Multiple sequence alignment - TraesCS4A01G082100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G082100 chr4A 100.000 6270 0 0 1 6270 85208379 85202110 0.000000e+00 11579
1 TraesCS4A01G082100 chr4D 96.514 2754 68 14 861 3609 379347934 379350664 0.000000e+00 4529
2 TraesCS4A01G082100 chr4D 92.913 2554 127 30 3608 6139 379350723 379353244 0.000000e+00 3664
3 TraesCS4A01G082100 chr4B 89.581 3244 203 54 467 3609 466588360 466591569 0.000000e+00 3993
4 TraesCS4A01G082100 chr4B 93.031 2181 107 20 3608 5775 466591628 466593776 0.000000e+00 3144
5 TraesCS4A01G082100 chr4B 83.871 186 26 4 5949 6132 466636761 466636944 2.320000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G082100 chr4A 85202110 85208379 6269 True 11579.0 11579 100.0000 1 6270 1 chr4A.!!$R1 6269
1 TraesCS4A01G082100 chr4D 379347934 379353244 5310 False 4096.5 4529 94.7135 861 6139 2 chr4D.!!$F1 5278
2 TraesCS4A01G082100 chr4B 466588360 466593776 5416 False 3568.5 3993 91.3060 467 5775 2 chr4B.!!$F2 5308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 841 0.034337 AAAAGGCCGAAGAGCACGTA 59.966 50.000 0.00 0.0 0.00 3.57 F
819 888 0.034896 CCCACATGTATACGGGCCTC 59.965 60.000 0.84 0.0 0.00 4.70 F
1689 1763 0.108186 TTGTGGAGCAGGCGATACAG 60.108 55.000 0.00 0.0 0.00 2.74 F
2545 2628 0.681175 GGAACCCACTGCAAAGCATT 59.319 50.000 0.00 0.0 38.13 3.56 F
2754 2837 0.732880 CACGTGGTCTGCCTCTAACG 60.733 60.000 7.95 0.0 37.09 3.18 F
3185 3268 1.134560 GTCTATCCCAGCGACTTCGTT 59.865 52.381 0.00 0.0 42.22 3.85 F
4287 4461 1.308047 TTGGCATACATGATGACCGC 58.692 50.000 0.00 0.0 43.89 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1770 1.912371 GACACTTTGGCAGCGGCTAC 61.912 60.000 9.17 0.00 40.87 3.58 R
2420 2503 3.111853 TCACGAGCTGTTGAAGTGAAT 57.888 42.857 0.00 0.00 38.66 2.57 R
3096 3179 1.207791 GGGCTGAGGAGAGGATTTCA 58.792 55.000 0.00 0.00 0.00 2.69 R
4231 4404 2.816087 CAATCTCCATTCCATAAGCGGG 59.184 50.000 0.00 0.00 0.00 6.13 R
4277 4451 2.961526 AAAGACTACGCGGTCATCAT 57.038 45.000 12.47 0.00 38.57 2.45 R
4962 5139 0.170339 TCTGTATGGACGACACAGCG 59.830 55.000 0.00 0.00 39.60 5.18 R
5912 6118 0.178958 AGGAGACCGTGACCACTTCT 60.179 55.000 0.00 0.47 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 181 8.617761 TGTCACGTACATTTTTCTTAAAAACC 57.382 30.769 0.00 0.00 42.57 3.27
181 182 8.242053 TGTCACGTACATTTTTCTTAAAAACCA 58.758 29.630 0.00 0.00 42.57 3.67
182 183 9.240159 GTCACGTACATTTTTCTTAAAAACCAT 57.760 29.630 0.00 0.00 42.57 3.55
183 184 9.804758 TCACGTACATTTTTCTTAAAAACCATT 57.195 25.926 0.00 0.00 42.57 3.16
200 201 9.612066 AAAAACCATTTTAGATGTCACAAACAT 57.388 25.926 0.00 0.00 42.81 2.71
211 212 5.633996 TGTCACAAACATTTTTCGAATGC 57.366 34.783 0.00 0.00 31.20 3.56
212 213 5.347342 TGTCACAAACATTTTTCGAATGCT 58.653 33.333 0.00 0.00 31.20 3.79
213 214 5.231779 TGTCACAAACATTTTTCGAATGCTG 59.768 36.000 0.00 0.00 31.20 4.41
214 215 5.231991 GTCACAAACATTTTTCGAATGCTGT 59.768 36.000 0.00 0.00 31.28 4.40
215 216 5.458452 TCACAAACATTTTTCGAATGCTGTC 59.542 36.000 0.00 0.00 29.73 3.51
216 217 5.231779 CACAAACATTTTTCGAATGCTGTCA 59.768 36.000 0.00 0.00 29.73 3.58
217 218 5.809562 ACAAACATTTTTCGAATGCTGTCAA 59.190 32.000 0.00 0.00 0.00 3.18
218 219 5.888412 AACATTTTTCGAATGCTGTCAAC 57.112 34.783 0.00 0.00 0.00 3.18
219 220 4.930963 ACATTTTTCGAATGCTGTCAACA 58.069 34.783 0.00 0.00 0.00 3.33
220 221 5.531634 ACATTTTTCGAATGCTGTCAACAT 58.468 33.333 0.00 0.00 0.00 2.71
221 222 5.630680 ACATTTTTCGAATGCTGTCAACATC 59.369 36.000 0.00 0.00 0.00 3.06
222 223 5.437289 TTTTTCGAATGCTGTCAACATCT 57.563 34.783 0.00 0.00 0.00 2.90
223 224 5.437289 TTTTCGAATGCTGTCAACATCTT 57.563 34.783 0.00 0.00 0.00 2.40
224 225 5.437289 TTTCGAATGCTGTCAACATCTTT 57.563 34.783 0.00 0.00 0.00 2.52
225 226 5.437289 TTCGAATGCTGTCAACATCTTTT 57.563 34.783 0.00 0.00 0.00 2.27
226 227 5.437289 TCGAATGCTGTCAACATCTTTTT 57.563 34.783 0.00 0.00 0.00 1.94
227 228 6.552859 TCGAATGCTGTCAACATCTTTTTA 57.447 33.333 0.00 0.00 0.00 1.52
228 229 6.964908 TCGAATGCTGTCAACATCTTTTTAA 58.035 32.000 0.00 0.00 0.00 1.52
229 230 7.421599 TCGAATGCTGTCAACATCTTTTTAAA 58.578 30.769 0.00 0.00 0.00 1.52
230 231 7.591057 TCGAATGCTGTCAACATCTTTTTAAAG 59.409 33.333 0.00 0.00 37.36 1.85
231 232 7.379529 CGAATGCTGTCAACATCTTTTTAAAGT 59.620 33.333 2.44 0.00 37.31 2.66
232 233 8.947055 AATGCTGTCAACATCTTTTTAAAGTT 57.053 26.923 2.44 0.00 37.31 2.66
233 234 7.754069 TGCTGTCAACATCTTTTTAAAGTTG 57.246 32.000 9.75 9.75 40.08 3.16
234 235 7.319646 TGCTGTCAACATCTTTTTAAAGTTGT 58.680 30.769 13.71 11.32 45.76 3.32
235 236 7.487829 TGCTGTCAACATCTTTTTAAAGTTGTC 59.512 33.333 15.50 10.40 44.08 3.18
236 237 7.305418 GCTGTCAACATCTTTTTAAAGTTGTCG 60.305 37.037 15.50 8.13 44.08 4.35
237 238 7.753659 TGTCAACATCTTTTTAAAGTTGTCGA 58.246 30.769 15.50 9.86 44.08 4.20
238 239 8.237949 TGTCAACATCTTTTTAAAGTTGTCGAA 58.762 29.630 15.50 5.77 44.08 3.71
239 240 8.521059 GTCAACATCTTTTTAAAGTTGTCGAAC 58.479 33.333 15.50 11.50 44.08 3.95
240 241 8.237949 TCAACATCTTTTTAAAGTTGTCGAACA 58.762 29.630 15.50 0.00 44.08 3.18
241 242 7.964545 ACATCTTTTTAAAGTTGTCGAACAC 57.035 32.000 11.32 0.00 42.29 3.32
242 243 7.758495 ACATCTTTTTAAAGTTGTCGAACACT 58.242 30.769 11.32 0.00 42.29 3.55
243 244 7.908601 ACATCTTTTTAAAGTTGTCGAACACTC 59.091 33.333 11.32 0.00 42.29 3.51
244 245 7.605410 TCTTTTTAAAGTTGTCGAACACTCT 57.395 32.000 2.44 0.00 37.31 3.24
245 246 8.036273 TCTTTTTAAAGTTGTCGAACACTCTT 57.964 30.769 2.44 0.00 37.31 2.85
246 247 8.508875 TCTTTTTAAAGTTGTCGAACACTCTTT 58.491 29.630 14.73 14.73 36.85 2.52
247 248 9.124807 CTTTTTAAAGTTGTCGAACACTCTTTT 57.875 29.630 15.15 5.15 35.60 2.27
248 249 9.465985 TTTTTAAAGTTGTCGAACACTCTTTTT 57.534 25.926 15.15 4.91 35.60 1.94
250 251 9.545611 TTTAAAGTTGTCGAACACTCTTTTTAC 57.454 29.630 15.15 0.00 35.60 2.01
251 252 6.730960 AAGTTGTCGAACACTCTTTTTACA 57.269 33.333 0.00 0.00 34.17 2.41
252 253 6.920569 AGTTGTCGAACACTCTTTTTACAT 57.079 33.333 0.00 0.00 34.17 2.29
253 254 7.316544 AGTTGTCGAACACTCTTTTTACATT 57.683 32.000 0.00 0.00 34.17 2.71
254 255 7.186804 AGTTGTCGAACACTCTTTTTACATTG 58.813 34.615 0.00 0.00 34.17 2.82
255 256 6.055231 TGTCGAACACTCTTTTTACATTGG 57.945 37.500 0.00 0.00 0.00 3.16
256 257 5.818336 TGTCGAACACTCTTTTTACATTGGA 59.182 36.000 0.00 0.00 0.00 3.53
257 258 6.485313 TGTCGAACACTCTTTTTACATTGGAT 59.515 34.615 0.00 0.00 0.00 3.41
258 259 6.797033 GTCGAACACTCTTTTTACATTGGATG 59.203 38.462 0.00 0.00 0.00 3.51
259 260 6.708502 TCGAACACTCTTTTTACATTGGATGA 59.291 34.615 0.00 0.00 0.00 2.92
260 261 7.227711 TCGAACACTCTTTTTACATTGGATGAA 59.772 33.333 0.00 0.00 0.00 2.57
261 262 7.323656 CGAACACTCTTTTTACATTGGATGAAC 59.676 37.037 0.00 0.00 0.00 3.18
262 263 7.581213 ACACTCTTTTTACATTGGATGAACA 57.419 32.000 0.00 0.00 0.00 3.18
263 264 8.181904 ACACTCTTTTTACATTGGATGAACAT 57.818 30.769 0.00 0.00 0.00 2.71
264 265 8.641541 ACACTCTTTTTACATTGGATGAACATT 58.358 29.630 0.00 0.00 0.00 2.71
265 266 9.480053 CACTCTTTTTACATTGGATGAACATTT 57.520 29.630 0.00 0.00 0.00 2.32
266 267 9.696917 ACTCTTTTTACATTGGATGAACATTTC 57.303 29.630 0.00 0.00 0.00 2.17
267 268 9.143631 CTCTTTTTACATTGGATGAACATTTCC 57.856 33.333 0.00 0.00 0.00 3.13
268 269 8.646004 TCTTTTTACATTGGATGAACATTTCCA 58.354 29.630 0.00 0.00 40.24 3.53
269 270 9.439500 CTTTTTACATTGGATGAACATTTCCAT 57.561 29.630 0.00 0.00 41.52 3.41
353 354 8.894768 ATAAAAATGAAAAATGTTCCCAACGA 57.105 26.923 0.00 0.00 0.00 3.85
354 355 7.617041 AAAAATGAAAAATGTTCCCAACGAA 57.383 28.000 0.00 0.00 0.00 3.85
355 356 6.843069 AAATGAAAAATGTTCCCAACGAAG 57.157 33.333 0.00 0.00 0.00 3.79
356 357 4.314740 TGAAAAATGTTCCCAACGAAGG 57.685 40.909 0.00 0.00 0.00 3.46
357 358 2.812358 AAAATGTTCCCAACGAAGGC 57.188 45.000 0.00 0.00 0.00 4.35
358 359 0.596082 AAATGTTCCCAACGAAGGCG 59.404 50.000 0.00 0.00 44.79 5.52
359 360 0.250553 AATGTTCCCAACGAAGGCGA 60.251 50.000 0.00 0.00 41.64 5.54
360 361 0.035439 ATGTTCCCAACGAAGGCGAT 60.035 50.000 0.00 0.00 41.64 4.58
361 362 0.672401 TGTTCCCAACGAAGGCGATC 60.672 55.000 0.00 0.00 41.64 3.69
362 363 1.078708 TTCCCAACGAAGGCGATCC 60.079 57.895 0.00 0.00 41.64 3.36
364 365 1.521681 CCCAACGAAGGCGATCCTC 60.522 63.158 0.00 0.00 43.40 3.71
365 366 1.521681 CCAACGAAGGCGATCCTCC 60.522 63.158 0.00 0.00 43.40 4.30
366 367 1.521681 CAACGAAGGCGATCCTCCC 60.522 63.158 0.00 0.00 43.40 4.30
367 368 1.987855 AACGAAGGCGATCCTCCCA 60.988 57.895 0.00 0.00 43.40 4.37
368 369 2.107141 CGAAGGCGATCCTCCCAC 59.893 66.667 0.00 0.00 43.40 4.61
369 370 2.107141 GAAGGCGATCCTCCCACG 59.893 66.667 0.00 0.00 43.40 4.94
370 371 2.683933 AAGGCGATCCTCCCACGT 60.684 61.111 0.00 0.00 43.40 4.49
371 372 2.240162 GAAGGCGATCCTCCCACGTT 62.240 60.000 0.00 0.00 43.40 3.99
372 373 2.511600 GGCGATCCTCCCACGTTG 60.512 66.667 0.00 0.00 0.00 4.10
373 374 2.577059 GCGATCCTCCCACGTTGA 59.423 61.111 0.00 0.00 0.00 3.18
374 375 1.519455 GCGATCCTCCCACGTTGAG 60.519 63.158 5.11 5.11 0.00 3.02
375 376 1.519455 CGATCCTCCCACGTTGAGC 60.519 63.158 6.37 0.00 0.00 4.26
376 377 1.153349 GATCCTCCCACGTTGAGCC 60.153 63.158 6.37 0.00 0.00 4.70
377 378 2.907897 GATCCTCCCACGTTGAGCCG 62.908 65.000 6.37 0.00 0.00 5.52
378 379 3.691342 CCTCCCACGTTGAGCCGA 61.691 66.667 6.37 0.00 0.00 5.54
379 380 2.432628 CTCCCACGTTGAGCCGAC 60.433 66.667 0.00 0.00 0.00 4.79
380 381 2.915659 TCCCACGTTGAGCCGACT 60.916 61.111 0.00 0.00 0.00 4.18
381 382 2.030562 CCCACGTTGAGCCGACTT 59.969 61.111 0.00 0.00 0.00 3.01
382 383 1.180456 TCCCACGTTGAGCCGACTTA 61.180 55.000 0.00 0.00 0.00 2.24
383 384 0.108329 CCCACGTTGAGCCGACTTAT 60.108 55.000 0.00 0.00 0.00 1.73
384 385 1.674817 CCCACGTTGAGCCGACTTATT 60.675 52.381 0.00 0.00 0.00 1.40
385 386 2.073816 CCACGTTGAGCCGACTTATTT 58.926 47.619 0.00 0.00 0.00 1.40
386 387 3.255725 CCACGTTGAGCCGACTTATTTA 58.744 45.455 0.00 0.00 0.00 1.40
387 388 3.306166 CCACGTTGAGCCGACTTATTTAG 59.694 47.826 0.00 0.00 0.00 1.85
388 389 3.306166 CACGTTGAGCCGACTTATTTAGG 59.694 47.826 0.00 0.00 0.00 2.69
389 390 2.864343 CGTTGAGCCGACTTATTTAGGG 59.136 50.000 0.00 0.00 0.00 3.53
390 391 2.612672 GTTGAGCCGACTTATTTAGGGC 59.387 50.000 0.00 0.00 44.07 5.19
392 393 3.673173 GCCGACTTATTTAGGGCGA 57.327 52.632 0.00 0.00 33.58 5.54
393 394 1.215244 GCCGACTTATTTAGGGCGAC 58.785 55.000 0.00 0.00 33.58 5.19
405 406 4.070552 GGCGACCTTGAGGCGAGT 62.071 66.667 14.90 0.00 39.32 4.18
406 407 2.811317 GCGACCTTGAGGCGAGTG 60.811 66.667 14.90 0.00 39.32 3.51
407 408 2.962569 CGACCTTGAGGCGAGTGA 59.037 61.111 7.73 0.00 39.32 3.41
408 409 1.289066 CGACCTTGAGGCGAGTGAA 59.711 57.895 7.73 0.00 39.32 3.18
409 410 1.009389 CGACCTTGAGGCGAGTGAAC 61.009 60.000 7.73 0.00 39.32 3.18
410 411 0.670854 GACCTTGAGGCGAGTGAACC 60.671 60.000 0.00 0.00 39.32 3.62
411 412 1.371183 CCTTGAGGCGAGTGAACCA 59.629 57.895 0.00 0.00 0.00 3.67
412 413 0.036010 CCTTGAGGCGAGTGAACCAT 60.036 55.000 0.00 0.00 0.00 3.55
413 414 1.611673 CCTTGAGGCGAGTGAACCATT 60.612 52.381 0.00 0.00 0.00 3.16
414 415 1.734465 CTTGAGGCGAGTGAACCATTC 59.266 52.381 0.00 0.00 0.00 2.67
415 416 0.684535 TGAGGCGAGTGAACCATTCA 59.315 50.000 0.00 0.00 37.33 2.57
416 417 1.278985 TGAGGCGAGTGAACCATTCAT 59.721 47.619 0.00 0.00 42.47 2.57
417 418 1.936547 GAGGCGAGTGAACCATTCATC 59.063 52.381 0.00 0.00 42.47 2.92
418 419 1.278985 AGGCGAGTGAACCATTCATCA 59.721 47.619 0.00 0.00 42.47 3.07
419 420 1.398390 GGCGAGTGAACCATTCATCAC 59.602 52.381 0.00 0.00 44.92 3.06
426 427 5.597813 GTGAACCATTCATCACGGATATC 57.402 43.478 0.00 0.00 42.47 1.63
427 428 5.300752 GTGAACCATTCATCACGGATATCT 58.699 41.667 2.05 0.00 42.47 1.98
428 429 5.406780 GTGAACCATTCATCACGGATATCTC 59.593 44.000 2.05 0.00 42.47 2.75
429 430 4.543590 ACCATTCATCACGGATATCTCC 57.456 45.455 2.05 0.00 38.29 3.71
430 431 4.163427 ACCATTCATCACGGATATCTCCT 58.837 43.478 2.05 0.00 39.65 3.69
431 432 4.221703 ACCATTCATCACGGATATCTCCTC 59.778 45.833 2.05 0.00 39.65 3.71
432 433 4.221482 CCATTCATCACGGATATCTCCTCA 59.779 45.833 2.05 0.00 39.65 3.86
433 434 5.279657 CCATTCATCACGGATATCTCCTCAA 60.280 44.000 2.05 0.00 39.65 3.02
434 435 5.459536 TTCATCACGGATATCTCCTCAAG 57.540 43.478 2.05 0.00 39.65 3.02
435 436 3.256879 TCATCACGGATATCTCCTCAAGC 59.743 47.826 2.05 0.00 39.65 4.01
436 437 1.964223 TCACGGATATCTCCTCAAGCC 59.036 52.381 2.05 0.00 39.65 4.35
437 438 1.001406 CACGGATATCTCCTCAAGCCC 59.999 57.143 2.05 0.00 39.65 5.19
438 439 0.610687 CGGATATCTCCTCAAGCCCC 59.389 60.000 2.05 0.00 39.65 5.80
439 440 1.734655 GGATATCTCCTCAAGCCCCA 58.265 55.000 2.05 0.00 38.65 4.96
440 441 2.273619 GGATATCTCCTCAAGCCCCAT 58.726 52.381 2.05 0.00 38.65 4.00
441 442 3.454858 GGATATCTCCTCAAGCCCCATA 58.545 50.000 2.05 0.00 38.65 2.74
442 443 4.043596 GGATATCTCCTCAAGCCCCATAT 58.956 47.826 2.05 0.00 38.65 1.78
443 444 4.141528 GGATATCTCCTCAAGCCCCATATG 60.142 50.000 2.05 0.00 38.65 1.78
444 445 0.767375 TCTCCTCAAGCCCCATATGC 59.233 55.000 0.00 0.00 0.00 3.14
445 446 0.251077 CTCCTCAAGCCCCATATGCC 60.251 60.000 0.00 0.00 0.00 4.40
446 447 0.992970 TCCTCAAGCCCCATATGCCA 60.993 55.000 0.00 0.00 0.00 4.92
447 448 0.113776 CCTCAAGCCCCATATGCCAT 59.886 55.000 0.00 0.00 0.00 4.40
448 449 1.542492 CTCAAGCCCCATATGCCATC 58.458 55.000 0.00 0.00 0.00 3.51
449 450 0.250858 TCAAGCCCCATATGCCATCG 60.251 55.000 0.00 0.00 0.00 3.84
450 451 0.250858 CAAGCCCCATATGCCATCGA 60.251 55.000 0.00 0.00 0.00 3.59
451 452 0.037303 AAGCCCCATATGCCATCGAG 59.963 55.000 0.00 0.00 0.00 4.04
452 453 0.837691 AGCCCCATATGCCATCGAGA 60.838 55.000 0.00 0.00 0.00 4.04
453 454 0.392193 GCCCCATATGCCATCGAGAG 60.392 60.000 0.00 0.00 0.00 3.20
454 455 0.979665 CCCCATATGCCATCGAGAGT 59.020 55.000 0.00 0.00 0.00 3.24
455 456 1.349026 CCCCATATGCCATCGAGAGTT 59.651 52.381 0.00 0.00 0.00 3.01
456 457 2.224621 CCCCATATGCCATCGAGAGTTT 60.225 50.000 0.00 0.00 0.00 2.66
457 458 3.070018 CCCATATGCCATCGAGAGTTTC 58.930 50.000 0.00 0.00 0.00 2.78
458 459 3.070018 CCATATGCCATCGAGAGTTTCC 58.930 50.000 0.00 0.00 0.00 3.13
459 460 3.494924 CCATATGCCATCGAGAGTTTCCA 60.495 47.826 0.00 0.00 0.00 3.53
460 461 4.321718 CATATGCCATCGAGAGTTTCCAT 58.678 43.478 0.00 0.00 0.00 3.41
461 462 2.028420 TGCCATCGAGAGTTTCCATG 57.972 50.000 0.00 0.00 0.00 3.66
462 463 1.303309 GCCATCGAGAGTTTCCATGG 58.697 55.000 4.97 4.97 37.63 3.66
463 464 1.959042 CCATCGAGAGTTTCCATGGG 58.041 55.000 13.02 0.00 31.85 4.00
464 465 1.475751 CCATCGAGAGTTTCCATGGGG 60.476 57.143 13.02 0.00 31.85 4.96
465 466 0.181350 ATCGAGAGTTTCCATGGGGC 59.819 55.000 13.02 2.34 0.00 5.80
476 477 1.593265 CATGGGGCTGCTCAAAACC 59.407 57.895 0.21 0.00 0.00 3.27
478 479 3.373565 GGGGCTGCTCAAAACCGG 61.374 66.667 0.00 0.00 0.00 5.28
489 490 2.197605 AAAACCGGAGCCGTTTGGG 61.198 57.895 9.46 0.00 37.81 4.12
511 512 1.412710 TCAGCCCATATTCGTGTCCTC 59.587 52.381 0.00 0.00 0.00 3.71
515 516 2.028930 GCCCATATTCGTGTCCTCCTAG 60.029 54.545 0.00 0.00 0.00 3.02
521 522 3.851128 GTGTCCTCCTAGCCCGCC 61.851 72.222 0.00 0.00 0.00 6.13
535 536 1.951130 CCGCCCATCAACGAGATCG 60.951 63.158 0.00 0.00 46.33 3.69
538 539 0.103208 GCCCATCAACGAGATCGAGT 59.897 55.000 9.58 0.00 43.02 4.18
546 547 2.333688 ACGAGATCGAGTCCATCTCA 57.666 50.000 22.61 0.00 44.61 3.27
547 548 2.217750 ACGAGATCGAGTCCATCTCAG 58.782 52.381 22.61 17.76 44.61 3.35
551 552 4.133820 GAGATCGAGTCCATCTCAGAGAA 58.866 47.826 19.40 0.00 44.04 2.87
599 619 1.157870 CCAAACAGGTCGTGCTTCGT 61.158 55.000 0.00 0.00 40.80 3.85
600 620 0.042188 CAAACAGGTCGTGCTTCGTG 60.042 55.000 0.00 0.00 40.80 4.35
612 632 3.551496 CTTCGTGGGCCAGCCAAGA 62.551 63.158 6.40 0.00 37.98 3.02
613 633 3.126703 TTCGTGGGCCAGCCAAGAA 62.127 57.895 6.40 4.83 37.98 2.52
614 634 3.058160 CGTGGGCCAGCCAAGAAG 61.058 66.667 6.40 0.00 37.98 2.85
615 635 3.376918 GTGGGCCAGCCAAGAAGC 61.377 66.667 6.40 0.00 37.98 3.86
618 638 3.066814 GGCCAGCCAAGAAGCCAG 61.067 66.667 3.12 0.00 45.07 4.85
619 639 3.756727 GCCAGCCAAGAAGCCAGC 61.757 66.667 0.00 0.00 0.00 4.85
620 640 2.282674 CCAGCCAAGAAGCCAGCA 60.283 61.111 0.00 0.00 0.00 4.41
621 641 1.681327 CCAGCCAAGAAGCCAGCAT 60.681 57.895 0.00 0.00 0.00 3.79
622 642 1.511305 CAGCCAAGAAGCCAGCATG 59.489 57.895 0.00 0.00 0.00 4.06
623 643 2.183555 GCCAAGAAGCCAGCATGC 59.816 61.111 10.51 10.51 31.97 4.06
624 644 2.890371 CCAAGAAGCCAGCATGCC 59.110 61.111 15.66 0.00 31.97 4.40
625 645 2.718073 CCAAGAAGCCAGCATGCCC 61.718 63.158 15.66 3.01 31.97 5.36
626 646 2.753043 AAGAAGCCAGCATGCCCG 60.753 61.111 15.66 5.83 31.97 6.13
658 678 0.035439 ACTAAATGGGTCGTGCCAGG 60.035 55.000 0.00 0.00 39.65 4.45
678 698 3.850098 CTTGCACGACCCCAGGCTT 62.850 63.158 0.00 0.00 0.00 4.35
679 699 4.641645 TGCACGACCCCAGGCTTG 62.642 66.667 0.00 0.00 0.00 4.01
680 700 4.643387 GCACGACCCCAGGCTTGT 62.643 66.667 0.00 0.00 0.00 3.16
681 701 2.113139 CACGACCCCAGGCTTGTT 59.887 61.111 0.00 0.00 0.00 2.83
682 702 2.113139 ACGACCCCAGGCTTGTTG 59.887 61.111 0.00 0.00 0.00 3.33
683 703 3.365265 CGACCCCAGGCTTGTTGC 61.365 66.667 0.00 0.00 41.94 4.17
711 748 3.134127 GCCGGCATGGTCCTGTTC 61.134 66.667 24.80 0.00 41.21 3.18
723 760 7.099120 GCATGGTCCTGTTCATTTCTTTATTT 58.901 34.615 0.00 0.00 0.00 1.40
725 762 9.492973 CATGGTCCTGTTCATTTCTTTATTTTT 57.507 29.630 0.00 0.00 0.00 1.94
726 763 9.710900 ATGGTCCTGTTCATTTCTTTATTTTTC 57.289 29.630 0.00 0.00 0.00 2.29
727 764 8.147704 TGGTCCTGTTCATTTCTTTATTTTTCC 58.852 33.333 0.00 0.00 0.00 3.13
729 766 9.196552 GTCCTGTTCATTTCTTTATTTTTCCTG 57.803 33.333 0.00 0.00 0.00 3.86
730 767 9.142014 TCCTGTTCATTTCTTTATTTTTCCTGA 57.858 29.630 0.00 0.00 0.00 3.86
731 768 9.762933 CCTGTTCATTTCTTTATTTTTCCTGAA 57.237 29.630 0.00 0.00 0.00 3.02
772 841 0.034337 AAAAGGCCGAAGAGCACGTA 59.966 50.000 0.00 0.00 0.00 3.57
778 847 1.517257 CGAAGAGCACGTAGGCAGG 60.517 63.158 0.36 0.00 35.83 4.85
779 848 1.811679 GAAGAGCACGTAGGCAGGC 60.812 63.158 0.36 0.00 35.83 4.85
780 849 3.316573 AAGAGCACGTAGGCAGGCC 62.317 63.158 0.97 0.97 35.83 5.19
819 888 0.034896 CCCACATGTATACGGGCCTC 59.965 60.000 0.84 0.00 0.00 4.70
826 895 2.837883 TATACGGGCCTCGACGTGC 61.838 63.158 18.74 0.00 43.93 5.34
1058 1129 3.374402 CCACTCCAGTCGCCGAGT 61.374 66.667 0.00 0.00 39.96 4.18
1091 1162 0.386985 GGAAGTGTGAGTCGTCGGAC 60.387 60.000 0.00 0.00 43.76 4.79
1370 1441 4.154347 GGGTGAGGCCGAGCTCTG 62.154 72.222 12.85 6.45 38.44 3.35
1402 1473 1.276989 GGTTTCCGTACCACCAGATCA 59.723 52.381 0.00 0.00 38.12 2.92
1553 1624 1.590238 CGAGTTGTGGATCATTCGCTC 59.410 52.381 0.00 0.00 30.95 5.03
1563 1634 1.019278 TCATTCGCTCGGACCAAAGC 61.019 55.000 5.89 5.89 35.13 3.51
1564 1635 1.745489 ATTCGCTCGGACCAAAGCC 60.745 57.895 9.65 0.00 35.00 4.35
1569 1643 3.551496 CTCGGACCAAAGCCCTGCA 62.551 63.158 0.00 0.00 0.00 4.41
1588 1662 4.325972 TGCATAGCACTCTTGATTTGTCA 58.674 39.130 0.00 0.00 31.71 3.58
1610 1684 5.527214 TCATAGTGTTGTTGGAGTTCAGTTG 59.473 40.000 0.00 0.00 0.00 3.16
1613 1687 4.522789 AGTGTTGTTGGAGTTCAGTTGTTT 59.477 37.500 0.00 0.00 0.00 2.83
1624 1698 1.132834 TCAGTTGTTTGCAGCAGTGTG 59.867 47.619 0.00 0.00 0.00 3.82
1643 1717 5.473162 AGTGTGCTGTTATTGATTTGTGCTA 59.527 36.000 0.00 0.00 0.00 3.49
1689 1763 0.108186 TTGTGGAGCAGGCGATACAG 60.108 55.000 0.00 0.00 0.00 2.74
1696 1770 0.872021 GCAGGCGATACAGTTCTCCG 60.872 60.000 0.00 0.00 0.00 4.63
1725 1799 4.093556 GCTGCCAAAGTGTCTATTACTGAC 59.906 45.833 0.00 0.00 35.21 3.51
2055 2130 7.600375 TCCTAATCTTATCTTGAACATCGCATC 59.400 37.037 0.00 0.00 0.00 3.91
2091 2166 2.781595 AAAGTAGCGCGGTGTCAGGG 62.782 60.000 23.02 0.00 0.00 4.45
2121 2201 9.757227 AATCTAAGATCTCTAAACGGATTTGAG 57.243 33.333 0.00 3.70 0.00 3.02
2135 2215 8.561738 AACGGATTTGAGTAAATTGAGTATGT 57.438 30.769 0.00 0.00 36.66 2.29
2200 2280 7.424803 TGACCAAATTATTGTTTCAGTCACAG 58.575 34.615 0.00 0.00 34.60 3.66
2420 2503 9.158233 CCCTTTCTAGATGTCGTGTTTTTATTA 57.842 33.333 0.00 0.00 0.00 0.98
2434 2517 8.417176 CGTGTTTTTATTATTCACTTCAACAGC 58.583 33.333 0.00 0.00 0.00 4.40
2444 2527 2.096565 CACTTCAACAGCTCGTGATGTG 60.097 50.000 19.56 19.56 42.52 3.21
2545 2628 0.681175 GGAACCCACTGCAAAGCATT 59.319 50.000 0.00 0.00 38.13 3.56
2705 2788 6.931281 GCATTCTCACTGGTAGATAATTAGCA 59.069 38.462 3.17 0.00 0.00 3.49
2754 2837 0.732880 CACGTGGTCTGCCTCTAACG 60.733 60.000 7.95 0.00 37.09 3.18
2942 3025 3.558418 GCTGTTAACCTTTCGTGTTCAGA 59.442 43.478 2.48 0.00 0.00 3.27
3096 3179 1.546476 CGCTACACAAGGTTCTCTCCT 59.454 52.381 0.00 0.00 39.84 3.69
3162 3245 1.909781 CCCAGCAAGTGCCCAACAT 60.910 57.895 0.00 0.00 43.38 2.71
3185 3268 1.134560 GTCTATCCCAGCGACTTCGTT 59.865 52.381 0.00 0.00 42.22 3.85
3472 3557 5.163764 CGCTATGATGCTTGTTAACCTTTGA 60.164 40.000 2.48 0.00 0.00 2.69
3602 3708 9.971922 GCACCTTGCAGATATAAAATATTCTTT 57.028 29.630 0.00 0.00 44.26 2.52
3699 3870 8.794335 AAGTTATTCTTAAGTCTGGGAATGTC 57.206 34.615 1.63 0.00 34.23 3.06
3812 3985 4.463050 TGGGGATTTGTTTCAGTAAGGT 57.537 40.909 0.00 0.00 0.00 3.50
4089 4262 5.244402 TCTCACATTCACGAAGGTAACCTTA 59.756 40.000 0.00 0.00 44.82 2.69
4189 4362 8.996271 TGCTACAGAATAAGCAAAGATCATATG 58.004 33.333 0.00 0.00 45.36 1.78
4231 4404 9.075519 TGTCAATCGAGAAAATGCATTTATTTC 57.924 29.630 24.35 17.76 34.14 2.17
4287 4461 1.308047 TTGGCATACATGATGACCGC 58.692 50.000 0.00 0.00 43.89 5.68
4548 4724 2.271800 GTGTTCCAGTAAGGCTCGATG 58.728 52.381 0.00 0.00 37.29 3.84
4631 4807 4.823989 GTCTTGATGCCATAGTTATGCCTT 59.176 41.667 0.00 0.00 32.40 4.35
4691 4868 8.928270 ATAGTAGTCACAGTTTATTGTACAGC 57.072 34.615 0.00 0.00 0.00 4.40
4836 5013 3.181469 ACGCAGTTTTCTCACTGACCTTA 60.181 43.478 5.01 0.00 46.29 2.69
4875 5052 4.779819 GCAAATGCTTGGAGCTCG 57.220 55.556 7.83 0.00 42.97 5.03
4984 5161 2.604914 GCTGTGTCGTCCATACAGATTG 59.395 50.000 7.71 0.00 45.02 2.67
5073 5251 3.073062 AGGAGTAGCACAACCAGACAAAT 59.927 43.478 0.00 0.00 0.00 2.32
5080 5258 4.869861 AGCACAACCAGACAAATTTTGAAC 59.130 37.500 15.81 9.01 0.00 3.18
5215 5396 3.446507 GCCTGTGGCCATGAAAATG 57.553 52.632 9.72 0.00 44.06 2.32
5216 5397 0.108041 GCCTGTGGCCATGAAAATGG 60.108 55.000 9.72 4.99 44.06 3.16
5256 5437 4.217767 AGCTTTTTCAATAAACTCGGGACC 59.782 41.667 0.00 0.00 0.00 4.46
5266 5447 2.200373 ACTCGGGACCTGAATTTTGG 57.800 50.000 4.14 0.00 0.00 3.28
5267 5448 1.423921 ACTCGGGACCTGAATTTTGGT 59.576 47.619 4.14 3.39 39.60 3.67
5310 5491 2.083774 AGTTCGCCATGGTATGTGTTG 58.916 47.619 14.67 0.00 0.00 3.33
5425 5606 7.630082 TGGAGTATCTAATAAAGTTGGCTTGT 58.370 34.615 0.00 0.00 32.58 3.16
5511 5692 4.578516 TCACCGGCCAATTTGTTCATATAG 59.421 41.667 0.00 0.00 0.00 1.31
5563 5745 3.776969 AGTGGCATCAAGGATCAAGACTA 59.223 43.478 0.00 0.00 0.00 2.59
5658 5858 7.821846 GTCACTCTCTTTGAAACTATTCAGGAT 59.178 37.037 0.00 0.00 45.82 3.24
5681 5881 3.381590 GGGAAAATATCAGGTGCTTCCAC 59.618 47.826 0.00 0.00 41.32 4.02
5682 5882 3.065371 GGAAAATATCAGGTGCTTCCACG 59.935 47.826 0.00 0.00 43.00 4.94
5689 5889 3.443045 GTGCTTCCACGCCCCATG 61.443 66.667 0.00 0.00 31.34 3.66
5709 5909 1.841556 TCCCTTGACACGGGAGCTT 60.842 57.895 15.61 0.00 45.67 3.74
5714 5914 0.181587 TTGACACGGGAGCTTTTGGA 59.818 50.000 0.00 0.00 0.00 3.53
5723 5923 2.159382 GGAGCTTTTGGAATCCAACGA 58.841 47.619 15.24 5.68 43.82 3.85
5760 5960 5.525199 TGCGTAAAATTGAGAAAACCCTTC 58.475 37.500 0.00 0.00 0.00 3.46
5780 5980 3.585862 TCGAAGAGGTCTGAAATTTCGG 58.414 45.455 19.25 19.25 38.26 4.30
5785 5990 3.264450 AGAGGTCTGAAATTTCGGTCCAT 59.736 43.478 31.78 22.15 42.07 3.41
5789 5994 3.312697 GTCTGAAATTTCGGTCCATAGGC 59.687 47.826 23.19 7.46 35.11 3.93
5791 5996 3.278574 TGAAATTTCGGTCCATAGGCTG 58.721 45.455 13.34 0.00 0.00 4.85
5795 6000 2.279517 CGGTCCATAGGCTGCGAC 60.280 66.667 0.00 0.00 0.00 5.19
5817 6022 4.840911 CGCTCATCGTTCAATTCATGATT 58.159 39.130 0.00 0.00 38.03 2.57
5819 6024 5.277202 CGCTCATCGTTCAATTCATGATTCT 60.277 40.000 0.00 0.00 38.03 2.40
5829 6034 2.620251 TCATGATTCTAACGGCCCAG 57.380 50.000 0.00 0.00 0.00 4.45
5832 6037 0.830648 TGATTCTAACGGCCCAGGAG 59.169 55.000 0.00 0.00 0.00 3.69
5842 6048 3.043419 CCCAGGAGCTCCGTATCG 58.957 66.667 26.95 13.64 42.08 2.92
5859 6065 3.064324 GTGGGTGCATGGGAGTGC 61.064 66.667 0.00 0.00 45.25 4.40
5908 6114 9.692325 AAACAAGGAAATTCTATGAATCTAGCT 57.308 29.630 0.00 0.00 0.00 3.32
5909 6115 8.674263 ACAAGGAAATTCTATGAATCTAGCTG 57.326 34.615 0.00 0.00 0.00 4.24
5910 6116 8.489489 ACAAGGAAATTCTATGAATCTAGCTGA 58.511 33.333 0.00 0.00 0.00 4.26
5911 6117 9.334947 CAAGGAAATTCTATGAATCTAGCTGAA 57.665 33.333 0.00 0.00 0.00 3.02
5912 6118 9.911788 AAGGAAATTCTATGAATCTAGCTGAAA 57.088 29.630 0.00 0.00 0.00 2.69
5913 6119 9.558396 AGGAAATTCTATGAATCTAGCTGAAAG 57.442 33.333 0.00 0.00 0.00 2.62
5914 6120 9.553064 GGAAATTCTATGAATCTAGCTGAAAGA 57.447 33.333 0.00 0.00 34.07 2.52
5931 6137 0.178958 AGAAGTGGTCACGGTCTCCT 60.179 55.000 5.07 0.00 36.20 3.69
5933 6139 1.891150 GAAGTGGTCACGGTCTCCTTA 59.109 52.381 0.00 0.00 36.20 2.69
5968 6175 1.316706 GCACTCTCGTCCTGTAGGCT 61.317 60.000 0.00 0.00 34.44 4.58
5976 6183 0.035458 GTCCTGTAGGCTGCAACACT 59.965 55.000 6.76 0.00 34.44 3.55
5986 6193 1.225855 CTGCAACACTTTGTAGCCGA 58.774 50.000 0.00 0.00 38.43 5.54
5987 6194 1.601903 CTGCAACACTTTGTAGCCGAA 59.398 47.619 0.00 0.00 38.43 4.30
5988 6195 1.601903 TGCAACACTTTGTAGCCGAAG 59.398 47.619 0.00 0.00 37.97 3.79
5989 6196 1.663161 GCAACACTTTGTAGCCGAAGC 60.663 52.381 0.00 0.00 35.75 3.86
5994 6201 3.243068 ACACTTTGTAGCCGAAGCAAAAG 60.243 43.478 0.00 0.00 43.56 2.27
6015 6222 5.416271 AGGGAGTAATTTCTGCTAACGAA 57.584 39.130 3.73 0.00 0.00 3.85
6030 6237 4.681942 GCTAACGAACGATCATGAGCTTAT 59.318 41.667 9.64 0.00 0.00 1.73
6032 6239 4.307443 ACGAACGATCATGAGCTTATCA 57.693 40.909 9.64 0.00 43.70 2.15
6047 6254 4.951715 AGCTTATCATGCTCCAAATGAACA 59.048 37.500 0.00 0.00 37.58 3.18
6052 6259 2.818130 TGCTCCAAATGAACAAAGCC 57.182 45.000 0.00 0.00 0.00 4.35
6057 6264 4.119136 CTCCAAATGAACAAAGCCGTTTT 58.881 39.130 0.00 0.00 0.00 2.43
6059 6266 4.568760 TCCAAATGAACAAAGCCGTTTTTC 59.431 37.500 0.00 0.00 0.00 2.29
6066 6276 0.317854 AAAGCCGTTTTTCTGCTCGC 60.318 50.000 0.00 0.00 35.64 5.03
6093 6303 5.986936 GCTTACCAATCTTAATAAGCCGAC 58.013 41.667 5.34 0.00 42.35 4.79
6112 6322 3.566322 CGACCAACTTGTTAATCCACCAA 59.434 43.478 0.00 0.00 0.00 3.67
6113 6323 4.555906 CGACCAACTTGTTAATCCACCAAC 60.556 45.833 0.00 0.00 0.00 3.77
6119 6329 6.976934 ACTTGTTAATCCACCAACATTTCT 57.023 33.333 0.00 0.00 34.78 2.52
6124 6334 6.719370 TGTTAATCCACCAACATTTCTAGCTT 59.281 34.615 0.00 0.00 29.93 3.74
6139 6349 2.862223 GCTTCCGCTCCGCTCCTAT 61.862 63.158 0.00 0.00 0.00 2.57
6140 6350 1.287503 CTTCCGCTCCGCTCCTATC 59.712 63.158 0.00 0.00 0.00 2.08
6141 6351 1.152735 TTCCGCTCCGCTCCTATCT 60.153 57.895 0.00 0.00 0.00 1.98
6142 6352 0.755698 TTCCGCTCCGCTCCTATCTT 60.756 55.000 0.00 0.00 0.00 2.40
6143 6353 0.755698 TCCGCTCCGCTCCTATCTTT 60.756 55.000 0.00 0.00 0.00 2.52
6144 6354 0.105039 CCGCTCCGCTCCTATCTTTT 59.895 55.000 0.00 0.00 0.00 2.27
6145 6355 1.473434 CCGCTCCGCTCCTATCTTTTT 60.473 52.381 0.00 0.00 0.00 1.94
6177 6387 4.043037 CGAATACGCTCCTACCTTTTCT 57.957 45.455 0.00 0.00 0.00 2.52
6178 6388 4.043073 CGAATACGCTCCTACCTTTTCTC 58.957 47.826 0.00 0.00 0.00 2.87
6179 6389 4.202030 CGAATACGCTCCTACCTTTTCTCT 60.202 45.833 0.00 0.00 0.00 3.10
6180 6390 5.008415 CGAATACGCTCCTACCTTTTCTCTA 59.992 44.000 0.00 0.00 0.00 2.43
6181 6391 6.294065 CGAATACGCTCCTACCTTTTCTCTAT 60.294 42.308 0.00 0.00 0.00 1.98
6182 6392 6.980416 ATACGCTCCTACCTTTTCTCTATT 57.020 37.500 0.00 0.00 0.00 1.73
6183 6393 5.678955 ACGCTCCTACCTTTTCTCTATTT 57.321 39.130 0.00 0.00 0.00 1.40
6184 6394 5.662456 ACGCTCCTACCTTTTCTCTATTTC 58.338 41.667 0.00 0.00 0.00 2.17
6185 6395 5.422650 ACGCTCCTACCTTTTCTCTATTTCT 59.577 40.000 0.00 0.00 0.00 2.52
6186 6396 6.606395 ACGCTCCTACCTTTTCTCTATTTCTA 59.394 38.462 0.00 0.00 0.00 2.10
6187 6397 7.142680 CGCTCCTACCTTTTCTCTATTTCTAG 58.857 42.308 0.00 0.00 0.00 2.43
6188 6398 7.201839 CGCTCCTACCTTTTCTCTATTTCTAGT 60.202 40.741 0.00 0.00 0.00 2.57
6189 6399 8.479689 GCTCCTACCTTTTCTCTATTTCTAGTT 58.520 37.037 0.00 0.00 0.00 2.24
6190 6400 9.810545 CTCCTACCTTTTCTCTATTTCTAGTTG 57.189 37.037 0.00 0.00 0.00 3.16
6191 6401 9.543231 TCCTACCTTTTCTCTATTTCTAGTTGA 57.457 33.333 0.00 0.00 0.00 3.18
6192 6402 9.810545 CCTACCTTTTCTCTATTTCTAGTTGAG 57.189 37.037 0.00 0.00 0.00 3.02
6193 6403 9.308318 CTACCTTTTCTCTATTTCTAGTTGAGC 57.692 37.037 0.00 0.00 0.00 4.26
6194 6404 7.680730 ACCTTTTCTCTATTTCTAGTTGAGCA 58.319 34.615 0.00 0.00 0.00 4.26
6195 6405 7.604545 ACCTTTTCTCTATTTCTAGTTGAGCAC 59.395 37.037 0.00 0.00 0.00 4.40
6196 6406 7.604164 CCTTTTCTCTATTTCTAGTTGAGCACA 59.396 37.037 0.00 0.00 0.00 4.57
6197 6407 7.891183 TTTCTCTATTTCTAGTTGAGCACAC 57.109 36.000 0.00 0.00 0.00 3.82
6198 6408 6.842437 TCTCTATTTCTAGTTGAGCACACT 57.158 37.500 0.00 0.00 0.00 3.55
6199 6409 6.857956 TCTCTATTTCTAGTTGAGCACACTC 58.142 40.000 0.00 0.00 43.76 3.51
6212 6422 5.776519 GAGCACACTCATTTCTAGTTGAG 57.223 43.478 14.42 14.42 42.93 3.02
6213 6423 3.999663 AGCACACTCATTTCTAGTTGAGC 59.000 43.478 15.37 6.85 42.51 4.26
6214 6424 3.748048 GCACACTCATTTCTAGTTGAGCA 59.252 43.478 15.37 0.00 42.51 4.26
6215 6425 4.377841 GCACACTCATTTCTAGTTGAGCAC 60.378 45.833 15.37 0.00 42.51 4.40
6216 6426 4.751600 CACACTCATTTCTAGTTGAGCACA 59.248 41.667 15.37 0.00 42.51 4.57
6217 6427 4.752101 ACACTCATTTCTAGTTGAGCACAC 59.248 41.667 15.37 0.00 42.51 3.82
6218 6428 4.993584 CACTCATTTCTAGTTGAGCACACT 59.006 41.667 15.37 0.00 42.51 3.55
6219 6429 5.119898 CACTCATTTCTAGTTGAGCACACTC 59.880 44.000 15.37 0.00 42.51 3.51
6220 6430 5.011533 ACTCATTTCTAGTTGAGCACACTCT 59.988 40.000 15.37 0.00 42.51 3.24
6221 6431 5.858381 TCATTTCTAGTTGAGCACACTCTT 58.142 37.500 0.00 0.00 43.85 2.85
6222 6432 5.698089 TCATTTCTAGTTGAGCACACTCTTG 59.302 40.000 0.00 0.00 43.85 3.02
6223 6433 4.937201 TTCTAGTTGAGCACACTCTTGA 57.063 40.909 0.00 0.00 43.85 3.02
6224 6434 4.511617 TCTAGTTGAGCACACTCTTGAG 57.488 45.455 0.00 0.00 43.85 3.02
6225 6435 3.891977 TCTAGTTGAGCACACTCTTGAGT 59.108 43.478 0.00 0.00 43.85 3.41
6226 6436 2.831333 AGTTGAGCACACTCTTGAGTG 58.169 47.619 24.17 24.17 43.85 3.51
6227 6437 2.432146 AGTTGAGCACACTCTTGAGTGA 59.568 45.455 30.20 10.52 43.85 3.41
6228 6438 2.799412 GTTGAGCACACTCTTGAGTGAG 59.201 50.000 30.20 24.49 43.85 3.51
6229 6439 1.342496 TGAGCACACTCTTGAGTGAGG 59.658 52.381 30.20 22.64 43.85 3.86
6230 6440 0.683973 AGCACACTCTTGAGTGAGGG 59.316 55.000 30.20 20.74 42.80 4.30
6231 6441 0.681733 GCACACTCTTGAGTGAGGGA 59.318 55.000 30.20 0.00 39.72 4.20
6232 6442 1.337635 GCACACTCTTGAGTGAGGGAG 60.338 57.143 30.20 17.23 39.72 4.30
6233 6443 2.242926 CACACTCTTGAGTGAGGGAGA 58.757 52.381 30.20 0.00 39.72 3.71
6234 6444 2.029470 CACACTCTTGAGTGAGGGAGAC 60.029 54.545 30.20 0.00 39.72 3.36
6235 6445 2.242926 CACTCTTGAGTGAGGGAGACA 58.757 52.381 22.18 0.00 39.72 3.41
6236 6446 2.630098 CACTCTTGAGTGAGGGAGACAA 59.370 50.000 22.18 0.00 39.72 3.18
6237 6447 3.070159 CACTCTTGAGTGAGGGAGACAAA 59.930 47.826 22.18 0.00 39.72 2.83
6238 6448 3.906846 ACTCTTGAGTGAGGGAGACAAAT 59.093 43.478 2.11 0.00 38.32 2.32
6239 6449 4.252073 CTCTTGAGTGAGGGAGACAAATG 58.748 47.826 0.00 0.00 0.00 2.32
6240 6450 3.648067 TCTTGAGTGAGGGAGACAAATGT 59.352 43.478 0.00 0.00 0.00 2.71
6241 6451 3.407424 TGAGTGAGGGAGACAAATGTG 57.593 47.619 0.00 0.00 0.00 3.21
6242 6452 2.705658 TGAGTGAGGGAGACAAATGTGT 59.294 45.455 0.00 0.00 42.10 3.72
6243 6453 3.070018 GAGTGAGGGAGACAAATGTGTG 58.930 50.000 0.00 0.00 38.41 3.82
6244 6454 2.154462 GTGAGGGAGACAAATGTGTGG 58.846 52.381 0.00 0.00 38.41 4.17
6245 6455 1.073763 TGAGGGAGACAAATGTGTGGG 59.926 52.381 0.00 0.00 38.41 4.61
6246 6456 1.073923 GAGGGAGACAAATGTGTGGGT 59.926 52.381 0.00 0.00 38.41 4.51
6247 6457 1.073923 AGGGAGACAAATGTGTGGGTC 59.926 52.381 0.00 0.00 38.41 4.46
6248 6458 1.534729 GGAGACAAATGTGTGGGTCC 58.465 55.000 0.00 0.00 38.41 4.46
6249 6459 1.156736 GAGACAAATGTGTGGGTCCG 58.843 55.000 0.00 0.00 38.41 4.79
6250 6460 0.250727 AGACAAATGTGTGGGTCCGG 60.251 55.000 0.00 0.00 38.41 5.14
6251 6461 1.228429 ACAAATGTGTGGGTCCGGG 60.228 57.895 0.00 0.00 36.31 5.73
6252 6462 1.228429 CAAATGTGTGGGTCCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
6253 6463 0.825840 CAAATGTGTGGGTCCGGGTT 60.826 55.000 0.00 0.00 0.00 4.11
6254 6464 0.772384 AAATGTGTGGGTCCGGGTTA 59.228 50.000 0.00 0.00 0.00 2.85
6255 6465 0.326927 AATGTGTGGGTCCGGGTTAG 59.673 55.000 0.00 0.00 0.00 2.34
6256 6466 0.838987 ATGTGTGGGTCCGGGTTAGT 60.839 55.000 0.00 0.00 0.00 2.24
6257 6467 1.004200 GTGTGGGTCCGGGTTAGTG 60.004 63.158 0.00 0.00 0.00 2.74
6258 6468 2.218454 TGTGGGTCCGGGTTAGTGG 61.218 63.158 0.00 0.00 0.00 4.00
6259 6469 2.204889 TGGGTCCGGGTTAGTGGT 59.795 61.111 0.00 0.00 0.00 4.16
6260 6470 1.914764 TGGGTCCGGGTTAGTGGTC 60.915 63.158 0.00 0.00 0.00 4.02
6261 6471 1.914764 GGGTCCGGGTTAGTGGTCA 60.915 63.158 0.00 0.00 0.00 4.02
6262 6472 1.482748 GGGTCCGGGTTAGTGGTCAA 61.483 60.000 0.00 0.00 0.00 3.18
6263 6473 0.397564 GGTCCGGGTTAGTGGTCAAA 59.602 55.000 0.00 0.00 0.00 2.69
6264 6474 1.202794 GGTCCGGGTTAGTGGTCAAAA 60.203 52.381 0.00 0.00 0.00 2.44
6265 6475 1.875514 GTCCGGGTTAGTGGTCAAAAC 59.124 52.381 0.00 0.00 0.00 2.43
6266 6476 1.489649 TCCGGGTTAGTGGTCAAAACA 59.510 47.619 0.00 0.00 0.00 2.83
6267 6477 2.092538 TCCGGGTTAGTGGTCAAAACAA 60.093 45.455 0.00 0.00 0.00 2.83
6268 6478 2.888414 CCGGGTTAGTGGTCAAAACAAT 59.112 45.455 0.00 0.00 0.00 2.71
6269 6479 3.305064 CCGGGTTAGTGGTCAAAACAATG 60.305 47.826 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 156 8.242053 TGGTTTTTAAGAAAAATGTACGTGACA 58.758 29.630 0.00 0.00 41.85 3.58
156 157 8.617761 TGGTTTTTAAGAAAAATGTACGTGAC 57.382 30.769 0.00 0.00 41.85 3.67
157 158 9.804758 AATGGTTTTTAAGAAAAATGTACGTGA 57.195 25.926 0.00 0.00 41.85 4.35
174 175 9.612066 ATGTTTGTGACATCTAAAATGGTTTTT 57.388 25.926 0.00 0.00 45.88 1.94
189 190 5.231779 CAGCATTCGAAAAATGTTTGTGACA 59.768 36.000 0.00 0.00 43.71 3.58
190 191 5.231991 ACAGCATTCGAAAAATGTTTGTGAC 59.768 36.000 0.00 0.00 31.45 3.67
191 192 5.347342 ACAGCATTCGAAAAATGTTTGTGA 58.653 33.333 0.00 0.00 31.45 3.58
192 193 5.231779 TGACAGCATTCGAAAAATGTTTGTG 59.768 36.000 0.00 0.00 32.18 3.33
193 194 5.347342 TGACAGCATTCGAAAAATGTTTGT 58.653 33.333 0.00 5.69 33.55 2.83
194 195 5.886715 TGACAGCATTCGAAAAATGTTTG 57.113 34.783 0.00 2.56 0.00 2.93
195 196 5.809562 TGTTGACAGCATTCGAAAAATGTTT 59.190 32.000 0.00 0.00 0.00 2.83
196 197 5.347342 TGTTGACAGCATTCGAAAAATGTT 58.653 33.333 0.00 0.00 0.00 2.71
197 198 4.930963 TGTTGACAGCATTCGAAAAATGT 58.069 34.783 0.00 7.08 0.00 2.71
198 199 5.860182 AGATGTTGACAGCATTCGAAAAATG 59.140 36.000 0.00 3.57 34.14 2.32
199 200 6.017400 AGATGTTGACAGCATTCGAAAAAT 57.983 33.333 0.00 0.00 34.14 1.82
200 201 5.437289 AGATGTTGACAGCATTCGAAAAA 57.563 34.783 0.00 0.00 34.14 1.94
201 202 5.437289 AAGATGTTGACAGCATTCGAAAA 57.563 34.783 0.00 0.00 34.14 2.29
202 203 5.437289 AAAGATGTTGACAGCATTCGAAA 57.563 34.783 0.00 0.00 34.14 3.46
203 204 5.437289 AAAAGATGTTGACAGCATTCGAA 57.563 34.783 6.22 0.00 34.14 3.71
204 205 5.437289 AAAAAGATGTTGACAGCATTCGA 57.563 34.783 6.22 0.00 34.14 3.71
205 206 7.379529 ACTTTAAAAAGATGTTGACAGCATTCG 59.620 33.333 6.22 0.00 39.31 3.34
206 207 8.579682 ACTTTAAAAAGATGTTGACAGCATTC 57.420 30.769 6.22 0.78 39.31 2.67
207 208 8.819974 CAACTTTAAAAAGATGTTGACAGCATT 58.180 29.630 6.22 0.00 39.98 3.56
208 209 7.981225 ACAACTTTAAAAAGATGTTGACAGCAT 59.019 29.630 18.70 4.24 45.86 3.79
209 210 7.319646 ACAACTTTAAAAAGATGTTGACAGCA 58.680 30.769 18.70 0.00 45.86 4.41
210 211 7.755582 ACAACTTTAAAAAGATGTTGACAGC 57.244 32.000 18.70 0.00 45.86 4.40
218 219 8.122952 AGAGTGTTCGACAACTTTAAAAAGATG 58.877 33.333 9.37 9.83 42.43 2.90
219 220 8.209917 AGAGTGTTCGACAACTTTAAAAAGAT 57.790 30.769 9.37 0.00 39.31 2.40
220 221 7.605410 AGAGTGTTCGACAACTTTAAAAAGA 57.395 32.000 9.37 0.00 39.31 2.52
221 222 8.669394 AAAGAGTGTTCGACAACTTTAAAAAG 57.331 30.769 13.69 0.90 36.22 2.27
222 223 9.465985 AAAAAGAGTGTTCGACAACTTTAAAAA 57.534 25.926 14.69 0.00 36.62 1.94
224 225 9.545611 GTAAAAAGAGTGTTCGACAACTTTAAA 57.454 29.630 14.69 0.00 36.62 1.52
225 226 8.719648 TGTAAAAAGAGTGTTCGACAACTTTAA 58.280 29.630 14.69 8.76 36.62 1.52
226 227 8.254178 TGTAAAAAGAGTGTTCGACAACTTTA 57.746 30.769 14.69 4.46 36.62 1.85
227 228 7.136289 TGTAAAAAGAGTGTTCGACAACTTT 57.864 32.000 0.97 7.66 38.02 2.66
228 229 6.730960 TGTAAAAAGAGTGTTCGACAACTT 57.269 33.333 0.97 3.01 33.17 2.66
229 230 6.920569 ATGTAAAAAGAGTGTTCGACAACT 57.079 33.333 0.00 0.00 33.17 3.16
230 231 6.413818 CCAATGTAAAAAGAGTGTTCGACAAC 59.586 38.462 0.00 0.00 0.00 3.32
231 232 6.316640 TCCAATGTAAAAAGAGTGTTCGACAA 59.683 34.615 0.00 0.00 0.00 3.18
232 233 5.818336 TCCAATGTAAAAAGAGTGTTCGACA 59.182 36.000 0.00 0.00 0.00 4.35
233 234 6.295039 TCCAATGTAAAAAGAGTGTTCGAC 57.705 37.500 0.00 0.00 0.00 4.20
234 235 6.708502 TCATCCAATGTAAAAAGAGTGTTCGA 59.291 34.615 0.00 0.00 0.00 3.71
235 236 6.898041 TCATCCAATGTAAAAAGAGTGTTCG 58.102 36.000 0.00 0.00 0.00 3.95
236 237 8.134895 TGTTCATCCAATGTAAAAAGAGTGTTC 58.865 33.333 0.00 0.00 0.00 3.18
237 238 8.006298 TGTTCATCCAATGTAAAAAGAGTGTT 57.994 30.769 0.00 0.00 0.00 3.32
238 239 7.581213 TGTTCATCCAATGTAAAAAGAGTGT 57.419 32.000 0.00 0.00 0.00 3.55
239 240 9.480053 AAATGTTCATCCAATGTAAAAAGAGTG 57.520 29.630 0.00 0.00 0.00 3.51
240 241 9.696917 GAAATGTTCATCCAATGTAAAAAGAGT 57.303 29.630 0.00 0.00 0.00 3.24
241 242 9.143631 GGAAATGTTCATCCAATGTAAAAAGAG 57.856 33.333 0.00 0.00 35.71 2.85
242 243 8.646004 TGGAAATGTTCATCCAATGTAAAAAGA 58.354 29.630 0.00 0.00 42.61 2.52
243 244 8.830201 TGGAAATGTTCATCCAATGTAAAAAG 57.170 30.769 0.00 0.00 42.61 2.27
327 328 9.982651 TCGTTGGGAACATTTTTCATTTTTATA 57.017 25.926 0.00 0.00 42.32 0.98
328 329 8.894768 TCGTTGGGAACATTTTTCATTTTTAT 57.105 26.923 0.00 0.00 42.32 1.40
329 330 8.718102 TTCGTTGGGAACATTTTTCATTTTTA 57.282 26.923 0.00 0.00 42.32 1.52
330 331 7.201688 CCTTCGTTGGGAACATTTTTCATTTTT 60.202 33.333 0.00 0.00 42.32 1.94
331 332 6.259829 CCTTCGTTGGGAACATTTTTCATTTT 59.740 34.615 0.00 0.00 42.32 1.82
332 333 5.757808 CCTTCGTTGGGAACATTTTTCATTT 59.242 36.000 0.00 0.00 42.32 2.32
333 334 5.296748 CCTTCGTTGGGAACATTTTTCATT 58.703 37.500 0.00 0.00 42.32 2.57
334 335 4.799255 GCCTTCGTTGGGAACATTTTTCAT 60.799 41.667 0.00 0.00 42.32 2.57
335 336 3.491792 GCCTTCGTTGGGAACATTTTTCA 60.492 43.478 0.00 0.00 42.32 2.69
336 337 3.057019 GCCTTCGTTGGGAACATTTTTC 58.943 45.455 0.00 0.00 42.32 2.29
337 338 2.544903 CGCCTTCGTTGGGAACATTTTT 60.545 45.455 0.00 0.00 42.32 1.94
338 339 1.000717 CGCCTTCGTTGGGAACATTTT 60.001 47.619 0.00 0.00 42.32 1.82
339 340 0.596082 CGCCTTCGTTGGGAACATTT 59.404 50.000 0.00 0.00 42.32 2.32
340 341 0.250553 TCGCCTTCGTTGGGAACATT 60.251 50.000 0.00 0.00 42.32 2.71
341 342 0.035439 ATCGCCTTCGTTGGGAACAT 60.035 50.000 0.00 0.00 42.32 2.71
342 343 0.672401 GATCGCCTTCGTTGGGAACA 60.672 55.000 0.00 0.00 39.83 3.18
343 344 1.366854 GGATCGCCTTCGTTGGGAAC 61.367 60.000 0.00 0.00 36.96 3.62
344 345 1.078708 GGATCGCCTTCGTTGGGAA 60.079 57.895 0.00 0.00 36.96 3.97
345 346 1.987855 AGGATCGCCTTCGTTGGGA 60.988 57.895 0.00 0.00 43.90 4.37
346 347 2.584608 AGGATCGCCTTCGTTGGG 59.415 61.111 0.00 0.00 43.90 4.12
357 358 1.519455 GCTCAACGTGGGAGGATCG 60.519 63.158 16.52 0.00 34.37 3.69
358 359 1.153349 GGCTCAACGTGGGAGGATC 60.153 63.158 16.52 3.32 32.96 3.36
359 360 2.990479 GGCTCAACGTGGGAGGAT 59.010 61.111 16.52 0.00 32.96 3.24
360 361 3.691342 CGGCTCAACGTGGGAGGA 61.691 66.667 16.52 0.00 32.96 3.71
361 362 3.691342 TCGGCTCAACGTGGGAGG 61.691 66.667 16.52 4.23 32.96 4.30
362 363 2.432628 GTCGGCTCAACGTGGGAG 60.433 66.667 11.96 11.96 35.47 4.30
363 364 1.180456 TAAGTCGGCTCAACGTGGGA 61.180 55.000 0.00 0.00 34.94 4.37
364 365 0.108329 ATAAGTCGGCTCAACGTGGG 60.108 55.000 0.00 0.00 34.94 4.61
365 366 1.722011 AATAAGTCGGCTCAACGTGG 58.278 50.000 0.00 0.00 34.94 4.94
366 367 3.306166 CCTAAATAAGTCGGCTCAACGTG 59.694 47.826 0.00 0.00 34.94 4.49
367 368 3.518590 CCTAAATAAGTCGGCTCAACGT 58.481 45.455 0.00 0.00 34.94 3.99
368 369 2.864343 CCCTAAATAAGTCGGCTCAACG 59.136 50.000 0.00 0.00 0.00 4.10
369 370 2.612672 GCCCTAAATAAGTCGGCTCAAC 59.387 50.000 0.00 0.00 36.65 3.18
370 371 2.740580 CGCCCTAAATAAGTCGGCTCAA 60.741 50.000 0.00 0.00 37.47 3.02
371 372 1.202486 CGCCCTAAATAAGTCGGCTCA 60.202 52.381 0.00 0.00 37.47 4.26
372 373 1.068127 TCGCCCTAAATAAGTCGGCTC 59.932 52.381 0.00 0.00 37.47 4.70
373 374 1.117150 TCGCCCTAAATAAGTCGGCT 58.883 50.000 0.00 0.00 37.47 5.52
374 375 1.215244 GTCGCCCTAAATAAGTCGGC 58.785 55.000 0.00 0.00 36.21 5.54
375 376 1.411612 AGGTCGCCCTAAATAAGTCGG 59.588 52.381 0.00 0.00 40.19 4.79
376 377 2.864343 CAAGGTCGCCCTAAATAAGTCG 59.136 50.000 0.00 0.00 41.56 4.18
377 378 4.120589 CTCAAGGTCGCCCTAAATAAGTC 58.879 47.826 0.00 0.00 41.56 3.01
378 379 3.118371 CCTCAAGGTCGCCCTAAATAAGT 60.118 47.826 0.00 0.00 41.56 2.24
379 380 3.467803 CCTCAAGGTCGCCCTAAATAAG 58.532 50.000 0.00 0.00 41.56 1.73
380 381 2.420967 GCCTCAAGGTCGCCCTAAATAA 60.421 50.000 0.00 0.00 41.56 1.40
381 382 1.140252 GCCTCAAGGTCGCCCTAAATA 59.860 52.381 0.00 0.00 41.56 1.40
382 383 0.107165 GCCTCAAGGTCGCCCTAAAT 60.107 55.000 0.00 0.00 41.56 1.40
383 384 1.298667 GCCTCAAGGTCGCCCTAAA 59.701 57.895 0.00 0.00 41.56 1.85
384 385 2.987125 GCCTCAAGGTCGCCCTAA 59.013 61.111 0.00 0.00 41.56 2.69
385 386 3.458163 CGCCTCAAGGTCGCCCTA 61.458 66.667 0.00 0.00 41.56 3.53
387 388 4.821589 CTCGCCTCAAGGTCGCCC 62.822 72.222 7.67 0.00 37.57 6.13
388 389 4.070552 ACTCGCCTCAAGGTCGCC 62.071 66.667 7.67 0.00 37.57 5.54
389 390 2.765250 TTCACTCGCCTCAAGGTCGC 62.765 60.000 7.67 0.00 37.57 5.19
390 391 1.009389 GTTCACTCGCCTCAAGGTCG 61.009 60.000 0.00 2.58 37.57 4.79
391 392 0.670854 GGTTCACTCGCCTCAAGGTC 60.671 60.000 0.00 0.00 37.57 3.85
392 393 1.371558 GGTTCACTCGCCTCAAGGT 59.628 57.895 0.00 0.00 37.57 3.50
393 394 0.036010 ATGGTTCACTCGCCTCAAGG 60.036 55.000 0.00 0.00 38.53 3.61
394 395 1.734465 GAATGGTTCACTCGCCTCAAG 59.266 52.381 0.00 0.00 0.00 3.02
395 396 1.071542 TGAATGGTTCACTCGCCTCAA 59.928 47.619 0.00 0.00 34.08 3.02
396 397 0.684535 TGAATGGTTCACTCGCCTCA 59.315 50.000 0.00 0.00 34.08 3.86
397 398 1.936547 GATGAATGGTTCACTCGCCTC 59.063 52.381 0.00 0.00 43.48 4.70
398 399 1.278985 TGATGAATGGTTCACTCGCCT 59.721 47.619 0.00 0.00 43.48 5.52
399 400 1.398390 GTGATGAATGGTTCACTCGCC 59.602 52.381 0.00 0.00 43.48 5.54
400 401 1.061131 CGTGATGAATGGTTCACTCGC 59.939 52.381 0.00 1.53 43.48 5.03
401 402 1.660607 CCGTGATGAATGGTTCACTCG 59.339 52.381 0.00 3.23 43.48 4.18
402 403 2.972625 TCCGTGATGAATGGTTCACTC 58.027 47.619 0.00 0.00 43.48 3.51
403 404 3.634397 ATCCGTGATGAATGGTTCACT 57.366 42.857 0.00 0.00 43.48 3.41
404 405 5.300752 AGATATCCGTGATGAATGGTTCAC 58.699 41.667 0.00 0.00 43.48 3.18
405 406 5.511373 GGAGATATCCGTGATGAATGGTTCA 60.511 44.000 0.00 0.00 45.01 3.18
406 407 4.932200 GGAGATATCCGTGATGAATGGTTC 59.068 45.833 0.00 0.00 36.21 3.62
407 408 4.594920 AGGAGATATCCGTGATGAATGGTT 59.405 41.667 0.00 0.00 36.21 3.67
408 409 4.163427 AGGAGATATCCGTGATGAATGGT 58.837 43.478 0.00 0.00 36.21 3.55
409 410 4.221482 TGAGGAGATATCCGTGATGAATGG 59.779 45.833 0.00 0.00 36.10 3.16
410 411 5.397142 TGAGGAGATATCCGTGATGAATG 57.603 43.478 0.00 0.00 34.28 2.67
411 412 5.568423 GCTTGAGGAGATATCCGTGATGAAT 60.568 44.000 0.00 0.00 34.28 2.57
412 413 4.262207 GCTTGAGGAGATATCCGTGATGAA 60.262 45.833 0.00 0.00 34.28 2.57
413 414 3.256879 GCTTGAGGAGATATCCGTGATGA 59.743 47.826 0.00 0.00 34.28 2.92
414 415 3.583806 GCTTGAGGAGATATCCGTGATG 58.416 50.000 0.00 0.00 34.28 3.07
415 416 2.564947 GGCTTGAGGAGATATCCGTGAT 59.435 50.000 0.00 0.00 34.28 3.06
416 417 1.964223 GGCTTGAGGAGATATCCGTGA 59.036 52.381 0.00 0.00 34.28 4.35
417 418 1.001406 GGGCTTGAGGAGATATCCGTG 59.999 57.143 0.00 0.00 34.28 4.94
418 419 1.343069 GGGCTTGAGGAGATATCCGT 58.657 55.000 0.00 0.00 34.28 4.69
419 420 0.610687 GGGGCTTGAGGAGATATCCG 59.389 60.000 0.00 0.00 34.28 4.18
420 421 1.734655 TGGGGCTTGAGGAGATATCC 58.265 55.000 0.00 0.00 0.00 2.59
421 422 4.685575 GCATATGGGGCTTGAGGAGATATC 60.686 50.000 4.56 0.00 0.00 1.63
422 423 3.201708 GCATATGGGGCTTGAGGAGATAT 59.798 47.826 4.56 0.00 0.00 1.63
423 424 2.573462 GCATATGGGGCTTGAGGAGATA 59.427 50.000 4.56 0.00 0.00 1.98
424 425 1.353694 GCATATGGGGCTTGAGGAGAT 59.646 52.381 4.56 0.00 0.00 2.75
425 426 0.767375 GCATATGGGGCTTGAGGAGA 59.233 55.000 4.56 0.00 0.00 3.71
426 427 0.251077 GGCATATGGGGCTTGAGGAG 60.251 60.000 4.56 0.00 0.00 3.69
427 428 0.992970 TGGCATATGGGGCTTGAGGA 60.993 55.000 4.56 0.00 0.00 3.71
428 429 0.113776 ATGGCATATGGGGCTTGAGG 59.886 55.000 0.00 0.00 0.00 3.86
429 430 1.542492 GATGGCATATGGGGCTTGAG 58.458 55.000 0.00 0.00 0.00 3.02
430 431 0.250858 CGATGGCATATGGGGCTTGA 60.251 55.000 0.00 0.00 0.00 3.02
431 432 0.250858 TCGATGGCATATGGGGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
432 433 0.037303 CTCGATGGCATATGGGGCTT 59.963 55.000 0.00 0.00 0.00 4.35
433 434 0.837691 TCTCGATGGCATATGGGGCT 60.838 55.000 0.00 0.00 0.00 5.19
434 435 0.392193 CTCTCGATGGCATATGGGGC 60.392 60.000 0.00 0.00 0.00 5.80
435 436 0.979665 ACTCTCGATGGCATATGGGG 59.020 55.000 0.00 0.00 0.00 4.96
436 437 2.847327 AACTCTCGATGGCATATGGG 57.153 50.000 0.00 0.00 0.00 4.00
437 438 3.070018 GGAAACTCTCGATGGCATATGG 58.930 50.000 0.00 0.00 0.00 2.74
438 439 3.732212 TGGAAACTCTCGATGGCATATG 58.268 45.455 0.00 0.00 0.00 1.78
439 440 4.321718 CATGGAAACTCTCGATGGCATAT 58.678 43.478 0.00 0.00 36.79 1.78
440 441 3.732212 CATGGAAACTCTCGATGGCATA 58.268 45.455 0.00 0.00 36.79 3.14
441 442 2.569059 CATGGAAACTCTCGATGGCAT 58.431 47.619 0.00 0.00 36.79 4.40
442 443 2.028420 CATGGAAACTCTCGATGGCA 57.972 50.000 0.00 0.00 36.79 4.92
445 446 1.959042 CCCCATGGAAACTCTCGATG 58.041 55.000 15.22 0.00 39.36 3.84
446 447 0.181350 GCCCCATGGAAACTCTCGAT 59.819 55.000 15.22 0.00 0.00 3.59
447 448 0.909610 AGCCCCATGGAAACTCTCGA 60.910 55.000 15.22 0.00 0.00 4.04
448 449 0.745845 CAGCCCCATGGAAACTCTCG 60.746 60.000 15.22 0.00 0.00 4.04
449 450 1.034292 GCAGCCCCATGGAAACTCTC 61.034 60.000 15.22 0.00 0.00 3.20
450 451 1.000396 GCAGCCCCATGGAAACTCT 60.000 57.895 15.22 0.00 0.00 3.24
451 452 1.000396 AGCAGCCCCATGGAAACTC 60.000 57.895 15.22 0.00 0.00 3.01
452 453 1.000396 GAGCAGCCCCATGGAAACT 60.000 57.895 15.22 4.12 0.00 2.66
453 454 0.899717 TTGAGCAGCCCCATGGAAAC 60.900 55.000 15.22 1.40 0.00 2.78
454 455 0.178938 TTTGAGCAGCCCCATGGAAA 60.179 50.000 15.22 0.00 0.00 3.13
455 456 0.178938 TTTTGAGCAGCCCCATGGAA 60.179 50.000 15.22 0.00 0.00 3.53
456 457 0.899717 GTTTTGAGCAGCCCCATGGA 60.900 55.000 15.22 0.00 0.00 3.41
457 458 1.593265 GTTTTGAGCAGCCCCATGG 59.407 57.895 4.14 4.14 0.00 3.66
458 459 1.593265 GGTTTTGAGCAGCCCCATG 59.407 57.895 0.00 0.00 0.00 3.66
459 460 1.978617 CGGTTTTGAGCAGCCCCAT 60.979 57.895 0.00 0.00 0.00 4.00
460 461 2.597217 CGGTTTTGAGCAGCCCCA 60.597 61.111 0.00 0.00 0.00 4.96
461 462 3.373565 CCGGTTTTGAGCAGCCCC 61.374 66.667 0.00 0.00 0.00 5.80
462 463 2.282180 TCCGGTTTTGAGCAGCCC 60.282 61.111 0.00 0.00 0.00 5.19
463 464 3.267974 CTCCGGTTTTGAGCAGCC 58.732 61.111 0.00 0.00 0.00 4.85
489 490 1.221414 GACACGAATATGGGCTGAGC 58.779 55.000 0.00 0.00 0.00 4.26
492 493 1.541233 GGAGGACACGAATATGGGCTG 60.541 57.143 0.00 0.00 0.00 4.85
511 512 2.203209 GTTGATGGGCGGGCTAGG 60.203 66.667 0.26 0.00 0.00 3.02
515 516 3.757248 ATCTCGTTGATGGGCGGGC 62.757 63.158 0.00 0.00 33.43 6.13
521 522 1.405463 TGGACTCGATCTCGTTGATGG 59.595 52.381 0.00 0.00 40.80 3.51
523 524 3.218453 AGATGGACTCGATCTCGTTGAT 58.782 45.455 0.00 0.00 40.80 2.57
599 619 4.684134 GGCTTCTTGGCTGGCCCA 62.684 66.667 9.28 0.00 43.51 5.36
600 620 4.684134 TGGCTTCTTGGCTGGCCC 62.684 66.667 9.28 0.00 43.50 5.80
608 628 2.890371 GGGCATGCTGGCTTCTTG 59.110 61.111 18.92 0.00 43.20 3.02
662 682 4.641645 CAAGCCTGGGGTCGTGCA 62.642 66.667 0.00 0.00 0.00 4.57
663 683 4.643387 ACAAGCCTGGGGTCGTGC 62.643 66.667 0.00 0.00 0.00 5.34
664 684 2.113139 AACAAGCCTGGGGTCGTG 59.887 61.111 0.00 0.00 0.00 4.35
666 686 3.365265 GCAACAAGCCTGGGGTCG 61.365 66.667 0.00 0.00 37.23 4.79
667 687 2.203480 TGCAACAAGCCTGGGGTC 60.203 61.111 0.00 0.00 44.83 4.46
669 689 2.993264 CCTGCAACAAGCCTGGGG 60.993 66.667 0.00 0.00 44.83 4.96
725 762 7.929245 GGGCTGTTTAAAAATAAAAGTTCAGGA 59.071 33.333 0.00 0.00 0.00 3.86
726 763 7.713073 TGGGCTGTTTAAAAATAAAAGTTCAGG 59.287 33.333 0.00 0.00 0.00 3.86
727 764 8.655651 TGGGCTGTTTAAAAATAAAAGTTCAG 57.344 30.769 0.00 0.00 0.00 3.02
732 769 9.729023 CCTTTTTGGGCTGTTTAAAAATAAAAG 57.271 29.630 0.00 0.00 34.11 2.27
819 888 4.450122 GCACAGCATGGCACGTCG 62.450 66.667 0.00 0.00 43.62 5.12
1067 1138 0.321671 ACGACTCACACTTCCATGGG 59.678 55.000 13.02 0.00 0.00 4.00
1091 1162 2.474816 GGTAGGCGAAATCTAGCAGTG 58.525 52.381 0.00 0.00 35.84 3.66
1402 1473 1.485066 CAAGGGTACAGGATAAGCGGT 59.515 52.381 0.00 0.00 0.00 5.68
1538 1609 0.179111 GTCCGAGCGAATGATCCACA 60.179 55.000 0.00 0.00 0.00 4.17
1540 1611 1.326951 TGGTCCGAGCGAATGATCCA 61.327 55.000 0.00 0.00 0.00 3.41
1541 1612 0.179084 TTGGTCCGAGCGAATGATCC 60.179 55.000 0.00 0.00 0.00 3.36
1543 1614 1.656652 CTTTGGTCCGAGCGAATGAT 58.343 50.000 0.68 0.00 0.00 2.45
1553 1624 1.077787 TATGCAGGGCTTTGGTCCG 60.078 57.895 0.00 0.00 43.12 4.79
1563 1634 2.634815 ATCAAGAGTGCTATGCAGGG 57.365 50.000 0.00 0.00 40.08 4.45
1564 1635 3.693085 ACAAATCAAGAGTGCTATGCAGG 59.307 43.478 0.00 0.00 40.08 4.85
1569 1643 7.334090 ACACTATGACAAATCAAGAGTGCTAT 58.666 34.615 16.62 2.61 46.82 2.97
1588 1662 5.437060 ACAACTGAACTCCAACAACACTAT 58.563 37.500 0.00 0.00 0.00 2.12
1624 1698 7.669098 CAACATTAGCACAAATCAATAACAGC 58.331 34.615 0.00 0.00 0.00 4.40
1635 1709 2.557924 CTCCCTGCAACATTAGCACAAA 59.442 45.455 0.00 0.00 37.02 2.83
1643 1717 3.788227 TTGTAGACTCCCTGCAACATT 57.212 42.857 0.00 0.00 41.53 2.71
1689 1763 2.886124 GCAGCGGCTACGGAGAAC 60.886 66.667 0.26 0.00 41.36 3.01
1696 1770 1.912371 GACACTTTGGCAGCGGCTAC 61.912 60.000 9.17 0.00 40.87 3.58
1725 1799 5.728471 TCTAGTGCATCTTTCTTCTCCTTG 58.272 41.667 0.00 0.00 0.00 3.61
2003 2078 5.020132 TCCAAAAGGAAAGGAACAAAGACA 58.980 37.500 0.00 0.00 0.00 3.41
2026 2101 7.816995 GCGATGTTCAAGATAAGATTAGGAGAT 59.183 37.037 0.00 0.00 0.00 2.75
2055 2130 5.639082 GCTACTTTTTCATTTCAATGTGGGG 59.361 40.000 0.00 0.00 37.65 4.96
2091 2166 6.281405 TCCGTTTAGAGATCTTAGATTTGGC 58.719 40.000 0.00 0.00 0.00 4.52
2149 2229 7.951347 AGAAGCTAAGACCATCATTCAATTT 57.049 32.000 0.00 0.00 0.00 1.82
2200 2280 3.527533 TGATATGTGAAGTGTAACCGCC 58.472 45.455 0.00 0.00 37.80 6.13
2420 2503 3.111853 TCACGAGCTGTTGAAGTGAAT 57.888 42.857 0.00 0.00 38.66 2.57
2434 2517 4.616802 GTGGTAATTTTTGCACATCACGAG 59.383 41.667 0.00 0.00 0.00 4.18
2444 2527 4.364860 ACGAAACCAGTGGTAATTTTTGC 58.635 39.130 17.09 0.00 33.12 3.68
2545 2628 5.623956 TGAAAGGAAGTAACAACTCCTGA 57.376 39.130 0.00 0.00 0.00 3.86
2754 2837 3.736126 GCAATGAAAGCAATACCTCTGGC 60.736 47.826 0.00 0.00 0.00 4.85
2942 3025 3.276857 GCAGTGACACTGGATGATTGAT 58.723 45.455 31.47 0.00 46.01 2.57
3096 3179 1.207791 GGGCTGAGGAGAGGATTTCA 58.792 55.000 0.00 0.00 0.00 2.69
3162 3245 2.416836 CGAAGTCGCTGGGATAGACAAA 60.417 50.000 0.00 0.00 37.36 2.83
3472 3557 2.893424 ACCAGTTTCAGCCATGGAAAT 58.107 42.857 18.40 0.00 36.71 2.17
3841 4014 2.948979 CACCCAGAAGCTAACAACAACA 59.051 45.455 0.00 0.00 0.00 3.33
4189 4362 7.343691 TCGATTGACATTTGTTTGCAAAATTC 58.656 30.769 14.67 2.08 46.23 2.17
4231 4404 2.816087 CAATCTCCATTCCATAAGCGGG 59.184 50.000 0.00 0.00 0.00 6.13
4277 4451 2.961526 AAAGACTACGCGGTCATCAT 57.038 45.000 12.47 0.00 38.57 2.45
4278 4452 3.011818 TCTAAAGACTACGCGGTCATCA 58.988 45.455 12.47 0.00 38.57 3.07
4279 4453 3.687572 TCTAAAGACTACGCGGTCATC 57.312 47.619 12.47 2.04 38.57 2.92
4631 4807 6.976934 TGACTATGACTATGTAAGCCATGA 57.023 37.500 0.00 0.00 34.86 3.07
4691 4868 9.511144 AATTAAGGACGTTAAAACACAGAAAAG 57.489 29.630 4.57 0.00 34.21 2.27
4828 5005 3.070018 CACTTGCTTCACCTAAGGTCAG 58.930 50.000 0.00 0.00 35.58 3.51
4875 5052 1.304713 TAGTGGGAGGACACCGACC 60.305 63.158 0.00 0.00 42.28 4.79
4962 5139 0.170339 TCTGTATGGACGACACAGCG 59.830 55.000 0.00 0.00 39.60 5.18
5015 5193 9.838339 AGATACCAAAGATACACCATAGAAAAG 57.162 33.333 0.00 0.00 0.00 2.27
5023 5201 7.194112 TGAATGAGATACCAAAGATACACCA 57.806 36.000 0.00 0.00 0.00 4.17
5073 5251 9.567776 TTATTCTAACCATGAGAGTGTTCAAAA 57.432 29.630 0.00 0.00 0.00 2.44
5080 5258 6.257411 CAGCACTTATTCTAACCATGAGAGTG 59.743 42.308 0.00 0.00 0.00 3.51
5213 5394 1.741401 CACATCACGCCACGTCCAT 60.741 57.895 0.00 0.00 38.32 3.41
5214 5395 1.807495 TACACATCACGCCACGTCCA 61.807 55.000 0.00 0.00 38.32 4.02
5215 5396 1.076533 CTACACATCACGCCACGTCC 61.077 60.000 0.00 0.00 38.32 4.79
5216 5397 1.683790 GCTACACATCACGCCACGTC 61.684 60.000 0.00 0.00 38.32 4.34
5256 5437 8.479280 CGAGTTTCAAAATGTACCAAAATTCAG 58.521 33.333 0.00 0.00 0.00 3.02
5310 5491 3.513515 TGCCACAAATTACCTCCATTTCC 59.486 43.478 0.00 0.00 0.00 3.13
5425 5606 2.107552 ACCCTGGACATTTCCGAAAAGA 59.892 45.455 3.19 0.00 46.37 2.52
5563 5745 3.249189 TGGGTTTCTGCCGCCTCT 61.249 61.111 0.00 0.00 0.00 3.69
5658 5858 3.011144 TGGAAGCACCTGATATTTTCCCA 59.989 43.478 1.91 0.00 39.86 4.37
5682 5882 2.440980 GTCAAGGGAGCATGGGGC 60.441 66.667 0.00 0.00 45.30 5.80
5695 5895 0.181587 TCCAAAAGCTCCCGTGTCAA 59.818 50.000 0.00 0.00 0.00 3.18
5709 5909 0.886938 TGCGCTCGTTGGATTCCAAA 60.887 50.000 19.57 4.73 45.73 3.28
5714 5914 2.436646 CCCTGCGCTCGTTGGATT 60.437 61.111 9.73 0.00 0.00 3.01
5741 5941 7.040686 CCTCTTCGAAGGGTTTTCTCAATTTTA 60.041 37.037 23.14 0.00 32.35 1.52
5760 5960 3.326747 ACCGAAATTTCAGACCTCTTCG 58.673 45.455 17.99 0.70 36.36 3.79
5780 5980 2.962253 GCGTCGCAGCCTATGGAC 60.962 66.667 13.44 0.00 0.00 4.02
5785 5990 2.413351 GATGAGCGTCGCAGCCTA 59.587 61.111 21.09 0.57 38.01 3.93
5795 6000 4.463515 ATCATGAATTGAACGATGAGCG 57.536 40.909 0.00 0.00 40.36 5.03
5807 6012 3.885297 CTGGGCCGTTAGAATCATGAATT 59.115 43.478 0.00 0.00 0.00 2.17
5810 6015 1.140852 CCTGGGCCGTTAGAATCATGA 59.859 52.381 0.00 0.00 0.00 3.07
5813 6018 0.830648 CTCCTGGGCCGTTAGAATCA 59.169 55.000 0.00 0.00 0.00 2.57
5817 6022 2.038975 AGCTCCTGGGCCGTTAGA 59.961 61.111 0.00 0.00 0.00 2.10
5819 6024 3.081409 GGAGCTCCTGGGCCGTTA 61.081 66.667 26.25 0.00 0.00 3.18
5829 6034 2.125961 ACCCACGATACGGAGCTCC 61.126 63.158 23.79 23.79 0.00 4.70
5832 6037 2.585247 GCACCCACGATACGGAGC 60.585 66.667 0.00 0.00 0.00 4.70
5837 6042 0.532862 CTCCCATGCACCCACGATAC 60.533 60.000 0.00 0.00 0.00 2.24
5842 6048 3.064324 GCACTCCCATGCACCCAC 61.064 66.667 0.00 0.00 45.39 4.61
5883 6089 9.118300 CAGCTAGATTCATAGAATTTCCTTGTT 57.882 33.333 0.00 0.00 0.00 2.83
5884 6090 8.489489 TCAGCTAGATTCATAGAATTTCCTTGT 58.511 33.333 0.00 0.00 0.00 3.16
5885 6091 8.899427 TCAGCTAGATTCATAGAATTTCCTTG 57.101 34.615 0.00 0.00 0.00 3.61
5886 6092 9.911788 TTTCAGCTAGATTCATAGAATTTCCTT 57.088 29.630 0.00 0.00 0.00 3.36
5893 6099 7.984050 CCACTTCTTTCAGCTAGATTCATAGAA 59.016 37.037 0.00 0.00 0.00 2.10
5894 6100 7.124901 ACCACTTCTTTCAGCTAGATTCATAGA 59.875 37.037 0.00 0.00 0.00 1.98
5895 6101 7.271511 ACCACTTCTTTCAGCTAGATTCATAG 58.728 38.462 0.00 0.00 0.00 2.23
5896 6102 7.093333 TGACCACTTCTTTCAGCTAGATTCATA 60.093 37.037 0.00 0.00 0.00 2.15
5897 6103 6.059787 ACCACTTCTTTCAGCTAGATTCAT 57.940 37.500 0.00 0.00 0.00 2.57
5898 6104 5.012046 TGACCACTTCTTTCAGCTAGATTCA 59.988 40.000 0.00 0.00 0.00 2.57
5899 6105 5.350091 GTGACCACTTCTTTCAGCTAGATTC 59.650 44.000 0.00 0.00 0.00 2.52
5900 6106 5.241662 GTGACCACTTCTTTCAGCTAGATT 58.758 41.667 0.00 0.00 0.00 2.40
5901 6107 4.619394 CGTGACCACTTCTTTCAGCTAGAT 60.619 45.833 0.00 0.00 0.00 1.98
5902 6108 3.305403 CGTGACCACTTCTTTCAGCTAGA 60.305 47.826 0.00 0.00 0.00 2.43
5903 6109 2.989840 CGTGACCACTTCTTTCAGCTAG 59.010 50.000 0.00 0.00 0.00 3.42
5904 6110 2.288825 CCGTGACCACTTCTTTCAGCTA 60.289 50.000 0.00 0.00 0.00 3.32
5905 6111 1.541233 CCGTGACCACTTCTTTCAGCT 60.541 52.381 0.00 0.00 0.00 4.24
5906 6112 0.868406 CCGTGACCACTTCTTTCAGC 59.132 55.000 0.00 0.00 0.00 4.26
5907 6113 2.135933 GACCGTGACCACTTCTTTCAG 58.864 52.381 0.00 0.00 0.00 3.02
5908 6114 1.760613 AGACCGTGACCACTTCTTTCA 59.239 47.619 0.00 0.00 0.00 2.69
5909 6115 2.405172 GAGACCGTGACCACTTCTTTC 58.595 52.381 0.00 0.00 0.00 2.62
5910 6116 1.070289 GGAGACCGTGACCACTTCTTT 59.930 52.381 0.00 0.00 0.00 2.52
5911 6117 0.680061 GGAGACCGTGACCACTTCTT 59.320 55.000 0.00 0.00 0.00 2.52
5912 6118 0.178958 AGGAGACCGTGACCACTTCT 60.179 55.000 0.00 0.47 0.00 2.85
5913 6119 0.680061 AAGGAGACCGTGACCACTTC 59.320 55.000 0.00 0.00 0.00 3.01
5914 6120 2.005370 TAAGGAGACCGTGACCACTT 57.995 50.000 0.00 0.00 0.00 3.16
5915 6121 2.005370 TTAAGGAGACCGTGACCACT 57.995 50.000 0.00 0.00 0.00 4.00
5916 6122 4.460948 TTATTAAGGAGACCGTGACCAC 57.539 45.455 0.00 0.00 0.00 4.16
5931 6137 7.209471 AGAGTGCGGTTGTGATTTTTATTAA 57.791 32.000 0.00 0.00 0.00 1.40
5933 6139 5.616866 CGAGAGTGCGGTTGTGATTTTTATT 60.617 40.000 0.00 0.00 0.00 1.40
5976 6183 1.611491 CCCTTTTGCTTCGGCTACAAA 59.389 47.619 0.00 0.00 42.37 2.83
5984 6191 5.393962 CAGAAATTACTCCCTTTTGCTTCG 58.606 41.667 0.00 0.00 0.00 3.79
5986 6193 4.835056 AGCAGAAATTACTCCCTTTTGCTT 59.165 37.500 0.00 0.00 36.05 3.91
5987 6194 4.411013 AGCAGAAATTACTCCCTTTTGCT 58.589 39.130 0.00 0.00 34.80 3.91
5988 6195 4.790765 AGCAGAAATTACTCCCTTTTGC 57.209 40.909 0.00 0.00 0.00 3.68
5989 6196 6.148811 TCGTTAGCAGAAATTACTCCCTTTTG 59.851 38.462 0.00 0.00 0.00 2.44
5994 6201 4.032558 CGTTCGTTAGCAGAAATTACTCCC 59.967 45.833 0.00 0.00 0.00 4.30
6030 6237 3.306225 GGCTTTGTTCATTTGGAGCATGA 60.306 43.478 0.00 0.00 36.56 3.07
6032 6239 2.353011 CGGCTTTGTTCATTTGGAGCAT 60.353 45.455 0.00 0.00 36.56 3.79
6033 6240 1.000385 CGGCTTTGTTCATTTGGAGCA 60.000 47.619 0.00 0.00 34.67 4.26
6037 6244 4.570369 AGAAAAACGGCTTTGTTCATTTGG 59.430 37.500 9.07 0.00 0.00 3.28
6040 6247 3.555547 GCAGAAAAACGGCTTTGTTCATT 59.444 39.130 9.07 0.00 36.79 2.57
6066 6276 7.656137 TCGGCTTATTAAGATTGGTAAGCTTAG 59.344 37.037 6.38 0.00 45.08 2.18
6078 6288 5.497474 ACAAGTTGGTCGGCTTATTAAGAT 58.503 37.500 7.96 0.00 0.00 2.40
6079 6289 4.901868 ACAAGTTGGTCGGCTTATTAAGA 58.098 39.130 7.96 0.00 0.00 2.10
6086 6296 2.817844 GGATTAACAAGTTGGTCGGCTT 59.182 45.455 7.96 0.00 0.00 4.35
6091 6301 4.339814 TGTTGGTGGATTAACAAGTTGGTC 59.660 41.667 7.96 0.03 34.17 4.02
6093 6303 4.927978 TGTTGGTGGATTAACAAGTTGG 57.072 40.909 7.96 0.00 34.17 3.77
6156 6366 4.043037 AGAAAAGGTAGGAGCGTATTCG 57.957 45.455 0.00 0.00 40.37 3.34
6157 6367 5.265350 AGAGAAAAGGTAGGAGCGTATTC 57.735 43.478 0.00 0.00 0.00 1.75
6158 6368 6.980416 ATAGAGAAAAGGTAGGAGCGTATT 57.020 37.500 0.00 0.00 0.00 1.89
6159 6369 6.980416 AATAGAGAAAAGGTAGGAGCGTAT 57.020 37.500 0.00 0.00 0.00 3.06
6160 6370 6.606395 AGAAATAGAGAAAAGGTAGGAGCGTA 59.394 38.462 0.00 0.00 0.00 4.42
6161 6371 5.422650 AGAAATAGAGAAAAGGTAGGAGCGT 59.577 40.000 0.00 0.00 0.00 5.07
6162 6372 5.908341 AGAAATAGAGAAAAGGTAGGAGCG 58.092 41.667 0.00 0.00 0.00 5.03
6163 6373 8.014070 ACTAGAAATAGAGAAAAGGTAGGAGC 57.986 38.462 0.00 0.00 0.00 4.70
6164 6374 9.810545 CAACTAGAAATAGAGAAAAGGTAGGAG 57.189 37.037 0.00 0.00 0.00 3.69
6165 6375 9.543231 TCAACTAGAAATAGAGAAAAGGTAGGA 57.457 33.333 0.00 0.00 0.00 2.94
6166 6376 9.810545 CTCAACTAGAAATAGAGAAAAGGTAGG 57.189 37.037 0.00 0.00 0.00 3.18
6167 6377 9.308318 GCTCAACTAGAAATAGAGAAAAGGTAG 57.692 37.037 0.00 0.00 0.00 3.18
6168 6378 8.812972 TGCTCAACTAGAAATAGAGAAAAGGTA 58.187 33.333 0.00 0.00 0.00 3.08
6169 6379 7.604545 GTGCTCAACTAGAAATAGAGAAAAGGT 59.395 37.037 0.00 0.00 0.00 3.50
6170 6380 7.604164 TGTGCTCAACTAGAAATAGAGAAAAGG 59.396 37.037 0.00 0.00 0.00 3.11
6171 6381 8.439286 GTGTGCTCAACTAGAAATAGAGAAAAG 58.561 37.037 0.00 0.00 0.00 2.27
6172 6382 8.150945 AGTGTGCTCAACTAGAAATAGAGAAAA 58.849 33.333 0.00 0.00 0.00 2.29
6173 6383 7.671302 AGTGTGCTCAACTAGAAATAGAGAAA 58.329 34.615 0.00 0.00 0.00 2.52
6174 6384 7.233389 AGTGTGCTCAACTAGAAATAGAGAA 57.767 36.000 0.00 0.00 0.00 2.87
6175 6385 6.842437 AGTGTGCTCAACTAGAAATAGAGA 57.158 37.500 0.00 0.00 0.00 3.10
6190 6400 4.092675 GCTCAACTAGAAATGAGTGTGCTC 59.907 45.833 18.96 0.00 43.91 4.26
6191 6401 3.999663 GCTCAACTAGAAATGAGTGTGCT 59.000 43.478 18.96 0.00 43.91 4.40
6192 6402 3.748048 TGCTCAACTAGAAATGAGTGTGC 59.252 43.478 18.96 10.81 43.91 4.57
6193 6403 4.751600 TGTGCTCAACTAGAAATGAGTGTG 59.248 41.667 18.96 3.67 43.91 3.82
6194 6404 4.752101 GTGTGCTCAACTAGAAATGAGTGT 59.248 41.667 18.96 0.00 43.91 3.55
6195 6405 4.993584 AGTGTGCTCAACTAGAAATGAGTG 59.006 41.667 18.96 4.42 43.91 3.51
6196 6406 5.011533 AGAGTGTGCTCAACTAGAAATGAGT 59.988 40.000 18.96 6.06 43.91 3.41
6197 6407 5.477510 AGAGTGTGCTCAACTAGAAATGAG 58.522 41.667 15.78 15.78 44.00 2.90
6198 6408 5.474578 AGAGTGTGCTCAACTAGAAATGA 57.525 39.130 0.00 0.00 44.00 2.57
6199 6409 5.698089 TCAAGAGTGTGCTCAACTAGAAATG 59.302 40.000 0.00 0.00 44.00 2.32
6200 6410 5.858381 TCAAGAGTGTGCTCAACTAGAAAT 58.142 37.500 0.00 0.00 44.00 2.17
6201 6411 5.163405 ACTCAAGAGTGTGCTCAACTAGAAA 60.163 40.000 1.20 0.00 44.00 2.52
6202 6412 4.342378 ACTCAAGAGTGTGCTCAACTAGAA 59.658 41.667 1.20 0.00 44.00 2.10
6203 6413 3.891977 ACTCAAGAGTGTGCTCAACTAGA 59.108 43.478 1.20 0.00 44.00 2.43
6204 6414 4.250116 ACTCAAGAGTGTGCTCAACTAG 57.750 45.455 1.20 0.00 44.00 2.57
6216 6426 2.685106 TGTCTCCCTCACTCAAGAGT 57.315 50.000 0.00 0.00 43.61 3.24
6217 6427 4.252073 CATTTGTCTCCCTCACTCAAGAG 58.748 47.826 0.00 0.00 35.39 2.85
6218 6428 3.648067 ACATTTGTCTCCCTCACTCAAGA 59.352 43.478 0.00 0.00 0.00 3.02
6219 6429 3.750130 CACATTTGTCTCCCTCACTCAAG 59.250 47.826 0.00 0.00 0.00 3.02
6220 6430 3.136443 ACACATTTGTCTCCCTCACTCAA 59.864 43.478 0.00 0.00 0.00 3.02
6221 6431 2.705658 ACACATTTGTCTCCCTCACTCA 59.294 45.455 0.00 0.00 0.00 3.41
6222 6432 3.070018 CACACATTTGTCTCCCTCACTC 58.930 50.000 0.00 0.00 31.66 3.51
6223 6433 2.224621 CCACACATTTGTCTCCCTCACT 60.225 50.000 0.00 0.00 31.66 3.41
6224 6434 2.154462 CCACACATTTGTCTCCCTCAC 58.846 52.381 0.00 0.00 31.66 3.51
6225 6435 1.073763 CCCACACATTTGTCTCCCTCA 59.926 52.381 0.00 0.00 31.66 3.86
6226 6436 1.073923 ACCCACACATTTGTCTCCCTC 59.926 52.381 0.00 0.00 31.66 4.30
6227 6437 1.073923 GACCCACACATTTGTCTCCCT 59.926 52.381 0.00 0.00 31.66 4.20
6228 6438 1.534729 GACCCACACATTTGTCTCCC 58.465 55.000 0.00 0.00 31.66 4.30
6229 6439 1.534729 GGACCCACACATTTGTCTCC 58.465 55.000 0.00 0.00 31.66 3.71
6230 6440 1.156736 CGGACCCACACATTTGTCTC 58.843 55.000 0.00 0.00 31.66 3.36
6231 6441 0.250727 CCGGACCCACACATTTGTCT 60.251 55.000 0.00 0.00 31.66 3.41
6232 6442 1.241315 CCCGGACCCACACATTTGTC 61.241 60.000 0.73 0.00 31.66 3.18
6233 6443 1.228429 CCCGGACCCACACATTTGT 60.228 57.895 0.73 0.00 35.84 2.83
6234 6444 0.825840 AACCCGGACCCACACATTTG 60.826 55.000 0.73 0.00 0.00 2.32
6235 6445 0.772384 TAACCCGGACCCACACATTT 59.228 50.000 0.73 0.00 0.00 2.32
6236 6446 0.326927 CTAACCCGGACCCACACATT 59.673 55.000 0.73 0.00 0.00 2.71
6237 6447 0.838987 ACTAACCCGGACCCACACAT 60.839 55.000 0.73 0.00 0.00 3.21
6238 6448 1.459921 ACTAACCCGGACCCACACA 60.460 57.895 0.73 0.00 0.00 3.72
6239 6449 1.004200 CACTAACCCGGACCCACAC 60.004 63.158 0.73 0.00 0.00 3.82
6240 6450 2.218454 CCACTAACCCGGACCCACA 61.218 63.158 0.73 0.00 0.00 4.17
6241 6451 2.176314 GACCACTAACCCGGACCCAC 62.176 65.000 0.73 0.00 0.00 4.61
6242 6452 1.914764 GACCACTAACCCGGACCCA 60.915 63.158 0.73 0.00 0.00 4.51
6243 6453 1.482748 TTGACCACTAACCCGGACCC 61.483 60.000 0.73 0.00 0.00 4.46
6244 6454 0.397564 TTTGACCACTAACCCGGACC 59.602 55.000 0.73 0.00 0.00 4.46
6245 6455 1.875514 GTTTTGACCACTAACCCGGAC 59.124 52.381 0.73 0.00 0.00 4.79
6246 6456 1.489649 TGTTTTGACCACTAACCCGGA 59.510 47.619 0.73 0.00 0.00 5.14
6247 6457 1.970092 TGTTTTGACCACTAACCCGG 58.030 50.000 0.00 0.00 0.00 5.73
6248 6458 3.896122 CATTGTTTTGACCACTAACCCG 58.104 45.455 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.