Multiple sequence alignment - TraesCS4A01G081400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G081400 chr4A 100.000 4001 0 0 1 4001 84532226 84536226 0.000000e+00 7389.0
1 TraesCS4A01G081400 chr4A 90.278 144 13 1 1 144 742425560 742425418 1.900000e-43 187.0
2 TraesCS4A01G081400 chr4A 100.000 42 0 0 3960 4001 684028130 684028171 1.190000e-10 78.7
3 TraesCS4A01G081400 chr4A 100.000 42 0 0 3960 4001 684054587 684054628 1.190000e-10 78.7
4 TraesCS4A01G081400 chr4A 100.000 42 0 0 3960 4001 713101272 713101313 1.190000e-10 78.7
5 TraesCS4A01G081400 chr4A 93.878 49 3 0 3953 4001 161279399 161279447 1.540000e-09 75.0
6 TraesCS4A01G081400 chr4D 95.371 2981 91 26 727 3675 379913470 379910505 0.000000e+00 4697.0
7 TraesCS4A01G081400 chr4D 84.277 318 12 19 156 457 379913760 379913465 3.940000e-70 276.0
8 TraesCS4A01G081400 chr4D 90.909 143 12 1 1 143 488451348 488451489 1.470000e-44 191.0
9 TraesCS4A01G081400 chr4D 85.106 94 9 5 3872 3963 379910268 379910178 1.530000e-14 91.6
10 TraesCS4A01G081400 chr4D 100.000 37 0 0 3689 3725 379910465 379910429 7.170000e-08 69.4
11 TraesCS4A01G081400 chr4B 95.316 2626 85 22 727 3325 466970075 466967461 0.000000e+00 4133.0
12 TraesCS4A01G081400 chr4B 87.622 307 17 8 3369 3675 466967447 466967162 1.780000e-88 337.0
13 TraesCS4A01G081400 chr4B 85.859 297 22 10 155 449 466970353 466970075 8.410000e-77 298.0
14 TraesCS4A01G081400 chr4B 90.909 143 12 1 1 143 138301256 138301115 1.470000e-44 191.0
15 TraesCS4A01G081400 chr4B 100.000 37 0 0 3689 3725 466967122 466967086 7.170000e-08 69.4
16 TraesCS4A01G081400 chr1B 91.356 671 33 17 949 1610 654525528 654526182 0.000000e+00 894.0
17 TraesCS4A01G081400 chrUn 100.000 393 0 0 2488 2880 479655863 479656255 0.000000e+00 726.0
18 TraesCS4A01G081400 chrUn 97.810 274 6 0 457 730 83678628 83678901 1.300000e-129 473.0
19 TraesCS4A01G081400 chrUn 96.347 219 8 0 1392 1610 473128143 473127925 1.060000e-95 361.0
20 TraesCS4A01G081400 chrUn 94.977 219 11 0 1392 1610 475075763 475075545 1.060000e-90 344.0
21 TraesCS4A01G081400 chrUn 87.719 228 19 7 1127 1345 473128369 473128142 1.430000e-64 257.0
22 TraesCS4A01G081400 chrUn 87.719 228 19 7 1127 1345 475075989 475075762 1.430000e-64 257.0
23 TraesCS4A01G081400 chr2B 95.116 389 15 3 1222 1610 111369484 111369868 9.510000e-171 610.0
24 TraesCS4A01G081400 chr1A 99.281 278 2 0 455 732 554825138 554825415 1.660000e-138 503.0
25 TraesCS4A01G081400 chr1A 95.745 47 1 1 3955 4001 512648139 512648094 1.540000e-09 75.0
26 TraesCS4A01G081400 chr3A 99.635 274 1 0 457 730 165289250 165289523 5.970000e-138 501.0
27 TraesCS4A01G081400 chr3A 89.542 153 14 2 1 152 358593063 358592912 4.080000e-45 193.0
28 TraesCS4A01G081400 chr3A 87.821 156 16 3 1 156 141010305 141010457 3.180000e-41 180.0
29 TraesCS4A01G081400 chr3A 100.000 42 0 0 3960 4001 199138967 199138926 1.190000e-10 78.7
30 TraesCS4A01G081400 chr7B 98.556 277 4 0 457 733 629565263 629564987 1.290000e-134 490.0
31 TraesCS4A01G081400 chr7B 98.195 277 5 0 457 733 677423224 677422948 6.010000e-133 484.0
32 TraesCS4A01G081400 chr7B 81.735 219 15 15 1263 1458 693000316 693000532 4.140000e-35 159.0
33 TraesCS4A01G081400 chr6B 98.905 274 3 0 457 730 662616423 662616150 1.290000e-134 490.0
34 TraesCS4A01G081400 chr6A 98.905 274 3 0 457 730 586916500 586916227 1.290000e-134 490.0
35 TraesCS4A01G081400 chr5B 98.195 277 5 0 454 730 477882404 477882680 6.010000e-133 484.0
36 TraesCS4A01G081400 chr5A 98.540 274 4 0 457 730 663369162 663369435 6.010000e-133 484.0
37 TraesCS4A01G081400 chr5A 91.429 140 11 1 4 143 427200957 427200819 1.470000e-44 191.0
38 TraesCS4A01G081400 chr5A 90.909 143 12 1 1 143 505225460 505225601 1.470000e-44 191.0
39 TraesCS4A01G081400 chr5A 100.000 42 0 0 3960 4001 105421367 105421408 1.190000e-10 78.7
40 TraesCS4A01G081400 chr5A 100.000 40 0 0 3962 4001 343130266 343130227 1.540000e-09 75.0
41 TraesCS4A01G081400 chr2A 89.542 153 14 2 1 152 652668631 652668782 4.080000e-45 193.0
42 TraesCS4A01G081400 chr3D 90.278 144 13 1 1 144 169360511 169360369 1.900000e-43 187.0
43 TraesCS4A01G081400 chr7D 82.110 218 16 9 1263 1458 606825964 606825748 8.900000e-37 165.0
44 TraesCS4A01G081400 chr7A 80.734 218 19 8 1263 1458 699414581 699414797 8.960000e-32 148.0
45 TraesCS4A01G081400 chr7A 100.000 40 0 0 3962 4001 649492082 649492043 1.540000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G081400 chr4A 84532226 84536226 4000 False 7389.00 7389 100.00000 1 4001 1 chr4A.!!$F1 4000
1 TraesCS4A01G081400 chr4D 379910178 379913760 3582 True 1283.50 4697 91.18850 156 3963 4 chr4D.!!$R1 3807
2 TraesCS4A01G081400 chr4B 466967086 466970353 3267 True 1209.35 4133 92.19925 155 3725 4 chr4B.!!$R2 3570
3 TraesCS4A01G081400 chr1B 654525528 654526182 654 False 894.00 894 91.35600 949 1610 1 chr1B.!!$F1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 211 0.107703 TTGCCTTGCTATCGTGAGGG 60.108 55.0 0.00 0.0 0.00 4.30 F
454 471 0.182061 AAGACGCATGCATCATCCCT 59.818 50.0 17.10 0.0 0.00 4.20 F
455 472 0.250209 AGACGCATGCATCATCCCTC 60.250 55.0 17.10 0.0 0.00 4.30 F
464 481 0.477204 CATCATCCCTCAGGGCATGT 59.523 55.0 4.08 0.0 43.94 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2243 0.463654 TGCTCCGGAAATCCAATCGG 60.464 55.000 5.23 0.0 43.42 4.18 R
2486 2543 2.241160 TGCTACTCCTTACACCGTCAA 58.759 47.619 0.00 0.0 0.00 3.18 R
2880 2937 1.004440 AAGCACCTCCTCGCTTGAC 60.004 57.895 0.00 0.0 46.41 3.18 R
3002 3059 6.952773 TGCATCTAACCAACAAACTAAACT 57.047 33.333 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.893124 ATATCATTTGAAGCTCCTTTCACAT 57.107 32.000 0.00 0.00 36.84 3.21
26 27 8.985315 ATATCATTTGAAGCTCCTTTCACATA 57.015 30.769 0.00 0.00 36.84 2.29
27 28 6.500684 TCATTTGAAGCTCCTTTCACATAC 57.499 37.500 0.00 0.00 36.84 2.39
28 29 5.122239 TCATTTGAAGCTCCTTTCACATACG 59.878 40.000 0.00 0.00 36.84 3.06
29 30 3.953712 TGAAGCTCCTTTCACATACGA 57.046 42.857 0.00 0.00 32.39 3.43
30 31 4.265904 TGAAGCTCCTTTCACATACGAA 57.734 40.909 0.00 0.00 32.39 3.85
31 32 4.832248 TGAAGCTCCTTTCACATACGAAT 58.168 39.130 0.00 0.00 32.39 3.34
32 33 5.245531 TGAAGCTCCTTTCACATACGAATT 58.754 37.500 0.00 0.00 32.39 2.17
33 34 5.705441 TGAAGCTCCTTTCACATACGAATTT 59.295 36.000 0.00 0.00 32.39 1.82
34 35 5.551760 AGCTCCTTTCACATACGAATTTG 57.448 39.130 0.00 0.00 0.00 2.32
35 36 5.245531 AGCTCCTTTCACATACGAATTTGA 58.754 37.500 0.00 0.00 0.00 2.69
36 37 5.122396 AGCTCCTTTCACATACGAATTTGAC 59.878 40.000 0.00 0.00 0.00 3.18
37 38 5.524511 TCCTTTCACATACGAATTTGACG 57.475 39.130 0.00 0.00 0.00 4.35
38 39 4.390603 TCCTTTCACATACGAATTTGACGG 59.609 41.667 0.00 0.00 34.93 4.79
39 40 4.153475 CCTTTCACATACGAATTTGACGGT 59.847 41.667 0.00 0.00 34.93 4.83
40 41 5.349270 CCTTTCACATACGAATTTGACGGTA 59.651 40.000 0.00 0.00 34.93 4.02
41 42 6.036735 CCTTTCACATACGAATTTGACGGTAT 59.963 38.462 0.00 0.00 34.93 2.73
42 43 5.959652 TCACATACGAATTTGACGGTATG 57.040 39.130 0.00 8.12 34.47 2.39
43 44 4.269123 TCACATACGAATTTGACGGTATGC 59.731 41.667 0.00 0.00 33.15 3.14
44 45 4.270084 CACATACGAATTTGACGGTATGCT 59.730 41.667 0.00 0.00 33.15 3.79
45 46 4.873827 ACATACGAATTTGACGGTATGCTT 59.126 37.500 0.00 0.00 33.15 3.91
46 47 5.353123 ACATACGAATTTGACGGTATGCTTT 59.647 36.000 0.00 0.00 33.15 3.51
47 48 4.078363 ACGAATTTGACGGTATGCTTTG 57.922 40.909 0.00 0.00 34.93 2.77
48 49 3.500680 ACGAATTTGACGGTATGCTTTGT 59.499 39.130 0.00 0.00 34.93 2.83
49 50 3.845775 CGAATTTGACGGTATGCTTTGTG 59.154 43.478 0.00 0.00 0.00 3.33
50 51 4.612712 CGAATTTGACGGTATGCTTTGTGT 60.613 41.667 0.00 0.00 0.00 3.72
51 52 5.390040 CGAATTTGACGGTATGCTTTGTGTA 60.390 40.000 0.00 0.00 0.00 2.90
52 53 5.950758 ATTTGACGGTATGCTTTGTGTAA 57.049 34.783 0.00 0.00 0.00 2.41
53 54 5.351233 TTTGACGGTATGCTTTGTGTAAG 57.649 39.130 0.00 0.00 36.90 2.34
54 55 3.997762 TGACGGTATGCTTTGTGTAAGT 58.002 40.909 0.00 0.00 36.19 2.24
55 56 4.382291 TGACGGTATGCTTTGTGTAAGTT 58.618 39.130 0.00 0.00 36.19 2.66
56 57 4.212425 TGACGGTATGCTTTGTGTAAGTTG 59.788 41.667 0.00 0.00 36.19 3.16
57 58 3.058501 ACGGTATGCTTTGTGTAAGTTGC 60.059 43.478 0.00 0.00 36.19 4.17
58 59 3.058570 CGGTATGCTTTGTGTAAGTTGCA 60.059 43.478 0.00 0.00 36.19 4.08
59 60 4.379394 CGGTATGCTTTGTGTAAGTTGCAT 60.379 41.667 0.00 0.00 42.64 3.96
60 61 4.858692 GGTATGCTTTGTGTAAGTTGCATG 59.141 41.667 8.29 0.00 40.65 4.06
61 62 4.589216 ATGCTTTGTGTAAGTTGCATGT 57.411 36.364 0.00 0.00 39.30 3.21
62 63 3.963665 TGCTTTGTGTAAGTTGCATGTC 58.036 40.909 0.00 0.00 36.19 3.06
63 64 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
64 65 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
65 66 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
66 67 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
67 68 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
68 69 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
104 105 9.757227 AACATTTGGTCAAAATTAATCTCGAAA 57.243 25.926 0.00 0.00 36.28 3.46
105 106 9.757227 ACATTTGGTCAAAATTAATCTCGAAAA 57.243 25.926 0.00 0.00 36.28 2.29
108 109 7.845617 TGGTCAAAATTAATCTCGAAAAACG 57.154 32.000 0.00 0.00 44.09 3.60
109 110 6.361214 TGGTCAAAATTAATCTCGAAAAACGC 59.639 34.615 0.00 0.00 42.26 4.84
110 111 6.361214 GGTCAAAATTAATCTCGAAAAACGCA 59.639 34.615 0.00 0.00 42.26 5.24
111 112 7.061789 GGTCAAAATTAATCTCGAAAAACGCAT 59.938 33.333 0.00 0.00 42.26 4.73
112 113 8.424731 GTCAAAATTAATCTCGAAAAACGCATT 58.575 29.630 0.00 0.00 42.26 3.56
113 114 9.613957 TCAAAATTAATCTCGAAAAACGCATTA 57.386 25.926 0.00 0.00 42.26 1.90
116 117 7.665080 ATTAATCTCGAAAAACGCATTAAGC 57.335 32.000 0.00 0.00 38.51 3.09
117 118 4.946784 ATCTCGAAAAACGCATTAAGCT 57.053 36.364 0.00 0.00 42.61 3.74
118 119 4.322101 TCTCGAAAAACGCATTAAGCTC 57.678 40.909 0.00 0.00 42.61 4.09
119 120 3.994392 TCTCGAAAAACGCATTAAGCTCT 59.006 39.130 0.00 0.00 42.61 4.09
120 121 5.165676 TCTCGAAAAACGCATTAAGCTCTA 58.834 37.500 0.00 0.00 42.61 2.43
121 122 5.810587 TCTCGAAAAACGCATTAAGCTCTAT 59.189 36.000 0.00 0.00 42.61 1.98
122 123 6.976349 TCTCGAAAAACGCATTAAGCTCTATA 59.024 34.615 0.00 0.00 42.61 1.31
123 124 7.652105 TCTCGAAAAACGCATTAAGCTCTATAT 59.348 33.333 0.00 0.00 42.61 0.86
124 125 8.806177 TCGAAAAACGCATTAAGCTCTATATA 57.194 30.769 0.00 0.00 42.61 0.86
125 126 8.912658 TCGAAAAACGCATTAAGCTCTATATAG 58.087 33.333 3.10 3.10 42.61 1.31
126 127 8.912658 CGAAAAACGCATTAAGCTCTATATAGA 58.087 33.333 11.94 11.94 42.61 1.98
139 140 8.671987 AGCTCTATATAGATAAAAAGGAGGCA 57.328 34.615 12.86 0.00 0.00 4.75
140 141 8.757877 AGCTCTATATAGATAAAAAGGAGGCAG 58.242 37.037 12.86 0.00 0.00 4.85
141 142 8.536175 GCTCTATATAGATAAAAAGGAGGCAGT 58.464 37.037 12.86 0.00 0.00 4.40
178 179 2.311450 GCGAAGAACTTTCGGTTTCC 57.689 50.000 10.77 0.00 41.76 3.13
197 198 2.158971 TCCTTCAACCTTTTTGCCTTGC 60.159 45.455 0.00 0.00 0.00 4.01
208 211 0.107703 TTGCCTTGCTATCGTGAGGG 60.108 55.000 0.00 0.00 0.00 4.30
225 228 5.065218 CGTGAGGGGAAGAAATGTCATTAAG 59.935 44.000 0.00 0.00 0.00 1.85
228 231 5.196695 AGGGGAAGAAATGTCATTAAGAGC 58.803 41.667 0.00 0.00 0.00 4.09
229 232 4.949856 GGGGAAGAAATGTCATTAAGAGCA 59.050 41.667 0.00 0.00 0.00 4.26
230 233 5.067023 GGGGAAGAAATGTCATTAAGAGCAG 59.933 44.000 0.00 0.00 0.00 4.24
231 234 5.882557 GGGAAGAAATGTCATTAAGAGCAGA 59.117 40.000 0.00 0.00 0.00 4.26
233 236 6.372659 GGAAGAAATGTCATTAAGAGCAGACA 59.627 38.462 0.00 0.00 44.16 3.41
234 237 6.981762 AGAAATGTCATTAAGAGCAGACAG 57.018 37.500 0.00 0.00 43.39 3.51
235 238 6.705302 AGAAATGTCATTAAGAGCAGACAGA 58.295 36.000 0.00 0.00 43.39 3.41
236 239 7.337167 AGAAATGTCATTAAGAGCAGACAGAT 58.663 34.615 0.00 0.00 43.39 2.90
237 240 7.495279 AGAAATGTCATTAAGAGCAGACAGATC 59.505 37.037 0.00 0.00 43.39 2.75
298 315 3.190337 CCGAGACGGTTTCTTTCGT 57.810 52.632 1.80 0.00 42.73 3.85
299 316 1.494824 CCGAGACGGTTTCTTTCGTT 58.505 50.000 1.80 0.00 42.73 3.85
300 317 1.454653 CCGAGACGGTTTCTTTCGTTC 59.545 52.381 1.80 0.00 42.73 3.95
355 372 3.737172 ACCGCAGCAAATCGTGGC 61.737 61.111 0.00 0.00 36.18 5.01
446 463 1.809619 GCCTACGAAGACGCATGCA 60.810 57.895 19.57 0.00 43.96 3.96
448 465 0.855349 CCTACGAAGACGCATGCATC 59.145 55.000 19.57 12.96 43.96 3.91
449 466 1.559831 CTACGAAGACGCATGCATCA 58.440 50.000 17.10 0.00 43.96 3.07
450 467 2.130395 CTACGAAGACGCATGCATCAT 58.870 47.619 17.10 3.29 43.96 2.45
451 468 0.933097 ACGAAGACGCATGCATCATC 59.067 50.000 17.10 12.77 43.96 2.92
452 469 0.234106 CGAAGACGCATGCATCATCC 59.766 55.000 17.10 3.42 0.00 3.51
453 470 0.590195 GAAGACGCATGCATCATCCC 59.410 55.000 17.10 0.00 0.00 3.85
454 471 0.182061 AAGACGCATGCATCATCCCT 59.818 50.000 17.10 0.00 0.00 4.20
455 472 0.250209 AGACGCATGCATCATCCCTC 60.250 55.000 17.10 0.00 0.00 4.30
456 473 0.533531 GACGCATGCATCATCCCTCA 60.534 55.000 19.57 0.00 0.00 3.86
457 474 0.534427 ACGCATGCATCATCCCTCAG 60.534 55.000 19.57 0.00 0.00 3.35
458 475 1.235281 CGCATGCATCATCCCTCAGG 61.235 60.000 19.57 0.00 0.00 3.86
459 476 0.894184 GCATGCATCATCCCTCAGGG 60.894 60.000 14.21 1.80 46.11 4.45
460 477 0.894184 CATGCATCATCCCTCAGGGC 60.894 60.000 4.08 0.00 43.94 5.19
461 478 1.358051 ATGCATCATCCCTCAGGGCA 61.358 55.000 4.08 0.00 43.94 5.36
462 479 1.358051 TGCATCATCCCTCAGGGCAT 61.358 55.000 4.08 0.00 43.94 4.40
463 480 0.894184 GCATCATCCCTCAGGGCATG 60.894 60.000 4.08 10.29 43.94 4.06
464 481 0.477204 CATCATCCCTCAGGGCATGT 59.523 55.000 4.08 0.00 43.94 3.21
465 482 1.701292 CATCATCCCTCAGGGCATGTA 59.299 52.381 4.08 1.46 43.94 2.29
466 483 1.131638 TCATCCCTCAGGGCATGTAC 58.868 55.000 4.08 0.00 43.94 2.90
467 484 0.839277 CATCCCTCAGGGCATGTACA 59.161 55.000 4.08 0.00 43.94 2.90
468 485 1.212688 CATCCCTCAGGGCATGTACAA 59.787 52.381 4.08 0.00 43.94 2.41
469 486 1.595311 TCCCTCAGGGCATGTACAAT 58.405 50.000 4.08 0.00 43.94 2.71
470 487 1.212688 TCCCTCAGGGCATGTACAATG 59.787 52.381 4.08 0.12 43.94 2.82
471 488 1.683943 CCTCAGGGCATGTACAATGG 58.316 55.000 0.00 0.00 0.00 3.16
472 489 1.064463 CCTCAGGGCATGTACAATGGT 60.064 52.381 0.00 0.00 0.00 3.55
473 490 2.621407 CCTCAGGGCATGTACAATGGTT 60.621 50.000 0.00 0.00 0.00 3.67
474 491 2.684881 CTCAGGGCATGTACAATGGTTC 59.315 50.000 0.00 0.00 0.00 3.62
475 492 2.308570 TCAGGGCATGTACAATGGTTCT 59.691 45.455 0.00 0.00 0.00 3.01
476 493 3.521531 TCAGGGCATGTACAATGGTTCTA 59.478 43.478 0.00 0.00 0.00 2.10
477 494 4.165950 TCAGGGCATGTACAATGGTTCTAT 59.834 41.667 0.00 0.00 0.00 1.98
478 495 4.516698 CAGGGCATGTACAATGGTTCTATC 59.483 45.833 0.00 0.00 0.00 2.08
479 496 4.413520 AGGGCATGTACAATGGTTCTATCT 59.586 41.667 0.00 0.00 0.00 1.98
480 497 5.103940 AGGGCATGTACAATGGTTCTATCTT 60.104 40.000 0.00 0.00 0.00 2.40
481 498 6.101150 AGGGCATGTACAATGGTTCTATCTTA 59.899 38.462 0.00 0.00 0.00 2.10
482 499 6.428159 GGGCATGTACAATGGTTCTATCTTAG 59.572 42.308 0.00 0.00 0.00 2.18
483 500 6.073003 GGCATGTACAATGGTTCTATCTTAGC 60.073 42.308 0.00 0.00 0.00 3.09
484 501 6.483307 GCATGTACAATGGTTCTATCTTAGCA 59.517 38.462 0.00 0.00 0.00 3.49
485 502 7.012327 GCATGTACAATGGTTCTATCTTAGCAA 59.988 37.037 0.00 0.00 0.00 3.91
486 503 9.060347 CATGTACAATGGTTCTATCTTAGCAAT 57.940 33.333 0.00 0.00 0.00 3.56
487 504 8.437360 TGTACAATGGTTCTATCTTAGCAATG 57.563 34.615 0.00 0.00 0.00 2.82
488 505 6.382869 ACAATGGTTCTATCTTAGCAATGC 57.617 37.500 0.00 0.00 0.00 3.56
489 506 5.300286 ACAATGGTTCTATCTTAGCAATGCC 59.700 40.000 0.00 0.00 0.00 4.40
490 507 4.502105 TGGTTCTATCTTAGCAATGCCA 57.498 40.909 0.00 0.00 0.00 4.92
491 508 4.199310 TGGTTCTATCTTAGCAATGCCAC 58.801 43.478 0.00 0.00 0.00 5.01
492 509 3.248602 GGTTCTATCTTAGCAATGCCACG 59.751 47.826 0.00 0.00 0.00 4.94
493 510 3.819564 TCTATCTTAGCAATGCCACGT 57.180 42.857 0.00 0.00 0.00 4.49
494 511 4.929819 TCTATCTTAGCAATGCCACGTA 57.070 40.909 0.00 0.00 0.00 3.57
495 512 4.871513 TCTATCTTAGCAATGCCACGTAG 58.128 43.478 0.00 0.00 0.00 3.51
496 513 2.309528 TCTTAGCAATGCCACGTAGG 57.690 50.000 0.00 0.00 41.84 3.18
497 514 1.828595 TCTTAGCAATGCCACGTAGGA 59.171 47.619 0.00 0.00 41.22 2.94
498 515 2.434336 TCTTAGCAATGCCACGTAGGAT 59.566 45.455 0.00 0.00 41.22 3.24
499 516 3.639561 TCTTAGCAATGCCACGTAGGATA 59.360 43.478 0.00 0.00 41.22 2.59
500 517 2.533266 AGCAATGCCACGTAGGATAG 57.467 50.000 0.00 0.00 41.22 2.08
501 518 2.039418 AGCAATGCCACGTAGGATAGA 58.961 47.619 0.00 0.00 41.22 1.98
502 519 2.634940 AGCAATGCCACGTAGGATAGAT 59.365 45.455 0.00 0.00 41.22 1.98
503 520 2.738846 GCAATGCCACGTAGGATAGATG 59.261 50.000 8.04 0.00 41.22 2.90
504 521 3.554960 GCAATGCCACGTAGGATAGATGA 60.555 47.826 8.04 0.00 41.22 2.92
505 522 4.825422 CAATGCCACGTAGGATAGATGAT 58.175 43.478 8.04 0.00 41.22 2.45
506 523 3.942130 TGCCACGTAGGATAGATGATG 57.058 47.619 8.04 0.00 41.22 3.07
507 524 3.496331 TGCCACGTAGGATAGATGATGA 58.504 45.455 8.04 0.00 41.22 2.92
508 525 3.507622 TGCCACGTAGGATAGATGATGAG 59.492 47.826 8.04 0.00 41.22 2.90
509 526 3.119316 GCCACGTAGGATAGATGATGAGG 60.119 52.174 8.04 0.00 41.22 3.86
510 527 4.082845 CCACGTAGGATAGATGATGAGGT 58.917 47.826 0.00 0.00 41.22 3.85
511 528 4.082517 CCACGTAGGATAGATGATGAGGTG 60.083 50.000 0.00 0.00 41.22 4.00
512 529 4.082517 CACGTAGGATAGATGATGAGGTGG 60.083 50.000 0.00 0.00 0.00 4.61
513 530 4.202577 ACGTAGGATAGATGATGAGGTGGA 60.203 45.833 0.00 0.00 0.00 4.02
514 531 4.397730 CGTAGGATAGATGATGAGGTGGAG 59.602 50.000 0.00 0.00 0.00 3.86
515 532 3.788933 AGGATAGATGATGAGGTGGAGG 58.211 50.000 0.00 0.00 0.00 4.30
516 533 3.404081 AGGATAGATGATGAGGTGGAGGA 59.596 47.826 0.00 0.00 0.00 3.71
517 534 3.768757 GGATAGATGATGAGGTGGAGGAG 59.231 52.174 0.00 0.00 0.00 3.69
518 535 4.510024 GGATAGATGATGAGGTGGAGGAGA 60.510 50.000 0.00 0.00 0.00 3.71
519 536 2.961510 AGATGATGAGGTGGAGGAGAG 58.038 52.381 0.00 0.00 0.00 3.20
520 537 2.517553 AGATGATGAGGTGGAGGAGAGA 59.482 50.000 0.00 0.00 0.00 3.10
521 538 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
522 539 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
523 540 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
524 541 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
525 542 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
526 543 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
527 544 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
528 545 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
529 546 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
530 547 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
531 548 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
532 549 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
533 550 5.654650 GTGGAGGAGAGAGAACTCATAAGAA 59.345 44.000 4.64 0.00 44.79 2.52
534 551 6.153680 GTGGAGGAGAGAGAACTCATAAGAAA 59.846 42.308 4.64 0.00 44.79 2.52
535 552 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
536 553 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
537 554 7.181569 AGGAGAGAGAACTCATAAGAAAAGG 57.818 40.000 4.64 0.00 44.79 3.11
538 555 5.815222 GGAGAGAGAACTCATAAGAAAAGGC 59.185 44.000 4.64 0.00 44.79 4.35
539 556 6.351796 GGAGAGAGAACTCATAAGAAAAGGCT 60.352 42.308 4.64 0.00 44.79 4.58
540 557 7.014988 AGAGAGAACTCATAAGAAAAGGCTT 57.985 36.000 0.00 0.00 44.79 4.35
541 558 6.878389 AGAGAGAACTCATAAGAAAAGGCTTG 59.122 38.462 0.00 0.00 44.79 4.01
542 559 6.538263 AGAGAACTCATAAGAAAAGGCTTGT 58.462 36.000 0.00 0.00 0.00 3.16
543 560 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
544 561 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
545 562 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
546 563 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
547 564 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
548 565 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
549 566 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
550 567 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
551 568 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
552 569 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
553 570 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
554 571 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
555 572 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
556 573 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
557 574 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
558 575 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
573 590 9.090103 TCTTATTTAAGAGAAGACAAGAGGTGA 57.910 33.333 0.00 0.00 37.40 4.02
574 591 9.883142 CTTATTTAAGAGAAGACAAGAGGTGAT 57.117 33.333 0.00 0.00 35.33 3.06
575 592 9.877178 TTATTTAAGAGAAGACAAGAGGTGATC 57.123 33.333 0.00 0.00 0.00 2.92
576 593 7.546250 TTTAAGAGAAGACAAGAGGTGATCT 57.454 36.000 0.00 0.00 41.27 2.75
577 594 5.659440 AAGAGAAGACAAGAGGTGATCTC 57.341 43.478 0.00 0.00 37.23 2.75
591 608 6.491714 AGGTGATCTCTTAGCACAATATGT 57.508 37.500 0.00 0.00 46.59 2.29
592 609 6.520272 AGGTGATCTCTTAGCACAATATGTC 58.480 40.000 0.00 0.00 46.59 3.06
593 610 6.326064 AGGTGATCTCTTAGCACAATATGTCT 59.674 38.462 0.00 0.00 46.59 3.41
594 611 6.644592 GGTGATCTCTTAGCACAATATGTCTC 59.355 42.308 0.00 0.00 46.59 3.36
595 612 7.205992 GTGATCTCTTAGCACAATATGTCTCA 58.794 38.462 0.00 0.00 44.13 3.27
596 613 7.168972 GTGATCTCTTAGCACAATATGTCTCAC 59.831 40.741 0.00 0.00 44.13 3.51
597 614 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
598 615 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
599 616 6.098838 TCTCTTAGCACAATATGTCTCACCAT 59.901 38.462 0.00 0.00 0.00 3.55
600 617 7.287696 TCTCTTAGCACAATATGTCTCACCATA 59.712 37.037 0.00 0.00 0.00 2.74
601 618 7.966812 TCTTAGCACAATATGTCTCACCATAT 58.033 34.615 0.00 0.00 39.20 1.78
602 619 8.432013 TCTTAGCACAATATGTCTCACCATATT 58.568 33.333 0.00 0.00 44.78 1.28
603 620 8.978874 TTAGCACAATATGTCTCACCATATTT 57.021 30.769 4.17 0.00 42.54 1.40
604 621 7.886629 AGCACAATATGTCTCACCATATTTT 57.113 32.000 4.17 0.00 42.54 1.82
605 622 8.297470 AGCACAATATGTCTCACCATATTTTT 57.703 30.769 4.17 0.00 42.54 1.94
606 623 9.407380 AGCACAATATGTCTCACCATATTTTTA 57.593 29.630 4.17 0.00 42.54 1.52
607 624 9.669353 GCACAATATGTCTCACCATATTTTTAG 57.331 33.333 4.17 0.00 42.54 1.85
646 663 7.246171 TGAAGATAAGGCTAAGATATGACCC 57.754 40.000 0.00 0.00 0.00 4.46
647 664 6.787458 TGAAGATAAGGCTAAGATATGACCCA 59.213 38.462 0.00 0.00 0.00 4.51
648 665 7.459125 TGAAGATAAGGCTAAGATATGACCCAT 59.541 37.037 0.00 0.00 0.00 4.00
649 666 7.821134 AGATAAGGCTAAGATATGACCCATT 57.179 36.000 0.00 0.00 0.00 3.16
650 667 7.628234 AGATAAGGCTAAGATATGACCCATTG 58.372 38.462 0.00 0.00 0.00 2.82
651 668 5.653255 AAGGCTAAGATATGACCCATTGT 57.347 39.130 0.00 0.00 0.00 2.71
652 669 6.763715 AAGGCTAAGATATGACCCATTGTA 57.236 37.500 0.00 0.00 0.00 2.41
653 670 6.365970 AGGCTAAGATATGACCCATTGTAG 57.634 41.667 0.00 0.00 0.00 2.74
654 671 6.084738 AGGCTAAGATATGACCCATTGTAGA 58.915 40.000 0.00 0.00 0.00 2.59
655 672 6.014156 AGGCTAAGATATGACCCATTGTAGAC 60.014 42.308 0.00 0.00 0.00 2.59
656 673 6.239600 GGCTAAGATATGACCCATTGTAGACA 60.240 42.308 0.00 0.00 0.00 3.41
657 674 7.217200 GCTAAGATATGACCCATTGTAGACAA 58.783 38.462 0.00 0.00 40.51 3.18
658 675 7.715249 GCTAAGATATGACCCATTGTAGACAAA 59.285 37.037 0.00 0.00 39.55 2.83
659 676 9.784531 CTAAGATATGACCCATTGTAGACAAAT 57.215 33.333 0.00 0.00 39.55 2.32
661 678 9.479549 AAGATATGACCCATTGTAGACAAATTT 57.520 29.630 0.00 0.00 39.55 1.82
662 679 9.479549 AGATATGACCCATTGTAGACAAATTTT 57.520 29.630 0.00 0.00 39.55 1.82
686 703 7.451501 TTTTGTCATCTCTAAATCACATGCA 57.548 32.000 0.00 0.00 0.00 3.96
687 704 7.451501 TTTGTCATCTCTAAATCACATGCAA 57.548 32.000 0.00 0.00 0.00 4.08
688 705 6.673154 TGTCATCTCTAAATCACATGCAAG 57.327 37.500 0.00 0.00 0.00 4.01
689 706 6.408869 TGTCATCTCTAAATCACATGCAAGA 58.591 36.000 0.00 0.00 0.00 3.02
690 707 6.314648 TGTCATCTCTAAATCACATGCAAGAC 59.685 38.462 0.00 0.00 0.00 3.01
691 708 6.538021 GTCATCTCTAAATCACATGCAAGACT 59.462 38.462 0.00 0.00 0.00 3.24
692 709 7.065563 GTCATCTCTAAATCACATGCAAGACTT 59.934 37.037 0.00 0.00 0.00 3.01
693 710 8.260114 TCATCTCTAAATCACATGCAAGACTTA 58.740 33.333 0.00 0.00 0.00 2.24
694 711 8.886719 CATCTCTAAATCACATGCAAGACTTAA 58.113 33.333 0.00 0.00 0.00 1.85
695 712 8.484641 TCTCTAAATCACATGCAAGACTTAAG 57.515 34.615 0.00 0.00 0.00 1.85
696 713 8.314021 TCTCTAAATCACATGCAAGACTTAAGA 58.686 33.333 10.09 0.00 0.00 2.10
697 714 9.107177 CTCTAAATCACATGCAAGACTTAAGAT 57.893 33.333 10.09 0.00 0.00 2.40
701 718 9.453572 AAATCACATGCAAGACTTAAGATAAGA 57.546 29.630 10.09 0.00 0.00 2.10
702 719 7.834068 TCACATGCAAGACTTAAGATAAGAC 57.166 36.000 10.09 0.00 0.00 3.01
703 720 7.615403 TCACATGCAAGACTTAAGATAAGACT 58.385 34.615 10.09 0.83 0.00 3.24
704 721 8.749354 TCACATGCAAGACTTAAGATAAGACTA 58.251 33.333 10.09 0.00 0.00 2.59
705 722 9.539825 CACATGCAAGACTTAAGATAAGACTAT 57.460 33.333 10.09 0.00 0.00 2.12
706 723 9.757227 ACATGCAAGACTTAAGATAAGACTATC 57.243 33.333 10.09 0.00 35.10 2.08
707 724 9.979578 CATGCAAGACTTAAGATAAGACTATCT 57.020 33.333 10.09 0.00 45.21 1.98
725 742 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
756 773 1.446272 CGCTCCAACGAACCCTCTC 60.446 63.158 0.00 0.00 34.06 3.20
774 791 3.984749 GCTCTCCGGATCTCGCCC 61.985 72.222 3.57 0.00 37.59 6.13
839 856 2.031768 GCAGAGGCATCGGATCCC 59.968 66.667 6.06 0.00 40.72 3.85
1182 1209 2.509561 GCCTTCGCCCTCTTCGTC 60.510 66.667 0.00 0.00 0.00 4.20
1191 1218 2.259818 CTCTTCGTCTGGCTGCGT 59.740 61.111 0.00 0.00 0.00 5.24
1205 1232 3.488090 GCGTCGCGGGAGGAAAAG 61.488 66.667 24.15 3.93 0.00 2.27
1404 1452 2.746277 AAGGTCATGAACGCCGCC 60.746 61.111 4.80 0.00 0.00 6.13
1458 1506 2.123077 CTCTCCCTCGCCTCCCAT 60.123 66.667 0.00 0.00 0.00 4.00
1779 1827 0.531753 GCCTCTCAGATTTCGGGCTC 60.532 60.000 0.00 0.00 36.96 4.70
1818 1866 8.629158 TCTGAAGAAGAAGATGAGTTAGATAGC 58.371 37.037 0.00 0.00 29.54 2.97
1941 1992 1.527380 GGAAGACGGTGCCACCAAA 60.527 57.895 15.45 0.00 38.47 3.28
2136 2187 1.833606 CACTGGTGGTGGTGGTGTA 59.166 57.895 0.00 0.00 41.90 2.90
2187 2238 2.360801 GGAGATCAAGAAGGAGAGACCG 59.639 54.545 0.00 0.00 44.74 4.79
2192 2243 2.820787 TCAAGAAGGAGAGACCGAAGAC 59.179 50.000 0.00 0.00 44.74 3.01
3001 3058 2.747855 GCAGGAAAGGCCGGTGAG 60.748 66.667 1.90 0.00 43.43 3.51
3002 3059 3.068881 CAGGAAAGGCCGGTGAGA 58.931 61.111 1.90 0.00 43.43 3.27
3125 3182 5.689383 TCTTGTGATAGGAAAAACAGTGC 57.311 39.130 0.00 0.00 0.00 4.40
3133 3190 3.096092 AGGAAAAACAGTGCCAGTTTCA 58.904 40.909 9.35 0.00 38.17 2.69
3155 3212 9.743057 TTTCAAATTCAACGTTGATAAGAACAT 57.257 25.926 30.10 16.42 37.00 2.71
3157 3214 7.744276 TCAAATTCAACGTTGATAAGAACATCG 59.256 33.333 30.10 13.68 37.00 3.84
3233 3298 5.698545 AGCAGTCACAGTTTCTATTCAAGTC 59.301 40.000 0.00 0.00 0.00 3.01
3236 3301 6.146837 CAGTCACAGTTTCTATTCAAGTCTGG 59.853 42.308 0.00 0.00 0.00 3.86
3251 3316 1.215647 CTGGGAAGAACCGTCTCCG 59.784 63.158 0.00 0.00 40.11 4.63
3267 3334 4.499399 CGTCTCCGTTAATCACATACACAG 59.501 45.833 0.00 0.00 0.00 3.66
3325 3400 1.312815 GCATGATACCAGCAAGACCC 58.687 55.000 0.00 0.00 0.00 4.46
3328 3403 1.656587 TGATACCAGCAAGACCCACT 58.343 50.000 0.00 0.00 0.00 4.00
3346 3421 2.231964 CACTGGATGTTGTGAATTGGGG 59.768 50.000 0.00 0.00 36.38 4.96
3351 3426 4.202620 TGGATGTTGTGAATTGGGGAGTTA 60.203 41.667 0.00 0.00 0.00 2.24
3403 3481 3.110447 TGCTTTTTGGACATGCTTTCC 57.890 42.857 0.00 0.00 0.00 3.13
3424 3502 4.012374 CCATGAAAGTATTCTGCTGTGGT 58.988 43.478 0.00 0.00 36.48 4.16
3531 3609 4.943705 TGAGATGGCACCATAACTTTTCTC 59.056 41.667 1.19 4.85 36.70 2.87
3551 3632 9.871238 TTTTCTCGAGCTAGTATATTCTTTGTT 57.129 29.630 7.81 0.00 0.00 2.83
3557 3638 5.529060 AGCTAGTATATTCTTTGTTGCTGGC 59.471 40.000 0.00 0.00 0.00 4.85
3567 3648 1.227321 GTTGCTGGCTTGCTGCAAA 60.227 52.632 16.74 0.57 46.22 3.68
3570 3651 3.131155 CTGGCTTGCTGCAAACCA 58.869 55.556 29.52 29.52 45.15 3.67
3577 3658 3.056891 GGCTTGCTGCAAACCAGTTTATA 60.057 43.478 25.56 0.00 43.71 0.98
3578 3659 3.920412 GCTTGCTGCAAACCAGTTTATAC 59.080 43.478 16.74 0.00 43.71 1.47
3579 3660 4.321230 GCTTGCTGCAAACCAGTTTATACT 60.321 41.667 16.74 0.00 43.71 2.12
3580 3661 5.772521 CTTGCTGCAAACCAGTTTATACTT 58.227 37.500 16.74 0.00 43.71 2.24
3585 3666 7.229707 TGCTGCAAACCAGTTTATACTTTAGAA 59.770 33.333 0.00 0.00 43.71 2.10
3609 3690 4.722193 GCACATGTAGGCCACTGT 57.278 55.556 5.01 0.00 0.00 3.55
3611 3692 0.321564 GCACATGTAGGCCACTGTGA 60.322 55.000 23.13 0.00 37.96 3.58
3615 3696 4.060900 CACATGTAGGCCACTGTGATATC 58.939 47.826 17.24 0.00 37.96 1.63
3616 3697 3.071602 ACATGTAGGCCACTGTGATATCC 59.928 47.826 9.86 4.96 0.00 2.59
3665 3746 3.799432 TTGTGGGCATAGTTTGGTACT 57.201 42.857 0.00 0.00 41.04 2.73
3666 3747 3.066291 TGTGGGCATAGTTTGGTACTG 57.934 47.619 0.00 0.00 37.73 2.74
3668 3749 3.583526 TGTGGGCATAGTTTGGTACTGTA 59.416 43.478 0.00 0.00 37.73 2.74
3669 3750 3.937079 GTGGGCATAGTTTGGTACTGTAC 59.063 47.826 9.46 9.46 37.73 2.90
3670 3751 3.583526 TGGGCATAGTTTGGTACTGTACA 59.416 43.478 18.79 0.00 37.73 2.90
3671 3752 4.189231 GGGCATAGTTTGGTACTGTACAG 58.811 47.826 21.44 21.44 37.73 2.74
3672 3753 3.621715 GGCATAGTTTGGTACTGTACAGC 59.378 47.826 22.90 7.36 37.73 4.40
3684 3765 5.411669 GGTACTGTACAGCAAAGCAATAGTT 59.588 40.000 22.90 0.96 0.00 2.24
3725 3837 6.015519 TGGTAATTTCCATTGTTTGAGGTCAG 60.016 38.462 0.00 0.00 31.96 3.51
3726 3838 4.525912 ATTTCCATTGTTTGAGGTCAGC 57.474 40.909 0.00 0.00 0.00 4.26
3728 3840 2.229792 TCCATTGTTTGAGGTCAGCAC 58.770 47.619 0.00 0.00 0.00 4.40
3729 3841 2.158623 TCCATTGTTTGAGGTCAGCACT 60.159 45.455 0.00 0.00 0.00 4.40
3730 3842 2.624838 CCATTGTTTGAGGTCAGCACTT 59.375 45.455 0.00 0.00 0.00 3.16
3731 3843 3.551454 CCATTGTTTGAGGTCAGCACTTG 60.551 47.826 0.00 0.00 0.00 3.16
3732 3844 2.418368 TGTTTGAGGTCAGCACTTGT 57.582 45.000 0.00 0.00 0.00 3.16
3733 3845 3.552132 TGTTTGAGGTCAGCACTTGTA 57.448 42.857 0.00 0.00 0.00 2.41
3734 3846 3.466836 TGTTTGAGGTCAGCACTTGTAG 58.533 45.455 0.00 0.00 0.00 2.74
3735 3847 3.133901 TGTTTGAGGTCAGCACTTGTAGA 59.866 43.478 0.00 0.00 0.00 2.59
3736 3848 4.127171 GTTTGAGGTCAGCACTTGTAGAA 58.873 43.478 0.00 0.00 0.00 2.10
3737 3849 4.623932 TTGAGGTCAGCACTTGTAGAAT 57.376 40.909 0.00 0.00 0.00 2.40
3739 3851 5.073311 TGAGGTCAGCACTTGTAGAATAC 57.927 43.478 0.00 0.00 43.42 1.89
3764 3902 9.002600 ACATACATATTATGTGCCTTGTACATG 57.997 33.333 17.68 12.20 44.60 3.21
3765 3903 9.002600 CATACATATTATGTGCCTTGTACATGT 57.997 33.333 17.68 2.69 44.60 3.21
3768 3906 9.402320 ACATATTATGTGCCTTGTACATGTAAA 57.598 29.630 7.25 0.00 43.01 2.01
3772 3910 9.627123 ATTATGTGCCTTGTACATGTAAATACT 57.373 29.630 7.25 0.00 39.08 2.12
3824 3962 7.967854 TGTTTGATACAAAGTCTGTTGAAACTG 59.032 33.333 0.00 0.00 39.64 3.16
3825 3963 7.624360 TTGATACAAAGTCTGTTGAAACTGT 57.376 32.000 0.00 0.00 39.64 3.55
3826 3964 7.015226 TGATACAAAGTCTGTTGAAACTGTG 57.985 36.000 0.00 0.00 39.64 3.66
3827 3965 6.597672 TGATACAAAGTCTGTTGAAACTGTGT 59.402 34.615 3.99 3.99 44.29 3.72
3828 3966 5.705609 ACAAAGTCTGTTGAAACTGTGTT 57.294 34.783 0.00 0.00 40.29 3.32
3829 3967 6.811253 ACAAAGTCTGTTGAAACTGTGTTA 57.189 33.333 0.00 0.00 40.29 2.41
3830 3968 6.842163 ACAAAGTCTGTTGAAACTGTGTTAG 58.158 36.000 0.00 0.00 40.29 2.34
3831 3969 5.485662 AAGTCTGTTGAAACTGTGTTAGC 57.514 39.130 0.00 0.00 0.00 3.09
3832 3970 4.770795 AGTCTGTTGAAACTGTGTTAGCT 58.229 39.130 0.00 0.00 0.00 3.32
3833 3971 4.572389 AGTCTGTTGAAACTGTGTTAGCTG 59.428 41.667 0.00 0.00 0.00 4.24
3834 3972 4.570772 GTCTGTTGAAACTGTGTTAGCTGA 59.429 41.667 0.00 0.00 0.00 4.26
3835 3973 5.237344 GTCTGTTGAAACTGTGTTAGCTGAT 59.763 40.000 0.00 0.00 0.00 2.90
3836 3974 6.423905 GTCTGTTGAAACTGTGTTAGCTGATA 59.576 38.462 0.00 0.00 0.00 2.15
3837 3975 7.118390 GTCTGTTGAAACTGTGTTAGCTGATAT 59.882 37.037 0.00 0.00 0.00 1.63
3838 3976 7.118245 TCTGTTGAAACTGTGTTAGCTGATATG 59.882 37.037 0.00 0.00 0.00 1.78
3839 3977 6.710295 TGTTGAAACTGTGTTAGCTGATATGT 59.290 34.615 0.00 0.00 0.00 2.29
3840 3978 7.875554 TGTTGAAACTGTGTTAGCTGATATGTA 59.124 33.333 0.00 0.00 0.00 2.29
3841 3979 8.717821 GTTGAAACTGTGTTAGCTGATATGTAA 58.282 33.333 0.00 0.00 0.00 2.41
3842 3980 8.840833 TGAAACTGTGTTAGCTGATATGTAAA 57.159 30.769 0.00 0.00 0.00 2.01
3843 3981 9.448438 TGAAACTGTGTTAGCTGATATGTAAAT 57.552 29.630 0.00 0.00 0.00 1.40
3844 3982 9.922305 GAAACTGTGTTAGCTGATATGTAAATC 57.078 33.333 0.00 0.00 0.00 2.17
3848 3986 8.208718 TGTGTTAGCTGATATGTAAATCCAAC 57.791 34.615 0.00 0.00 0.00 3.77
3851 3989 9.461312 TGTTAGCTGATATGTAAATCCAACTTT 57.539 29.630 0.00 0.00 0.00 2.66
3864 4002 7.639113 AAATCCAACTTTATGGCTAATTCGA 57.361 32.000 0.00 0.00 40.46 3.71
3867 4005 5.763204 TCCAACTTTATGGCTAATTCGATCC 59.237 40.000 0.00 0.00 40.46 3.36
3868 4006 5.048713 CCAACTTTATGGCTAATTCGATCCC 60.049 44.000 0.00 0.00 32.78 3.85
3869 4007 5.568620 ACTTTATGGCTAATTCGATCCCT 57.431 39.130 0.00 0.00 0.00 4.20
3870 4008 5.941788 ACTTTATGGCTAATTCGATCCCTT 58.058 37.500 0.00 0.00 0.00 3.95
3871 4009 5.998363 ACTTTATGGCTAATTCGATCCCTTC 59.002 40.000 0.00 0.00 0.00 3.46
3872 4010 5.825593 TTATGGCTAATTCGATCCCTTCT 57.174 39.130 0.00 0.00 0.00 2.85
3873 4011 3.475566 TGGCTAATTCGATCCCTTCTG 57.524 47.619 0.00 0.00 0.00 3.02
3874 4012 3.038280 TGGCTAATTCGATCCCTTCTGA 58.962 45.455 0.00 0.00 0.00 3.27
3875 4013 3.454447 TGGCTAATTCGATCCCTTCTGAA 59.546 43.478 0.00 0.00 0.00 3.02
3877 4015 4.443598 GGCTAATTCGATCCCTTCTGAAGT 60.444 45.833 15.72 0.00 0.00 3.01
3878 4016 5.119694 GCTAATTCGATCCCTTCTGAAGTT 58.880 41.667 15.72 4.18 0.00 2.66
3879 4017 5.586643 GCTAATTCGATCCCTTCTGAAGTTT 59.413 40.000 15.72 0.73 0.00 2.66
3880 4018 6.094186 GCTAATTCGATCCCTTCTGAAGTTTT 59.906 38.462 15.72 0.39 0.00 2.43
3881 4019 6.901081 AATTCGATCCCTTCTGAAGTTTTT 57.099 33.333 15.72 0.00 0.00 1.94
3928 4081 2.045242 CTGTGCTGATGGCTGGCT 60.045 61.111 2.00 0.00 42.39 4.75
3931 4084 1.266867 TGTGCTGATGGCTGGCTCTA 61.267 55.000 2.00 0.00 42.39 2.43
3936 4090 2.928334 CTGATGGCTGGCTCTAAATGT 58.072 47.619 2.00 0.00 0.00 2.71
3947 4101 6.519679 TGGCTCTAAATGTAAGTCGACTAA 57.480 37.500 20.39 8.28 0.00 2.24
3948 4102 6.561614 TGGCTCTAAATGTAAGTCGACTAAG 58.438 40.000 20.39 7.96 0.00 2.18
3951 4105 7.758528 GGCTCTAAATGTAAGTCGACTAAGAAA 59.241 37.037 20.39 2.77 0.00 2.52
3952 4106 8.585436 GCTCTAAATGTAAGTCGACTAAGAAAC 58.415 37.037 20.39 12.35 0.00 2.78
3953 4107 8.976986 TCTAAATGTAAGTCGACTAAGAAACC 57.023 34.615 20.39 2.57 0.00 3.27
3956 4110 8.441312 AAATGTAAGTCGACTAAGAAACCAAA 57.559 30.769 20.39 0.00 0.00 3.28
3958 4112 7.237920 TGTAAGTCGACTAAGAAACCAAAAC 57.762 36.000 20.39 3.83 0.00 2.43
3959 4113 6.817641 TGTAAGTCGACTAAGAAACCAAAACA 59.182 34.615 20.39 6.16 0.00 2.83
3960 4114 5.729974 AGTCGACTAAGAAACCAAAACAC 57.270 39.130 18.46 0.00 0.00 3.32
3961 4115 5.425630 AGTCGACTAAGAAACCAAAACACT 58.574 37.500 18.46 0.00 0.00 3.55
3962 4116 6.576185 AGTCGACTAAGAAACCAAAACACTA 58.424 36.000 18.46 0.00 0.00 2.74
3963 4117 7.043565 AGTCGACTAAGAAACCAAAACACTAA 58.956 34.615 18.46 0.00 0.00 2.24
3964 4118 7.224167 AGTCGACTAAGAAACCAAAACACTAAG 59.776 37.037 18.46 0.00 0.00 2.18
3965 4119 6.480981 TCGACTAAGAAACCAAAACACTAAGG 59.519 38.462 0.00 0.00 0.00 2.69
3966 4120 6.293244 CGACTAAGAAACCAAAACACTAAGGG 60.293 42.308 0.00 0.00 0.00 3.95
3967 4121 4.665833 AAGAAACCAAAACACTAAGGGC 57.334 40.909 0.00 0.00 0.00 5.19
3968 4122 3.910989 AGAAACCAAAACACTAAGGGCT 58.089 40.909 0.00 0.00 0.00 5.19
3969 4123 3.889538 AGAAACCAAAACACTAAGGGCTC 59.110 43.478 0.00 0.00 0.00 4.70
3970 4124 2.287977 ACCAAAACACTAAGGGCTCC 57.712 50.000 0.00 0.00 0.00 4.70
3971 4125 1.780919 ACCAAAACACTAAGGGCTCCT 59.219 47.619 0.00 0.00 33.87 3.69
3972 4126 2.177016 ACCAAAACACTAAGGGCTCCTT 59.823 45.455 10.76 10.76 46.63 3.36
3973 4127 3.230976 CCAAAACACTAAGGGCTCCTTT 58.769 45.455 11.15 0.00 41.69 3.11
3974 4128 3.005791 CCAAAACACTAAGGGCTCCTTTG 59.994 47.826 11.15 11.48 41.69 2.77
3975 4129 3.876309 AAACACTAAGGGCTCCTTTGA 57.124 42.857 17.52 0.99 41.69 2.69
3976 4130 4.388577 AAACACTAAGGGCTCCTTTGAT 57.611 40.909 17.52 3.63 41.69 2.57
3977 4131 4.388577 AACACTAAGGGCTCCTTTGATT 57.611 40.909 17.52 10.72 41.69 2.57
3978 4132 3.956744 ACACTAAGGGCTCCTTTGATTC 58.043 45.455 17.52 0.00 41.69 2.52
3979 4133 3.330701 ACACTAAGGGCTCCTTTGATTCA 59.669 43.478 17.52 0.00 41.69 2.57
3980 4134 4.202567 ACACTAAGGGCTCCTTTGATTCAA 60.203 41.667 17.52 0.00 41.69 2.69
3981 4135 4.766891 CACTAAGGGCTCCTTTGATTCAAA 59.233 41.667 17.52 11.19 41.69 2.69
3994 4148 7.766219 CTTTGATTCAAAGGAATTGCATAGG 57.234 36.000 25.14 2.45 44.75 2.57
3995 4149 7.479352 TTTGATTCAAAGGAATTGCATAGGA 57.521 32.000 7.74 0.00 43.69 2.94
3996 4150 7.664552 TTGATTCAAAGGAATTGCATAGGAT 57.335 32.000 0.00 0.00 43.69 3.24
3997 4151 7.664552 TGATTCAAAGGAATTGCATAGGATT 57.335 32.000 0.00 0.00 43.69 3.01
3998 4152 8.081517 TGATTCAAAGGAATTGCATAGGATTT 57.918 30.769 0.00 0.00 43.69 2.17
3999 4153 8.542080 TGATTCAAAGGAATTGCATAGGATTTT 58.458 29.630 0.00 0.00 43.69 1.82
4000 4154 9.387257 GATTCAAAGGAATTGCATAGGATTTTT 57.613 29.630 0.00 0.00 43.69 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.985315 ATGTGAAAGGAGCTTCAAATGATATA 57.015 30.769 0.00 0.00 37.08 0.86
1 2 7.893124 ATGTGAAAGGAGCTTCAAATGATAT 57.107 32.000 0.00 0.00 37.08 1.63
2 3 7.011389 CGTATGTGAAAGGAGCTTCAAATGATA 59.989 37.037 0.00 0.00 37.08 2.15
3 4 6.183360 CGTATGTGAAAGGAGCTTCAAATGAT 60.183 38.462 0.00 0.00 37.08 2.45
4 5 5.122239 CGTATGTGAAAGGAGCTTCAAATGA 59.878 40.000 0.00 0.00 37.08 2.57
5 6 5.122239 TCGTATGTGAAAGGAGCTTCAAATG 59.878 40.000 0.00 0.00 37.08 2.32
6 7 5.245531 TCGTATGTGAAAGGAGCTTCAAAT 58.754 37.500 0.00 0.00 37.08 2.32
7 8 4.637276 TCGTATGTGAAAGGAGCTTCAAA 58.363 39.130 0.00 0.00 37.08 2.69
8 9 4.265904 TCGTATGTGAAAGGAGCTTCAA 57.734 40.909 0.00 0.00 37.08 2.69
9 10 3.953712 TCGTATGTGAAAGGAGCTTCA 57.046 42.857 0.00 0.00 32.89 3.02
10 11 5.803020 AATTCGTATGTGAAAGGAGCTTC 57.197 39.130 0.00 0.00 0.00 3.86
11 12 5.705441 TCAAATTCGTATGTGAAAGGAGCTT 59.295 36.000 0.00 0.00 0.00 3.74
12 13 5.122396 GTCAAATTCGTATGTGAAAGGAGCT 59.878 40.000 0.00 0.00 29.80 4.09
13 14 5.324697 GTCAAATTCGTATGTGAAAGGAGC 58.675 41.667 0.00 0.00 29.80 4.70
14 15 5.445939 CCGTCAAATTCGTATGTGAAAGGAG 60.446 44.000 10.57 0.00 33.27 3.69
15 16 4.390603 CCGTCAAATTCGTATGTGAAAGGA 59.609 41.667 10.57 0.00 33.27 3.36
16 17 4.153475 ACCGTCAAATTCGTATGTGAAAGG 59.847 41.667 13.13 13.13 35.64 3.11
17 18 5.277601 ACCGTCAAATTCGTATGTGAAAG 57.722 39.130 0.00 0.00 29.80 2.62
18 19 6.673556 GCATACCGTCAAATTCGTATGTGAAA 60.674 38.462 0.00 0.00 29.80 2.69
19 20 5.220510 GCATACCGTCAAATTCGTATGTGAA 60.221 40.000 0.00 0.00 29.80 3.18
20 21 4.269123 GCATACCGTCAAATTCGTATGTGA 59.731 41.667 0.00 0.00 31.72 3.58
21 22 4.270084 AGCATACCGTCAAATTCGTATGTG 59.730 41.667 0.00 0.00 31.72 3.21
22 23 4.439057 AGCATACCGTCAAATTCGTATGT 58.561 39.130 0.00 0.00 31.72 2.29
23 24 5.403897 AAGCATACCGTCAAATTCGTATG 57.596 39.130 0.00 0.00 0.00 2.39
24 25 5.353123 ACAAAGCATACCGTCAAATTCGTAT 59.647 36.000 0.00 0.00 0.00 3.06
25 26 4.691685 ACAAAGCATACCGTCAAATTCGTA 59.308 37.500 0.00 0.00 0.00 3.43
26 27 3.500680 ACAAAGCATACCGTCAAATTCGT 59.499 39.130 0.00 0.00 0.00 3.85
27 28 3.845775 CACAAAGCATACCGTCAAATTCG 59.154 43.478 0.00 0.00 0.00 3.34
28 29 4.794169 ACACAAAGCATACCGTCAAATTC 58.206 39.130 0.00 0.00 0.00 2.17
29 30 4.846779 ACACAAAGCATACCGTCAAATT 57.153 36.364 0.00 0.00 0.00 1.82
30 31 5.472137 ACTTACACAAAGCATACCGTCAAAT 59.528 36.000 0.00 0.00 38.93 2.32
31 32 4.817464 ACTTACACAAAGCATACCGTCAAA 59.183 37.500 0.00 0.00 38.93 2.69
32 33 4.382291 ACTTACACAAAGCATACCGTCAA 58.618 39.130 0.00 0.00 38.93 3.18
33 34 3.997762 ACTTACACAAAGCATACCGTCA 58.002 40.909 0.00 0.00 38.93 4.35
34 35 4.708601 CAACTTACACAAAGCATACCGTC 58.291 43.478 0.00 0.00 38.93 4.79
35 36 3.058501 GCAACTTACACAAAGCATACCGT 60.059 43.478 0.00 0.00 38.93 4.83
36 37 3.058570 TGCAACTTACACAAAGCATACCG 60.059 43.478 0.00 0.00 38.93 4.02
37 38 4.497473 TGCAACTTACACAAAGCATACC 57.503 40.909 0.00 0.00 38.93 2.73
38 39 5.460646 ACATGCAACTTACACAAAGCATAC 58.539 37.500 0.00 0.00 40.38 2.39
39 40 5.240403 TGACATGCAACTTACACAAAGCATA 59.760 36.000 0.00 0.00 40.38 3.14
40 41 4.037803 TGACATGCAACTTACACAAAGCAT 59.962 37.500 0.00 0.00 42.82 3.79
41 42 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
42 43 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
78 79 9.757227 TTTCGAGATTAATTTTGACCAAATGTT 57.243 25.926 0.00 0.00 35.09 2.71
79 80 9.757227 TTTTCGAGATTAATTTTGACCAAATGT 57.243 25.926 0.00 0.00 35.09 2.71
82 83 8.747666 CGTTTTTCGAGATTAATTTTGACCAAA 58.252 29.630 0.00 0.00 42.86 3.28
83 84 7.096394 GCGTTTTTCGAGATTAATTTTGACCAA 60.096 33.333 0.00 0.00 42.86 3.67
84 85 6.361214 GCGTTTTTCGAGATTAATTTTGACCA 59.639 34.615 0.00 0.00 42.86 4.02
85 86 6.361214 TGCGTTTTTCGAGATTAATTTTGACC 59.639 34.615 0.00 0.00 42.86 4.02
86 87 7.315419 TGCGTTTTTCGAGATTAATTTTGAC 57.685 32.000 0.00 0.00 42.86 3.18
87 88 8.514136 AATGCGTTTTTCGAGATTAATTTTGA 57.486 26.923 0.00 0.00 42.86 2.69
90 91 8.583765 GCTTAATGCGTTTTTCGAGATTAATTT 58.416 29.630 0.00 0.00 42.86 1.82
91 92 8.104222 GCTTAATGCGTTTTTCGAGATTAATT 57.896 30.769 0.00 0.00 42.86 1.40
92 93 7.665080 GCTTAATGCGTTTTTCGAGATTAAT 57.335 32.000 0.00 0.00 42.86 1.40
113 114 9.105844 TGCCTCCTTTTTATCTATATAGAGCTT 57.894 33.333 17.22 4.34 35.50 3.74
114 115 8.671987 TGCCTCCTTTTTATCTATATAGAGCT 57.328 34.615 17.22 5.02 35.50 4.09
115 116 8.536175 ACTGCCTCCTTTTTATCTATATAGAGC 58.464 37.037 17.22 11.23 35.50 4.09
120 121 8.817876 GGAGTACTGCCTCCTTTTTATCTATAT 58.182 37.037 0.00 0.00 46.34 0.86
121 122 8.191534 GGAGTACTGCCTCCTTTTTATCTATA 57.808 38.462 0.00 0.00 46.34 1.31
122 123 7.068686 GGAGTACTGCCTCCTTTTTATCTAT 57.931 40.000 0.00 0.00 46.34 1.98
123 124 6.481434 GGAGTACTGCCTCCTTTTTATCTA 57.519 41.667 0.00 0.00 46.34 1.98
124 125 5.360649 GGAGTACTGCCTCCTTTTTATCT 57.639 43.478 0.00 0.00 46.34 1.98
134 135 7.011576 GCTTTCTTAAAATAGGAGTACTGCCTC 59.988 40.741 11.20 0.00 36.96 4.70
135 136 6.824196 GCTTTCTTAAAATAGGAGTACTGCCT 59.176 38.462 11.20 13.77 39.56 4.75
136 137 6.238130 CGCTTTCTTAAAATAGGAGTACTGCC 60.238 42.308 11.20 6.99 0.00 4.85
137 138 6.534079 TCGCTTTCTTAAAATAGGAGTACTGC 59.466 38.462 6.22 6.22 0.00 4.40
138 139 8.475331 TTCGCTTTCTTAAAATAGGAGTACTG 57.525 34.615 0.00 0.00 0.00 2.74
139 140 8.529476 TCTTCGCTTTCTTAAAATAGGAGTACT 58.471 33.333 0.00 0.00 0.00 2.73
140 141 8.699283 TCTTCGCTTTCTTAAAATAGGAGTAC 57.301 34.615 0.00 0.00 0.00 2.73
141 142 9.148104 GTTCTTCGCTTTCTTAAAATAGGAGTA 57.852 33.333 0.00 0.00 0.00 2.59
142 143 7.878644 AGTTCTTCGCTTTCTTAAAATAGGAGT 59.121 33.333 0.00 0.00 0.00 3.85
143 144 8.257830 AGTTCTTCGCTTTCTTAAAATAGGAG 57.742 34.615 0.00 0.00 0.00 3.69
144 145 8.617290 AAGTTCTTCGCTTTCTTAAAATAGGA 57.383 30.769 0.00 0.00 0.00 2.94
145 146 9.331106 GAAAGTTCTTCGCTTTCTTAAAATAGG 57.669 33.333 9.67 0.00 44.86 2.57
146 147 9.041587 CGAAAGTTCTTCGCTTTCTTAAAATAG 57.958 33.333 13.56 0.00 45.62 1.73
147 148 8.013378 CCGAAAGTTCTTCGCTTTCTTAAAATA 58.987 33.333 13.56 0.00 45.62 1.40
148 149 6.856426 CCGAAAGTTCTTCGCTTTCTTAAAAT 59.144 34.615 13.56 0.00 45.62 1.82
149 150 6.183360 ACCGAAAGTTCTTCGCTTTCTTAAAA 60.183 34.615 13.56 0.00 45.62 1.52
150 151 5.295045 ACCGAAAGTTCTTCGCTTTCTTAAA 59.705 36.000 13.56 0.00 45.62 1.52
151 152 4.812626 ACCGAAAGTTCTTCGCTTTCTTAA 59.187 37.500 13.56 0.00 45.62 1.85
152 153 4.374399 ACCGAAAGTTCTTCGCTTTCTTA 58.626 39.130 13.56 0.00 45.62 2.10
153 154 3.203716 ACCGAAAGTTCTTCGCTTTCTT 58.796 40.909 13.56 1.38 45.62 2.52
177 178 2.158914 AGCAAGGCAAAAAGGTTGAAGG 60.159 45.455 0.00 0.00 0.00 3.46
178 179 3.183793 AGCAAGGCAAAAAGGTTGAAG 57.816 42.857 0.00 0.00 0.00 3.02
197 198 4.141937 TGACATTTCTTCCCCTCACGATAG 60.142 45.833 0.00 0.00 46.19 2.08
208 211 6.372659 TGTCTGCTCTTAATGACATTTCTTCC 59.627 38.462 5.89 0.00 34.94 3.46
355 372 0.179089 CAGGATGAGGTCAAGAGCGG 60.179 60.000 0.00 0.00 39.69 5.52
452 469 1.064463 ACCATTGTACATGCCCTGAGG 60.064 52.381 0.00 0.00 0.00 3.86
453 470 2.425143 ACCATTGTACATGCCCTGAG 57.575 50.000 0.00 0.00 0.00 3.35
454 471 2.308570 AGAACCATTGTACATGCCCTGA 59.691 45.455 0.00 0.00 0.00 3.86
455 472 2.726821 AGAACCATTGTACATGCCCTG 58.273 47.619 0.00 0.00 0.00 4.45
456 473 4.413520 AGATAGAACCATTGTACATGCCCT 59.586 41.667 0.00 0.00 0.00 5.19
457 474 4.718961 AGATAGAACCATTGTACATGCCC 58.281 43.478 0.00 0.00 0.00 5.36
458 475 6.073003 GCTAAGATAGAACCATTGTACATGCC 60.073 42.308 0.00 0.00 0.00 4.40
459 476 6.483307 TGCTAAGATAGAACCATTGTACATGC 59.517 38.462 0.00 0.00 0.00 4.06
460 477 8.437360 TTGCTAAGATAGAACCATTGTACATG 57.563 34.615 0.00 0.00 0.00 3.21
461 478 9.060347 CATTGCTAAGATAGAACCATTGTACAT 57.940 33.333 0.00 0.00 0.00 2.29
462 479 7.012327 GCATTGCTAAGATAGAACCATTGTACA 59.988 37.037 0.16 0.00 0.00 2.90
463 480 7.355778 GCATTGCTAAGATAGAACCATTGTAC 58.644 38.462 0.16 0.00 0.00 2.90
464 481 6.486657 GGCATTGCTAAGATAGAACCATTGTA 59.513 38.462 8.82 0.00 0.00 2.41
465 482 5.300286 GGCATTGCTAAGATAGAACCATTGT 59.700 40.000 8.82 0.00 0.00 2.71
466 483 5.300034 TGGCATTGCTAAGATAGAACCATTG 59.700 40.000 8.82 0.00 0.00 2.82
467 484 5.300286 GTGGCATTGCTAAGATAGAACCATT 59.700 40.000 8.82 0.00 0.00 3.16
468 485 4.823989 GTGGCATTGCTAAGATAGAACCAT 59.176 41.667 8.82 0.00 0.00 3.55
469 486 4.199310 GTGGCATTGCTAAGATAGAACCA 58.801 43.478 8.82 0.00 0.00 3.67
470 487 3.248602 CGTGGCATTGCTAAGATAGAACC 59.751 47.826 8.82 0.00 0.00 3.62
471 488 3.871594 ACGTGGCATTGCTAAGATAGAAC 59.128 43.478 14.29 0.00 0.00 3.01
472 489 4.137116 ACGTGGCATTGCTAAGATAGAA 57.863 40.909 14.29 0.00 0.00 2.10
473 490 3.819564 ACGTGGCATTGCTAAGATAGA 57.180 42.857 14.29 0.00 0.00 1.98
474 491 3.990469 CCTACGTGGCATTGCTAAGATAG 59.010 47.826 14.29 11.05 0.00 2.08
475 492 3.639561 TCCTACGTGGCATTGCTAAGATA 59.360 43.478 14.29 3.37 35.26 1.98
476 493 2.434336 TCCTACGTGGCATTGCTAAGAT 59.566 45.455 14.29 2.45 35.26 2.40
477 494 1.828595 TCCTACGTGGCATTGCTAAGA 59.171 47.619 14.29 0.00 35.26 2.10
478 495 2.309528 TCCTACGTGGCATTGCTAAG 57.690 50.000 8.82 7.52 35.26 2.18
479 496 3.639561 TCTATCCTACGTGGCATTGCTAA 59.360 43.478 8.82 0.00 35.26 3.09
480 497 3.227614 TCTATCCTACGTGGCATTGCTA 58.772 45.455 8.82 0.00 35.26 3.49
481 498 2.039418 TCTATCCTACGTGGCATTGCT 58.961 47.619 8.82 0.00 35.26 3.91
482 499 2.526304 TCTATCCTACGTGGCATTGC 57.474 50.000 0.00 0.00 35.26 3.56
483 500 4.257267 TCATCTATCCTACGTGGCATTG 57.743 45.455 0.00 0.00 35.26 2.82
484 501 4.528206 TCATCATCTATCCTACGTGGCATT 59.472 41.667 0.00 0.00 35.26 3.56
485 502 4.089361 TCATCATCTATCCTACGTGGCAT 58.911 43.478 0.00 0.00 35.26 4.40
486 503 3.496331 TCATCATCTATCCTACGTGGCA 58.504 45.455 0.00 0.00 35.26 4.92
487 504 3.119316 CCTCATCATCTATCCTACGTGGC 60.119 52.174 0.00 0.00 35.26 5.01
488 505 4.082517 CACCTCATCATCTATCCTACGTGG 60.083 50.000 0.00 0.00 37.10 4.94
489 506 4.082517 CCACCTCATCATCTATCCTACGTG 60.083 50.000 0.00 0.00 0.00 4.49
490 507 4.082845 CCACCTCATCATCTATCCTACGT 58.917 47.826 0.00 0.00 0.00 3.57
491 508 4.336280 TCCACCTCATCATCTATCCTACG 58.664 47.826 0.00 0.00 0.00 3.51
492 509 4.709397 CCTCCACCTCATCATCTATCCTAC 59.291 50.000 0.00 0.00 0.00 3.18
493 510 4.608028 TCCTCCACCTCATCATCTATCCTA 59.392 45.833 0.00 0.00 0.00 2.94
494 511 3.404081 TCCTCCACCTCATCATCTATCCT 59.596 47.826 0.00 0.00 0.00 3.24
495 512 3.768757 CTCCTCCACCTCATCATCTATCC 59.231 52.174 0.00 0.00 0.00 2.59
496 513 4.671831 TCTCCTCCACCTCATCATCTATC 58.328 47.826 0.00 0.00 0.00 2.08
497 514 4.356492 TCTCTCCTCCACCTCATCATCTAT 59.644 45.833 0.00 0.00 0.00 1.98
498 515 3.724209 TCTCTCCTCCACCTCATCATCTA 59.276 47.826 0.00 0.00 0.00 1.98
499 516 2.517553 TCTCTCCTCCACCTCATCATCT 59.482 50.000 0.00 0.00 0.00 2.90
500 517 2.892852 CTCTCTCCTCCACCTCATCATC 59.107 54.545 0.00 0.00 0.00 2.92
501 518 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
502 519 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
503 520 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
504 521 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
505 522 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
506 523 2.291282 TGAGTTCTCTCTCCTCCACCTC 60.291 54.545 1.53 0.00 40.98 3.85
507 524 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
508 525 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
509 526 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
510 527 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
511 528 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
512 529 7.264947 CCTTTTCTTATGAGTTCTCTCTCCTC 58.735 42.308 1.53 0.00 40.98 3.71
513 530 6.351796 GCCTTTTCTTATGAGTTCTCTCTCCT 60.352 42.308 1.53 0.00 40.98 3.69
514 531 5.815222 GCCTTTTCTTATGAGTTCTCTCTCC 59.185 44.000 1.53 0.00 40.98 3.71
515 532 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
516 533 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
517 534 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
518 535 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
519 536 6.652900 AGACAAGCCTTTTCTTATGAGTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
520 537 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
521 538 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
522 539 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
523 540 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
524 541 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
525 542 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
526 543 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
528 545 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
529 546 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
530 547 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
531 548 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
532 549 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
547 564 9.090103 TCACCTCTTGTCTTCTCTTAAATAAGA 57.910 33.333 3.08 3.08 39.82 2.10
548 565 9.883142 ATCACCTCTTGTCTTCTCTTAAATAAG 57.117 33.333 0.00 0.00 34.65 1.73
549 566 9.877178 GATCACCTCTTGTCTTCTCTTAAATAA 57.123 33.333 0.00 0.00 0.00 1.40
550 567 9.261035 AGATCACCTCTTGTCTTCTCTTAAATA 57.739 33.333 0.00 0.00 0.00 1.40
551 568 8.144862 AGATCACCTCTTGTCTTCTCTTAAAT 57.855 34.615 0.00 0.00 0.00 1.40
552 569 7.546250 AGATCACCTCTTGTCTTCTCTTAAA 57.454 36.000 0.00 0.00 0.00 1.52
553 570 7.164230 GAGATCACCTCTTGTCTTCTCTTAA 57.836 40.000 0.00 0.00 38.86 1.85
554 571 6.767524 GAGATCACCTCTTGTCTTCTCTTA 57.232 41.667 0.00 0.00 38.86 2.10
555 572 5.659440 GAGATCACCTCTTGTCTTCTCTT 57.341 43.478 0.00 0.00 38.86 2.85
567 584 6.520272 ACATATTGTGCTAAGAGATCACCTC 58.480 40.000 0.00 0.00 42.28 3.85
568 585 6.326064 AGACATATTGTGCTAAGAGATCACCT 59.674 38.462 0.00 0.00 0.00 4.00
569 586 6.520272 AGACATATTGTGCTAAGAGATCACC 58.480 40.000 0.00 0.00 0.00 4.02
570 587 7.168972 GTGAGACATATTGTGCTAAGAGATCAC 59.831 40.741 0.00 0.00 0.00 3.06
571 588 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
572 589 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
573 590 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
574 591 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
575 592 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
576 593 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
577 594 8.613060 AATATGGTGAGACATATTGTGCTAAG 57.387 34.615 9.82 0.00 46.68 2.18
620 637 8.325046 GGGTCATATCTTAGCCTTATCTTCAAT 58.675 37.037 0.00 0.00 0.00 2.57
621 638 7.292356 TGGGTCATATCTTAGCCTTATCTTCAA 59.708 37.037 0.00 0.00 34.30 2.69
622 639 6.787458 TGGGTCATATCTTAGCCTTATCTTCA 59.213 38.462 0.00 0.00 34.30 3.02
623 640 7.246171 TGGGTCATATCTTAGCCTTATCTTC 57.754 40.000 0.00 0.00 34.30 2.87
624 641 7.821134 ATGGGTCATATCTTAGCCTTATCTT 57.179 36.000 0.00 0.00 34.30 2.40
625 642 7.238514 ACAATGGGTCATATCTTAGCCTTATCT 59.761 37.037 0.00 0.00 34.30 1.98
626 643 7.398024 ACAATGGGTCATATCTTAGCCTTATC 58.602 38.462 0.00 0.00 34.30 1.75
627 644 7.335127 ACAATGGGTCATATCTTAGCCTTAT 57.665 36.000 0.00 0.00 34.30 1.73
628 645 6.763715 ACAATGGGTCATATCTTAGCCTTA 57.236 37.500 0.00 0.00 34.30 2.69
629 646 5.653255 ACAATGGGTCATATCTTAGCCTT 57.347 39.130 0.00 0.00 34.30 4.35
630 647 6.014156 GTCTACAATGGGTCATATCTTAGCCT 60.014 42.308 0.00 0.00 34.30 4.58
631 648 6.166982 GTCTACAATGGGTCATATCTTAGCC 58.833 44.000 0.00 0.00 0.00 3.93
632 649 6.759272 TGTCTACAATGGGTCATATCTTAGC 58.241 40.000 0.00 0.00 0.00 3.09
633 650 9.784531 ATTTGTCTACAATGGGTCATATCTTAG 57.215 33.333 0.00 0.00 35.55 2.18
635 652 9.479549 AAATTTGTCTACAATGGGTCATATCTT 57.520 29.630 0.00 0.00 35.55 2.40
636 653 9.479549 AAAATTTGTCTACAATGGGTCATATCT 57.520 29.630 0.00 0.00 35.55 1.98
661 678 7.884257 TGCATGTGATTTAGAGATGACAAAAA 58.116 30.769 0.00 0.00 27.25 1.94
662 679 7.451501 TGCATGTGATTTAGAGATGACAAAA 57.548 32.000 0.00 0.00 27.25 2.44
663 680 7.391275 TCTTGCATGTGATTTAGAGATGACAAA 59.609 33.333 0.00 0.00 27.25 2.83
664 681 6.880529 TCTTGCATGTGATTTAGAGATGACAA 59.119 34.615 0.00 0.00 27.25 3.18
665 682 6.314648 GTCTTGCATGTGATTTAGAGATGACA 59.685 38.462 0.00 0.00 0.00 3.58
666 683 6.538021 AGTCTTGCATGTGATTTAGAGATGAC 59.462 38.462 0.00 0.00 0.00 3.06
667 684 6.647229 AGTCTTGCATGTGATTTAGAGATGA 58.353 36.000 0.00 0.00 0.00 2.92
668 685 6.922247 AGTCTTGCATGTGATTTAGAGATG 57.078 37.500 0.00 0.00 0.00 2.90
669 686 9.107177 CTTAAGTCTTGCATGTGATTTAGAGAT 57.893 33.333 0.00 0.00 0.00 2.75
670 687 8.314021 TCTTAAGTCTTGCATGTGATTTAGAGA 58.686 33.333 1.63 4.66 0.00 3.10
671 688 8.484641 TCTTAAGTCTTGCATGTGATTTAGAG 57.515 34.615 1.63 2.95 0.00 2.43
675 692 9.453572 TCTTATCTTAAGTCTTGCATGTGATTT 57.546 29.630 1.63 0.00 0.00 2.17
676 693 8.887717 GTCTTATCTTAAGTCTTGCATGTGATT 58.112 33.333 1.63 0.00 0.00 2.57
677 694 8.263640 AGTCTTATCTTAAGTCTTGCATGTGAT 58.736 33.333 1.63 0.00 0.00 3.06
678 695 7.615403 AGTCTTATCTTAAGTCTTGCATGTGA 58.385 34.615 1.63 0.00 0.00 3.58
679 696 7.840342 AGTCTTATCTTAAGTCTTGCATGTG 57.160 36.000 1.63 0.00 0.00 3.21
680 697 9.757227 GATAGTCTTATCTTAAGTCTTGCATGT 57.243 33.333 1.63 0.00 34.16 3.21
681 698 9.979578 AGATAGTCTTATCTTAAGTCTTGCATG 57.020 33.333 1.63 0.00 42.67 4.06
699 716 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
700 717 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
701 718 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
702 719 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
703 720 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
704 721 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
705 722 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
706 723 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
707 724 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
708 725 4.080072 TGAGGGCATGTACAATGGTTGATA 60.080 41.667 0.00 0.00 0.00 2.15
709 726 3.290710 GAGGGCATGTACAATGGTTGAT 58.709 45.455 0.00 0.00 0.00 2.57
710 727 2.040947 TGAGGGCATGTACAATGGTTGA 59.959 45.455 0.00 0.00 0.00 3.18
711 728 2.164219 GTGAGGGCATGTACAATGGTTG 59.836 50.000 0.00 0.00 0.00 3.77
712 729 2.041620 AGTGAGGGCATGTACAATGGTT 59.958 45.455 0.00 0.00 0.00 3.67
713 730 1.635487 AGTGAGGGCATGTACAATGGT 59.365 47.619 0.00 0.00 0.00 3.55
714 731 2.019249 CAGTGAGGGCATGTACAATGG 58.981 52.381 0.00 0.00 0.00 3.16
715 732 2.679837 GTCAGTGAGGGCATGTACAATG 59.320 50.000 0.00 0.12 0.00 2.82
716 733 2.356125 GGTCAGTGAGGGCATGTACAAT 60.356 50.000 0.00 0.00 0.00 2.71
717 734 1.003118 GGTCAGTGAGGGCATGTACAA 59.997 52.381 0.00 0.00 0.00 2.41
718 735 0.613260 GGTCAGTGAGGGCATGTACA 59.387 55.000 0.00 0.00 0.00 2.90
719 736 0.107654 GGGTCAGTGAGGGCATGTAC 60.108 60.000 0.00 0.00 0.00 2.90
720 737 1.613317 CGGGTCAGTGAGGGCATGTA 61.613 60.000 0.00 0.00 0.00 2.29
721 738 2.959484 CGGGTCAGTGAGGGCATGT 61.959 63.158 0.00 0.00 0.00 3.21
722 739 2.124983 CGGGTCAGTGAGGGCATG 60.125 66.667 0.00 0.00 0.00 4.06
723 740 4.101448 GCGGGTCAGTGAGGGCAT 62.101 66.667 0.00 0.00 0.00 4.40
725 742 4.459089 GAGCGGGTCAGTGAGGGC 62.459 72.222 1.64 0.00 0.00 5.19
756 773 4.335584 GGCGAGATCCGGAGAGCG 62.336 72.222 11.34 14.03 39.04 5.03
870 887 0.106894 CCTAATCTGAACCTCGGCCC 59.893 60.000 0.00 0.00 0.00 5.80
1176 1203 3.175240 CGACGCAGCCAGACGAAG 61.175 66.667 0.00 0.00 0.00 3.79
1191 1218 4.752879 CGCCTTTTCCTCCCGCGA 62.753 66.667 8.23 0.00 45.41 5.87
1264 1312 2.097038 GCAGCTGCTGGTACGACAG 61.097 63.158 31.33 2.65 41.41 3.51
1779 1827 1.746727 CTTCAGACTTGATCCGCGCG 61.747 60.000 25.67 25.67 32.27 6.86
1818 1866 1.448985 CATTGTCCCCAAGTACACCG 58.551 55.000 0.00 0.00 33.17 4.94
1909 1960 3.000727 CGTCTTCCCCATTCACTACAAC 58.999 50.000 0.00 0.00 0.00 3.32
1941 1992 2.495004 CCCCTCATCATCCTCTGGAGAT 60.495 54.545 0.00 0.00 34.05 2.75
2007 2058 6.392354 TCCACTACCAACACTAGTTTTATCG 58.608 40.000 0.00 0.00 35.28 2.92
2120 2171 1.604604 CTTTACACCACCACCACCAG 58.395 55.000 0.00 0.00 0.00 4.00
2136 2187 9.305555 CTAATCCATTCCATCACATAATCCTTT 57.694 33.333 0.00 0.00 0.00 3.11
2187 2238 1.940613 CCGGAAATCCAATCGGTCTTC 59.059 52.381 0.00 0.00 37.92 2.87
2192 2243 0.463654 TGCTCCGGAAATCCAATCGG 60.464 55.000 5.23 0.00 43.42 4.18
2486 2543 2.241160 TGCTACTCCTTACACCGTCAA 58.759 47.619 0.00 0.00 0.00 3.18
2880 2937 1.004440 AAGCACCTCCTCGCTTGAC 60.004 57.895 0.00 0.00 46.41 3.18
3001 3058 6.966021 TGCATCTAACCAACAAACTAAACTC 58.034 36.000 0.00 0.00 0.00 3.01
3002 3059 6.952773 TGCATCTAACCAACAAACTAAACT 57.047 33.333 0.00 0.00 0.00 2.66
3125 3182 7.860373 TCTTATCAACGTTGAATTTGAAACTGG 59.140 33.333 32.69 11.62 41.13 4.00
3133 3190 7.802738 TCGATGTTCTTATCAACGTTGAATTT 58.197 30.769 32.69 19.92 41.13 1.82
3155 3212 4.837093 AAATGGTTAGACTGGGAATCGA 57.163 40.909 0.00 0.00 0.00 3.59
3157 3214 8.519799 TCAATTAAATGGTTAGACTGGGAATC 57.480 34.615 0.00 0.00 0.00 2.52
3325 3400 2.231964 CCCCAATTCACAACATCCAGTG 59.768 50.000 0.00 0.00 37.10 3.66
3328 3403 2.109834 ACTCCCCAATTCACAACATCCA 59.890 45.455 0.00 0.00 0.00 3.41
3346 3421 4.884744 TCTACCAGCACAGAGAGATAACTC 59.115 45.833 0.00 0.00 42.90 3.01
3351 3426 3.023119 CAGTCTACCAGCACAGAGAGAT 58.977 50.000 0.00 0.00 0.00 2.75
3403 3481 5.633830 AACCACAGCAGAATACTTTCATG 57.366 39.130 0.00 0.00 34.08 3.07
3424 3502 0.662619 CACGCCTGTTTGCTCTCAAA 59.337 50.000 0.00 0.00 39.67 2.69
3468 3546 3.134458 GGGATCTGCGAACATAGAAAGG 58.866 50.000 0.00 0.00 0.00 3.11
3531 3609 6.074088 CCAGCAACAAAGAATATACTAGCTCG 60.074 42.308 0.00 0.00 0.00 5.03
3547 3625 1.957765 TTGCAGCAAGCCAGCAACAA 61.958 50.000 15.55 1.87 42.71 2.83
3548 3626 1.957765 TTTGCAGCAAGCCAGCAACA 61.958 50.000 18.15 9.79 46.69 3.33
3551 3632 2.418356 GTTTGCAGCAAGCCAGCA 59.582 55.556 10.78 5.79 44.83 4.41
3557 3638 5.376854 AGTATAAACTGGTTTGCAGCAAG 57.623 39.130 8.12 0.00 33.57 4.01
3577 3658 7.661847 GCCTACATGTGCCTTATATTCTAAAGT 59.338 37.037 9.11 0.00 0.00 2.66
3578 3659 7.119846 GGCCTACATGTGCCTTATATTCTAAAG 59.880 40.741 17.72 0.00 44.46 1.85
3579 3660 6.940298 GGCCTACATGTGCCTTATATTCTAAA 59.060 38.462 17.72 0.00 44.46 1.85
3580 3661 6.472887 GGCCTACATGTGCCTTATATTCTAA 58.527 40.000 17.72 0.00 44.46 2.10
3631 3712 0.742281 CCACAATGGAGAGACCGCAG 60.742 60.000 0.00 0.00 40.96 5.18
3665 3746 5.106317 GCCTAAACTATTGCTTTGCTGTACA 60.106 40.000 0.00 0.00 0.00 2.90
3666 3747 5.123979 AGCCTAAACTATTGCTTTGCTGTAC 59.876 40.000 0.00 0.00 0.00 2.90
3668 3749 4.082125 AGCCTAAACTATTGCTTTGCTGT 58.918 39.130 0.00 0.00 0.00 4.40
3669 3750 4.082571 ACAGCCTAAACTATTGCTTTGCTG 60.083 41.667 0.00 0.00 46.70 4.41
3670 3751 4.082125 ACAGCCTAAACTATTGCTTTGCT 58.918 39.130 0.00 0.00 30.08 3.91
3671 3752 4.156739 AGACAGCCTAAACTATTGCTTTGC 59.843 41.667 0.00 0.00 30.08 3.68
3672 3753 5.392380 CCAGACAGCCTAAACTATTGCTTTG 60.392 44.000 0.00 0.00 30.08 2.77
3684 3765 0.178903 ACCAGGTCCAGACAGCCTAA 60.179 55.000 0.00 0.00 0.00 2.69
3739 3851 9.002600 ACATGTACAAGGCACATAATATGTATG 57.997 33.333 5.49 5.68 42.70 2.39
3752 3890 7.182817 AGAGAGTATTTACATGTACAAGGCA 57.817 36.000 4.68 0.00 0.00 4.75
3795 3933 9.868277 TTTCAACAGACTTTGTATCAAACATTT 57.132 25.926 0.00 0.00 39.73 2.32
3796 3934 9.301153 GTTTCAACAGACTTTGTATCAAACATT 57.699 29.630 0.00 0.00 39.73 2.71
3797 3935 8.686334 AGTTTCAACAGACTTTGTATCAAACAT 58.314 29.630 0.00 0.00 39.73 2.71
3806 3944 5.705609 AACACAGTTTCAACAGACTTTGT 57.294 34.783 0.00 0.00 43.45 2.83
3807 3945 5.739161 GCTAACACAGTTTCAACAGACTTTG 59.261 40.000 0.00 0.00 31.60 2.77
3808 3946 5.648092 AGCTAACACAGTTTCAACAGACTTT 59.352 36.000 0.00 0.00 0.00 2.66
3811 3949 4.570772 TCAGCTAACACAGTTTCAACAGAC 59.429 41.667 0.00 0.00 0.00 3.51
3824 3962 8.438676 AGTTGGATTTACATATCAGCTAACAC 57.561 34.615 0.00 0.00 0.00 3.32
3825 3963 9.461312 AAAGTTGGATTTACATATCAGCTAACA 57.539 29.630 0.00 0.00 0.00 2.41
3829 3967 9.071276 CCATAAAGTTGGATTTACATATCAGCT 57.929 33.333 0.00 0.00 39.25 4.24
3830 3968 7.809806 GCCATAAAGTTGGATTTACATATCAGC 59.190 37.037 0.00 0.00 39.25 4.26
3831 3969 9.071276 AGCCATAAAGTTGGATTTACATATCAG 57.929 33.333 0.00 0.00 39.25 2.90
3832 3970 8.995027 AGCCATAAAGTTGGATTTACATATCA 57.005 30.769 0.00 0.00 39.25 2.15
3837 3975 8.402472 CGAATTAGCCATAAAGTTGGATTTACA 58.598 33.333 0.00 0.00 39.25 2.41
3838 3976 8.617809 TCGAATTAGCCATAAAGTTGGATTTAC 58.382 33.333 0.00 0.00 39.25 2.01
3839 3977 8.740123 TCGAATTAGCCATAAAGTTGGATTTA 57.260 30.769 0.00 0.00 39.25 1.40
3840 3978 7.639113 TCGAATTAGCCATAAAGTTGGATTT 57.361 32.000 0.00 0.00 39.25 2.17
3841 3979 7.040409 GGATCGAATTAGCCATAAAGTTGGATT 60.040 37.037 0.00 0.00 39.25 3.01
3842 3980 6.431234 GGATCGAATTAGCCATAAAGTTGGAT 59.569 38.462 0.00 0.00 39.25 3.41
3843 3981 5.763204 GGATCGAATTAGCCATAAAGTTGGA 59.237 40.000 0.00 0.00 39.25 3.53
3844 3982 5.048713 GGGATCGAATTAGCCATAAAGTTGG 60.049 44.000 0.00 0.00 39.94 3.77
3848 3986 6.148480 CAGAAGGGATCGAATTAGCCATAAAG 59.852 42.308 0.00 0.00 0.00 1.85
3851 3989 4.838423 TCAGAAGGGATCGAATTAGCCATA 59.162 41.667 0.00 0.00 0.00 2.74
3883 4021 8.215926 TGAACAAATAGAGAACGAAAGGAAAA 57.784 30.769 0.00 0.00 0.00 2.29
3885 4023 6.990349 ACTGAACAAATAGAGAACGAAAGGAA 59.010 34.615 0.00 0.00 0.00 3.36
3886 4024 6.522054 ACTGAACAAATAGAGAACGAAAGGA 58.478 36.000 0.00 0.00 0.00 3.36
3887 4025 6.647067 AGACTGAACAAATAGAGAACGAAAGG 59.353 38.462 0.00 0.00 0.00 3.11
3888 4026 7.169982 ACAGACTGAACAAATAGAGAACGAAAG 59.830 37.037 10.08 0.00 0.00 2.62
3892 4045 5.388890 GCACAGACTGAACAAATAGAGAACG 60.389 44.000 10.08 0.00 0.00 3.95
3928 4081 8.579006 TGGTTTCTTAGTCGACTTACATTTAGA 58.421 33.333 25.44 11.77 0.00 2.10
3931 4084 8.441312 TTTGGTTTCTTAGTCGACTTACATTT 57.559 30.769 25.44 0.00 0.00 2.32
3936 4090 7.043565 AGTGTTTTGGTTTCTTAGTCGACTTA 58.956 34.615 25.44 14.36 0.00 2.24
3947 4101 3.889538 GAGCCCTTAGTGTTTTGGTTTCT 59.110 43.478 0.00 0.00 0.00 2.52
3948 4102 3.005472 GGAGCCCTTAGTGTTTTGGTTTC 59.995 47.826 0.00 0.00 0.00 2.78
3951 4105 1.780919 AGGAGCCCTTAGTGTTTTGGT 59.219 47.619 0.00 0.00 0.00 3.67
3952 4106 2.586648 AGGAGCCCTTAGTGTTTTGG 57.413 50.000 0.00 0.00 0.00 3.28
3953 4107 3.888930 TCAAAGGAGCCCTTAGTGTTTTG 59.111 43.478 6.88 1.40 43.92 2.44
3956 4110 4.202567 TGAATCAAAGGAGCCCTTAGTGTT 60.203 41.667 6.88 1.79 43.92 3.32
3958 4112 3.955471 TGAATCAAAGGAGCCCTTAGTG 58.045 45.455 6.88 3.80 43.92 2.74
3959 4113 4.657814 TTGAATCAAAGGAGCCCTTAGT 57.342 40.909 6.88 0.00 43.92 2.24
3960 4114 5.573337 CTTTGAATCAAAGGAGCCCTTAG 57.427 43.478 23.96 0.00 43.92 2.18
3971 4125 7.479352 TCCTATGCAATTCCTTTGAATCAAA 57.521 32.000 8.25 8.25 40.34 2.69
3972 4126 7.664552 ATCCTATGCAATTCCTTTGAATCAA 57.335 32.000 0.00 0.00 40.34 2.57
3973 4127 7.664552 AATCCTATGCAATTCCTTTGAATCA 57.335 32.000 0.00 0.00 40.34 2.57
3974 4128 8.953368 AAAATCCTATGCAATTCCTTTGAATC 57.047 30.769 0.00 0.00 40.34 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.