Multiple sequence alignment - TraesCS4A01G081600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G081600 chr4A 100.000 3002 0 0 1 3002 84898610 84895609 0.000000e+00 5544.0
1 TraesCS4A01G081600 chr4A 90.343 321 27 4 2133 2450 216015312 216015631 4.630000e-113 418.0
2 TraesCS4A01G081600 chr4D 91.939 2171 115 18 1 2140 379573326 379575467 0.000000e+00 2985.0
3 TraesCS4A01G081600 chr4D 89.697 330 23 9 2450 2772 379575469 379575794 7.750000e-111 411.0
4 TraesCS4A01G081600 chr4B 91.506 2178 105 19 9 2135 466785461 466787609 0.000000e+00 2924.0
5 TraesCS4A01G081600 chr4B 85.308 211 20 7 2574 2778 466787816 466788021 1.090000e-49 207.0
6 TraesCS4A01G081600 chr4B 87.117 163 20 1 2840 3002 466788030 466788191 1.840000e-42 183.0
7 TraesCS4A01G081600 chr2A 90.062 322 30 2 2133 2452 373501896 373501575 1.660000e-112 416.0
8 TraesCS4A01G081600 chr2A 89.905 317 30 2 2135 2449 672789221 672789537 1.000000e-109 407.0
9 TraesCS4A01G081600 chr3A 90.506 316 27 2 2136 2448 89664944 89665259 5.990000e-112 414.0
10 TraesCS4A01G081600 chr3A 89.474 323 33 1 2132 2453 715173679 715173357 1.000000e-109 407.0
11 TraesCS4A01G081600 chr3A 89.474 323 30 4 2133 2452 55175359 55175038 3.600000e-109 405.0
12 TraesCS4A01G081600 chr1A 89.937 318 30 2 2133 2448 21569497 21569814 2.790000e-110 409.0
13 TraesCS4A01G081600 chr1A 89.688 320 31 2 2133 2450 496849380 496849699 1.000000e-109 407.0
14 TraesCS4A01G081600 chr5A 89.905 317 30 2 2137 2451 4982772 4982456 1.000000e-109 407.0
15 TraesCS4A01G081600 chr2D 80.537 149 28 1 1 149 561877807 561877954 2.450000e-21 113.0
16 TraesCS4A01G081600 chr3B 89.091 55 6 0 2935 2989 808674942 808674888 5.370000e-08 69.4
17 TraesCS4A01G081600 chr2B 100.000 28 0 0 1943 1970 9131607 9131580 5.000000e-03 52.8
18 TraesCS4A01G081600 chr6B 96.429 28 0 1 1943 1969 10354083 10354110 9.000000e-01 45.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G081600 chr4A 84895609 84898610 3001 True 5544.000000 5544 100.000 1 3002 1 chr4A.!!$R1 3001
1 TraesCS4A01G081600 chr4D 379573326 379575794 2468 False 1698.000000 2985 90.818 1 2772 2 chr4D.!!$F1 2771
2 TraesCS4A01G081600 chr4B 466785461 466788191 2730 False 1104.666667 2924 87.977 9 3002 3 chr4B.!!$F1 2993

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
207 208 0.111253 AGGAAAAGTGGGCAGGACAG 59.889 55.0 0.0 0.0 0.00 3.51 F
933 1005 0.179166 GACTGAGACTGAGAGCAGCG 60.179 60.0 0.0 0.0 46.26 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1845 2.125512 CTCGGCGGGTCCTTCTTG 60.126 66.667 7.21 0.0 0.00 3.02 R
2414 2494 0.482446 ACACTTGGCAAGGGAATGGA 59.518 50.000 34.66 0.0 35.35 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.693120 TTCCACTGTTTACATGTTGGTTAATA 57.307 30.769 2.30 0.00 0.00 0.98
110 111 8.068893 TCACTACGAATGAAGAAGTTGTTTAC 57.931 34.615 0.00 0.00 0.00 2.01
133 134 7.628769 ACTGTGCATATTTGTCATGTTGATA 57.371 32.000 0.00 0.00 0.00 2.15
207 208 0.111253 AGGAAAAGTGGGCAGGACAG 59.889 55.000 0.00 0.00 0.00 3.51
211 212 1.435256 AAAGTGGGCAGGACAGTACT 58.565 50.000 0.00 0.00 0.00 2.73
213 214 2.320681 AGTGGGCAGGACAGTACTTA 57.679 50.000 0.00 0.00 0.00 2.24
235 263 4.804608 TGTTATGTTGGTTGTTCACTCG 57.195 40.909 0.00 0.00 0.00 4.18
258 286 5.740569 CGTTTGAGACCGAGATAATAAACGA 59.259 40.000 11.95 0.00 46.84 3.85
259 287 6.417044 CGTTTGAGACCGAGATAATAAACGAT 59.583 38.462 11.95 0.00 46.84 3.73
260 288 7.588854 CGTTTGAGACCGAGATAATAAACGATA 59.411 37.037 11.95 0.00 46.84 2.92
261 289 9.241317 GTTTGAGACCGAGATAATAAACGATAA 57.759 33.333 0.00 0.00 0.00 1.75
262 290 9.976511 TTTGAGACCGAGATAATAAACGATAAT 57.023 29.630 0.00 0.00 0.00 1.28
306 334 5.463061 TCAAATTTAAGAGCAACAAAGCAGC 59.537 36.000 0.00 0.00 36.85 5.25
330 358 1.156736 GGTACACTTGTTGCGAGCAT 58.843 50.000 0.00 0.00 0.00 3.79
339 367 2.493035 TGTTGCGAGCATTCTCTTTCA 58.507 42.857 0.00 0.00 37.19 2.69
397 425 2.022129 CACCACTCGTCACTTCGCC 61.022 63.158 0.00 0.00 0.00 5.54
399 427 3.470567 CACTCGTCACTTCGCCGC 61.471 66.667 0.00 0.00 0.00 6.53
505 552 2.822255 TGGCGCGCCATTAAGGTC 60.822 61.111 46.88 19.91 41.89 3.85
506 553 2.822255 GGCGCGCCATTAAGGTCA 60.822 61.111 43.55 0.00 40.61 4.02
507 554 2.403378 GGCGCGCCATTAAGGTCAA 61.403 57.895 43.55 0.00 40.61 3.18
508 555 1.724582 GGCGCGCCATTAAGGTCAAT 61.725 55.000 43.55 0.00 40.61 2.57
509 556 0.317020 GCGCGCCATTAAGGTCAATC 60.317 55.000 23.24 0.00 40.61 2.67
552 602 2.647158 GGGGTATCGATCCCTCGCC 61.647 68.421 23.69 16.48 44.65 5.54
553 603 2.567049 GGTATCGATCCCTCGCCG 59.433 66.667 0.00 0.00 44.65 6.46
555 605 3.371063 TATCGATCCCTCGCCGCC 61.371 66.667 0.00 0.00 44.65 6.13
594 644 2.027605 CGTCCATCCATCCGTCCG 59.972 66.667 0.00 0.00 0.00 4.79
595 645 2.782222 CGTCCATCCATCCGTCCGT 61.782 63.158 0.00 0.00 0.00 4.69
596 646 1.067582 GTCCATCCATCCGTCCGTC 59.932 63.158 0.00 0.00 0.00 4.79
602 654 0.686441 TCCATCCGTCCGTCCAATCT 60.686 55.000 0.00 0.00 0.00 2.40
609 661 1.475280 CGTCCGTCCAATCTCAGGTAA 59.525 52.381 0.00 0.00 0.00 2.85
614 666 4.469945 TCCGTCCAATCTCAGGTAAGAATT 59.530 41.667 0.00 0.00 0.00 2.17
616 668 5.395768 CCGTCCAATCTCAGGTAAGAATTCT 60.396 44.000 0.88 0.88 0.00 2.40
618 670 5.819901 GTCCAATCTCAGGTAAGAATTCTGG 59.180 44.000 9.17 2.21 0.00 3.86
619 671 5.726308 TCCAATCTCAGGTAAGAATTCTGGA 59.274 40.000 9.17 4.70 0.00 3.86
629 681 2.949705 GAATTCTGGAGGGGCTCGGC 62.950 65.000 0.00 0.00 0.00 5.54
731 803 3.284449 GACAACCCACCACCACGC 61.284 66.667 0.00 0.00 0.00 5.34
815 887 2.333014 CTTCTCAAAGCCGAGTCTCAC 58.667 52.381 0.00 0.00 34.46 3.51
933 1005 0.179166 GACTGAGACTGAGAGCAGCG 60.179 60.000 0.00 0.00 46.26 5.18
972 1044 3.804193 CCTCGCCGGCAGCTTTTC 61.804 66.667 28.98 0.00 40.39 2.29
999 1071 4.394712 CGGTGGGTGGTGAGAGCC 62.395 72.222 0.00 0.00 0.00 4.70
1170 1242 3.437795 AACGACGTCCCGCTCGAT 61.438 61.111 10.58 0.00 35.62 3.59
1557 1629 2.423446 CTGCGGGGGCTGATACTC 59.577 66.667 0.00 0.00 0.00 2.59
2009 2081 2.124983 CAGGCTGTGATCGGTGGG 60.125 66.667 6.28 0.00 0.00 4.61
2135 2215 3.385384 CTGACGGGCTGAGGCTCA 61.385 66.667 17.68 17.68 39.29 4.26
2136 2216 3.655810 CTGACGGGCTGAGGCTCAC 62.656 68.421 14.43 10.59 39.29 3.51
2137 2217 3.695606 GACGGGCTGAGGCTCACA 61.696 66.667 14.43 0.00 39.29 3.58
2138 2218 3.655810 GACGGGCTGAGGCTCACAG 62.656 68.421 14.43 8.38 39.29 3.66
2143 2223 2.341543 CTGAGGCTCACAGCGTGT 59.658 61.111 14.43 0.00 43.62 4.49
2144 2224 1.301244 CTGAGGCTCACAGCGTGTT 60.301 57.895 14.43 0.00 43.62 3.32
2145 2225 0.882042 CTGAGGCTCACAGCGTGTTT 60.882 55.000 14.43 0.00 43.62 2.83
2146 2226 1.159713 TGAGGCTCACAGCGTGTTTG 61.160 55.000 14.43 3.08 43.62 2.93
2147 2227 1.845809 GAGGCTCACAGCGTGTTTGG 61.846 60.000 10.25 1.24 43.62 3.28
2148 2228 2.186826 GGCTCACAGCGTGTTTGGT 61.187 57.895 8.22 0.00 43.62 3.67
2149 2229 1.724582 GGCTCACAGCGTGTTTGGTT 61.725 55.000 8.22 0.00 43.62 3.67
2150 2230 0.100503 GCTCACAGCGTGTTTGGTTT 59.899 50.000 8.22 0.00 34.79 3.27
2151 2231 1.332375 GCTCACAGCGTGTTTGGTTTA 59.668 47.619 8.22 0.00 34.79 2.01
2152 2232 2.602217 GCTCACAGCGTGTTTGGTTTAG 60.602 50.000 8.22 0.00 34.79 1.85
2153 2233 2.869801 CTCACAGCGTGTTTGGTTTAGA 59.130 45.455 8.22 0.00 34.79 2.10
2154 2234 2.869801 TCACAGCGTGTTTGGTTTAGAG 59.130 45.455 8.22 0.00 34.79 2.43
2155 2235 2.032030 CACAGCGTGTTTGGTTTAGAGG 60.032 50.000 1.24 0.00 0.00 3.69
2156 2236 2.158871 ACAGCGTGTTTGGTTTAGAGGA 60.159 45.455 0.00 0.00 0.00 3.71
2157 2237 2.875933 CAGCGTGTTTGGTTTAGAGGAA 59.124 45.455 0.00 0.00 0.00 3.36
2158 2238 3.502211 CAGCGTGTTTGGTTTAGAGGAAT 59.498 43.478 0.00 0.00 0.00 3.01
2159 2239 4.023193 CAGCGTGTTTGGTTTAGAGGAATT 60.023 41.667 0.00 0.00 0.00 2.17
2160 2240 5.180492 CAGCGTGTTTGGTTTAGAGGAATTA 59.820 40.000 0.00 0.00 0.00 1.40
2161 2241 5.766174 AGCGTGTTTGGTTTAGAGGAATTAA 59.234 36.000 0.00 0.00 0.00 1.40
2162 2242 6.263617 AGCGTGTTTGGTTTAGAGGAATTAAA 59.736 34.615 0.00 0.00 0.00 1.52
2163 2243 6.581166 GCGTGTTTGGTTTAGAGGAATTAAAG 59.419 38.462 0.00 0.00 0.00 1.85
2164 2244 7.520937 GCGTGTTTGGTTTAGAGGAATTAAAGA 60.521 37.037 0.00 0.00 0.00 2.52
2165 2245 8.512138 CGTGTTTGGTTTAGAGGAATTAAAGAT 58.488 33.333 0.00 0.00 0.00 2.40
2166 2246 9.626045 GTGTTTGGTTTAGAGGAATTAAAGATG 57.374 33.333 0.00 0.00 0.00 2.90
2167 2247 8.802267 TGTTTGGTTTAGAGGAATTAAAGATGG 58.198 33.333 0.00 0.00 0.00 3.51
2168 2248 7.954666 TTGGTTTAGAGGAATTAAAGATGGG 57.045 36.000 0.00 0.00 0.00 4.00
2169 2249 6.431722 TGGTTTAGAGGAATTAAAGATGGGG 58.568 40.000 0.00 0.00 0.00 4.96
2170 2250 6.218730 TGGTTTAGAGGAATTAAAGATGGGGA 59.781 38.462 0.00 0.00 0.00 4.81
2171 2251 7.123383 GGTTTAGAGGAATTAAAGATGGGGAA 58.877 38.462 0.00 0.00 0.00 3.97
2172 2252 7.785028 GGTTTAGAGGAATTAAAGATGGGGAAT 59.215 37.037 0.00 0.00 0.00 3.01
2173 2253 8.633561 GTTTAGAGGAATTAAAGATGGGGAATG 58.366 37.037 0.00 0.00 0.00 2.67
2174 2254 6.347061 AGAGGAATTAAAGATGGGGAATGT 57.653 37.500 0.00 0.00 0.00 2.71
2175 2255 6.131961 AGAGGAATTAAAGATGGGGAATGTG 58.868 40.000 0.00 0.00 0.00 3.21
2176 2256 6.068853 AGAGGAATTAAAGATGGGGAATGTGA 60.069 38.462 0.00 0.00 0.00 3.58
2177 2257 6.131961 AGGAATTAAAGATGGGGAATGTGAG 58.868 40.000 0.00 0.00 0.00 3.51
2178 2258 5.893824 GGAATTAAAGATGGGGAATGTGAGT 59.106 40.000 0.00 0.00 0.00 3.41
2179 2259 6.381133 GGAATTAAAGATGGGGAATGTGAGTT 59.619 38.462 0.00 0.00 0.00 3.01
2180 2260 7.559897 GGAATTAAAGATGGGGAATGTGAGTTA 59.440 37.037 0.00 0.00 0.00 2.24
2181 2261 8.893563 AATTAAAGATGGGGAATGTGAGTTAA 57.106 30.769 0.00 0.00 0.00 2.01
2182 2262 7.938140 TTAAAGATGGGGAATGTGAGTTAAG 57.062 36.000 0.00 0.00 0.00 1.85
2183 2263 4.510167 AGATGGGGAATGTGAGTTAAGG 57.490 45.455 0.00 0.00 0.00 2.69
2184 2264 3.203040 AGATGGGGAATGTGAGTTAAGGG 59.797 47.826 0.00 0.00 0.00 3.95
2185 2265 2.638325 TGGGGAATGTGAGTTAAGGGA 58.362 47.619 0.00 0.00 0.00 4.20
2186 2266 3.197983 TGGGGAATGTGAGTTAAGGGAT 58.802 45.455 0.00 0.00 0.00 3.85
2187 2267 4.376223 TGGGGAATGTGAGTTAAGGGATA 58.624 43.478 0.00 0.00 0.00 2.59
2188 2268 4.791334 TGGGGAATGTGAGTTAAGGGATAA 59.209 41.667 0.00 0.00 0.00 1.75
2189 2269 5.104109 TGGGGAATGTGAGTTAAGGGATAAG 60.104 44.000 0.00 0.00 0.00 1.73
2190 2270 5.377478 GGGAATGTGAGTTAAGGGATAAGG 58.623 45.833 0.00 0.00 0.00 2.69
2191 2271 5.132144 GGGAATGTGAGTTAAGGGATAAGGA 59.868 44.000 0.00 0.00 0.00 3.36
2192 2272 6.292150 GGAATGTGAGTTAAGGGATAAGGAG 58.708 44.000 0.00 0.00 0.00 3.69
2193 2273 6.099845 GGAATGTGAGTTAAGGGATAAGGAGA 59.900 42.308 0.00 0.00 0.00 3.71
2194 2274 7.202139 GGAATGTGAGTTAAGGGATAAGGAGAT 60.202 40.741 0.00 0.00 0.00 2.75
2195 2275 7.698163 ATGTGAGTTAAGGGATAAGGAGATT 57.302 36.000 0.00 0.00 0.00 2.40
2196 2276 8.798975 ATGTGAGTTAAGGGATAAGGAGATTA 57.201 34.615 0.00 0.00 0.00 1.75
2197 2277 8.618240 TGTGAGTTAAGGGATAAGGAGATTAA 57.382 34.615 0.00 0.00 0.00 1.40
2198 2278 9.053472 TGTGAGTTAAGGGATAAGGAGATTAAA 57.947 33.333 0.00 0.00 0.00 1.52
2199 2279 9.901172 GTGAGTTAAGGGATAAGGAGATTAAAA 57.099 33.333 0.00 0.00 0.00 1.52
2205 2285 8.768501 AAGGGATAAGGAGATTAAAAATCCAC 57.231 34.615 0.00 0.00 35.45 4.02
2206 2286 8.119062 AGGGATAAGGAGATTAAAAATCCACT 57.881 34.615 0.00 0.00 35.45 4.00
2207 2287 8.001292 AGGGATAAGGAGATTAAAAATCCACTG 58.999 37.037 0.00 0.00 35.45 3.66
2208 2288 7.780271 GGGATAAGGAGATTAAAAATCCACTGT 59.220 37.037 0.00 0.00 35.45 3.55
2209 2289 9.190317 GGATAAGGAGATTAAAAATCCACTGTT 57.810 33.333 6.71 0.00 35.45 3.16
2212 2292 8.477419 AAGGAGATTAAAAATCCACTGTTTGA 57.523 30.769 6.71 0.00 35.45 2.69
2213 2293 8.655935 AGGAGATTAAAAATCCACTGTTTGAT 57.344 30.769 6.71 0.00 35.45 2.57
2214 2294 9.093458 AGGAGATTAAAAATCCACTGTTTGATT 57.907 29.630 6.71 0.00 35.45 2.57
2221 2301 8.477419 AAAAATCCACTGTTTGATTAGAAGGA 57.523 30.769 3.52 0.00 31.20 3.36
2222 2302 8.477419 AAAATCCACTGTTTGATTAGAAGGAA 57.523 30.769 3.52 0.00 31.20 3.36
2223 2303 8.655935 AAATCCACTGTTTGATTAGAAGGAAT 57.344 30.769 3.52 0.00 31.20 3.01
2224 2304 7.636150 ATCCACTGTTTGATTAGAAGGAATG 57.364 36.000 0.00 0.00 0.00 2.67
2225 2305 5.945784 TCCACTGTTTGATTAGAAGGAATGG 59.054 40.000 0.00 0.00 0.00 3.16
2226 2306 5.945784 CCACTGTTTGATTAGAAGGAATGGA 59.054 40.000 0.00 0.00 0.00 3.41
2227 2307 6.434028 CCACTGTTTGATTAGAAGGAATGGAA 59.566 38.462 0.00 0.00 0.00 3.53
2228 2308 7.362401 CCACTGTTTGATTAGAAGGAATGGAAG 60.362 40.741 0.00 0.00 0.00 3.46
2229 2309 7.175641 CACTGTTTGATTAGAAGGAATGGAAGT 59.824 37.037 0.00 0.00 0.00 3.01
2230 2310 7.725844 ACTGTTTGATTAGAAGGAATGGAAGTT 59.274 33.333 0.00 0.00 0.00 2.66
2231 2311 8.477419 TGTTTGATTAGAAGGAATGGAAGTTT 57.523 30.769 0.00 0.00 0.00 2.66
2232 2312 9.581289 TGTTTGATTAGAAGGAATGGAAGTTTA 57.419 29.630 0.00 0.00 0.00 2.01
2235 2315 9.807921 TTGATTAGAAGGAATGGAAGTTTAAGT 57.192 29.630 0.00 0.00 0.00 2.24
2236 2316 9.231297 TGATTAGAAGGAATGGAAGTTTAAGTG 57.769 33.333 0.00 0.00 0.00 3.16
2237 2317 7.996098 TTAGAAGGAATGGAAGTTTAAGTGG 57.004 36.000 0.00 0.00 0.00 4.00
2238 2318 5.325239 AGAAGGAATGGAAGTTTAAGTGGG 58.675 41.667 0.00 0.00 0.00 4.61
2239 2319 5.074515 AGAAGGAATGGAAGTTTAAGTGGGA 59.925 40.000 0.00 0.00 0.00 4.37
2240 2320 5.333566 AGGAATGGAAGTTTAAGTGGGAA 57.666 39.130 0.00 0.00 0.00 3.97
2241 2321 5.325239 AGGAATGGAAGTTTAAGTGGGAAG 58.675 41.667 0.00 0.00 0.00 3.46
2242 2322 4.462834 GGAATGGAAGTTTAAGTGGGAAGG 59.537 45.833 0.00 0.00 0.00 3.46
2243 2323 4.741928 ATGGAAGTTTAAGTGGGAAGGT 57.258 40.909 0.00 0.00 0.00 3.50
2244 2324 3.827722 TGGAAGTTTAAGTGGGAAGGTG 58.172 45.455 0.00 0.00 0.00 4.00
2245 2325 3.460340 TGGAAGTTTAAGTGGGAAGGTGA 59.540 43.478 0.00 0.00 0.00 4.02
2246 2326 3.819337 GGAAGTTTAAGTGGGAAGGTGAC 59.181 47.826 0.00 0.00 0.00 3.67
2248 2328 4.086706 AGTTTAAGTGGGAAGGTGACTG 57.913 45.455 0.00 0.00 42.68 3.51
2249 2329 3.146847 GTTTAAGTGGGAAGGTGACTGG 58.853 50.000 0.00 0.00 42.68 4.00
2250 2330 2.409064 TAAGTGGGAAGGTGACTGGA 57.591 50.000 0.00 0.00 42.68 3.86
2251 2331 1.518367 AAGTGGGAAGGTGACTGGAA 58.482 50.000 0.00 0.00 42.68 3.53
2252 2332 1.059913 AGTGGGAAGGTGACTGGAAG 58.940 55.000 0.00 0.00 42.68 3.46
2264 2344 3.437642 CTGGAAGTTGGGAAAGCCA 57.562 52.632 0.00 0.00 35.15 4.75
2265 2345 1.703411 CTGGAAGTTGGGAAAGCCAA 58.297 50.000 0.00 0.00 35.15 4.52
2266 2346 2.250924 CTGGAAGTTGGGAAAGCCAAT 58.749 47.619 0.00 0.00 35.15 3.16
2267 2347 2.634453 CTGGAAGTTGGGAAAGCCAATT 59.366 45.455 0.00 0.00 35.15 2.32
2268 2348 2.632512 TGGAAGTTGGGAAAGCCAATTC 59.367 45.455 0.00 0.00 35.15 2.17
2269 2349 2.028112 GGAAGTTGGGAAAGCCAATTCC 60.028 50.000 2.36 2.36 46.74 3.01
2274 2354 1.890174 GGAAAGCCAATTCCCACCG 59.110 57.895 2.82 0.00 42.57 4.94
2275 2355 0.610785 GGAAAGCCAATTCCCACCGA 60.611 55.000 2.82 0.00 42.57 4.69
2276 2356 1.474330 GAAAGCCAATTCCCACCGAT 58.526 50.000 0.00 0.00 0.00 4.18
2277 2357 1.824852 GAAAGCCAATTCCCACCGATT 59.175 47.619 0.00 0.00 0.00 3.34
2278 2358 1.937191 AAGCCAATTCCCACCGATTT 58.063 45.000 0.00 0.00 0.00 2.17
2279 2359 1.474330 AGCCAATTCCCACCGATTTC 58.526 50.000 0.00 0.00 0.00 2.17
2280 2360 1.005924 AGCCAATTCCCACCGATTTCT 59.994 47.619 0.00 0.00 0.00 2.52
2281 2361 1.824852 GCCAATTCCCACCGATTTCTT 59.175 47.619 0.00 0.00 0.00 2.52
2282 2362 2.233676 GCCAATTCCCACCGATTTCTTT 59.766 45.455 0.00 0.00 0.00 2.52
2283 2363 3.676049 GCCAATTCCCACCGATTTCTTTC 60.676 47.826 0.00 0.00 0.00 2.62
2284 2364 3.119137 CCAATTCCCACCGATTTCTTTCC 60.119 47.826 0.00 0.00 0.00 3.13
2285 2365 2.961531 TTCCCACCGATTTCTTTCCA 57.038 45.000 0.00 0.00 0.00 3.53
2286 2366 2.489938 TCCCACCGATTTCTTTCCAG 57.510 50.000 0.00 0.00 0.00 3.86
2287 2367 1.004277 TCCCACCGATTTCTTTCCAGG 59.996 52.381 0.00 0.00 0.00 4.45
2288 2368 1.463674 CCACCGATTTCTTTCCAGGG 58.536 55.000 0.00 0.00 0.00 4.45
2289 2369 1.004277 CCACCGATTTCTTTCCAGGGA 59.996 52.381 0.00 0.00 0.00 4.20
2290 2370 2.357154 CCACCGATTTCTTTCCAGGGAT 60.357 50.000 0.00 0.00 0.00 3.85
2291 2371 3.118038 CCACCGATTTCTTTCCAGGGATA 60.118 47.826 0.00 0.00 0.00 2.59
2292 2372 3.877508 CACCGATTTCTTTCCAGGGATAC 59.122 47.826 0.00 0.00 0.00 2.24
2309 2389 4.377897 GGATACCCTGTTAATTCGTGAGG 58.622 47.826 0.00 0.00 0.00 3.86
2310 2390 4.100498 GGATACCCTGTTAATTCGTGAGGA 59.900 45.833 0.00 0.00 0.00 3.71
2311 2391 3.611766 ACCCTGTTAATTCGTGAGGAG 57.388 47.619 0.00 0.00 0.00 3.69
2312 2392 3.170717 ACCCTGTTAATTCGTGAGGAGA 58.829 45.455 0.00 0.00 0.00 3.71
2313 2393 3.195825 ACCCTGTTAATTCGTGAGGAGAG 59.804 47.826 0.00 0.00 0.00 3.20
2314 2394 3.195825 CCCTGTTAATTCGTGAGGAGAGT 59.804 47.826 0.00 0.00 0.00 3.24
2315 2395 4.322801 CCCTGTTAATTCGTGAGGAGAGTT 60.323 45.833 0.00 0.00 0.00 3.01
2316 2396 5.238583 CCTGTTAATTCGTGAGGAGAGTTT 58.761 41.667 0.00 0.00 0.00 2.66
2317 2397 5.701290 CCTGTTAATTCGTGAGGAGAGTTTT 59.299 40.000 0.00 0.00 0.00 2.43
2318 2398 6.872020 CCTGTTAATTCGTGAGGAGAGTTTTA 59.128 38.462 0.00 0.00 0.00 1.52
2319 2399 7.549488 CCTGTTAATTCGTGAGGAGAGTTTTAT 59.451 37.037 0.00 0.00 0.00 1.40
2320 2400 8.475331 TGTTAATTCGTGAGGAGAGTTTTATC 57.525 34.615 0.00 0.00 0.00 1.75
2321 2401 7.548075 TGTTAATTCGTGAGGAGAGTTTTATCC 59.452 37.037 0.00 0.00 34.80 2.59
2323 2403 7.419711 AATTCGTGAGGAGAGTTTTATCCTA 57.580 36.000 0.00 0.00 44.98 2.94
2324 2404 7.604657 ATTCGTGAGGAGAGTTTTATCCTAT 57.395 36.000 0.00 0.00 44.98 2.57
2325 2405 6.392625 TCGTGAGGAGAGTTTTATCCTATG 57.607 41.667 0.00 0.00 44.98 2.23
2326 2406 4.985409 CGTGAGGAGAGTTTTATCCTATGC 59.015 45.833 0.00 0.00 44.98 3.14
2327 2407 5.301555 GTGAGGAGAGTTTTATCCTATGCC 58.698 45.833 0.00 0.00 44.98 4.40
2328 2408 4.968719 TGAGGAGAGTTTTATCCTATGCCA 59.031 41.667 0.00 0.00 44.98 4.92
2329 2409 5.428457 TGAGGAGAGTTTTATCCTATGCCAA 59.572 40.000 0.00 0.00 44.98 4.52
2330 2410 6.101734 TGAGGAGAGTTTTATCCTATGCCAAT 59.898 38.462 0.00 0.00 44.98 3.16
2331 2411 6.915786 AGGAGAGTTTTATCCTATGCCAATT 58.084 36.000 0.00 0.00 43.19 2.32
2332 2412 7.001073 AGGAGAGTTTTATCCTATGCCAATTC 58.999 38.462 0.00 0.00 43.19 2.17
2333 2413 7.001073 GGAGAGTTTTATCCTATGCCAATTCT 58.999 38.462 0.00 0.00 31.77 2.40
2334 2414 7.174080 GGAGAGTTTTATCCTATGCCAATTCTC 59.826 40.741 0.00 0.00 31.77 2.87
2335 2415 7.577303 AGAGTTTTATCCTATGCCAATTCTCA 58.423 34.615 0.00 0.00 0.00 3.27
2336 2416 8.223330 AGAGTTTTATCCTATGCCAATTCTCAT 58.777 33.333 0.00 0.00 0.00 2.90
2337 2417 8.401490 AGTTTTATCCTATGCCAATTCTCATC 57.599 34.615 0.00 0.00 0.00 2.92
2338 2418 8.000709 AGTTTTATCCTATGCCAATTCTCATCA 58.999 33.333 0.00 0.00 0.00 3.07
2339 2419 8.800332 GTTTTATCCTATGCCAATTCTCATCAT 58.200 33.333 0.00 0.00 0.00 2.45
2342 2422 9.623000 TTATCCTATGCCAATTCTCATCATATG 57.377 33.333 0.00 0.00 0.00 1.78
2343 2423 5.884232 TCCTATGCCAATTCTCATCATATGC 59.116 40.000 0.00 0.00 0.00 3.14
2344 2424 5.067413 CCTATGCCAATTCTCATCATATGCC 59.933 44.000 0.00 0.00 0.00 4.40
2345 2425 3.834938 TGCCAATTCTCATCATATGCCA 58.165 40.909 0.00 0.00 0.00 4.92
2346 2426 4.216708 TGCCAATTCTCATCATATGCCAA 58.783 39.130 0.00 0.00 0.00 4.52
2347 2427 4.650131 TGCCAATTCTCATCATATGCCAAA 59.350 37.500 0.00 0.00 0.00 3.28
2348 2428 4.986659 GCCAATTCTCATCATATGCCAAAC 59.013 41.667 0.00 0.00 0.00 2.93
2349 2429 5.452216 GCCAATTCTCATCATATGCCAAACA 60.452 40.000 0.00 0.00 0.00 2.83
2350 2430 6.575267 CCAATTCTCATCATATGCCAAACAA 58.425 36.000 0.00 0.00 0.00 2.83
2351 2431 6.700081 CCAATTCTCATCATATGCCAAACAAG 59.300 38.462 0.00 0.00 0.00 3.16
2352 2432 7.417003 CCAATTCTCATCATATGCCAAACAAGA 60.417 37.037 0.00 0.00 0.00 3.02
2353 2433 7.649533 ATTCTCATCATATGCCAAACAAGAA 57.350 32.000 0.00 1.28 0.00 2.52
2354 2434 7.465353 TTCTCATCATATGCCAAACAAGAAA 57.535 32.000 0.00 0.00 0.00 2.52
2355 2435 7.465353 TCTCATCATATGCCAAACAAGAAAA 57.535 32.000 0.00 0.00 0.00 2.29
2356 2436 8.070034 TCTCATCATATGCCAAACAAGAAAAT 57.930 30.769 0.00 0.00 0.00 1.82
2357 2437 7.977293 TCTCATCATATGCCAAACAAGAAAATG 59.023 33.333 0.00 0.00 0.00 2.32
2358 2438 7.838884 TCATCATATGCCAAACAAGAAAATGA 58.161 30.769 0.00 0.00 0.00 2.57
2359 2439 8.312564 TCATCATATGCCAAACAAGAAAATGAA 58.687 29.630 0.00 0.00 0.00 2.57
2360 2440 8.937884 CATCATATGCCAAACAAGAAAATGAAA 58.062 29.630 0.00 0.00 0.00 2.69
2361 2441 8.537049 TCATATGCCAAACAAGAAAATGAAAG 57.463 30.769 0.00 0.00 0.00 2.62
2362 2442 8.149647 TCATATGCCAAACAAGAAAATGAAAGT 58.850 29.630 0.00 0.00 0.00 2.66
2363 2443 9.421806 CATATGCCAAACAAGAAAATGAAAGTA 57.578 29.630 0.00 0.00 0.00 2.24
2364 2444 9.995003 ATATGCCAAACAAGAAAATGAAAGTAA 57.005 25.926 0.00 0.00 0.00 2.24
2365 2445 8.729805 ATGCCAAACAAGAAAATGAAAGTAAA 57.270 26.923 0.00 0.00 0.00 2.01
2366 2446 8.553459 TGCCAAACAAGAAAATGAAAGTAAAA 57.447 26.923 0.00 0.00 0.00 1.52
2367 2447 9.003658 TGCCAAACAAGAAAATGAAAGTAAAAA 57.996 25.926 0.00 0.00 0.00 1.94
2381 2461 7.826690 TGAAAGTAAAAATCTACCTTCCATGC 58.173 34.615 0.00 0.00 0.00 4.06
2382 2462 6.775594 AAGTAAAAATCTACCTTCCATGCC 57.224 37.500 0.00 0.00 0.00 4.40
2383 2463 6.079712 AGTAAAAATCTACCTTCCATGCCT 57.920 37.500 0.00 0.00 0.00 4.75
2384 2464 7.208064 AGTAAAAATCTACCTTCCATGCCTA 57.792 36.000 0.00 0.00 0.00 3.93
2385 2465 7.639378 AGTAAAAATCTACCTTCCATGCCTAA 58.361 34.615 0.00 0.00 0.00 2.69
2386 2466 8.282256 AGTAAAAATCTACCTTCCATGCCTAAT 58.718 33.333 0.00 0.00 0.00 1.73
2387 2467 7.588497 AAAAATCTACCTTCCATGCCTAATC 57.412 36.000 0.00 0.00 0.00 1.75
2388 2468 4.917906 ATCTACCTTCCATGCCTAATCC 57.082 45.455 0.00 0.00 0.00 3.01
2389 2469 2.979678 TCTACCTTCCATGCCTAATCCC 59.020 50.000 0.00 0.00 0.00 3.85
2390 2470 1.912862 ACCTTCCATGCCTAATCCCT 58.087 50.000 0.00 0.00 0.00 4.20
2391 2471 2.217776 ACCTTCCATGCCTAATCCCTT 58.782 47.619 0.00 0.00 0.00 3.95
2392 2472 2.587307 ACCTTCCATGCCTAATCCCTTT 59.413 45.455 0.00 0.00 0.00 3.11
2393 2473 3.791545 ACCTTCCATGCCTAATCCCTTTA 59.208 43.478 0.00 0.00 0.00 1.85
2394 2474 4.420214 ACCTTCCATGCCTAATCCCTTTAT 59.580 41.667 0.00 0.00 0.00 1.40
2395 2475 5.615261 ACCTTCCATGCCTAATCCCTTTATA 59.385 40.000 0.00 0.00 0.00 0.98
2396 2476 6.104094 ACCTTCCATGCCTAATCCCTTTATAA 59.896 38.462 0.00 0.00 0.00 0.98
2397 2477 7.010160 CCTTCCATGCCTAATCCCTTTATAAA 58.990 38.462 0.00 0.00 0.00 1.40
2398 2478 7.675619 CCTTCCATGCCTAATCCCTTTATAAAT 59.324 37.037 0.00 0.00 0.00 1.40
2399 2479 9.753674 CTTCCATGCCTAATCCCTTTATAAATA 57.246 33.333 0.00 0.00 0.00 1.40
2421 2501 7.671495 ATATTTTTGTGCAAACTTCCATTCC 57.329 32.000 0.00 0.00 0.00 3.01
2422 2502 3.467374 TTTGTGCAAACTTCCATTCCC 57.533 42.857 0.00 0.00 0.00 3.97
2423 2503 2.380064 TGTGCAAACTTCCATTCCCT 57.620 45.000 0.00 0.00 0.00 4.20
2424 2504 2.676748 TGTGCAAACTTCCATTCCCTT 58.323 42.857 0.00 0.00 0.00 3.95
2425 2505 2.364970 TGTGCAAACTTCCATTCCCTTG 59.635 45.455 0.00 0.00 0.00 3.61
2426 2506 1.344114 TGCAAACTTCCATTCCCTTGC 59.656 47.619 0.00 0.00 39.62 4.01
2427 2507 1.338105 GCAAACTTCCATTCCCTTGCC 60.338 52.381 0.00 0.00 34.49 4.52
2428 2508 1.969923 CAAACTTCCATTCCCTTGCCA 59.030 47.619 0.00 0.00 0.00 4.92
2429 2509 2.368221 CAAACTTCCATTCCCTTGCCAA 59.632 45.455 0.00 0.00 0.00 4.52
2430 2510 1.928868 ACTTCCATTCCCTTGCCAAG 58.071 50.000 0.00 0.00 0.00 3.61
2431 2511 1.147817 ACTTCCATTCCCTTGCCAAGT 59.852 47.619 3.37 0.00 0.00 3.16
2432 2512 1.547372 CTTCCATTCCCTTGCCAAGTG 59.453 52.381 3.37 0.00 0.00 3.16
2433 2513 0.482446 TCCATTCCCTTGCCAAGTGT 59.518 50.000 3.37 0.00 0.00 3.55
2434 2514 1.133199 TCCATTCCCTTGCCAAGTGTT 60.133 47.619 3.37 0.00 0.00 3.32
2435 2515 1.693606 CCATTCCCTTGCCAAGTGTTT 59.306 47.619 3.37 0.00 0.00 2.83
2436 2516 2.896685 CCATTCCCTTGCCAAGTGTTTA 59.103 45.455 3.37 0.00 0.00 2.01
2437 2517 3.306019 CCATTCCCTTGCCAAGTGTTTAC 60.306 47.826 3.37 0.00 0.00 2.01
2438 2518 1.989706 TCCCTTGCCAAGTGTTTACC 58.010 50.000 3.37 0.00 0.00 2.85
2439 2519 1.215673 TCCCTTGCCAAGTGTTTACCA 59.784 47.619 3.37 0.00 0.00 3.25
2440 2520 2.035632 CCCTTGCCAAGTGTTTACCAA 58.964 47.619 3.37 0.00 0.00 3.67
2441 2521 2.432510 CCCTTGCCAAGTGTTTACCAAA 59.567 45.455 3.37 0.00 0.00 3.28
2442 2522 3.453424 CCTTGCCAAGTGTTTACCAAAC 58.547 45.455 3.37 0.00 41.73 2.93
2451 2531 3.006112 TGTTTACCAAACAGGCTGTCA 57.994 42.857 22.31 8.98 45.79 3.58
2454 2534 3.569194 TTACCAAACAGGCTGTCAGAA 57.431 42.857 22.31 8.32 43.14 3.02
2458 2538 2.486982 CCAAACAGGCTGTCAGAATCTG 59.513 50.000 22.31 3.38 0.00 2.90
2478 2561 2.581409 CCTACGCCGGCAAGTACG 60.581 66.667 28.98 11.60 0.00 3.67
2537 2620 3.509575 TCCCCACTTTTCGAATGGATTTG 59.490 43.478 16.23 1.56 35.33 2.32
2559 2644 5.780984 TGTCACGTTTGTTTTTACCCTTTT 58.219 33.333 0.00 0.00 0.00 2.27
2612 2780 1.091771 CGGCAACTTGAGATCGCCAT 61.092 55.000 6.39 0.00 43.13 4.40
2624 2792 0.726827 ATCGCCATGTGCTTGTTACG 59.273 50.000 4.92 0.00 38.05 3.18
2698 2871 3.786450 CCCCTTCCCTCCTAAACTGTAAT 59.214 47.826 0.00 0.00 0.00 1.89
2709 2883 7.542130 CCTCCTAAACTGTAATGCATGTTTTTC 59.458 37.037 15.51 0.00 33.65 2.29
2710 2884 8.177119 TCCTAAACTGTAATGCATGTTTTTCT 57.823 30.769 15.51 0.00 33.65 2.52
2760 2934 1.266718 GGCATGCTTGACTTTTCACGA 59.733 47.619 18.92 0.00 0.00 4.35
2761 2935 2.310577 GCATGCTTGACTTTTCACGAC 58.689 47.619 11.37 0.00 0.00 4.34
2762 2936 2.286950 GCATGCTTGACTTTTCACGACA 60.287 45.455 11.37 0.00 0.00 4.35
2766 2940 3.876914 TGCTTGACTTTTCACGACATCTT 59.123 39.130 0.00 0.00 0.00 2.40
2774 2948 6.154445 ACTTTTCACGACATCTTATACACGT 58.846 36.000 0.00 0.00 34.40 4.49
2775 2949 7.307694 ACTTTTCACGACATCTTATACACGTA 58.692 34.615 0.00 0.00 32.89 3.57
2776 2950 7.272084 ACTTTTCACGACATCTTATACACGTAC 59.728 37.037 0.00 0.00 32.89 3.67
2778 2952 6.040962 TCACGACATCTTATACACGTACTC 57.959 41.667 0.00 0.00 32.89 2.59
2779 2953 5.814188 TCACGACATCTTATACACGTACTCT 59.186 40.000 0.00 0.00 32.89 3.24
2780 2954 6.019237 TCACGACATCTTATACACGTACTCTC 60.019 42.308 0.00 0.00 32.89 3.20
2782 2956 6.538021 ACGACATCTTATACACGTACTCTCTT 59.462 38.462 0.00 0.00 32.42 2.85
2783 2957 7.065563 ACGACATCTTATACACGTACTCTCTTT 59.934 37.037 0.00 0.00 32.42 2.52
2784 2958 7.373703 CGACATCTTATACACGTACTCTCTTTG 59.626 40.741 0.00 0.00 0.00 2.77
2786 2960 8.182881 ACATCTTATACACGTACTCTCTTTGTC 58.817 37.037 0.00 0.00 0.00 3.18
2787 2961 7.081526 TCTTATACACGTACTCTCTTTGTCC 57.918 40.000 0.00 0.00 0.00 4.02
2791 2965 9.836864 TTATACACGTACTCTCTTTGTCCTATA 57.163 33.333 0.00 0.00 0.00 1.31
2792 2966 6.680874 ACACGTACTCTCTTTGTCCTATAG 57.319 41.667 0.00 0.00 0.00 1.31
2793 2967 6.179040 ACACGTACTCTCTTTGTCCTATAGT 58.821 40.000 0.00 0.00 0.00 2.12
2794 2968 6.093771 ACACGTACTCTCTTTGTCCTATAGTG 59.906 42.308 0.00 0.00 0.00 2.74
2795 2969 6.093771 CACGTACTCTCTTTGTCCTATAGTGT 59.906 42.308 0.00 0.00 0.00 3.55
2796 2970 7.279536 CACGTACTCTCTTTGTCCTATAGTGTA 59.720 40.741 0.00 0.00 0.00 2.90
2797 2971 7.826252 ACGTACTCTCTTTGTCCTATAGTGTAA 59.174 37.037 0.00 0.00 0.00 2.41
2798 2972 8.671921 CGTACTCTCTTTGTCCTATAGTGTAAA 58.328 37.037 0.00 0.00 0.00 2.01
2801 2975 9.877178 ACTCTCTTTGTCCTATAGTGTAAAATG 57.123 33.333 0.00 0.00 0.00 2.32
2826 3000 9.778741 TGATTTTTGACACTAGTCTTACATTCT 57.221 29.630 0.00 0.00 45.20 2.40
2828 3002 9.778741 ATTTTTGACACTAGTCTTACATTCTGA 57.221 29.630 0.00 0.00 45.20 3.27
2829 3003 8.818141 TTTTGACACTAGTCTTACATTCTGAG 57.182 34.615 0.00 0.00 45.20 3.35
2830 3004 7.761038 TTGACACTAGTCTTACATTCTGAGA 57.239 36.000 0.00 0.00 45.20 3.27
2831 3005 7.147143 TGACACTAGTCTTACATTCTGAGAC 57.853 40.000 0.00 0.00 45.20 3.36
2832 3006 6.128254 TGACACTAGTCTTACATTCTGAGACG 60.128 42.308 0.00 0.00 45.20 4.18
2833 3007 5.938710 ACACTAGTCTTACATTCTGAGACGA 59.061 40.000 0.00 0.00 43.43 4.20
2834 3008 6.430308 ACACTAGTCTTACATTCTGAGACGAA 59.570 38.462 0.00 0.00 43.43 3.85
2835 3009 7.040617 ACACTAGTCTTACATTCTGAGACGAAA 60.041 37.037 0.00 0.00 43.43 3.46
2836 3010 7.483375 CACTAGTCTTACATTCTGAGACGAAAG 59.517 40.741 0.00 0.00 43.43 2.62
2837 3011 6.576662 AGTCTTACATTCTGAGACGAAAGA 57.423 37.500 0.00 0.00 43.43 2.52
2838 3012 6.982852 AGTCTTACATTCTGAGACGAAAGAA 58.017 36.000 0.00 0.00 43.43 2.52
2839 3013 7.607250 AGTCTTACATTCTGAGACGAAAGAAT 58.393 34.615 0.00 0.00 43.43 2.40
2840 3014 8.740906 AGTCTTACATTCTGAGACGAAAGAATA 58.259 33.333 0.00 0.00 43.43 1.75
2841 3015 9.015577 GTCTTACATTCTGAGACGAAAGAATAG 57.984 37.037 0.00 0.00 40.36 1.73
2842 3016 8.740906 TCTTACATTCTGAGACGAAAGAATAGT 58.259 33.333 0.00 2.89 40.36 2.12
2844 3018 9.784680 TTACATTCTGAGACGAAAGAATAGTAC 57.215 33.333 0.00 0.00 40.36 2.73
2853 3027 8.997621 AGACGAAAGAATAGTACATAGCAAAA 57.002 30.769 0.00 0.00 0.00 2.44
2855 3029 7.672738 ACGAAAGAATAGTACATAGCAAAACG 58.327 34.615 0.00 0.00 0.00 3.60
2856 3030 7.330208 ACGAAAGAATAGTACATAGCAAAACGT 59.670 33.333 0.00 0.00 0.00 3.99
2901 3075 8.650143 AAATGGTACTATCAAATTTGTCCTGT 57.350 30.769 17.47 13.69 0.00 4.00
2978 3152 9.261180 TGAGTGAAAAGTATAGTGAAAGTTGAG 57.739 33.333 0.00 0.00 0.00 3.02
2988 3162 5.847670 AGTGAAAGTTGAGCGATAAAGAC 57.152 39.130 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.806487 GCACATATGACAAATGATCTAATGTGG 59.194 37.037 10.38 0.00 38.70 4.17
7 8 9.074576 ACATGCACATATGACAAATGATCTAAT 57.925 29.630 10.38 0.00 0.00 1.73
11 12 6.976349 ACAACATGCACATATGACAAATGATC 59.024 34.615 10.38 0.00 0.00 2.92
17 18 6.081872 TCAAACAACATGCACATATGACAA 57.918 33.333 10.38 0.00 0.00 3.18
71 72 9.613428 TCATTCGTAGTGAATTTTGAGGATAAT 57.387 29.630 0.00 0.00 45.06 1.28
74 75 7.824289 TCTTCATTCGTAGTGAATTTTGAGGAT 59.176 33.333 0.00 0.00 45.06 3.24
80 81 8.621286 ACAACTTCTTCATTCGTAGTGAATTTT 58.379 29.630 0.00 0.00 45.06 1.82
92 93 6.494842 TGCACAGTAAACAACTTCTTCATTC 58.505 36.000 0.00 0.00 35.76 2.67
110 111 8.914328 TTTATCAACATGACAAATATGCACAG 57.086 30.769 0.00 0.00 0.00 3.66
182 183 1.006220 GCCCACTTTTCCTTTGCGG 60.006 57.895 0.00 0.00 0.00 5.69
185 186 1.341209 GTCCTGCCCACTTTTCCTTTG 59.659 52.381 0.00 0.00 0.00 2.77
207 208 8.780249 AGTGAACAACCAACATAACATAAGTAC 58.220 33.333 0.00 0.00 0.00 2.73
211 212 6.483974 ACGAGTGAACAACCAACATAACATAA 59.516 34.615 0.00 0.00 0.00 1.90
213 214 4.819630 ACGAGTGAACAACCAACATAACAT 59.180 37.500 0.00 0.00 0.00 2.71
235 263 7.695869 ATCGTTTATTATCTCGGTCTCAAAC 57.304 36.000 0.00 0.00 0.00 2.93
273 301 9.376075 TGTTGCTCTTAAATTTGATTTGAAACA 57.624 25.926 0.00 2.37 33.82 2.83
295 323 4.705519 CCGCCCGCTGCTTTGTTG 62.706 66.667 0.00 0.00 38.05 3.33
306 334 2.961669 GCAACAAGTGTACCGCCCG 61.962 63.158 0.00 0.00 0.00 6.13
339 367 4.568152 CCGATCCGGCAATTAAATTTCT 57.432 40.909 0.00 0.00 41.17 2.52
397 425 2.112522 CTACTCTATCGTGCAACAGCG 58.887 52.381 0.00 0.00 35.74 5.18
399 427 3.111838 CTGCTACTCTATCGTGCAACAG 58.888 50.000 0.00 0.00 35.74 3.16
452 499 2.813908 CTTGTACGAGTGGCCGGC 60.814 66.667 21.18 21.18 0.00 6.13
505 552 2.422479 CTGCCTGTCACCTGATTGATTG 59.578 50.000 0.00 0.00 0.00 2.67
506 553 2.619849 CCTGCCTGTCACCTGATTGATT 60.620 50.000 0.00 0.00 0.00 2.57
507 554 1.064906 CCTGCCTGTCACCTGATTGAT 60.065 52.381 0.00 0.00 0.00 2.57
508 555 0.325933 CCTGCCTGTCACCTGATTGA 59.674 55.000 0.00 0.00 0.00 2.57
509 556 1.310933 GCCTGCCTGTCACCTGATTG 61.311 60.000 0.00 0.00 0.00 2.67
536 586 2.567049 CGGCGAGGGATCGATACC 59.433 66.667 19.90 19.90 34.64 2.73
552 602 2.746277 CGGGAAAGGAACCTGGCG 60.746 66.667 0.00 0.00 0.00 5.69
553 603 2.361230 CCGGGAAAGGAACCTGGC 60.361 66.667 0.00 0.00 45.38 4.85
555 605 0.539669 AAAGCCGGGAAAGGAACCTG 60.540 55.000 2.18 0.00 0.00 4.00
594 644 5.819901 CCAGAATTCTTACCTGAGATTGGAC 59.180 44.000 4.86 0.00 0.00 4.02
595 645 5.726308 TCCAGAATTCTTACCTGAGATTGGA 59.274 40.000 4.86 2.93 0.00 3.53
596 646 5.994250 TCCAGAATTCTTACCTGAGATTGG 58.006 41.667 4.86 0.35 0.00 3.16
602 654 3.115390 CCCCTCCAGAATTCTTACCTGA 58.885 50.000 4.86 0.00 0.00 3.86
609 661 1.341156 CCGAGCCCCTCCAGAATTCT 61.341 60.000 0.88 0.88 0.00 2.40
765 837 2.433838 CTCGCACTGCTCCCACTG 60.434 66.667 0.00 0.00 0.00 3.66
766 838 4.385405 GCTCGCACTGCTCCCACT 62.385 66.667 0.00 0.00 0.00 4.00
797 869 0.603569 GGTGAGACTCGGCTTTGAGA 59.396 55.000 7.91 0.00 39.35 3.27
815 887 1.740296 CCGGTTGGTAGTTGCGAGG 60.740 63.158 0.00 0.00 0.00 4.63
999 1071 1.829222 AGGTACTTGTACGGGTCCATG 59.171 52.381 5.04 0.00 27.25 3.66
1773 1845 2.125512 CTCGGCGGGTCCTTCTTG 60.126 66.667 7.21 0.00 0.00 3.02
2009 2081 4.457466 TGTAACAACCTCCTCTTTTGGAC 58.543 43.478 0.00 0.00 31.94 4.02
2135 2215 2.158871 TCCTCTAAACCAAACACGCTGT 60.159 45.455 0.00 0.00 0.00 4.40
2136 2216 2.489971 TCCTCTAAACCAAACACGCTG 58.510 47.619 0.00 0.00 0.00 5.18
2137 2217 2.922740 TCCTCTAAACCAAACACGCT 57.077 45.000 0.00 0.00 0.00 5.07
2138 2218 4.499037 AATTCCTCTAAACCAAACACGC 57.501 40.909 0.00 0.00 0.00 5.34
2139 2219 7.867752 TCTTTAATTCCTCTAAACCAAACACG 58.132 34.615 0.00 0.00 0.00 4.49
2140 2220 9.626045 CATCTTTAATTCCTCTAAACCAAACAC 57.374 33.333 0.00 0.00 0.00 3.32
2141 2221 8.802267 CCATCTTTAATTCCTCTAAACCAAACA 58.198 33.333 0.00 0.00 0.00 2.83
2142 2222 8.251026 CCCATCTTTAATTCCTCTAAACCAAAC 58.749 37.037 0.00 0.00 0.00 2.93
2143 2223 7.398904 CCCCATCTTTAATTCCTCTAAACCAAA 59.601 37.037 0.00 0.00 0.00 3.28
2144 2224 6.895204 CCCCATCTTTAATTCCTCTAAACCAA 59.105 38.462 0.00 0.00 0.00 3.67
2145 2225 6.218730 TCCCCATCTTTAATTCCTCTAAACCA 59.781 38.462 0.00 0.00 0.00 3.67
2146 2226 6.669631 TCCCCATCTTTAATTCCTCTAAACC 58.330 40.000 0.00 0.00 0.00 3.27
2147 2227 8.633561 CATTCCCCATCTTTAATTCCTCTAAAC 58.366 37.037 0.00 0.00 0.00 2.01
2148 2228 8.343787 ACATTCCCCATCTTTAATTCCTCTAAA 58.656 33.333 0.00 0.00 0.00 1.85
2149 2229 7.779798 CACATTCCCCATCTTTAATTCCTCTAA 59.220 37.037 0.00 0.00 0.00 2.10
2150 2230 7.128728 TCACATTCCCCATCTTTAATTCCTCTA 59.871 37.037 0.00 0.00 0.00 2.43
2151 2231 6.068853 TCACATTCCCCATCTTTAATTCCTCT 60.069 38.462 0.00 0.00 0.00 3.69
2152 2232 6.129179 TCACATTCCCCATCTTTAATTCCTC 58.871 40.000 0.00 0.00 0.00 3.71
2153 2233 6.091076 TCACATTCCCCATCTTTAATTCCT 57.909 37.500 0.00 0.00 0.00 3.36
2154 2234 5.893824 ACTCACATTCCCCATCTTTAATTCC 59.106 40.000 0.00 0.00 0.00 3.01
2155 2235 7.410120 AACTCACATTCCCCATCTTTAATTC 57.590 36.000 0.00 0.00 0.00 2.17
2156 2236 8.893563 TTAACTCACATTCCCCATCTTTAATT 57.106 30.769 0.00 0.00 0.00 1.40
2157 2237 7.561356 CCTTAACTCACATTCCCCATCTTTAAT 59.439 37.037 0.00 0.00 0.00 1.40
2158 2238 6.889722 CCTTAACTCACATTCCCCATCTTTAA 59.110 38.462 0.00 0.00 0.00 1.52
2159 2239 6.423182 CCTTAACTCACATTCCCCATCTTTA 58.577 40.000 0.00 0.00 0.00 1.85
2160 2240 5.264395 CCTTAACTCACATTCCCCATCTTT 58.736 41.667 0.00 0.00 0.00 2.52
2161 2241 4.325344 CCCTTAACTCACATTCCCCATCTT 60.325 45.833 0.00 0.00 0.00 2.40
2162 2242 3.203040 CCCTTAACTCACATTCCCCATCT 59.797 47.826 0.00 0.00 0.00 2.90
2163 2243 3.202151 TCCCTTAACTCACATTCCCCATC 59.798 47.826 0.00 0.00 0.00 3.51
2164 2244 3.197983 TCCCTTAACTCACATTCCCCAT 58.802 45.455 0.00 0.00 0.00 4.00
2165 2245 2.638325 TCCCTTAACTCACATTCCCCA 58.362 47.619 0.00 0.00 0.00 4.96
2166 2246 3.953542 ATCCCTTAACTCACATTCCCC 57.046 47.619 0.00 0.00 0.00 4.81
2167 2247 5.132144 TCCTTATCCCTTAACTCACATTCCC 59.868 44.000 0.00 0.00 0.00 3.97
2168 2248 6.099845 TCTCCTTATCCCTTAACTCACATTCC 59.900 42.308 0.00 0.00 0.00 3.01
2169 2249 7.125792 TCTCCTTATCCCTTAACTCACATTC 57.874 40.000 0.00 0.00 0.00 2.67
2170 2250 7.698163 ATCTCCTTATCCCTTAACTCACATT 57.302 36.000 0.00 0.00 0.00 2.71
2171 2251 7.698163 AATCTCCTTATCCCTTAACTCACAT 57.302 36.000 0.00 0.00 0.00 3.21
2172 2252 8.618240 TTAATCTCCTTATCCCTTAACTCACA 57.382 34.615 0.00 0.00 0.00 3.58
2173 2253 9.901172 TTTTAATCTCCTTATCCCTTAACTCAC 57.099 33.333 0.00 0.00 0.00 3.51
2179 2259 9.862149 GTGGATTTTTAATCTCCTTATCCCTTA 57.138 33.333 0.00 0.00 0.00 2.69
2180 2260 8.569596 AGTGGATTTTTAATCTCCTTATCCCTT 58.430 33.333 0.00 0.00 0.00 3.95
2181 2261 8.001292 CAGTGGATTTTTAATCTCCTTATCCCT 58.999 37.037 0.00 0.00 0.00 4.20
2182 2262 7.780271 ACAGTGGATTTTTAATCTCCTTATCCC 59.220 37.037 0.00 0.00 0.00 3.85
2183 2263 8.753497 ACAGTGGATTTTTAATCTCCTTATCC 57.247 34.615 0.00 0.00 0.00 2.59
2186 2266 9.581289 TCAAACAGTGGATTTTTAATCTCCTTA 57.419 29.630 0.00 0.00 0.00 2.69
2187 2267 8.477419 TCAAACAGTGGATTTTTAATCTCCTT 57.523 30.769 0.00 0.00 0.00 3.36
2188 2268 8.655935 ATCAAACAGTGGATTTTTAATCTCCT 57.344 30.769 0.00 0.00 0.00 3.69
2195 2275 9.581289 TCCTTCTAATCAAACAGTGGATTTTTA 57.419 29.630 6.14 0.00 35.49 1.52
2196 2276 8.477419 TCCTTCTAATCAAACAGTGGATTTTT 57.523 30.769 6.14 0.00 35.49 1.94
2197 2277 8.477419 TTCCTTCTAATCAAACAGTGGATTTT 57.523 30.769 6.14 0.00 35.49 1.82
2198 2278 8.526147 CATTCCTTCTAATCAAACAGTGGATTT 58.474 33.333 6.14 0.00 35.49 2.17
2199 2279 7.123247 CCATTCCTTCTAATCAAACAGTGGATT 59.877 37.037 0.00 6.11 37.49 3.01
2200 2280 6.604795 CCATTCCTTCTAATCAAACAGTGGAT 59.395 38.462 0.00 0.00 0.00 3.41
2201 2281 5.945784 CCATTCCTTCTAATCAAACAGTGGA 59.054 40.000 0.00 0.00 0.00 4.02
2202 2282 5.945784 TCCATTCCTTCTAATCAAACAGTGG 59.054 40.000 0.00 0.00 0.00 4.00
2203 2283 7.175641 ACTTCCATTCCTTCTAATCAAACAGTG 59.824 37.037 0.00 0.00 0.00 3.66
2204 2284 7.234355 ACTTCCATTCCTTCTAATCAAACAGT 58.766 34.615 0.00 0.00 0.00 3.55
2205 2285 7.693969 ACTTCCATTCCTTCTAATCAAACAG 57.306 36.000 0.00 0.00 0.00 3.16
2206 2286 8.477419 AAACTTCCATTCCTTCTAATCAAACA 57.523 30.769 0.00 0.00 0.00 2.83
2209 2289 9.807921 ACTTAAACTTCCATTCCTTCTAATCAA 57.192 29.630 0.00 0.00 0.00 2.57
2210 2290 9.231297 CACTTAAACTTCCATTCCTTCTAATCA 57.769 33.333 0.00 0.00 0.00 2.57
2211 2291 8.678199 CCACTTAAACTTCCATTCCTTCTAATC 58.322 37.037 0.00 0.00 0.00 1.75
2212 2292 7.615757 CCCACTTAAACTTCCATTCCTTCTAAT 59.384 37.037 0.00 0.00 0.00 1.73
2213 2293 6.946009 CCCACTTAAACTTCCATTCCTTCTAA 59.054 38.462 0.00 0.00 0.00 2.10
2214 2294 6.273730 TCCCACTTAAACTTCCATTCCTTCTA 59.726 38.462 0.00 0.00 0.00 2.10
2215 2295 5.074515 TCCCACTTAAACTTCCATTCCTTCT 59.925 40.000 0.00 0.00 0.00 2.85
2216 2296 5.321927 TCCCACTTAAACTTCCATTCCTTC 58.678 41.667 0.00 0.00 0.00 3.46
2217 2297 5.333566 TCCCACTTAAACTTCCATTCCTT 57.666 39.130 0.00 0.00 0.00 3.36
2218 2298 5.325239 CTTCCCACTTAAACTTCCATTCCT 58.675 41.667 0.00 0.00 0.00 3.36
2219 2299 4.462834 CCTTCCCACTTAAACTTCCATTCC 59.537 45.833 0.00 0.00 0.00 3.01
2220 2300 5.048013 CACCTTCCCACTTAAACTTCCATTC 60.048 44.000 0.00 0.00 0.00 2.67
2221 2301 4.832823 CACCTTCCCACTTAAACTTCCATT 59.167 41.667 0.00 0.00 0.00 3.16
2222 2302 4.105697 TCACCTTCCCACTTAAACTTCCAT 59.894 41.667 0.00 0.00 0.00 3.41
2223 2303 3.460340 TCACCTTCCCACTTAAACTTCCA 59.540 43.478 0.00 0.00 0.00 3.53
2224 2304 3.819337 GTCACCTTCCCACTTAAACTTCC 59.181 47.826 0.00 0.00 0.00 3.46
2225 2305 4.515567 CAGTCACCTTCCCACTTAAACTTC 59.484 45.833 0.00 0.00 0.00 3.01
2226 2306 4.461198 CAGTCACCTTCCCACTTAAACTT 58.539 43.478 0.00 0.00 0.00 2.66
2227 2307 3.181443 CCAGTCACCTTCCCACTTAAACT 60.181 47.826 0.00 0.00 0.00 2.66
2228 2308 3.146847 CCAGTCACCTTCCCACTTAAAC 58.853 50.000 0.00 0.00 0.00 2.01
2229 2309 3.050089 TCCAGTCACCTTCCCACTTAAA 58.950 45.455 0.00 0.00 0.00 1.52
2230 2310 2.696775 TCCAGTCACCTTCCCACTTAA 58.303 47.619 0.00 0.00 0.00 1.85
2231 2311 2.409064 TCCAGTCACCTTCCCACTTA 57.591 50.000 0.00 0.00 0.00 2.24
2232 2312 1.421646 CTTCCAGTCACCTTCCCACTT 59.578 52.381 0.00 0.00 0.00 3.16
2233 2313 1.059913 CTTCCAGTCACCTTCCCACT 58.940 55.000 0.00 0.00 0.00 4.00
2234 2314 0.765510 ACTTCCAGTCACCTTCCCAC 59.234 55.000 0.00 0.00 0.00 4.61
2235 2315 1.142870 CAACTTCCAGTCACCTTCCCA 59.857 52.381 0.00 0.00 0.00 4.37
2236 2316 1.545651 CCAACTTCCAGTCACCTTCCC 60.546 57.143 0.00 0.00 0.00 3.97
2237 2317 1.545651 CCCAACTTCCAGTCACCTTCC 60.546 57.143 0.00 0.00 0.00 3.46
2238 2318 1.420138 TCCCAACTTCCAGTCACCTTC 59.580 52.381 0.00 0.00 0.00 3.46
2239 2319 1.518367 TCCCAACTTCCAGTCACCTT 58.482 50.000 0.00 0.00 0.00 3.50
2240 2320 1.518367 TTCCCAACTTCCAGTCACCT 58.482 50.000 0.00 0.00 0.00 4.00
2241 2321 2.230660 CTTTCCCAACTTCCAGTCACC 58.769 52.381 0.00 0.00 0.00 4.02
2242 2322 1.609072 GCTTTCCCAACTTCCAGTCAC 59.391 52.381 0.00 0.00 0.00 3.67
2243 2323 1.478654 GGCTTTCCCAACTTCCAGTCA 60.479 52.381 0.00 0.00 0.00 3.41
2244 2324 1.248486 GGCTTTCCCAACTTCCAGTC 58.752 55.000 0.00 0.00 0.00 3.51
2245 2325 0.555769 TGGCTTTCCCAACTTCCAGT 59.444 50.000 0.00 0.00 41.82 4.00
2246 2326 3.437642 TGGCTTTCCCAACTTCCAG 57.562 52.632 0.00 0.00 41.82 3.86
2256 2336 0.610785 TCGGTGGGAATTGGCTTTCC 60.611 55.000 10.27 10.27 43.78 3.13
2257 2337 1.474330 ATCGGTGGGAATTGGCTTTC 58.526 50.000 0.00 0.00 0.00 2.62
2258 2338 1.937191 AATCGGTGGGAATTGGCTTT 58.063 45.000 0.00 0.00 0.00 3.51
2259 2339 1.824852 GAAATCGGTGGGAATTGGCTT 59.175 47.619 0.00 0.00 0.00 4.35
2260 2340 1.005924 AGAAATCGGTGGGAATTGGCT 59.994 47.619 0.00 0.00 0.00 4.75
2261 2341 1.474330 AGAAATCGGTGGGAATTGGC 58.526 50.000 0.00 0.00 0.00 4.52
2262 2342 3.119137 GGAAAGAAATCGGTGGGAATTGG 60.119 47.826 0.00 0.00 0.00 3.16
2263 2343 3.509575 TGGAAAGAAATCGGTGGGAATTG 59.490 43.478 0.00 0.00 0.00 2.32
2264 2344 3.763897 CTGGAAAGAAATCGGTGGGAATT 59.236 43.478 0.00 0.00 0.00 2.17
2265 2345 3.356290 CTGGAAAGAAATCGGTGGGAAT 58.644 45.455 0.00 0.00 0.00 3.01
2266 2346 2.554344 CCTGGAAAGAAATCGGTGGGAA 60.554 50.000 0.00 0.00 0.00 3.97
2267 2347 1.004277 CCTGGAAAGAAATCGGTGGGA 59.996 52.381 0.00 0.00 0.00 4.37
2268 2348 1.463674 CCTGGAAAGAAATCGGTGGG 58.536 55.000 0.00 0.00 0.00 4.61
2269 2349 1.004277 TCCCTGGAAAGAAATCGGTGG 59.996 52.381 0.00 0.00 0.00 4.61
2270 2350 2.489938 TCCCTGGAAAGAAATCGGTG 57.510 50.000 0.00 0.00 0.00 4.94
2271 2351 3.118000 GGTATCCCTGGAAAGAAATCGGT 60.118 47.826 0.00 0.00 0.00 4.69
2272 2352 3.477530 GGTATCCCTGGAAAGAAATCGG 58.522 50.000 0.00 0.00 0.00 4.18
2273 2353 3.477530 GGGTATCCCTGGAAAGAAATCG 58.522 50.000 0.00 0.00 41.34 3.34
2286 2366 4.377897 CTCACGAATTAACAGGGTATCCC 58.622 47.826 0.00 0.00 45.90 3.85
2287 2367 4.100498 TCCTCACGAATTAACAGGGTATCC 59.900 45.833 0.00 0.00 0.00 2.59
2288 2368 5.068723 TCTCCTCACGAATTAACAGGGTATC 59.931 44.000 0.00 0.00 0.00 2.24
2289 2369 4.960469 TCTCCTCACGAATTAACAGGGTAT 59.040 41.667 0.00 0.00 0.00 2.73
2290 2370 4.346730 TCTCCTCACGAATTAACAGGGTA 58.653 43.478 0.00 0.00 0.00 3.69
2291 2371 3.170717 TCTCCTCACGAATTAACAGGGT 58.829 45.455 0.00 0.00 0.00 4.34
2292 2372 3.195825 ACTCTCCTCACGAATTAACAGGG 59.804 47.826 0.00 0.00 0.00 4.45
2293 2373 4.457834 ACTCTCCTCACGAATTAACAGG 57.542 45.455 0.00 0.00 0.00 4.00
2294 2374 6.787085 AAAACTCTCCTCACGAATTAACAG 57.213 37.500 0.00 0.00 0.00 3.16
2295 2375 7.548075 GGATAAAACTCTCCTCACGAATTAACA 59.452 37.037 0.00 0.00 0.00 2.41
2296 2376 7.764901 AGGATAAAACTCTCCTCACGAATTAAC 59.235 37.037 0.00 0.00 37.30 2.01
2297 2377 7.848128 AGGATAAAACTCTCCTCACGAATTAA 58.152 34.615 0.00 0.00 37.30 1.40
2298 2378 7.419711 AGGATAAAACTCTCCTCACGAATTA 57.580 36.000 0.00 0.00 37.30 1.40
2299 2379 6.301169 AGGATAAAACTCTCCTCACGAATT 57.699 37.500 0.00 0.00 37.30 2.17
2300 2380 5.941555 AGGATAAAACTCTCCTCACGAAT 57.058 39.130 0.00 0.00 37.30 3.34
2301 2381 6.683110 GCATAGGATAAAACTCTCCTCACGAA 60.683 42.308 0.00 0.00 41.06 3.85
2302 2382 5.221263 GCATAGGATAAAACTCTCCTCACGA 60.221 44.000 0.00 0.00 41.06 4.35
2303 2383 4.985409 GCATAGGATAAAACTCTCCTCACG 59.015 45.833 0.00 0.00 41.06 4.35
2304 2384 5.163301 TGGCATAGGATAAAACTCTCCTCAC 60.163 44.000 0.00 0.00 41.06 3.51
2305 2385 4.968719 TGGCATAGGATAAAACTCTCCTCA 59.031 41.667 0.00 0.00 41.06 3.86
2306 2386 5.552870 TGGCATAGGATAAAACTCTCCTC 57.447 43.478 0.00 0.00 41.06 3.71
2307 2387 5.975988 TTGGCATAGGATAAAACTCTCCT 57.024 39.130 0.00 0.00 44.18 3.69
2308 2388 7.001073 AGAATTGGCATAGGATAAAACTCTCC 58.999 38.462 0.00 0.00 0.00 3.71
2309 2389 7.716998 TGAGAATTGGCATAGGATAAAACTCTC 59.283 37.037 0.00 0.00 0.00 3.20
2310 2390 7.577303 TGAGAATTGGCATAGGATAAAACTCT 58.423 34.615 0.00 0.00 0.00 3.24
2311 2391 7.807977 TGAGAATTGGCATAGGATAAAACTC 57.192 36.000 0.00 0.00 0.00 3.01
2312 2392 8.000709 TGATGAGAATTGGCATAGGATAAAACT 58.999 33.333 0.00 0.00 0.00 2.66
2313 2393 8.169977 TGATGAGAATTGGCATAGGATAAAAC 57.830 34.615 0.00 0.00 0.00 2.43
2314 2394 8.945195 ATGATGAGAATTGGCATAGGATAAAA 57.055 30.769 0.00 0.00 0.00 1.52
2316 2396 9.623000 CATATGATGAGAATTGGCATAGGATAA 57.377 33.333 0.00 0.00 0.00 1.75
2317 2397 7.718314 GCATATGATGAGAATTGGCATAGGATA 59.282 37.037 6.97 0.00 0.00 2.59
2318 2398 6.546403 GCATATGATGAGAATTGGCATAGGAT 59.454 38.462 6.97 0.00 0.00 3.24
2319 2399 5.884232 GCATATGATGAGAATTGGCATAGGA 59.116 40.000 6.97 0.00 0.00 2.94
2320 2400 5.067413 GGCATATGATGAGAATTGGCATAGG 59.933 44.000 6.97 0.00 0.00 2.57
2321 2401 5.650703 TGGCATATGATGAGAATTGGCATAG 59.349 40.000 6.97 0.00 35.14 2.23
2322 2402 5.572252 TGGCATATGATGAGAATTGGCATA 58.428 37.500 6.97 0.00 35.14 3.14
2323 2403 4.412843 TGGCATATGATGAGAATTGGCAT 58.587 39.130 6.97 0.00 35.14 4.40
2324 2404 3.834938 TGGCATATGATGAGAATTGGCA 58.165 40.909 6.97 0.00 37.32 4.92
2325 2405 4.859304 TTGGCATATGATGAGAATTGGC 57.141 40.909 6.97 0.00 0.00 4.52
2326 2406 6.151663 TGTTTGGCATATGATGAGAATTGG 57.848 37.500 6.97 0.00 0.00 3.16
2327 2407 7.485810 TCTTGTTTGGCATATGATGAGAATTG 58.514 34.615 6.97 0.00 0.00 2.32
2328 2408 7.649533 TCTTGTTTGGCATATGATGAGAATT 57.350 32.000 6.97 0.00 0.00 2.17
2329 2409 7.649533 TTCTTGTTTGGCATATGATGAGAAT 57.350 32.000 6.97 0.00 0.00 2.40
2330 2410 7.465353 TTTCTTGTTTGGCATATGATGAGAA 57.535 32.000 6.97 3.00 0.00 2.87
2331 2411 7.465353 TTTTCTTGTTTGGCATATGATGAGA 57.535 32.000 6.97 0.00 0.00 3.27
2332 2412 7.977293 TCATTTTCTTGTTTGGCATATGATGAG 59.023 33.333 6.97 0.00 0.00 2.90
2333 2413 7.838884 TCATTTTCTTGTTTGGCATATGATGA 58.161 30.769 6.97 0.00 0.00 2.92
2334 2414 8.481974 TTCATTTTCTTGTTTGGCATATGATG 57.518 30.769 6.97 0.00 0.00 3.07
2335 2415 9.158233 CTTTCATTTTCTTGTTTGGCATATGAT 57.842 29.630 6.97 0.00 0.00 2.45
2336 2416 8.149647 ACTTTCATTTTCTTGTTTGGCATATGA 58.850 29.630 6.97 0.00 0.00 2.15
2337 2417 8.314143 ACTTTCATTTTCTTGTTTGGCATATG 57.686 30.769 0.00 0.00 0.00 1.78
2338 2418 9.995003 TTACTTTCATTTTCTTGTTTGGCATAT 57.005 25.926 0.00 0.00 0.00 1.78
2339 2419 9.823647 TTTACTTTCATTTTCTTGTTTGGCATA 57.176 25.926 0.00 0.00 0.00 3.14
2340 2420 8.729805 TTTACTTTCATTTTCTTGTTTGGCAT 57.270 26.923 0.00 0.00 0.00 4.40
2341 2421 8.553459 TTTTACTTTCATTTTCTTGTTTGGCA 57.447 26.923 0.00 0.00 0.00 4.92
2355 2435 8.470002 GCATGGAAGGTAGATTTTTACTTTCAT 58.530 33.333 9.31 0.00 39.84 2.57
2356 2436 7.093945 GGCATGGAAGGTAGATTTTTACTTTCA 60.094 37.037 9.31 0.00 39.84 2.69
2357 2437 7.122799 AGGCATGGAAGGTAGATTTTTACTTTC 59.877 37.037 0.00 0.92 38.31 2.62
2358 2438 6.954102 AGGCATGGAAGGTAGATTTTTACTTT 59.046 34.615 0.00 0.00 0.00 2.66
2359 2439 6.494059 AGGCATGGAAGGTAGATTTTTACTT 58.506 36.000 0.00 0.00 0.00 2.24
2360 2440 6.079712 AGGCATGGAAGGTAGATTTTTACT 57.920 37.500 0.00 0.00 0.00 2.24
2361 2441 7.875327 TTAGGCATGGAAGGTAGATTTTTAC 57.125 36.000 0.00 0.00 0.00 2.01
2362 2442 7.724061 GGATTAGGCATGGAAGGTAGATTTTTA 59.276 37.037 0.00 0.00 0.00 1.52
2363 2443 6.551227 GGATTAGGCATGGAAGGTAGATTTTT 59.449 38.462 0.00 0.00 0.00 1.94
2364 2444 6.071320 GGATTAGGCATGGAAGGTAGATTTT 58.929 40.000 0.00 0.00 0.00 1.82
2365 2445 5.458215 GGGATTAGGCATGGAAGGTAGATTT 60.458 44.000 0.00 0.00 0.00 2.17
2366 2446 4.043435 GGGATTAGGCATGGAAGGTAGATT 59.957 45.833 0.00 0.00 0.00 2.40
2367 2447 3.589288 GGGATTAGGCATGGAAGGTAGAT 59.411 47.826 0.00 0.00 0.00 1.98
2368 2448 2.979678 GGGATTAGGCATGGAAGGTAGA 59.020 50.000 0.00 0.00 0.00 2.59
2369 2449 2.982488 AGGGATTAGGCATGGAAGGTAG 59.018 50.000 0.00 0.00 0.00 3.18
2370 2450 3.074857 AGGGATTAGGCATGGAAGGTA 57.925 47.619 0.00 0.00 0.00 3.08
2371 2451 1.912862 AGGGATTAGGCATGGAAGGT 58.087 50.000 0.00 0.00 0.00 3.50
2372 2452 3.319031 AAAGGGATTAGGCATGGAAGG 57.681 47.619 0.00 0.00 0.00 3.46
2373 2453 8.655935 ATTTATAAAGGGATTAGGCATGGAAG 57.344 34.615 3.94 0.00 0.00 3.46
2395 2475 8.567104 GGAATGGAAGTTTGCACAAAAATATTT 58.433 29.630 0.00 0.00 31.33 1.40
2396 2476 7.174772 GGGAATGGAAGTTTGCACAAAAATATT 59.825 33.333 0.00 0.00 31.33 1.28
2397 2477 6.654582 GGGAATGGAAGTTTGCACAAAAATAT 59.345 34.615 0.00 0.00 31.33 1.28
2398 2478 5.994668 GGGAATGGAAGTTTGCACAAAAATA 59.005 36.000 0.00 0.00 31.33 1.40
2399 2479 4.821260 GGGAATGGAAGTTTGCACAAAAAT 59.179 37.500 0.00 0.00 31.33 1.82
2400 2480 4.080638 AGGGAATGGAAGTTTGCACAAAAA 60.081 37.500 0.00 0.00 31.33 1.94
2401 2481 3.454082 AGGGAATGGAAGTTTGCACAAAA 59.546 39.130 0.00 0.00 31.33 2.44
2402 2482 3.037549 AGGGAATGGAAGTTTGCACAAA 58.962 40.909 0.00 0.00 0.00 2.83
2403 2483 2.676748 AGGGAATGGAAGTTTGCACAA 58.323 42.857 0.00 0.00 0.00 3.33
2404 2484 2.364970 CAAGGGAATGGAAGTTTGCACA 59.635 45.455 0.00 0.00 0.00 4.57
2405 2485 2.867647 GCAAGGGAATGGAAGTTTGCAC 60.868 50.000 2.47 0.00 40.30 4.57
2406 2486 1.344114 GCAAGGGAATGGAAGTTTGCA 59.656 47.619 2.47 0.00 40.30 4.08
2407 2487 1.338105 GGCAAGGGAATGGAAGTTTGC 60.338 52.381 0.00 0.00 39.96 3.68
2408 2488 1.969923 TGGCAAGGGAATGGAAGTTTG 59.030 47.619 0.00 0.00 0.00 2.93
2409 2489 2.397044 TGGCAAGGGAATGGAAGTTT 57.603 45.000 0.00 0.00 0.00 2.66
2410 2490 2.250924 CTTGGCAAGGGAATGGAAGTT 58.749 47.619 19.55 0.00 0.00 2.66
2411 2491 1.147817 ACTTGGCAAGGGAATGGAAGT 59.852 47.619 29.26 3.71 0.00 3.01
2412 2492 1.547372 CACTTGGCAAGGGAATGGAAG 59.453 52.381 29.26 3.03 32.08 3.46
2413 2493 1.133199 ACACTTGGCAAGGGAATGGAA 60.133 47.619 34.66 0.00 35.35 3.53
2414 2494 0.482446 ACACTTGGCAAGGGAATGGA 59.518 50.000 34.66 0.00 35.35 3.41
2415 2495 1.341080 AACACTTGGCAAGGGAATGG 58.659 50.000 34.66 16.00 35.35 3.16
2416 2496 3.306019 GGTAAACACTTGGCAAGGGAATG 60.306 47.826 34.66 22.60 35.35 2.67
2417 2497 2.897326 GGTAAACACTTGGCAAGGGAAT 59.103 45.455 34.66 23.23 35.35 3.01
2418 2498 2.312390 GGTAAACACTTGGCAAGGGAA 58.688 47.619 34.66 16.85 35.35 3.97
2419 2499 1.215673 TGGTAAACACTTGGCAAGGGA 59.784 47.619 34.66 11.04 35.35 4.20
2420 2500 1.698506 TGGTAAACACTTGGCAAGGG 58.301 50.000 27.28 27.28 38.11 3.95
2421 2501 3.118956 TGTTTGGTAAACACTTGGCAAGG 60.119 43.478 29.26 20.16 45.79 3.61
2422 2502 4.111916 CTGTTTGGTAAACACTTGGCAAG 58.888 43.478 25.06 25.06 45.79 4.01
2423 2503 3.118956 CCTGTTTGGTAAACACTTGGCAA 60.119 43.478 0.00 0.00 45.79 4.52
2424 2504 2.428890 CCTGTTTGGTAAACACTTGGCA 59.571 45.455 3.20 0.00 45.79 4.92
2425 2505 2.801699 GCCTGTTTGGTAAACACTTGGC 60.802 50.000 15.65 15.65 46.21 4.52
2426 2506 2.693074 AGCCTGTTTGGTAAACACTTGG 59.307 45.455 3.20 5.26 45.79 3.61
2427 2507 3.130340 ACAGCCTGTTTGGTAAACACTTG 59.870 43.478 3.20 5.25 45.79 3.16
2428 2508 3.361786 ACAGCCTGTTTGGTAAACACTT 58.638 40.909 3.20 0.00 45.79 3.16
2429 2509 2.949644 GACAGCCTGTTTGGTAAACACT 59.050 45.455 0.00 0.00 45.79 3.55
2430 2510 2.685897 TGACAGCCTGTTTGGTAAACAC 59.314 45.455 0.00 0.00 45.79 3.32
2432 2512 3.211045 TCTGACAGCCTGTTTGGTAAAC 58.789 45.455 0.00 0.00 41.73 2.01
2433 2513 3.569194 TCTGACAGCCTGTTTGGTAAA 57.431 42.857 0.00 0.00 38.35 2.01
2434 2514 3.569194 TTCTGACAGCCTGTTTGGTAA 57.431 42.857 0.00 0.00 38.35 2.85
2435 2515 3.327757 AGATTCTGACAGCCTGTTTGGTA 59.672 43.478 0.00 0.00 38.35 3.25
2436 2516 2.107204 AGATTCTGACAGCCTGTTTGGT 59.893 45.455 0.00 0.00 38.35 3.67
2437 2517 2.486982 CAGATTCTGACAGCCTGTTTGG 59.513 50.000 8.00 0.00 32.44 3.28
2438 2518 2.095364 GCAGATTCTGACAGCCTGTTTG 60.095 50.000 17.87 0.00 32.44 2.93
2439 2519 2.157738 GCAGATTCTGACAGCCTGTTT 58.842 47.619 17.87 0.00 32.44 2.83
2440 2520 1.350351 AGCAGATTCTGACAGCCTGTT 59.650 47.619 17.87 10.19 32.44 3.16
2441 2521 0.982704 AGCAGATTCTGACAGCCTGT 59.017 50.000 17.87 0.00 32.44 4.00
2442 2522 1.654317 GAGCAGATTCTGACAGCCTG 58.346 55.000 17.87 12.20 32.44 4.85
2443 2523 0.540923 GGAGCAGATTCTGACAGCCT 59.459 55.000 17.87 4.25 32.44 4.58
2444 2524 0.540923 AGGAGCAGATTCTGACAGCC 59.459 55.000 17.87 11.15 32.44 4.85
2445 2525 2.797792 CGTAGGAGCAGATTCTGACAGC 60.798 54.545 17.87 1.68 32.44 4.40
2446 2526 2.797792 GCGTAGGAGCAGATTCTGACAG 60.798 54.545 17.87 0.00 37.05 3.51
2447 2527 1.135139 GCGTAGGAGCAGATTCTGACA 59.865 52.381 17.87 0.00 37.05 3.58
2448 2528 1.537135 GGCGTAGGAGCAGATTCTGAC 60.537 57.143 17.87 9.79 39.27 3.51
2449 2529 0.747255 GGCGTAGGAGCAGATTCTGA 59.253 55.000 17.87 0.00 39.27 3.27
2450 2530 0.596083 CGGCGTAGGAGCAGATTCTG 60.596 60.000 9.40 9.40 39.27 3.02
2451 2531 1.736586 CGGCGTAGGAGCAGATTCT 59.263 57.895 0.00 0.00 39.27 2.40
2454 2534 3.917760 GCCGGCGTAGGAGCAGAT 61.918 66.667 12.58 0.00 39.27 2.90
2458 2538 3.072486 TACTTGCCGGCGTAGGAGC 62.072 63.158 26.28 1.48 0.00 4.70
2478 2561 4.124238 AGTAGCTCGACACTCTACTGATC 58.876 47.826 0.00 0.00 40.84 2.92
2537 2620 6.709145 AAAAAGGGTAAAAACAAACGTGAC 57.291 33.333 0.00 0.00 0.00 3.67
2567 2652 7.701924 GCCGGTAGGTGGTAAAAATTAATAAAC 59.298 37.037 1.90 0.00 40.50 2.01
2612 2780 4.377021 ACTTTCTGATCGTAACAAGCACA 58.623 39.130 0.00 0.00 0.00 4.57
2624 2792 5.924475 TTTTCTCCACGAACTTTCTGATC 57.076 39.130 0.00 0.00 0.00 2.92
2652 2821 4.082625 TGCAGTAGCCATGAAAACAAGATG 60.083 41.667 0.00 0.00 41.13 2.90
2755 2929 5.814188 AGAGTACGTGTATAAGATGTCGTGA 59.186 40.000 0.00 0.00 33.70 4.35
2760 2934 8.053026 ACAAAGAGAGTACGTGTATAAGATGT 57.947 34.615 0.00 0.00 0.00 3.06
2761 2935 7.644551 GGACAAAGAGAGTACGTGTATAAGATG 59.355 40.741 0.00 0.00 0.00 2.90
2762 2936 7.556996 AGGACAAAGAGAGTACGTGTATAAGAT 59.443 37.037 0.00 0.00 0.00 2.40
2766 2940 9.486497 CTATAGGACAAAGAGAGTACGTGTATA 57.514 37.037 0.00 0.00 0.00 1.47
2775 2949 9.877178 CATTTTACACTATAGGACAAAGAGAGT 57.123 33.333 4.43 0.00 0.00 3.24
2800 2974 9.778741 AGAATGTAAGACTAGTGTCAAAAATCA 57.221 29.630 0.00 0.00 45.20 2.57
2802 2976 9.778741 TCAGAATGTAAGACTAGTGTCAAAAAT 57.221 29.630 0.00 0.00 40.79 1.82
2803 2977 9.261180 CTCAGAATGTAAGACTAGTGTCAAAAA 57.739 33.333 0.00 0.00 40.79 1.94
2804 2978 8.638873 TCTCAGAATGTAAGACTAGTGTCAAAA 58.361 33.333 0.00 0.00 40.79 2.44
2805 2979 8.082852 GTCTCAGAATGTAAGACTAGTGTCAAA 58.917 37.037 0.00 0.00 40.79 2.69
2806 2980 7.573283 CGTCTCAGAATGTAAGACTAGTGTCAA 60.573 40.741 0.00 0.00 40.79 3.18
2807 2981 6.128254 CGTCTCAGAATGTAAGACTAGTGTCA 60.128 42.308 0.00 0.00 40.79 3.58
2808 2982 6.092396 TCGTCTCAGAATGTAAGACTAGTGTC 59.908 42.308 0.00 0.00 39.50 3.67
2809 2983 5.938710 TCGTCTCAGAATGTAAGACTAGTGT 59.061 40.000 0.00 0.00 37.40 3.55
2810 2984 6.424176 TCGTCTCAGAATGTAAGACTAGTG 57.576 41.667 0.00 0.00 37.40 2.74
2811 2985 7.390996 TCTTTCGTCTCAGAATGTAAGACTAGT 59.609 37.037 0.00 0.00 37.40 2.57
2812 2986 7.753659 TCTTTCGTCTCAGAATGTAAGACTAG 58.246 38.462 0.00 0.00 37.40 2.57
2813 2987 7.683437 TCTTTCGTCTCAGAATGTAAGACTA 57.317 36.000 0.00 0.00 37.40 2.59
2814 2988 6.576662 TCTTTCGTCTCAGAATGTAAGACT 57.423 37.500 0.00 0.00 37.40 3.24
2815 2989 7.820044 ATTCTTTCGTCTCAGAATGTAAGAC 57.180 36.000 0.00 0.00 38.16 3.01
2816 2990 8.740906 ACTATTCTTTCGTCTCAGAATGTAAGA 58.259 33.333 4.93 0.00 39.58 2.10
2817 2991 8.918961 ACTATTCTTTCGTCTCAGAATGTAAG 57.081 34.615 4.93 0.00 39.58 2.34
2818 2992 9.784680 GTACTATTCTTTCGTCTCAGAATGTAA 57.215 33.333 4.93 0.00 39.58 2.41
2819 2993 8.953313 TGTACTATTCTTTCGTCTCAGAATGTA 58.047 33.333 4.93 3.60 39.58 2.29
2820 2994 7.827701 TGTACTATTCTTTCGTCTCAGAATGT 58.172 34.615 4.93 4.34 39.58 2.71
2821 2995 8.864069 ATGTACTATTCTTTCGTCTCAGAATG 57.136 34.615 4.93 0.00 39.58 2.67
2823 2997 8.129840 GCTATGTACTATTCTTTCGTCTCAGAA 58.870 37.037 0.00 0.00 33.55 3.02
2824 2998 7.282450 TGCTATGTACTATTCTTTCGTCTCAGA 59.718 37.037 0.00 0.00 0.00 3.27
2825 2999 7.418408 TGCTATGTACTATTCTTTCGTCTCAG 58.582 38.462 0.00 0.00 0.00 3.35
2826 3000 7.329588 TGCTATGTACTATTCTTTCGTCTCA 57.670 36.000 0.00 0.00 0.00 3.27
2827 3001 8.630278 TTTGCTATGTACTATTCTTTCGTCTC 57.370 34.615 0.00 0.00 0.00 3.36
2828 3002 8.870879 GTTTTGCTATGTACTATTCTTTCGTCT 58.129 33.333 0.00 0.00 0.00 4.18
2829 3003 7.839837 CGTTTTGCTATGTACTATTCTTTCGTC 59.160 37.037 0.00 0.00 0.00 4.20
2830 3004 7.330208 ACGTTTTGCTATGTACTATTCTTTCGT 59.670 33.333 0.00 0.00 0.00 3.85
2831 3005 7.672738 ACGTTTTGCTATGTACTATTCTTTCG 58.327 34.615 0.00 0.00 0.00 3.46
2962 3136 8.533153 GTCTTTATCGCTCAACTTTCACTATAC 58.467 37.037 0.00 0.00 0.00 1.47
2969 3143 5.607119 TTGGTCTTTATCGCTCAACTTTC 57.393 39.130 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.