.00 0.00 3.33
7818 11039 0.107410 ACCGCCAGAAGACACAACAA 60.107 50.000 0.00 0.00 0.00 2.83
7819 11040 1.021202 CCGCCAGAAGACACAACAAA 58.979 50.000 0.00 0.00 0.00 2.83
7820 11041 1.403679 CCGCCAGAAGACACAACAAAA 59.596 47.619 0.00 0.00 0.00 2.44
7821 11042 2.450160 CGCCAGAAGACACAACAAAAC 58.550 47.619 0.00 0.00 0.00 2.43
7822 11043 2.159448 CGCCAGAAGACACAACAAAACA 60.159 45.455 0.00 0.00 0.00 2.83
7823 11044 3.489059 CGCCAGAAGACACAACAAAACAT 60.489 43.478 0.00 0.00 0.00 2.71
7824 11045 4.432712 GCCAGAAGACACAACAAAACATT 58.567 39.130 0.00 0.00 0.00 2.71
7825 11046 4.268405 GCCAGAAGACACAACAAAACATTG 59.732 41.667 0.00 0.00 0.00 2.82
7826 11047 5.410067 CCAGAAGACACAACAAAACATTGT 58.590 37.500 0.00 0.00 40.95 2.71
7827 11048 5.868801 CCAGAAGACACAACAAAACATTGTT 59.131 36.000 0.00 0.00 45.17 2.83
7828 11049 7.032580 CCAGAAGACACAACAAAACATTGTTA 58.967 34.615 1.76 0.00 42.69 2.41
7829 11050 7.220683 CCAGAAGACACAACAAAACATTGTTAG 59.779 37.037 1.76 1.67 42.69 2.34
7830 11051 6.751888 AGAAGACACAACAAAACATTGTTAGC 59.248 34.615 1.76 0.00 42.69 3.09
7831 11052 6.207691 AGACACAACAAAACATTGTTAGCT 57.792 33.333 1.76 0.00 42.69 3.32
7832 11053 6.035843 AGACACAACAAAACATTGTTAGCTG 58.964 36.000 1.76 3.91 42.69 4.24
7833 11054 5.719173 ACACAACAAAACATTGTTAGCTGT 58.281 33.333 1.76 4.51 42.69 4.40
7834 11055 5.576384 ACACAACAAAACATTGTTAGCTGTG 59.424 36.000 23.07 23.07 42.69 3.66
7835 11056 5.576384 CACAACAAAACATTGTTAGCTGTGT 59.424 36.000 19.72 11.87 42.69 3.72
7836 11057 5.576384 ACAACAAAACATTGTTAGCTGTGTG 59.424 36.000 1.76 9.72 42.69 3.82
7837 11058 4.111916 ACAAAACATTGTTAGCTGTGTGC 58.888 39.130 1.76 0.00 43.29 4.57
7838 11059 6.684461 AACAAAACATTGTTAGCTGTGTGCG 61.684 40.000 1.76 0.00 42.74 5.34
7861 11082 3.191182 CCCCCTCCACAGTTTATGC 57.809 57.895 0.00 0.00 0.00 3.14
7862 11083 0.395724 CCCCCTCCACAGTTTATGCC 60.396 60.000 0.00 0.00 0.00 4.40
7863 11084 0.625849 CCCCTCCACAGTTTATGCCT 59.374 55.000 0.00 0.00 0.00 4.75
7864 11085 1.408822 CCCCTCCACAGTTTATGCCTC 60.409 57.143 0.00 0.00 0.00 4.70
7865 11086 1.408822 CCCTCCACAGTTTATGCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
7866 11087 1.656652 CTCCACAGTTTATGCCTCCG 58.343 55.000 0.00 0.00 0.00 4.63
7867 11088 0.251916 TCCACAGTTTATGCCTCCGG 59.748 55.000 0.00 0.00 0.00 5.14
7868 11089 0.035439 CCACAGTTTATGCCTCCGGT 60.035 55.000 0.00 0.00 0.00 5.28
7869 11090 1.369625 CACAGTTTATGCCTCCGGTC 58.630 55.000 0.00 0.00 0.00 4.79
7870 11091 0.981183 ACAGTTTATGCCTCCGGTCA 59.019 50.000 0.00 0.00 0.00 4.02
7871 11092 1.559682 ACAGTTTATGCCTCCGGTCAT 59.440 47.619 0.00 6.60 0.00 3.06
7872 11093 2.026262 ACAGTTTATGCCTCCGGTCATT 60.026 45.455 0.00 0.00 0.00 2.57
7873 11094 3.016736 CAGTTTATGCCTCCGGTCATTT 58.983 45.455 0.00 0.00 0.00 2.32
7874 11095 3.443681 CAGTTTATGCCTCCGGTCATTTT 59.556 43.478 0.00 0.00 0.00 1.82
7875 11096 3.694566 AGTTTATGCCTCCGGTCATTTTC 59.305 43.478 0.00 0.00 0.00 2.29
7876 11097 3.358111 TTATGCCTCCGGTCATTTTCA 57.642 42.857 0.00 0.00 0.00 2.69
7877 11098 1.463674 ATGCCTCCGGTCATTTTCAC 58.536 50.000 0.00 0.00 0.00 3.18
7878 11099 0.953471 TGCCTCCGGTCATTTTCACG 60.953 55.000 0.00 0.00 0.00 4.35
7879 11100 0.953960 GCCTCCGGTCATTTTCACGT 60.954 55.000 0.00 0.00 0.00 4.49
7880 11101 1.673626 GCCTCCGGTCATTTTCACGTA 60.674 52.381 0.00 0.00 0.00 3.57
7881 11102 2.268298 CCTCCGGTCATTTTCACGTAG 58.732 52.381 0.00 0.00 0.00 3.51
7894 11115 3.715854 ACGTAGTGCTTAGGCGAAG 57.284 52.632 2.68 2.68 42.51 3.79
7907 11128 4.732106 CGAAGCCCTACGTGGATC 57.268 61.111 0.00 0.00 38.35 3.36
7908 11129 1.813859 CGAAGCCCTACGTGGATCA 59.186 57.895 0.00 0.00 38.35 2.92
7909 11130 0.527817 CGAAGCCCTACGTGGATCAC 60.528 60.000 0.00 0.00 38.35 3.06
7910 11131 0.824759 GAAGCCCTACGTGGATCACT 59.175 55.000 0.00 0.00 38.35 3.41
7911 11132 1.207329 GAAGCCCTACGTGGATCACTT 59.793 52.381 0.00 0.00 38.35 3.16
7912 11133 0.824759 AGCCCTACGTGGATCACTTC 59.175 55.000 0.00 0.00 38.35 3.01
7913 11134 0.535335 GCCCTACGTGGATCACTTCA 59.465 55.000 0.00 0.00 38.35 3.02
7914 11135 1.739371 GCCCTACGTGGATCACTTCAC 60.739 57.143 0.00 0.00 38.35 3.18
7915 11136 1.134788 CCCTACGTGGATCACTTCACC 60.135 57.143 0.00 0.00 38.35 4.02
7916 11137 1.548719 CCTACGTGGATCACTTCACCA 59.451 52.381 0.00 0.00 38.35 4.17
7917 11138 2.168521 CCTACGTGGATCACTTCACCAT 59.831 50.000 0.00 0.00 38.35 3.55
7918 11139 2.386661 ACGTGGATCACTTCACCATC 57.613 50.000 0.00 0.00 36.09 3.51
7919 11140 1.623311 ACGTGGATCACTTCACCATCA 59.377 47.619 0.00 0.00 36.09 3.07
7920 11141 2.002586 CGTGGATCACTTCACCATCAC 58.997 52.381 0.00 0.00 36.09 3.06
7921 11142 2.359900 GTGGATCACTTCACCATCACC 58.640 52.381 0.00 0.00 36.09 4.02
7922 11143 1.984424 TGGATCACTTCACCATCACCA 59.016 47.619 0.00 0.00 0.00 4.17
7923 11144 2.290260 TGGATCACTTCACCATCACCAC 60.290 50.000 0.00 0.00 0.00 4.16
7924 11145 2.290260 GGATCACTTCACCATCACCACA 60.290 50.000 0.00 0.00 0.00 4.17
7925 11146 2.254546 TCACTTCACCATCACCACAC 57.745 50.000 0.00 0.00 0.00 3.82
7926 11147 1.202758 TCACTTCACCATCACCACACC 60.203 52.381 0.00 0.00 0.00 4.16
7927 11148 0.250295 ACTTCACCATCACCACACCG 60.250 55.000 0.00 0.00 0.00 4.94
7928 11149 0.250295 CTTCACCATCACCACACCGT 60.250 55.000 0.00 0.00 0.00 4.83
7929 11150 0.250124 TTCACCATCACCACACCGTC 60.250 55.000 0.00 0.00 0.00 4.79
7930 11151 2.027073 CACCATCACCACACCGTCG 61.027 63.158 0.00 0.00 0.00 5.12
7931 11152 2.342279 CCATCACCACACCGTCGT 59.658 61.111 0.00 0.00 0.00 4.34
7932 11153 1.180456 ACCATCACCACACCGTCGTA 61.180 55.000 0.00 0.00 0.00 3.43
7933 11154 0.734942 CCATCACCACACCGTCGTAC 60.735 60.000 0.00 0.00 0.00 3.67
7934 11155 0.242825 CATCACCACACCGTCGTACT 59.757 55.000 0.00 0.00 0.00 2.73
7935 11156 0.242825 ATCACCACACCGTCGTACTG 59.757 55.000 0.00 0.00 0.00 2.74
7936 11157 0.818852 TCACCACACCGTCGTACTGA 60.819 55.000 0.00 0.00 0.00 3.41
7937 11158 0.662374 CACCACACCGTCGTACTGAC 60.662 60.000 7.51 7.51 44.53 3.51
7948 11169 2.434428 TCGTACTGACAGAACTCTCCC 58.566 52.381 10.08 0.00 0.00 4.30
7949 11170 2.040012 TCGTACTGACAGAACTCTCCCT 59.960 50.000 10.08 0.00 0.00 4.20
7950 11171 2.420722 CGTACTGACAGAACTCTCCCTC 59.579 54.545 10.08 0.00 0.00 4.30
7951 11172 1.540267 ACTGACAGAACTCTCCCTCG 58.460 55.000 10.08 0.00 0.00 4.63
7952 11173 1.074084 ACTGACAGAACTCTCCCTCGA 59.926 52.381 10.08 0.00 0.00 4.04
7953 11174 1.470890 CTGACAGAACTCTCCCTCGAC 59.529 57.143 0.00 0.00 0.00 4.20
7954 11175 1.202891 TGACAGAACTCTCCCTCGACA 60.203 52.381 0.00 0.00 0.00 4.35
7955 11176 1.200484 GACAGAACTCTCCCTCGACAC 59.800 57.143 0.00 0.00 0.00 3.67
7956 11177 1.202952 ACAGAACTCTCCCTCGACACT 60.203 52.381 0.00 0.00 0.00 3.55
7957 11178 1.889829 CAGAACTCTCCCTCGACACTT 59.110 52.381 0.00 0.00 0.00 3.16
7958 11179 2.297597 CAGAACTCTCCCTCGACACTTT 59.702 50.000 0.00 0.00 0.00 2.66
7959 11180 3.506455 CAGAACTCTCCCTCGACACTTTA 59.494 47.826 0.00 0.00 0.00 1.85
7960 11181 3.506844 AGAACTCTCCCTCGACACTTTAC 59.493 47.826 0.00 0.00 0.00 2.01
7961 11182 3.157750 ACTCTCCCTCGACACTTTACT 57.842 47.619 0.00 0.00 0.00 2.24
7962 11183 4.298103 ACTCTCCCTCGACACTTTACTA 57.702 45.455 0.00 0.00 0.00 1.82
7963 11184 4.263435 ACTCTCCCTCGACACTTTACTAG 58.737 47.826 0.00 0.00 0.00 2.57
7964 11185 4.019501 ACTCTCCCTCGACACTTTACTAGA 60.020 45.833 0.00 0.00 0.00 2.43
7965 11186 5.113446 TCTCCCTCGACACTTTACTAGAT 57.887 43.478 0.00 0.00 0.00 1.98
7966 11187 5.124645 TCTCCCTCGACACTTTACTAGATC 58.875 45.833 0.00 0.00 0.00 2.75
7967 11188 4.851843 TCCCTCGACACTTTACTAGATCA 58.148 43.478 0.00 0.00 0.00 2.92
7968 11189 5.258841 TCCCTCGACACTTTACTAGATCAA 58.741 41.667 0.00 0.00 0.00 2.57
7969 11190 5.357314 TCCCTCGACACTTTACTAGATCAAG 59.643 44.000 0.00 0.00 0.00 3.02
7970 11191 5.357314 CCCTCGACACTTTACTAGATCAAGA 59.643 44.000 0.00 0.00 0.00 3.02
7971 11192 6.459024 CCCTCGACACTTTACTAGATCAAGAG 60.459 46.154 0.00 0.00 0.00 2.85
7972 11193 6.094325 CCTCGACACTTTACTAGATCAAGAGT 59.906 42.308 0.00 0.12 0.00 3.24
7973 11194 7.362229 CCTCGACACTTTACTAGATCAAGAGTT 60.362 40.741 0.00 0.00 0.00 3.01
7974 11195 7.883217 TCGACACTTTACTAGATCAAGAGTTT 58.117 34.615 0.00 0.00 0.00 2.66
7975 11196 7.808381 TCGACACTTTACTAGATCAAGAGTTTG 59.192 37.037 0.00 0.00 35.57 2.93
7976 11197 7.808381 CGACACTTTACTAGATCAAGAGTTTGA 59.192 37.037 0.00 0.00 46.67 2.69
7977 11198 9.134734 GACACTTTACTAGATCAAGAGTTTGAG 57.865 37.037 0.00 0.00 45.89 3.02
7978 11199 8.091449 ACACTTTACTAGATCAAGAGTTTGAGG 58.909 37.037 0.00 0.00 45.89 3.86
7979 11200 8.307483 CACTTTACTAGATCAAGAGTTTGAGGA 58.693 37.037 0.00 0.00 45.89 3.71
7980 11201 8.871125 ACTTTACTAGATCAAGAGTTTGAGGAA 58.129 33.333 0.00 0.00 45.89 3.36
7981 11202 9.145865 CTTTACTAGATCAAGAGTTTGAGGAAC 57.854 37.037 0.00 0.00 45.89 3.62
7982 11203 5.715070 ACTAGATCAAGAGTTTGAGGAACG 58.285 41.667 0.00 0.00 45.89 3.95
7983 11204 4.608948 AGATCAAGAGTTTGAGGAACGT 57.391 40.909 0.00 0.00 45.89 3.99
7984 11205 4.561105 AGATCAAGAGTTTGAGGAACGTC 58.439 43.478 0.00 0.00 45.89 4.34
7985 11206 3.812156 TCAAGAGTTTGAGGAACGTCA 57.188 42.857 0.00 0.00 43.20 4.35
7986 11207 4.336889 TCAAGAGTTTGAGGAACGTCAT 57.663 40.909 0.00 0.00 43.20 3.06
7987 11208 4.307432 TCAAGAGTTTGAGGAACGTCATC 58.693 43.478 0.00 0.00 43.20 2.92
7988 11209 2.947852 AGAGTTTGAGGAACGTCATCG 58.052 47.619 0.00 0.00 43.20 3.84
7989 11210 2.557056 AGAGTTTGAGGAACGTCATCGA 59.443 45.455 0.00 0.00 43.20 3.59
7990 11211 2.917971 GAGTTTGAGGAACGTCATCGAG 59.082 50.000 0.00 0.00 43.20 4.04
7991 11212 1.390463 GTTTGAGGAACGTCATCGAGC 59.610 52.381 0.00 0.00 40.62 5.03
7992 11213 0.888619 TTGAGGAACGTCATCGAGCT 59.111 50.000 0.00 0.00 40.62 4.09
7993 11214 0.452184 TGAGGAACGTCATCGAGCTC 59.548 55.000 2.73 2.73 40.62 4.09
7994 11215 0.452184 GAGGAACGTCATCGAGCTCA 59.548 55.000 15.40 1.08 40.62 4.26
7995 11216 0.888619 AGGAACGTCATCGAGCTCAA 59.111 50.000 15.40 0.00 40.62 3.02
7996 11217 0.992802 GGAACGTCATCGAGCTCAAC 59.007 55.000 15.40 5.08 40.62 3.18
7997 11218 1.668919 GGAACGTCATCGAGCTCAACA 60.669 52.381 15.40 0.00 40.62 3.33
7998 11219 2.263077 GAACGTCATCGAGCTCAACAT 58.737 47.619 15.40 0.00 40.62 2.71
7999 11220 1.633561 ACGTCATCGAGCTCAACATG 58.366 50.000 15.40 12.16 40.62 3.21
8000 11221 1.067565 ACGTCATCGAGCTCAACATGT 60.068 47.619 15.40 0.00 40.62 3.21
8001 11222 1.322637 CGTCATCGAGCTCAACATGTG 59.677 52.381 15.40 6.30 39.71 3.21
8002 11223 1.061711 GTCATCGAGCTCAACATGTGC 59.938 52.381 15.40 0.00 37.15 4.57
8003 11224 1.081094 CATCGAGCTCAACATGTGCA 58.919 50.000 15.40 0.00 39.15 4.57
8004 11225 1.062148 CATCGAGCTCAACATGTGCAG 59.938 52.381 15.40 0.00 39.15 4.41
8005 11226 0.318120 TCGAGCTCAACATGTGCAGA 59.682 50.000 15.40 0.00 39.15 4.26
8006 11227 1.150827 CGAGCTCAACATGTGCAGAA 58.849 50.000 15.40 0.00 39.15 3.02
8007 11228 1.136141 CGAGCTCAACATGTGCAGAAC 60.136 52.381 15.40 0.00 39.15 3.01
8008 11229 2.149578 GAGCTCAACATGTGCAGAACT 58.850 47.619 9.40 0.00 39.15 3.01
8009 11230 2.149578 AGCTCAACATGTGCAGAACTC 58.850 47.619 0.00 0.00 39.15 3.01
8010 11231 1.875514 GCTCAACATGTGCAGAACTCA 59.124 47.619 0.00 0.00 36.90 3.41
8011 11232 2.291465 GCTCAACATGTGCAGAACTCAA 59.709 45.455 0.00 0.00 36.90 3.02
8012 11233 3.243168 GCTCAACATGTGCAGAACTCAAA 60.243 43.478 0.00 0.00 36.90 2.69
8013 11234 4.534168 CTCAACATGTGCAGAACTCAAAG 58.466 43.478 0.00 0.00 0.00 2.77
8014 11235 3.316029 TCAACATGTGCAGAACTCAAAGG 59.684 43.478 0.00 0.00 0.00 3.11
8015 11236 2.936202 ACATGTGCAGAACTCAAAGGT 58.064 42.857 0.00 0.00 0.00 3.50
8016 11237 2.620115 ACATGTGCAGAACTCAAAGGTG 59.380 45.455 0.00 0.00 0.00 4.00
8017 11238 2.418368 TGTGCAGAACTCAAAGGTGT 57.582 45.000 0.00 0.00 0.00 4.16
8018 11239 2.288666 TGTGCAGAACTCAAAGGTGTC 58.711 47.619 0.00 0.00 0.00 3.67
8019 11240 1.261619 GTGCAGAACTCAAAGGTGTCG 59.738 52.381 0.00 0.00 0.00 4.35
8020 11241 1.134521 TGCAGAACTCAAAGGTGTCGT 60.135 47.619 0.00 0.00 0.00 4.34
8021 11242 2.101750 TGCAGAACTCAAAGGTGTCGTA 59.898 45.455 0.00 0.00 0.00 3.43
8022 11243 2.475487 GCAGAACTCAAAGGTGTCGTAC 59.525 50.000 0.00 0.00 0.00 3.67
8023 11244 2.724690 CAGAACTCAAAGGTGTCGTACG 59.275 50.000 9.53 9.53 0.00 3.67
8024 11245 2.360165 AGAACTCAAAGGTGTCGTACGT 59.640 45.455 16.05 0.00 0.00 3.57
8025 11246 2.877043 ACTCAAAGGTGTCGTACGTT 57.123 45.000 16.05 0.00 38.93 3.99
8026 11247 2.735823 ACTCAAAGGTGTCGTACGTTC 58.264 47.619 16.05 10.37 36.44 3.95
8027 11248 1.712350 CTCAAAGGTGTCGTACGTTCG 59.288 52.381 16.05 8.41 36.44 3.95
8028 11249 0.780002 CAAAGGTGTCGTACGTTCGG 59.220 55.000 16.05 0.00 36.44 4.30
8029 11250 0.385390 AAAGGTGTCGTACGTTCGGT 59.615 50.000 16.05 0.00 36.44 4.69
8030 11251 0.318107 AAGGTGTCGTACGTTCGGTG 60.318 55.000 16.05 0.00 32.21 4.94
8031 11252 1.008538 GGTGTCGTACGTTCGGTGT 60.009 57.895 16.05 0.00 0.00 4.16
8032 11253 0.237235 GGTGTCGTACGTTCGGTGTA 59.763 55.000 16.05 0.00 0.00 2.90
8033 11254 1.135689 GGTGTCGTACGTTCGGTGTAT 60.136 52.381 16.05 0.00 0.00 2.29
8034 11255 1.906966 GTGTCGTACGTTCGGTGTATG 59.093 52.381 16.05 0.00 0.00 2.39
8035 11256 1.803555 TGTCGTACGTTCGGTGTATGA 59.196 47.619 16.05 0.00 35.92 2.15
8036 11257 2.419673 TGTCGTACGTTCGGTGTATGAT 59.580 45.455 16.05 0.00 39.34 2.45
8037 11258 3.031812 GTCGTACGTTCGGTGTATGATC 58.968 50.000 16.05 0.00 39.34 2.92
8038 11259 2.031941 CGTACGTTCGGTGTATGATCG 58.968 52.381 7.22 0.00 35.32 3.69
8039 11260 2.378806 GTACGTTCGGTGTATGATCGG 58.621 52.381 0.00 0.00 33.92 4.18
8040 11261 0.813184 ACGTTCGGTGTATGATCGGT 59.187 50.000 0.00 0.00 33.92 4.69
8041 11262 1.202222 ACGTTCGGTGTATGATCGGTC 60.202 52.381 0.00 0.00 33.92 4.79
8042 11263 1.474017 GTTCGGTGTATGATCGGTCG 58.526 55.000 0.00 0.00 0.00 4.79
8043 11264 1.064505 GTTCGGTGTATGATCGGTCGA 59.935 52.381 0.00 0.00 0.00 4.20
8044 11265 1.381522 TCGGTGTATGATCGGTCGAA 58.618 50.000 0.00 0.00 0.00 3.71
8045 11266 1.744522 TCGGTGTATGATCGGTCGAAA 59.255 47.619 0.00 0.00 0.00 3.46
8046 11267 1.850441 CGGTGTATGATCGGTCGAAAC 59.150 52.381 0.00 0.00 0.00 2.78
8047 11268 1.850441 GGTGTATGATCGGTCGAAACG 59.150 52.381 4.54 4.54 0.00 3.60
8048 11269 2.478370 GGTGTATGATCGGTCGAAACGA 60.478 50.000 14.64 14.64 45.19 3.85
8049 11270 2.782192 GTGTATGATCGGTCGAAACGAG 59.218 50.000 16.84 0.00 44.24 4.18
8050 11271 2.679336 TGTATGATCGGTCGAAACGAGA 59.321 45.455 16.84 8.20 44.24 4.04
8051 11272 2.933495 ATGATCGGTCGAAACGAGAA 57.067 45.000 16.84 9.28 44.24 2.87
8052 11273 2.257974 TGATCGGTCGAAACGAGAAG 57.742 50.000 16.84 0.00 44.24 2.85
8053 11274 1.808343 TGATCGGTCGAAACGAGAAGA 59.192 47.619 16.84 0.00 44.24 2.87
8054 11275 2.227149 TGATCGGTCGAAACGAGAAGAA 59.773 45.455 16.84 1.25 44.24 2.52
8055 11276 2.327081 TCGGTCGAAACGAGAAGAAG 57.673 50.000 9.13 0.00 36.23 2.85
8056 11277 1.605710 TCGGTCGAAACGAGAAGAAGT 59.394 47.619 9.13 0.00 36.23 3.01
8057 11278 2.033801 TCGGTCGAAACGAGAAGAAGTT 59.966 45.455 9.13 0.00 36.23 2.66
8058 11279 2.404361 CGGTCGAAACGAGAAGAAGTTC 59.596 50.000 4.92 0.00 36.23 3.01
8059 11280 2.404361 GGTCGAAACGAGAAGAAGTTCG 59.596 50.000 0.00 0.00 42.26 3.95
8060 11281 3.294943 GTCGAAACGAGAAGAAGTTCGA 58.705 45.455 2.92 2.92 39.93 3.71
8061 11282 3.117669 GTCGAAACGAGAAGAAGTTCGAC 59.882 47.826 17.95 17.95 40.13 4.20
8062 11283 3.003068 TCGAAACGAGAAGAAGTTCGACT 59.997 43.478 2.92 0.99 39.93 4.18
8063 11284 4.212004 TCGAAACGAGAAGAAGTTCGACTA 59.788 41.667 2.92 0.00 39.93 2.59
8064 11285 4.317811 CGAAACGAGAAGAAGTTCGACTAC 59.682 45.833 0.51 0.00 39.93 2.73
8065 11286 4.825546 AACGAGAAGAAGTTCGACTACA 57.174 40.909 0.51 0.00 39.93 2.74
8066 11287 5.373981 AACGAGAAGAAGTTCGACTACAT 57.626 39.130 0.51 0.00 39.93 2.29
8067 11288 4.972201 ACGAGAAGAAGTTCGACTACATC 58.028 43.478 0.51 0.00 39.93 3.06
8078 11299 1.121240 GACTACATCGATCAACCGCG 58.879 55.000 0.00 0.00 0.00 6.46
8079 11300 0.454600 ACTACATCGATCAACCGCGT 59.545 50.000 4.92 0.00 0.00 6.01
8080 11301 1.135199 ACTACATCGATCAACCGCGTT 60.135 47.619 4.92 0.00 0.00 4.84
8081 11302 1.255342 CTACATCGATCAACCGCGTTG 59.745 52.381 4.92 10.14 43.99 4.10
8082 11303 0.669318 ACATCGATCAACCGCGTTGT 60.669 50.000 16.97 2.11 43.23 3.32
8083 11304 0.025001 CATCGATCAACCGCGTTGTC 59.975 55.000 16.97 13.42 43.23 3.18
8084 11305 0.389296 ATCGATCAACCGCGTTGTCA 60.389 50.000 16.97 4.13 43.23 3.58
8085 11306 0.597898 TCGATCAACCGCGTTGTCAA 60.598 50.000 16.97 3.56 43.23 3.18
8086 11307 0.233590 CGATCAACCGCGTTGTCAAA 59.766 50.000 16.97 3.28 43.23 2.69
8087 11308 1.670326 GATCAACCGCGTTGTCAAAC 58.330 50.000 16.97 6.11 43.23 2.93
8097 11318 2.475200 GTTGTCAAACGCTTCTGCTT 57.525 45.000 0.00 0.00 36.97 3.91
8098 11319 2.797491 GTTGTCAAACGCTTCTGCTTT 58.203 42.857 0.00 0.00 36.97 3.51
8099 11320 2.755836 TGTCAAACGCTTCTGCTTTC 57.244 45.000 0.00 0.00 36.97 2.62
8100 11321 1.003972 TGTCAAACGCTTCTGCTTTCG 60.004 47.619 0.00 0.00 36.97 3.46
8101 11322 0.586319 TCAAACGCTTCTGCTTTCGG 59.414 50.000 0.00 0.00 36.97 4.30
8102 11323 0.307760 CAAACGCTTCTGCTTTCGGT 59.692 50.000 0.00 0.00 36.97 4.69
8103 11324 0.586802 AAACGCTTCTGCTTTCGGTC 59.413 50.000 0.00 0.00 36.97 4.79
8104 11325 0.249911 AACGCTTCTGCTTTCGGTCT 60.250 50.000 0.00 0.00 36.97 3.85
8105 11326 0.601558 ACGCTTCTGCTTTCGGTCTA 59.398 50.000 0.00 0.00 36.97 2.59
8106 11327 0.992802 CGCTTCTGCTTTCGGTCTAC 59.007 55.000 0.00 0.00 36.97 2.59
8107 11328 0.992802 GCTTCTGCTTTCGGTCTACG 59.007 55.000 0.00 0.00 39.13 3.51
8108 11329 1.402456 GCTTCTGCTTTCGGTCTACGA 60.402 52.381 0.00 0.00 42.56 3.43
8109 11330 3.296057 GCTTCTGCTTTCGGTCTACGAG 61.296 54.545 0.00 0.00 43.96 4.18
8123 11344 2.760634 TACGAGGGTACGTAGACACA 57.239 50.000 0.00 0.00 44.72 3.72
8124 11345 1.160137 ACGAGGGTACGTAGACACAC 58.840 55.000 0.00 0.00 44.72 3.82
8125 11346 1.271054 ACGAGGGTACGTAGACACACT 60.271 52.381 0.00 0.00 44.72 3.55
8126 11347 1.396301 CGAGGGTACGTAGACACACTC 59.604 57.143 8.17 8.17 40.93 3.51
8127 11348 2.709213 GAGGGTACGTAGACACACTCT 58.291 52.381 10.55 0.00 41.06 3.24
8128 11349 2.677337 GAGGGTACGTAGACACACTCTC 59.323 54.545 10.55 4.79 41.06 3.20
8129 11350 1.742268 GGGTACGTAGACACACTCTCC 59.258 57.143 0.00 0.00 0.00 3.71
8130 11351 1.742268 GGTACGTAGACACACTCTCCC 59.258 57.143 0.00 0.00 0.00 4.30
8131 11352 1.742268 GTACGTAGACACACTCTCCCC 59.258 57.143 0.00 0.00 0.00 4.81
8132 11353 0.404812 ACGTAGACACACTCTCCCCT 59.595 55.000 0.00 0.00 0.00 4.79
8133 11354 1.096416 CGTAGACACACTCTCCCCTC 58.904 60.000 0.00 0.00 0.00 4.30
8134 11355 1.340211 CGTAGACACACTCTCCCCTCT 60.340 57.143 0.00 0.00 0.00 3.69
8135 11356 2.371306 GTAGACACACTCTCCCCTCTC 58.629 57.143 0.00 0.00 0.00 3.20
8136 11357 0.322997 AGACACACTCTCCCCTCTCG 60.323 60.000 0.00 0.00 0.00 4.04
8137 11358 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
8138 11359 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
8139 11360 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
8140 11361 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
8141 11362 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
8142 11363 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
8143 11364 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
8144 11365 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
8145 11366 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
8146 11367 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
8147 11368 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
8148 11369 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
8149 11370 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
8150 11371 2.484417 CCCTCTCGTTGCTATGCATCTT 60.484 50.000 0.19 0.00 38.76 2.40
8151 11372 2.799412 CCTCTCGTTGCTATGCATCTTC 59.201 50.000 0.19 0.00 38.76 2.87
8152 11373 3.492309 CCTCTCGTTGCTATGCATCTTCT 60.492 47.826 0.19 0.00 38.76 2.85
8153 11374 4.261783 CCTCTCGTTGCTATGCATCTTCTA 60.262 45.833 0.19 0.00 38.76 2.10
8154 11375 4.864633 TCTCGTTGCTATGCATCTTCTAG 58.135 43.478 0.19 0.00 38.76 2.43
8155 11376 4.580580 TCTCGTTGCTATGCATCTTCTAGA 59.419 41.667 0.19 0.00 38.76 2.43
8156 11377 5.242615 TCTCGTTGCTATGCATCTTCTAGAT 59.757 40.000 0.19 0.00 38.76 1.98
8157 11378 6.431234 TCTCGTTGCTATGCATCTTCTAGATA 59.569 38.462 0.19 0.00 38.76 1.98
8158 11379 6.616017 TCGTTGCTATGCATCTTCTAGATAG 58.384 40.000 0.19 0.00 38.76 2.08
8159 11380 6.431234 TCGTTGCTATGCATCTTCTAGATAGA 59.569 38.462 0.19 0.11 38.76 1.98
8160 11381 7.121907 TCGTTGCTATGCATCTTCTAGATAGAT 59.878 37.037 0.19 10.06 38.76 1.98
8161 11382 7.431960 CGTTGCTATGCATCTTCTAGATAGATC 59.568 40.741 0.19 9.17 38.76 2.75
8162 11383 8.469200 GTTGCTATGCATCTTCTAGATAGATCT 58.531 37.037 0.19 0.00 38.76 2.75
8163 11384 8.592529 TGCTATGCATCTTCTAGATAGATCTT 57.407 34.615 0.19 0.00 32.12 2.40
8164 11385 8.468399 TGCTATGCATCTTCTAGATAGATCTTG 58.532 37.037 0.19 0.00 32.12 3.02
8165 11386 7.436080 GCTATGCATCTTCTAGATAGATCTTGC 59.564 40.741 0.19 13.69 38.32 4.01
8166 11387 5.707931 TGCATCTTCTAGATAGATCTTGCG 58.292 41.667 0.00 5.35 38.32 4.85
8167 11388 5.242615 TGCATCTTCTAGATAGATCTTGCGT 59.757 40.000 0.00 0.00 38.32 5.24
8168 11389 5.572511 GCATCTTCTAGATAGATCTTGCGTG 59.427 44.000 0.00 5.42 38.32 5.34
8169 11390 6.569418 GCATCTTCTAGATAGATCTTGCGTGA 60.569 42.308 0.00 0.00 38.32 4.35
8170 11391 6.552859 TCTTCTAGATAGATCTTGCGTGAG 57.447 41.667 0.00 0.00 38.32 3.51
8206 11427 6.724694 TTTGAAATTGCATGCTATGTTTCC 57.275 33.333 20.33 1.00 0.00 3.13
8207 11428 4.757594 TGAAATTGCATGCTATGTTTCCC 58.242 39.130 20.33 0.64 0.00 3.97
8208 11429 4.222366 TGAAATTGCATGCTATGTTTCCCA 59.778 37.500 20.33 3.39 0.00 4.37
8209 11430 4.822685 AATTGCATGCTATGTTTCCCAA 57.177 36.364 20.33 0.30 0.00 4.12
8210 11431 3.591196 TTGCATGCTATGTTTCCCAAC 57.409 42.857 20.33 0.00 0.00 3.77
8380 11601 2.552155 CCATGAAGGGTCCACGAAGAAA 60.552 50.000 0.00 0.00 0.00 2.52
8410 11631 1.356738 CTATCCCACCATGGCCATCAT 59.643 52.381 17.61 3.38 35.79 2.45
8420 11641 0.324552 TGGCCATCATCCACAAAGGG 60.325 55.000 0.00 0.00 38.24 3.95
8426 11647 0.112995 TCATCCACAAAGGGCTTGCT 59.887 50.000 0.00 0.00 38.75 3.91
8427 11648 1.354031 TCATCCACAAAGGGCTTGCTA 59.646 47.619 0.00 0.00 38.75 3.49
8434 11655 0.955919 AAAGGGCTTGCTACACTCGC 60.956 55.000 0.00 0.00 0.00 5.03
8444 11665 3.200483 TGCTACACTCGCGTAGATCTTA 58.800 45.455 5.77 0.00 41.21 2.10
8530 11754 2.158726 TCCCAAGTGACACCTAACCAAC 60.159 50.000 0.84 0.00 0.00 3.77
8671 11901 3.806949 TTTGGCTATGGTGGAAGAGTT 57.193 42.857 0.00 0.00 0.00 3.01
8731 11961 4.675063 AGGTTCAAATGGTAGGAATGGT 57.325 40.909 0.00 0.00 0.00 3.55
8768 11998 3.904339 ACACATGAGTAGGTGGTTCTCTT 59.096 43.478 0.00 0.00 42.60 2.85
8846 12077 0.196118 AGGGGGTGGAGGGGTATATG 59.804 60.000 0.00 0.00 0.00 1.78
8878 12109 4.339814 ACACAAAATCCAACCGTTACACAT 59.660 37.500 0.00 0.00 0.00 3.21
8921 12153 2.419667 CGAATGGTTAAACTCGGTGGT 58.580 47.619 0.00 0.00 0.00 4.16
8924 12156 4.317488 GAATGGTTAAACTCGGTGGTACA 58.683 43.478 0.00 0.00 0.00 2.90
8983 12215 0.249911 ACAGACTGGAACAACTCGGC 60.250 55.000 7.51 0.00 38.70 5.54
9013 12245 0.701731 TGCTAGGGCTTAGGGCAAAA 59.298 50.000 5.75 0.00 44.01 2.44
9097 12331 4.160439 AGAGAATATGTCAAGCCAACTCGA 59.840 41.667 0.00 0.00 0.00 4.04
9112 12346 1.203928 CTCGATGAGACCGATTGCAC 58.796 55.000 0.00 0.00 35.35 4.57
9149 12383 5.270083 CGAAGTAAATGCAACAAGTCACAA 58.730 37.500 0.00 0.00 0.00 3.33
9209 12444 6.100004 CGTATCAGTGAGACCAAACTGTTAT 58.900 40.000 12.15 0.00 43.49 1.89
9222 12457 6.149633 CCAAACTGTTATGGTTTCTAGCAAC 58.850 40.000 11.29 0.00 35.09 4.17
9273 12508 3.244561 GGATAGAAAGAATCGATGGGGCA 60.245 47.826 0.00 0.00 0.00 5.36
9282 12517 0.982852 TCGATGGGGCAGAGTTGGAT 60.983 55.000 0.00 0.00 0.00 3.41
9370 12608 5.240713 CTTGAGCAAGTAAGCCATTAAGG 57.759 43.478 2.11 0.00 35.54 2.69
9504 12742 2.044793 TTGAGGGGTCCACATCTCTT 57.955 50.000 0.00 0.00 0.00 2.85
9590 12833 9.888878 CAATGAGCTATATGTTGAATTACCAAG 57.111 33.333 0.00 0.00 0.00 3.61
9609 12852 4.407365 CAAGACCACCCAAGGATTAGTTT 58.593 43.478 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
385 387 2.158784 GGAGCTGATGCATTCTTCTCCT 60.159 50.000 21.15 6.05 42.74 3.69
716 719 2.554032 GGCATAACAAAGCAGTGACAGT 59.446 45.455 0.00 0.00 0.00 3.55
813 871 6.018669 GCTACAGTTCTGGAGGAAATTAATCG 60.019 42.308 13.13 0.00 35.51 3.34
969 1042 3.650950 AACCCATGCTGCCTCCGT 61.651 61.111 0.00 0.00 0.00 4.69
1053 1535 3.392947 TCCACCCACAACTAATCTGAACA 59.607 43.478 0.00 0.00 0.00 3.18
1066 1548 1.227823 CGCTGACTTTCCACCCACA 60.228 57.895 0.00 0.00 0.00 4.17
1195 1677 2.031012 CAGTCGCTGGTGCCTTGA 59.969 61.111 0.00 0.00 35.36 3.02
1382 1874 2.048784 CATGGATCTCCGCGCGAT 60.049 61.111 34.63 17.95 39.43 4.58
1435 1930 4.838152 GGATTCCTCAGCGCCGCA 62.838 66.667 13.36 0.00 0.00 5.69
1441 1936 2.203126 CGCCCTGGATTCCTCAGC 60.203 66.667 3.95 3.08 0.00 4.26
1562 3225 3.691342 TGGCGAGGTGTTCCCGAG 61.691 66.667 0.00 0.00 38.74 4.63
1623 3286 7.872061 ATAGGACAACACTATTATGATCCCA 57.128 36.000 0.00 0.00 0.00 4.37
1894 3642 2.354704 CCTGGCCGAGAGTTTCAACATA 60.355 50.000 0.00 0.00 0.00 2.29
1970 3718 2.646175 CCGTCACCGTCTCCATGGT 61.646 63.158 12.58 0.00 43.46 3.55
2575 4335 6.150474 TCGATGCCTACGAATAGATTCATGTA 59.850 38.462 3.31 0.00 36.61 2.29
3424 5187 9.909644 GAAGTGAACACGGTCTTGTATATATAT 57.090 33.333 0.00 0.00 36.20 0.86
3425 5188 8.355169 GGAAGTGAACACGGTCTTGTATATATA 58.645 37.037 9.97 0.00 36.20 0.86
3426 5189 7.208080 GGAAGTGAACACGGTCTTGTATATAT 58.792 38.462 9.97 0.00 36.20 0.86
3427 5190 6.406177 GGGAAGTGAACACGGTCTTGTATATA 60.406 42.308 9.97 0.00 36.20 0.86
3428 5191 5.416947 GGAAGTGAACACGGTCTTGTATAT 58.583 41.667 9.97 0.00 36.20 0.86
3429 5192 4.322198 GGGAAGTGAACACGGTCTTGTATA 60.322 45.833 9.97 0.00 36.20 1.47
3430 5193 3.556423 GGGAAGTGAACACGGTCTTGTAT 60.556 47.826 9.97 0.00 36.20 2.29
3431 5194 2.224113 GGGAAGTGAACACGGTCTTGTA 60.224 50.000 9.97 0.00 36.20 2.41
3432 5195 1.474498 GGGAAGTGAACACGGTCTTGT 60.474 52.381 9.97 0.00 36.20 3.16
3433 5196 1.226746 GGGAAGTGAACACGGTCTTG 58.773 55.000 9.97 0.00 36.20 3.02
3434 5197 0.249741 CGGGAAGTGAACACGGTCTT 60.250 55.000 9.97 0.00 36.20 3.01
3435 5198 1.366366 CGGGAAGTGAACACGGTCT 59.634 57.895 9.97 0.00 36.20 3.85
3436 5199 3.946907 CGGGAAGTGAACACGGTC 58.053 61.111 0.00 2.03 36.20 4.79
3439 5202 0.531090 TTGTCCGGGAAGTGAACACG 60.531 55.000 0.00 0.00 36.20 4.49
3440 5203 1.226746 CTTGTCCGGGAAGTGAACAC 58.773 55.000 0.00 0.00 0.00 3.32
3441 5204 0.107831 CCTTGTCCGGGAAGTGAACA 59.892 55.000 0.00 0.00 0.00 3.18
3442 5205 0.108019 ACCTTGTCCGGGAAGTGAAC 59.892 55.000 0.00 0.00 0.00 3.18
3443 5206 0.107831 CACCTTGTCCGGGAAGTGAA 59.892 55.000 0.00 0.00 0.00 3.18
3444 5207 1.752198 CACCTTGTCCGGGAAGTGA 59.248 57.895 0.00 0.00 0.00 3.41
3445 5208 1.966451 GCACCTTGTCCGGGAAGTG 60.966 63.158 0.00 5.88 0.00 3.16
3446 5209 2.430367 GCACCTTGTCCGGGAAGT 59.570 61.111 0.00 0.00 0.00 3.01
3447 5210 2.742372 CGCACCTTGTCCGGGAAG 60.742 66.667 0.00 4.23 0.00 3.46
3448 5211 4.323477 CCGCACCTTGTCCGGGAA 62.323 66.667 0.00 0.00 38.42 3.97
3452 5215 3.726517 CTTGCCGCACCTTGTCCG 61.727 66.667 0.00 0.00 0.00 4.79
3453 5216 2.281484 TCTTGCCGCACCTTGTCC 60.281 61.111 0.00 0.00 0.00 4.02
3454 5217 2.970974 GCTCTTGCCGCACCTTGTC 61.971 63.158 0.00 0.00 0.00 3.18
3455 5218 2.980233 GCTCTTGCCGCACCTTGT 60.980 61.111 0.00 0.00 0.00 3.16
3766 5529 0.250513 AACACCTTCTCCATCGAGCC 59.749 55.000 0.00 0.00 35.94 4.70
3969 5732 2.072298 GAGCGCTTGATGACTTTGAGT 58.928 47.619 13.26 0.00 0.00 3.41
4290 6053 1.429825 CGACGACTCGCCATCTCTT 59.570 57.895 0.00 0.00 31.91 2.85
4359 6122 3.749665 CCAAACATGGGAAAAAGAGCA 57.250 42.857 0.00 0.00 0.00 4.26
4978 6744 9.935682 CTTTGATCGCAGCTATTTCTAATAAAA 57.064 29.630 0.00 0.00 0.00 1.52
5156 6922 1.879380 CAAACGATGCAAGAACCAGGA 59.121 47.619 0.00 0.00 0.00 3.86
5407 7174 1.822186 AAGACCGCTTGGCACGTTT 60.822 52.632 0.00 0.00 35.53 3.60
5417 7184 2.631545 AGTAACCTACAACAAGACCGCT 59.368 45.455 0.00 0.00 0.00 5.52
5626 7393 1.132262 CGCCAAATTCAATGCGGTACT 59.868 47.619 0.00 0.00 43.08 2.73
5656 7423 0.823460 TATCATGCACTGCTCGGACA 59.177 50.000 1.98 0.00 0.00 4.02
5958 7725 3.318275 GGAGTACTAGCATCCGTCATGAA 59.682 47.826 0.00 0.00 33.80 2.57
5959 7726 2.885266 GGAGTACTAGCATCCGTCATGA 59.115 50.000 0.00 0.00 33.80 3.07
6693 8506 5.066968 AGTTGTTTGTTGTCACGGAAAAT 57.933 34.783 0.00 0.00 0.00 1.82
6709 8522 4.530710 TGCTAACTACGATGGAGTTGTT 57.469 40.909 4.68 0.42 41.44 2.83
6964 8781 7.210174 TGGCATGAAGTATATCTTGTACAGAC 58.790 38.462 0.00 0.00 36.40 3.51
7797 11018 1.891919 TTGTGTCTTCTGGCGGTGC 60.892 57.895 0.00 0.00 0.00 5.01
7798 11019 0.813610 TGTTGTGTCTTCTGGCGGTG 60.814 55.000 0.00 0.00 0.00 4.94
7799 11020 0.107410 TTGTTGTGTCTTCTGGCGGT 60.107 50.000 0.00 0.00 0.00 5.68
7800 11021 1.021202 TTTGTTGTGTCTTCTGGCGG 58.979 50.000 0.00 0.00 0.00 6.13
7801 11022 2.159448 TGTTTTGTTGTGTCTTCTGGCG 60.159 45.455 0.00 0.00 0.00 5.69
7802 11023 3.502191 TGTTTTGTTGTGTCTTCTGGC 57.498 42.857 0.00 0.00 0.00 4.85
7803 11024 5.410067 ACAATGTTTTGTTGTGTCTTCTGG 58.590 37.500 0.00 0.00 43.57 3.86
7813 11034 8.594160 CGCACACAGCTAACAATGTTTTGTTG 62.594 42.308 3.17 8.72 46.36 3.33
7814 11035 6.684461 CGCACACAGCTAACAATGTTTTGTT 61.684 40.000 3.17 8.89 46.13 2.83
7815 11036 4.111916 GCACACAGCTAACAATGTTTTGT 58.888 39.130 3.17 4.50 43.47 2.83
7816 11037 3.180189 CGCACACAGCTAACAATGTTTTG 59.820 43.478 3.17 3.87 42.61 2.44
7817 11038 3.371168 CGCACACAGCTAACAATGTTTT 58.629 40.909 3.17 0.00 42.61 2.43
7818 11039 2.287547 CCGCACACAGCTAACAATGTTT 60.288 45.455 3.17 0.00 42.61 2.83
7819 11040 1.266718 CCGCACACAGCTAACAATGTT 59.733 47.619 3.43 3.43 42.61 2.71
7820 11041 0.874390 CCGCACACAGCTAACAATGT 59.126 50.000 0.00 0.00 42.61 2.71
7821 11042 0.454957 GCCGCACACAGCTAACAATG 60.455 55.000 0.00 0.00 42.61 2.82
7822 11043 0.888736 TGCCGCACACAGCTAACAAT 60.889 50.000 0.00 0.00 42.61 2.71
7823 11044 1.524849 TGCCGCACACAGCTAACAA 60.525 52.632 0.00 0.00 42.61 2.83
7824 11045 2.110006 TGCCGCACACAGCTAACA 59.890 55.556 0.00 0.00 42.61 2.41
7843 11064 0.395724 GGCATAAACTGTGGAGGGGG 60.396 60.000 0.00 0.00 0.00 5.40
7844 11065 0.625849 AGGCATAAACTGTGGAGGGG 59.374 55.000 0.00 0.00 0.00 4.79
7845 11066 1.408822 GGAGGCATAAACTGTGGAGGG 60.409 57.143 0.00 0.00 0.00 4.30
7846 11067 1.743772 CGGAGGCATAAACTGTGGAGG 60.744 57.143 0.00 0.00 0.00 4.30
7847 11068 1.656652 CGGAGGCATAAACTGTGGAG 58.343 55.000 0.00 0.00 0.00 3.86
7848 11069 0.251916 CCGGAGGCATAAACTGTGGA 59.748 55.000 0.00 0.00 46.14 4.02
7849 11070 2.780595 CCGGAGGCATAAACTGTGG 58.219 57.895 0.00 0.00 46.14 4.17
7861 11082 4.465673 CACTACGTGAAAATGACCGGAGG 61.466 52.174 9.46 0.00 46.14 4.30
7862 11083 2.666508 CACTACGTGAAAATGACCGGAG 59.333 50.000 9.46 0.00 37.30 4.63
7863 11084 2.679450 CACTACGTGAAAATGACCGGA 58.321 47.619 9.46 0.00 35.23 5.14
7864 11085 1.127951 GCACTACGTGAAAATGACCGG 59.872 52.381 0.00 0.00 35.23 5.28
7865 11086 2.066262 AGCACTACGTGAAAATGACCG 58.934 47.619 0.00 0.00 35.23 4.79
7866 11087 4.092968 CCTAAGCACTACGTGAAAATGACC 59.907 45.833 0.00 0.00 35.23 4.02
7867 11088 4.435651 GCCTAAGCACTACGTGAAAATGAC 60.436 45.833 0.00 0.00 39.53 3.06
7868 11089 3.682858 GCCTAAGCACTACGTGAAAATGA 59.317 43.478 0.00 0.00 39.53 2.57
7869 11090 3.483574 CGCCTAAGCACTACGTGAAAATG 60.484 47.826 0.00 0.00 39.83 2.32
7870 11091 2.671396 CGCCTAAGCACTACGTGAAAAT 59.329 45.455 0.00 0.00 39.83 1.82
7871 11092 2.063266 CGCCTAAGCACTACGTGAAAA 58.937 47.619 0.00 0.00 39.83 2.29
7872 11093 1.270274 TCGCCTAAGCACTACGTGAAA 59.730 47.619 0.00 0.00 39.83 2.69
7873 11094 0.883153 TCGCCTAAGCACTACGTGAA 59.117 50.000 0.00 0.00 39.83 3.18
7874 11095 0.883153 TTCGCCTAAGCACTACGTGA 59.117 50.000 0.00 0.00 39.83 4.35
7875 11096 1.269166 CTTCGCCTAAGCACTACGTG 58.731 55.000 0.00 0.00 39.83 4.49
7876 11097 3.715854 CTTCGCCTAAGCACTACGT 57.284 52.632 0.00 0.00 39.83 3.57
7889 11110 1.591863 GATCCACGTAGGGCTTCGC 60.592 63.158 0.00 0.00 38.24 4.70
7890 11111 0.527817 GTGATCCACGTAGGGCTTCG 60.528 60.000 0.00 0.00 38.24 3.79
7891 11112 0.824759 AGTGATCCACGTAGGGCTTC 59.175 55.000 0.00 0.00 39.64 3.86
7892 11113 1.207329 GAAGTGATCCACGTAGGGCTT 59.793 52.381 0.00 0.00 39.64 4.35
7893 11114 0.824759 GAAGTGATCCACGTAGGGCT 59.175 55.000 0.00 0.00 39.64 5.19
7894 11115 0.535335 TGAAGTGATCCACGTAGGGC 59.465 55.000 0.00 0.00 39.64 5.19
7895 11116 1.134788 GGTGAAGTGATCCACGTAGGG 60.135 57.143 0.00 0.00 39.64 3.53
7896 11117 1.548719 TGGTGAAGTGATCCACGTAGG 59.451 52.381 0.00 0.00 39.64 3.18
7897 11118 3.119137 TGATGGTGAAGTGATCCACGTAG 60.119 47.826 0.00 0.00 39.64 3.51
7898 11119 2.829120 TGATGGTGAAGTGATCCACGTA 59.171 45.455 0.00 0.00 39.64 3.57
7899 11120 1.623311 TGATGGTGAAGTGATCCACGT 59.377 47.619 0.00 0.00 39.64 4.49
7900 11121 2.002586 GTGATGGTGAAGTGATCCACG 58.997 52.381 0.00 0.00 39.64 4.94
7901 11122 2.290260 TGGTGATGGTGAAGTGATCCAC 60.290 50.000 0.00 0.00 33.91 4.02
7902 11123 1.984424 TGGTGATGGTGAAGTGATCCA 59.016 47.619 0.00 0.00 35.64 3.41
7903 11124 2.290260 TGTGGTGATGGTGAAGTGATCC 60.290 50.000 0.00 0.00 0.00 3.36
7904 11125 2.744202 GTGTGGTGATGGTGAAGTGATC 59.256 50.000 0.00 0.00 0.00 2.92
7905 11126 2.553028 GGTGTGGTGATGGTGAAGTGAT 60.553 50.000 0.00 0.00 0.00 3.06
7906 11127 1.202758 GGTGTGGTGATGGTGAAGTGA 60.203 52.381 0.00 0.00 0.00 3.41
7907 11128 1.238439 GGTGTGGTGATGGTGAAGTG 58.762 55.000 0.00 0.00 0.00 3.16
7908 11129 0.250295 CGGTGTGGTGATGGTGAAGT 60.250 55.000 0.00 0.00 0.00 3.01
7909 11130 0.250295 ACGGTGTGGTGATGGTGAAG 60.250 55.000 0.00 0.00 0.00 3.02
7910 11131 0.250124 GACGGTGTGGTGATGGTGAA 60.250 55.000 0.00 0.00 0.00 3.18
7911 11132 1.369692 GACGGTGTGGTGATGGTGA 59.630 57.895 0.00 0.00 0.00 4.02
7912 11133 2.027073 CGACGGTGTGGTGATGGTG 61.027 63.158 0.00 0.00 0.00 4.17
7913 11134 1.180456 TACGACGGTGTGGTGATGGT 61.180 55.000 0.00 0.00 0.00 3.55
7914 11135 0.734942 GTACGACGGTGTGGTGATGG 60.735 60.000 0.00 0.00 0.00 3.51
7915 11136 0.242825 AGTACGACGGTGTGGTGATG 59.757 55.000 0.00 0.00 0.00 3.07
7916 11137 0.242825 CAGTACGACGGTGTGGTGAT 59.757 55.000 0.00 0.00 0.00 3.06
7917 11138 0.818852 TCAGTACGACGGTGTGGTGA 60.819 55.000 0.00 0.00 0.00 4.02
7918 11139 0.662374 GTCAGTACGACGGTGTGGTG 60.662 60.000 0.00 0.00 34.19 4.17
7919 11140 1.656441 GTCAGTACGACGGTGTGGT 59.344 57.895 0.00 0.00 34.19 4.16
7920 11141 4.546637 GTCAGTACGACGGTGTGG 57.453 61.111 0.00 0.00 34.19 4.17
7927 11148 2.162008 GGGAGAGTTCTGTCAGTACGAC 59.838 54.545 9.87 9.87 45.61 4.34
7928 11149 2.040012 AGGGAGAGTTCTGTCAGTACGA 59.960 50.000 0.00 0.00 0.00 3.43
7929 11150 2.420722 GAGGGAGAGTTCTGTCAGTACG 59.579 54.545 0.00 0.00 0.00 3.67
7930 11151 2.420722 CGAGGGAGAGTTCTGTCAGTAC 59.579 54.545 1.51 1.51 0.00 2.73
7931 11152 2.305052 TCGAGGGAGAGTTCTGTCAGTA 59.695 50.000 0.00 0.00 0.00 2.74
7932 11153 1.074084 TCGAGGGAGAGTTCTGTCAGT 59.926 52.381 0.00 0.00 0.00 3.41
7933 11154 1.470890 GTCGAGGGAGAGTTCTGTCAG 59.529 57.143 0.00 0.00 0.00 3.51
7934 11155 1.202891 TGTCGAGGGAGAGTTCTGTCA 60.203 52.381 0.00 0.00 0.00 3.58
7935 11156 1.200484 GTGTCGAGGGAGAGTTCTGTC 59.800 57.143 0.00 0.00 0.00 3.51
7936 11157 1.202952 AGTGTCGAGGGAGAGTTCTGT 60.203 52.381 0.00 0.00 0.00 3.41
7937 11158 1.540267 AGTGTCGAGGGAGAGTTCTG 58.460 55.000 0.00 0.00 0.00 3.02
7938 11159 2.296073 AAGTGTCGAGGGAGAGTTCT 57.704 50.000 0.00 0.00 0.00 3.01
7939 11160 3.506844 AGTAAAGTGTCGAGGGAGAGTTC 59.493 47.826 0.00 0.00 29.51 3.01
7940 11161 3.498334 AGTAAAGTGTCGAGGGAGAGTT 58.502 45.455 0.00 0.00 30.92 3.01
7941 11162 3.157750 AGTAAAGTGTCGAGGGAGAGT 57.842 47.619 0.00 0.00 0.00 3.24
7942 11163 4.515361 TCTAGTAAAGTGTCGAGGGAGAG 58.485 47.826 0.00 0.00 0.00 3.20
7943 11164 4.564782 TCTAGTAAAGTGTCGAGGGAGA 57.435 45.455 0.00 0.00 0.00 3.71
7944 11165 4.882427 TGATCTAGTAAAGTGTCGAGGGAG 59.118 45.833 0.00 0.00 0.00 4.30
7945 11166 4.851843 TGATCTAGTAAAGTGTCGAGGGA 58.148 43.478 0.00 0.00 0.00 4.20
7946 11167 5.357314 TCTTGATCTAGTAAAGTGTCGAGGG 59.643 44.000 4.06 0.00 0.00 4.30
7947 11168 6.094325 ACTCTTGATCTAGTAAAGTGTCGAGG 59.906 42.308 4.06 0.00 0.00 4.63
7948 11169 7.079182 ACTCTTGATCTAGTAAAGTGTCGAG 57.921 40.000 4.06 0.00 0.00 4.04
7949 11170 7.450124 AACTCTTGATCTAGTAAAGTGTCGA 57.550 36.000 4.06 0.00 29.87 4.20
7950 11171 7.808381 TCAAACTCTTGATCTAGTAAAGTGTCG 59.192 37.037 4.06 0.00 36.62 4.35
7951 11172 9.134734 CTCAAACTCTTGATCTAGTAAAGTGTC 57.865 37.037 4.06 0.00 40.78 3.67
7952 11173 8.091449 CCTCAAACTCTTGATCTAGTAAAGTGT 58.909 37.037 4.06 0.00 40.78 3.55
7953 11174 8.307483 TCCTCAAACTCTTGATCTAGTAAAGTG 58.693 37.037 4.06 0.00 40.78 3.16
7954 11175 8.423906 TCCTCAAACTCTTGATCTAGTAAAGT 57.576 34.615 4.06 0.00 40.78 2.66
7955 11176 9.145865 GTTCCTCAAACTCTTGATCTAGTAAAG 57.854 37.037 4.06 0.00 40.78 1.85
7956 11177 7.813148 CGTTCCTCAAACTCTTGATCTAGTAAA 59.187 37.037 4.06 0.00 40.78 2.01
7957 11178 7.039923 ACGTTCCTCAAACTCTTGATCTAGTAA 60.040 37.037 4.06 0.00 40.78 2.24
7958 11179 6.433404 ACGTTCCTCAAACTCTTGATCTAGTA 59.567 38.462 4.06 0.00 40.78 1.82
7959 11180 5.244178 ACGTTCCTCAAACTCTTGATCTAGT 59.756 40.000 4.06 0.00 40.78 2.57
7960 11181 5.715070 ACGTTCCTCAAACTCTTGATCTAG 58.285 41.667 0.00 0.00 40.78 2.43
7961 11182 5.243060 TGACGTTCCTCAAACTCTTGATCTA 59.757 40.000 0.00 0.00 40.78 1.98
7962 11183 4.039245 TGACGTTCCTCAAACTCTTGATCT 59.961 41.667 0.00 0.00 40.78 2.75
7963 11184 4.307432 TGACGTTCCTCAAACTCTTGATC 58.693 43.478 0.00 0.00 40.78 2.92
7964 11185 4.336889 TGACGTTCCTCAAACTCTTGAT 57.663 40.909 0.00 0.00 40.78 2.57
7965 11186 3.812156 TGACGTTCCTCAAACTCTTGA 57.188 42.857 0.00 0.00 39.30 3.02
7966 11187 3.121944 CGATGACGTTCCTCAAACTCTTG 59.878 47.826 0.00 0.00 35.59 3.02
7967 11188 3.005472 TCGATGACGTTCCTCAAACTCTT 59.995 43.478 0.00 0.00 40.69 2.85
7968 11189 2.557056 TCGATGACGTTCCTCAAACTCT 59.443 45.455 0.00 0.00 40.69 3.24
7969 11190 2.917971 CTCGATGACGTTCCTCAAACTC 59.082 50.000 0.00 0.00 40.69 3.01
7970 11191 2.927014 GCTCGATGACGTTCCTCAAACT 60.927 50.000 0.00 0.00 40.69 2.66
7971 11192 1.390463 GCTCGATGACGTTCCTCAAAC 59.610 52.381 0.00 0.00 40.69 2.93
7972 11193 1.272490 AGCTCGATGACGTTCCTCAAA 59.728 47.619 0.00 0.00 40.69 2.69
7973 11194 0.888619 AGCTCGATGACGTTCCTCAA 59.111 50.000 0.00 0.00 40.69 3.02
7974 11195 0.452184 GAGCTCGATGACGTTCCTCA 59.548 55.000 0.00 0.00 40.69 3.86
7975 11196 0.452184 TGAGCTCGATGACGTTCCTC 59.548 55.000 9.64 0.00 40.69 3.71
7976 11197 0.888619 TTGAGCTCGATGACGTTCCT 59.111 50.000 9.64 0.00 40.69 3.36
7977 11198 0.992802 GTTGAGCTCGATGACGTTCC 59.007 55.000 7.00 0.00 40.69 3.62
7978 11199 1.698165 TGTTGAGCTCGATGACGTTC 58.302 50.000 7.00 0.00 40.69 3.95
7979 11200 1.995484 CATGTTGAGCTCGATGACGTT 59.005 47.619 7.00 0.00 40.69 3.99
7980 11201 1.067565 ACATGTTGAGCTCGATGACGT 60.068 47.619 20.96 11.12 40.69 4.34
7981 11202 1.322637 CACATGTTGAGCTCGATGACG 59.677 52.381 20.96 11.21 41.26 4.35
7982 11203 1.061711 GCACATGTTGAGCTCGATGAC 59.938 52.381 20.96 12.66 31.18 3.06
7983 11204 1.338011 TGCACATGTTGAGCTCGATGA 60.338 47.619 20.96 7.46 34.99 2.92
7984 11205 1.062148 CTGCACATGTTGAGCTCGATG 59.938 52.381 7.00 12.14 34.99 3.84
7985 11206 1.066645 TCTGCACATGTTGAGCTCGAT 60.067 47.619 7.00 0.00 34.99 3.59
7986 11207 0.318120 TCTGCACATGTTGAGCTCGA 59.682 50.000 9.64 3.88 34.99 4.04
7987 11208 1.136141 GTTCTGCACATGTTGAGCTCG 60.136 52.381 9.64 0.00 34.99 5.03
7988 11209 2.149578 AGTTCTGCACATGTTGAGCTC 58.850 47.619 6.82 6.82 34.99 4.09
7989 11210 2.149578 GAGTTCTGCACATGTTGAGCT 58.850 47.619 0.00 2.43 34.99 4.09
7990 11211 1.875514 TGAGTTCTGCACATGTTGAGC 59.124 47.619 0.00 0.00 34.50 4.26
7991 11212 4.534168 CTTTGAGTTCTGCACATGTTGAG 58.466 43.478 0.00 0.00 0.00 3.02
7992 11213 3.316029 CCTTTGAGTTCTGCACATGTTGA 59.684 43.478 0.00 0.00 0.00 3.18
7993 11214 3.067180 ACCTTTGAGTTCTGCACATGTTG 59.933 43.478 0.00 0.00 0.00 3.33
7994 11215 3.067180 CACCTTTGAGTTCTGCACATGTT 59.933 43.478 0.00 0.00 0.00 2.71
7995 11216 2.620115 CACCTTTGAGTTCTGCACATGT 59.380 45.455 0.00 0.00 0.00 3.21
7996 11217 2.620115 ACACCTTTGAGTTCTGCACATG 59.380 45.455 0.00 0.00 0.00 3.21
7997 11218 2.880890 GACACCTTTGAGTTCTGCACAT 59.119 45.455 0.00 0.00 0.00 3.21
7998 11219 2.288666 GACACCTTTGAGTTCTGCACA 58.711 47.619 0.00 0.00 0.00 4.57
7999 11220 1.261619 CGACACCTTTGAGTTCTGCAC 59.738 52.381 0.00 0.00 0.00 4.57
8000 11221 1.134521 ACGACACCTTTGAGTTCTGCA 60.135 47.619 0.00 0.00 0.00 4.41
8001 11222 1.583054 ACGACACCTTTGAGTTCTGC 58.417 50.000 0.00 0.00 0.00 4.26
8002 11223 2.724690 CGTACGACACCTTTGAGTTCTG 59.275 50.000 10.44 0.00 0.00 3.02
8003 11224 2.360165 ACGTACGACACCTTTGAGTTCT 59.640 45.455 24.41 0.00 0.00 3.01
8004 11225 2.735823 ACGTACGACACCTTTGAGTTC 58.264 47.619 24.41 0.00 0.00 3.01
8005 11226 2.877043 ACGTACGACACCTTTGAGTT 57.123 45.000 24.41 0.00 0.00 3.01
8006 11227 2.735823 GAACGTACGACACCTTTGAGT 58.264 47.619 24.41 0.00 0.00 3.41
8007 11228 1.712350 CGAACGTACGACACCTTTGAG 59.288 52.381 24.41 0.00 35.09 3.02
8008 11229 1.600164 CCGAACGTACGACACCTTTGA 60.600 52.381 24.41 0.00 35.09 2.69
8009 11230 0.780002 CCGAACGTACGACACCTTTG 59.220 55.000 24.41 8.96 35.09 2.77
8010 11231 0.385390 ACCGAACGTACGACACCTTT 59.615 50.000 24.41 3.96 35.09 3.11
8011 11232 0.318107 CACCGAACGTACGACACCTT 60.318 55.000 24.41 4.81 35.09 3.50
8012 11233 1.283793 CACCGAACGTACGACACCT 59.716 57.895 24.41 0.00 35.09 4.00
8013 11234 0.237235 TACACCGAACGTACGACACC 59.763 55.000 24.41 6.58 35.09 4.16
8014 11235 1.906966 CATACACCGAACGTACGACAC 59.093 52.381 24.41 11.22 35.09 3.67
8015 11236 1.803555 TCATACACCGAACGTACGACA 59.196 47.619 24.41 0.00 35.09 4.35
8016 11237 2.525750 TCATACACCGAACGTACGAC 57.474 50.000 24.41 14.09 35.09 4.34
8017 11238 2.285776 CGATCATACACCGAACGTACGA 60.286 50.000 24.41 0.00 35.09 3.43
8018 11239 2.031941 CGATCATACACCGAACGTACG 58.968 52.381 15.01 15.01 0.00 3.67
8019 11240 2.223340 ACCGATCATACACCGAACGTAC 60.223 50.000 0.00 0.00 0.00 3.67
8020 11241 2.016318 ACCGATCATACACCGAACGTA 58.984 47.619 0.00 0.00 0.00 3.57
8021 11242 0.813184 ACCGATCATACACCGAACGT 59.187 50.000 0.00 0.00 0.00 3.99
8022 11243 1.474017 GACCGATCATACACCGAACG 58.526 55.000 0.00 0.00 0.00 3.95
8023 11244 1.064505 TCGACCGATCATACACCGAAC 59.935 52.381 0.00 0.00 0.00 3.95
8024 11245 1.381522 TCGACCGATCATACACCGAA 58.618 50.000 0.00 0.00 0.00 4.30
8025 11246 1.381522 TTCGACCGATCATACACCGA 58.618 50.000 0.00 0.00 0.00 4.69
8026 11247 1.850441 GTTTCGACCGATCATACACCG 59.150 52.381 0.00 0.00 0.00 4.94
8027 11248 1.850441 CGTTTCGACCGATCATACACC 59.150 52.381 0.00 0.00 0.00 4.16
8028 11249 2.782192 CTCGTTTCGACCGATCATACAC 59.218 50.000 6.81 0.00 33.27 2.90
8029 11250 2.679336 TCTCGTTTCGACCGATCATACA 59.321 45.455 6.81 0.00 33.27 2.29
8030 11251 3.329743 TCTCGTTTCGACCGATCATAC 57.670 47.619 6.81 0.00 33.27 2.39
8031 11252 3.624410 TCTTCTCGTTTCGACCGATCATA 59.376 43.478 6.81 0.00 33.27 2.15
8032 11253 2.422479 TCTTCTCGTTTCGACCGATCAT 59.578 45.455 6.81 0.00 33.27 2.45
8033 11254 1.808343 TCTTCTCGTTTCGACCGATCA 59.192 47.619 6.81 0.00 33.27 2.92
8034 11255 2.539346 TCTTCTCGTTTCGACCGATC 57.461 50.000 6.81 0.00 33.27 3.69
8035 11256 2.228343 ACTTCTTCTCGTTTCGACCGAT 59.772 45.455 6.81 0.00 33.27 4.18
8036 11257 1.605710 ACTTCTTCTCGTTTCGACCGA 59.394 47.619 6.25 6.25 0.00 4.69
8037 11258 2.047679 ACTTCTTCTCGTTTCGACCG 57.952 50.000 0.00 0.00 0.00 4.79
8038 11259 2.404361 CGAACTTCTTCTCGTTTCGACC 59.596 50.000 0.00 0.00 0.00 4.79
8039 11260 3.117669 GTCGAACTTCTTCTCGTTTCGAC 59.882 47.826 16.54 16.54 36.98 4.20
8040 11261 3.003068 AGTCGAACTTCTTCTCGTTTCGA 59.997 43.478 0.84 0.84 36.46 3.71
8041 11262 3.298317 AGTCGAACTTCTTCTCGTTTCG 58.702 45.455 0.00 0.00 36.46 3.46
8042 11263 5.210715 TGTAGTCGAACTTCTTCTCGTTTC 58.789 41.667 0.00 0.00 36.46 2.78
8043 11264 5.179045 TGTAGTCGAACTTCTTCTCGTTT 57.821 39.130 0.00 0.00 36.46 3.60
8044 11265 4.825546 TGTAGTCGAACTTCTTCTCGTT 57.174 40.909 0.00 0.00 36.46 3.85
8045 11266 4.972201 GATGTAGTCGAACTTCTTCTCGT 58.028 43.478 0.00 0.00 36.46 4.18
8059 11280 1.121240 CGCGGTTGATCGATGTAGTC 58.879 55.000 0.54 0.00 0.00 2.59
8060 11281 0.454600 ACGCGGTTGATCGATGTAGT 59.545 50.000 12.47 0.00 0.00 2.73
8061 11282 1.255342 CAACGCGGTTGATCGATGTAG 59.745 52.381 12.47 0.00 45.28 2.74
8062 11283 1.273688 CAACGCGGTTGATCGATGTA 58.726 50.000 12.47 0.00 45.28 2.29
8063 11284 0.669318 ACAACGCGGTTGATCGATGT 60.669 50.000 22.26 5.98 45.28 3.06
8064 11285 0.025001 GACAACGCGGTTGATCGATG 59.975 55.000 22.26 5.41 45.28 3.84
8065 11286 0.389296 TGACAACGCGGTTGATCGAT 60.389 50.000 22.26 0.00 45.28 3.59
8066 11287 0.597898 TTGACAACGCGGTTGATCGA 60.598 50.000 22.26 14.44 45.28 3.59
8067 11288 0.233590 TTTGACAACGCGGTTGATCG 59.766 50.000 22.26 2.83 45.28 3.69
8068 11289 1.670326 GTTTGACAACGCGGTTGATC 58.330 50.000 22.26 16.61 45.28 2.92
8069 11290 3.837669 GTTTGACAACGCGGTTGAT 57.162 47.368 22.26 10.59 45.28 2.57
8078 11299 4.616009 CGAAAGCAGAAGCGTTTGACAAC 61.616 47.826 0.00 0.00 43.64 3.32
8079 11300 2.538737 CGAAAGCAGAAGCGTTTGACAA 60.539 45.455 0.00 0.00 43.64 3.18
8080 11301 1.003972 CGAAAGCAGAAGCGTTTGACA 60.004 47.619 0.00 0.00 43.64 3.58
8081 11302 1.660333 CCGAAAGCAGAAGCGTTTGAC 60.660 52.381 5.19 0.00 43.64 3.18
8082 11303 0.586319 CCGAAAGCAGAAGCGTTTGA 59.414 50.000 5.19 0.00 43.64 2.69
8087 11308 2.635856 CGTAGACCGAAAGCAGAAGCG 61.636 57.143 0.00 0.00 42.50 4.68
8088 11309 0.992802 CGTAGACCGAAAGCAGAAGC 59.007 55.000 0.00 0.00 39.56 3.86
8089 11310 2.520979 CTCGTAGACCGAAAGCAGAAG 58.479 52.381 0.00 0.00 46.75 2.85
8090 11311 1.201647 CCTCGTAGACCGAAAGCAGAA 59.798 52.381 0.00 0.00 46.75 3.02
8091 11312 0.809385 CCTCGTAGACCGAAAGCAGA 59.191 55.000 0.00 0.00 46.75 4.26
8092 11313 0.179134 CCCTCGTAGACCGAAAGCAG 60.179 60.000 0.00 0.00 46.75 4.24
8093 11314 0.896940 ACCCTCGTAGACCGAAAGCA 60.897 55.000 0.00 0.00 46.75 3.91
8094 11315 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
8095 11316 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
8096 11317 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
8097 11318 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
8098 11319 0.821517 TACGTACCCTCGTAGACCGA 59.178 55.000 0.00 0.00 45.00 4.69
8099 11320 3.362581 TACGTACCCTCGTAGACCG 57.637 57.895 0.00 0.00 43.80 4.79
8104 11325 2.028112 AGTGTGTCTACGTACCCTCGTA 60.028 50.000 0.00 0.00 43.80 3.43
8105 11326 1.160137 GTGTGTCTACGTACCCTCGT 58.840 55.000 0.00 0.00 45.97 4.18
8106 11327 1.396301 GAGTGTGTCTACGTACCCTCG 59.604 57.143 0.00 0.00 0.00 4.63
8107 11328 2.677337 GAGAGTGTGTCTACGTACCCTC 59.323 54.545 0.00 0.00 34.71 4.30
8108 11329 2.617532 GGAGAGTGTGTCTACGTACCCT 60.618 54.545 0.00 0.00 34.71 4.34
8109 11330 1.742268 GGAGAGTGTGTCTACGTACCC 59.258 57.143 0.00 0.00 34.71 3.69
8110 11331 1.742268 GGGAGAGTGTGTCTACGTACC 59.258 57.143 0.00 0.00 36.91 3.34
8111 11332 1.742268 GGGGAGAGTGTGTCTACGTAC 59.258 57.143 0.00 0.00 36.91 3.67
8112 11333 1.632409 AGGGGAGAGTGTGTCTACGTA 59.368 52.381 0.00 0.00 36.91 3.57
8113 11334 0.404812 AGGGGAGAGTGTGTCTACGT 59.595 55.000 0.00 0.00 36.91 3.57
8114 11335 1.096416 GAGGGGAGAGTGTGTCTACG 58.904 60.000 0.00 0.00 36.91 3.51
8115 11336 2.371306 GAGAGGGGAGAGTGTGTCTAC 58.629 57.143 0.00 0.00 34.71 2.59
8116 11337 1.065345 CGAGAGGGGAGAGTGTGTCTA 60.065 57.143 0.00 0.00 34.71 2.59
8117 11338 0.322997 CGAGAGGGGAGAGTGTGTCT 60.323 60.000 0.00 0.00 38.71 3.41
8118 11339 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
8119 11340 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
8120 11341 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
8121 11342 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
8122 11343 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
8123 11344 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
8124 11345 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
8125 11346 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
8126 11347 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
8127 11348 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
8128 11349 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
8129 11350 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
8130 11351 2.522836 AGATGCATAGCAACGAGAGG 57.477 50.000 0.00 0.00 43.62 3.69
8131 11352 3.715495 AGAAGATGCATAGCAACGAGAG 58.285 45.455 0.00 0.00 43.62 3.20
8132 11353 3.808466 AGAAGATGCATAGCAACGAGA 57.192 42.857 0.00 0.00 43.62 4.04
8133 11354 4.864633 TCTAGAAGATGCATAGCAACGAG 58.135 43.478 0.00 0.00 43.62 4.18
8134 11355 4.918810 TCTAGAAGATGCATAGCAACGA 57.081 40.909 0.00 0.00 43.62 3.85
8135 11356 6.616017 TCTATCTAGAAGATGCATAGCAACG 58.384 40.000 0.00 0.00 43.62 4.10
8136 11357 8.469200 AGATCTATCTAGAAGATGCATAGCAAC 58.531 37.037 17.03 0.00 37.77 4.17
8137 11358 8.592529 AGATCTATCTAGAAGATGCATAGCAA 57.407 34.615 17.03 0.00 37.77 3.91
8138 11359 8.468399 CAAGATCTATCTAGAAGATGCATAGCA 58.532 37.037 17.03 0.00 38.57 3.49
8139 11360 7.436080 GCAAGATCTATCTAGAAGATGCATAGC 59.564 40.741 17.03 11.67 37.63 2.97
8140 11361 7.644945 CGCAAGATCTATCTAGAAGATGCATAG 59.355 40.741 17.03 5.41 37.60 2.23
8141 11362 7.121907 ACGCAAGATCTATCTAGAAGATGCATA 59.878 37.037 17.03 0.00 37.60 3.14
8142 11363 6.071447 ACGCAAGATCTATCTAGAAGATGCAT 60.071 38.462 17.03 0.00 37.60 3.96
8143 11364 5.242615 ACGCAAGATCTATCTAGAAGATGCA 59.757 40.000 17.03 0.00 37.60 3.96
8144 11365 5.572511 CACGCAAGATCTATCTAGAAGATGC 59.427 44.000 17.03 15.04 36.70 3.91
8145 11366 6.907741 TCACGCAAGATCTATCTAGAAGATG 58.092 40.000 17.03 9.37 36.70 2.90
8146 11367 6.349280 GCTCACGCAAGATCTATCTAGAAGAT 60.349 42.308 13.81 13.81 38.77 2.40
8147 11368 5.049060 GCTCACGCAAGATCTATCTAGAAGA 60.049 44.000 0.00 1.80 43.62 2.87
8148 11369 5.153513 GCTCACGCAAGATCTATCTAGAAG 58.846 45.833 0.00 0.00 43.62 2.85
8149 11370 4.319839 CGCTCACGCAAGATCTATCTAGAA 60.320 45.833 0.00 0.00 43.62 2.10
8150 11371 3.187432 CGCTCACGCAAGATCTATCTAGA 59.813 47.826 0.00 0.00 43.62 2.43
8151 11372 3.058570 ACGCTCACGCAAGATCTATCTAG 60.059 47.826 0.00 0.00 45.53 2.43
8152 11373 2.879026 ACGCTCACGCAAGATCTATCTA 59.121 45.455 0.00 0.00 45.53 1.98
8153 11374 1.678627 ACGCTCACGCAAGATCTATCT 59.321 47.619 0.00 0.00 45.53 1.98
8154 11375 2.126914 ACGCTCACGCAAGATCTATC 57.873 50.000 0.00 0.00 45.53 2.08
8155 11376 2.030717 CCTACGCTCACGCAAGATCTAT 60.031 50.000 0.00 0.00 45.53 1.98
8156 11377 1.333931 CCTACGCTCACGCAAGATCTA 59.666 52.381 0.00 0.00 45.53 1.98
8157 11378 0.101399 CCTACGCTCACGCAAGATCT 59.899 55.000 0.00 0.00 45.53 2.75
8158 11379 0.100682 TCCTACGCTCACGCAAGATC 59.899 55.000 0.00 0.00 45.53 2.75
8159 11380 0.530744 TTCCTACGCTCACGCAAGAT 59.469 50.000 0.00 0.00 45.53 2.40
8160 11381 0.530744 ATTCCTACGCTCACGCAAGA 59.469 50.000 0.00 0.00 45.53 3.02
8161 11382 1.359848 AATTCCTACGCTCACGCAAG 58.640 50.000 0.00 0.00 45.53 4.01
8162 11383 1.803334 AAATTCCTACGCTCACGCAA 58.197 45.000 0.00 0.00 45.53 4.85
8163 11384 1.803334 AAAATTCCTACGCTCACGCA 58.197 45.000 0.00 0.00 45.53 5.24
8164 11385 2.894307 AAAAATTCCTACGCTCACGC 57.106 45.000 0.00 0.00 45.53 5.34
8181 11402 7.308469 GGGAAACATAGCATGCAATTTCAAAAA 60.308 33.333 21.98 0.00 29.42 1.94
8182 11403 6.149142 GGGAAACATAGCATGCAATTTCAAAA 59.851 34.615 21.98 0.00 29.42 2.44
8183 11404 5.642919 GGGAAACATAGCATGCAATTTCAAA 59.357 36.000 21.98 0.00 29.42 2.69
8184 11405 5.177326 GGGAAACATAGCATGCAATTTCAA 58.823 37.500 21.98 0.00 29.42 2.69
8185 11406 4.222366 TGGGAAACATAGCATGCAATTTCA 59.778 37.500 21.98 6.82 29.42 2.69
8186 11407 4.757594 TGGGAAACATAGCATGCAATTTC 58.242 39.130 21.98 20.39 0.00 2.17
8187 11408 4.822685 TGGGAAACATAGCATGCAATTT 57.177 36.364 21.98 13.67 0.00 1.82
8188 11409 4.020396 TGTTGGGAAACATAGCATGCAATT 60.020 37.500 21.98 6.80 0.00 2.32
8189 11410 3.514706 TGTTGGGAAACATAGCATGCAAT 59.485 39.130 21.98 1.90 0.00 3.56
8190 11411 2.896044 TGTTGGGAAACATAGCATGCAA 59.104 40.909 21.98 0.00 0.00 4.08
8191 11412 2.523245 TGTTGGGAAACATAGCATGCA 58.477 42.857 21.98 6.36 0.00 3.96
8192 11413 3.591196 TTGTTGGGAAACATAGCATGC 57.409 42.857 10.51 10.51 32.01 4.06
8193 11414 4.931002 CCTTTTGTTGGGAAACATAGCATG 59.069 41.667 0.00 0.00 32.01 4.06
8194 11415 5.151297 CCTTTTGTTGGGAAACATAGCAT 57.849 39.130 0.00 0.00 32.01 3.79
8195 11416 4.599047 CCTTTTGTTGGGAAACATAGCA 57.401 40.909 0.00 0.00 32.01 3.49
8205 11426 1.801242 AACCCTTCCCTTTTGTTGGG 58.199 50.000 0.00 0.00 45.90 4.12
8206 11427 2.158827 CCAAACCCTTCCCTTTTGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
8207 11428 2.769095 TCCAAACCCTTCCCTTTTGTTG 59.231 45.455 0.00 0.00 0.00 3.33
8208 11429 3.038280 CTCCAAACCCTTCCCTTTTGTT 58.962 45.455 0.00 0.00 0.00 2.83
8209 11430 2.246327 TCTCCAAACCCTTCCCTTTTGT 59.754 45.455 0.00 0.00 0.00 2.83
8210 11431 2.957474 TCTCCAAACCCTTCCCTTTTG 58.043 47.619 0.00 0.00 0.00 2.44
8211 11432 3.576861 CTTCTCCAAACCCTTCCCTTTT 58.423 45.455 0.00 0.00 0.00 2.27
8380 11601 2.344592 TGGTGGGATAGACAAGGTTGT 58.655 47.619 0.00 0.00 45.65 3.32
8410 11631 0.476338 TGTAGCAAGCCCTTTGTGGA 59.524 50.000 0.00 0.00 39.08 4.02
8426 11647 5.501413 CTTCGTTAAGATCTACGCGAGTGTA 60.501 44.000 15.93 0.00 39.03 2.90
8427 11648 4.727162 CTTCGTTAAGATCTACGCGAGTGT 60.727 45.833 15.93 0.00 39.03 3.55
8434 11655 4.025396 TCGCCTACTTCGTTAAGATCTACG 60.025 45.833 11.09 11.09 39.03 3.51
8444 11665 1.765230 AGGAGATCGCCTACTTCGTT 58.235 50.000 17.38 0.00 36.22 3.85
8468 11689 6.605594 TGGAGTTGAACCAAGAAGTTTGTAAT 59.394 34.615 0.00 0.00 34.25 1.89
8671 11901 4.280677 CCCAAGTTGCTTTCCACTCAAATA 59.719 41.667 0.00 0.00 0.00 1.40
8846 12077 2.790433 TGGATTTTGTGTGGAGGCTAC 58.210 47.619 0.00 0.00 0.00 3.58
8878 12109 4.324254 GGTCCCACCAAGATGAGTCAAATA 60.324 45.833 0.00 0.00 38.42 1.40
8983 12215 1.153168 CCCTAGCACATTGGTCCCG 60.153 63.158 0.00 0.00 0.00 5.14
9013 12245 2.203070 GGCGCCACCGAGATGATT 60.203 61.111 24.80 0.00 36.29 2.57
9097 12331 2.350522 GAGTTGTGCAATCGGTCTCAT 58.649 47.619 0.00 0.00 0.00 2.90
9222 12457 3.245797 CCGAGTTCATATGACATAGCCG 58.754 50.000 4.48 3.90 0.00 5.52
9273 12508 5.188751 TGTCCAAAACCAAAAATCCAACTCT 59.811 36.000 0.00 0.00 0.00 3.24
9282 12517 7.446625 CCATCCAAATATGTCCAAAACCAAAAA 59.553 33.333 0.00 0.00 0.00 1.94
9370 12608 6.424032 ACTATTAAAAGGGGATGAGGTGTTC 58.576 40.000 0.00 0.00 0.00 3.18
9409 12647 3.956848 TGATCCAAGATCACATCGAGTCT 59.043 43.478 3.17 0.00 0.00 3.24
9473 12711 3.373110 GGACCCCTCAAAATGCTAAGGAT 60.373 47.826 0.00 0.00 0.00 3.24
9504 12742 0.324460 TGATTGGCATGGCATGGACA 60.324 50.000 27.48 16.49 0.00 4.02
9590 12833 3.756963 GTGAAACTAATCCTTGGGTGGTC 59.243 47.826 0.00 0.00 0.00 4.02
9609 12852 5.011943 CCAAAAATGGGGAGATTGAAAGTGA 59.988 40.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.