Multiple sequence alignment - TraesCS4A01G081300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G081300 chr4A 100.000 3698 0 0 1 3698 84383336 84379639 0.000000e+00 6830.0
1 TraesCS4A01G081300 chr4A 86.567 67 6 3 354 418 614247479 614247414 1.840000e-08 71.3
2 TraesCS4A01G081300 chr4D 95.429 1925 81 3 958 2876 380141901 380143824 0.000000e+00 3061.0
3 TraesCS4A01G081300 chr4D 90.637 502 34 6 3198 3698 380145098 380145587 0.000000e+00 654.0
4 TraesCS4A01G081300 chr4D 91.954 435 24 7 1 428 380141169 380141599 1.900000e-167 599.0
5 TraesCS4A01G081300 chr4D 86.275 510 58 9 3194 3698 37041956 37042458 9.030000e-151 544.0
6 TraesCS4A01G081300 chr4D 90.837 251 14 5 2960 3203 380143822 380144070 9.900000e-86 327.0
7 TraesCS4A01G081300 chr4D 97.872 47 1 0 560 606 380141704 380141750 8.510000e-12 82.4
8 TraesCS4A01G081300 chr4D 82.105 95 14 2 2868 2962 204732200 204732109 1.100000e-10 78.7
9 TraesCS4A01G081300 chr4B 94.737 1919 92 3 967 2876 467100717 467102635 0.000000e+00 2976.0
10 TraesCS4A01G081300 chr4B 92.829 502 33 3 3198 3697 467103786 467104286 0.000000e+00 725.0
11 TraesCS4A01G081300 chr4B 92.457 411 28 3 1 409 467099972 467100381 5.320000e-163 584.0
12 TraesCS4A01G081300 chr4B 86.471 510 58 8 3194 3698 54029505 54030008 1.940000e-152 549.0
13 TraesCS4A01G081300 chr4B 91.124 169 13 2 2960 3128 467102633 467102799 1.030000e-55 228.0
14 TraesCS4A01G081300 chr4B 92.222 90 3 3 765 854 467100644 467100729 1.390000e-24 124.0
15 TraesCS4A01G081300 chr4B 97.872 47 1 0 560 606 467100489 467100535 8.510000e-12 82.4
16 TraesCS4A01G081300 chr4B 100.000 32 0 0 715 746 467100541 467100572 3.990000e-05 60.2
17 TraesCS4A01G081300 chr4B 92.105 38 3 0 2870 2907 193995249 193995212 2.000000e-03 54.7
18 TraesCS4A01G081300 chr7B 89.087 504 49 5 3198 3697 604795695 604795194 4.060000e-174 621.0
19 TraesCS4A01G081300 chr1D 84.241 514 65 11 3198 3698 233337295 233336785 1.540000e-133 486.0
20 TraesCS4A01G081300 chr1D 88.732 71 6 1 2875 2945 464299310 464299242 6.580000e-13 86.1
21 TraesCS4A01G081300 chr1B 87.571 177 20 2 3212 3387 632766580 632766405 1.740000e-48 204.0
22 TraesCS4A01G081300 chr7D 97.414 116 3 0 606 721 412395367 412395482 8.100000e-47 198.0
23 TraesCS4A01G081300 chrUn 97.273 110 3 0 850 959 329904439 329904330 1.750000e-43 187.0
24 TraesCS4A01G081300 chrUn 98.131 107 2 0 850 956 469987615 469987721 1.750000e-43 187.0
25 TraesCS4A01G081300 chrUn 81.522 92 8 8 2871 2962 48418269 48418187 2.380000e-07 67.6
26 TraesCS4A01G081300 chr1A 97.273 110 3 0 606 715 498433896 498434005 1.750000e-43 187.0
27 TraesCS4A01G081300 chr7A 97.248 109 3 0 851 959 734351583 734351475 6.310000e-43 185.0
28 TraesCS4A01G081300 chr3D 98.113 106 2 0 851 956 302270407 302270512 6.310000e-43 185.0
29 TraesCS4A01G081300 chr3D 84.615 91 8 4 2875 2963 137132561 137132475 6.580000e-13 86.1
30 TraesCS4A01G081300 chr2B 98.113 106 2 0 851 956 446110744 446110849 6.310000e-43 185.0
31 TraesCS4A01G081300 chr2B 97.248 109 3 0 851 959 660118874 660118766 6.310000e-43 185.0
32 TraesCS4A01G081300 chr2B 97.170 106 3 0 851 956 570121633 570121738 2.930000e-41 180.0
33 TraesCS4A01G081300 chr2B 95.000 40 2 0 373 412 596932077 596932116 3.080000e-06 63.9
34 TraesCS4A01G081300 chr2A 98.113 106 2 0 851 956 79160661 79160766 6.310000e-43 185.0
35 TraesCS4A01G081300 chr2A 97.248 109 3 0 851 959 164706075 164705967 6.310000e-43 185.0
36 TraesCS4A01G081300 chr2A 81.193 218 32 8 3220 3431 333755455 333755669 2.280000e-37 167.0
37 TraesCS4A01G081300 chr5D 96.330 109 4 0 606 714 526698979 526699087 2.930000e-41 180.0
38 TraesCS4A01G081300 chr2D 81.279 219 31 9 3220 3431 284536722 284536507 6.350000e-38 169.0
39 TraesCS4A01G081300 chr2D 91.176 102 8 1 615 716 22952799 22952699 1.790000e-28 137.0
40 TraesCS4A01G081300 chr5A 82.424 165 21 7 2960 3122 443732285 443732443 1.790000e-28 137.0
41 TraesCS4A01G081300 chr5A 82.249 169 17 12 2960 3127 443733002 443733158 2.320000e-27 134.0
42 TraesCS4A01G081300 chr5A 85.859 99 8 6 2975 3071 581490377 581490471 2.350000e-17 100.0
43 TraesCS4A01G081300 chr5B 81.098 164 19 8 2960 3122 402746203 402746355 1.800000e-23 121.0
44 TraesCS4A01G081300 chr5B 78.322 143 14 10 2960 3100 402745861 402745988 3.960000e-10 76.8
45 TraesCS4A01G081300 chr3B 93.220 59 3 1 606 664 22483404 22483347 6.580000e-13 86.1
46 TraesCS4A01G081300 chr6B 87.719 57 5 2 363 418 118889973 118889918 8.570000e-07 65.8
47 TraesCS4A01G081300 chr6B 94.595 37 2 0 2870 2906 652642754 652642718 1.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G081300 chr4A 84379639 84383336 3697 True 6830.00 6830 100.0000 1 3698 1 chr4A.!!$R1 3697
1 TraesCS4A01G081300 chr4D 380141169 380145587 4418 False 944.68 3061 93.3458 1 3698 5 chr4D.!!$F2 3697
2 TraesCS4A01G081300 chr4D 37041956 37042458 502 False 544.00 544 86.2750 3194 3698 1 chr4D.!!$F1 504
3 TraesCS4A01G081300 chr4B 467099972 467104286 4314 False 682.80 2976 94.4630 1 3697 7 chr4B.!!$F2 3696
4 TraesCS4A01G081300 chr4B 54029505 54030008 503 False 549.00 549 86.4710 3194 3698 1 chr4B.!!$F1 504
5 TraesCS4A01G081300 chr7B 604795194 604795695 501 True 621.00 621 89.0870 3198 3697 1 chr7B.!!$R1 499
6 TraesCS4A01G081300 chr1D 233336785 233337295 510 True 486.00 486 84.2410 3198 3698 1 chr1D.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.033090 GGTCAACGACTCGAACCCTT 59.967 55.0 5.20 0.0 32.47 3.95 F
886 972 0.108329 CGACACTGGGTAGCCGATTT 60.108 55.0 6.45 0.0 0.00 2.17 F
939 1025 0.178992 TTGGACAAAGTGGAGGCCAG 60.179 55.0 5.01 0.0 32.34 4.85 F
951 1037 0.530870 GAGGCCAGCGGTTAGATCAC 60.531 60.0 5.01 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 2001 0.040204 ACCTTGGGCTCCATTTCCAG 59.960 55.0 0.0 0.0 31.53 3.86 R
1917 2006 0.107017 CATCGACCTTGGGCTCCATT 60.107 55.0 0.0 0.0 31.53 3.16 R
2569 2658 0.178967 TCTGCCTTCACCATTGCCAA 60.179 50.0 0.0 0.0 0.00 4.52 R
2706 2795 0.310854 GAAGGAACACAAACCTGCGG 59.689 55.0 0.0 0.0 36.56 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.033090 GGTCAACGACTCGAACCCTT 59.967 55.000 5.20 0.00 32.47 3.95
58 59 3.684908 TGCTTATGTCCAGCTTTAGCAA 58.315 40.909 4.33 0.00 45.16 3.91
160 161 0.303493 GTGAACGCGCTTTGAGAACA 59.697 50.000 5.73 0.00 0.00 3.18
205 206 1.550524 AGCTAGTCGAGTTGCCATGAA 59.449 47.619 20.70 0.00 0.00 2.57
217 219 5.310451 AGTTGCCATGAATTTTGCAGAATT 58.690 33.333 14.55 14.55 34.81 2.17
222 224 5.859648 GCCATGAATTTTGCAGAATTTTTGG 59.140 36.000 25.19 25.19 36.00 3.28
240 242 1.064463 TGGGAAAGCATGGATGAGACC 60.064 52.381 0.00 0.00 0.00 3.85
269 271 3.876914 GCGGAAATGTGATATGTCCTCAA 59.123 43.478 0.00 0.00 0.00 3.02
369 374 4.332819 GGAGTTCACTTATCACGAAATGGG 59.667 45.833 0.00 0.00 0.00 4.00
370 375 5.160607 AGTTCACTTATCACGAAATGGGA 57.839 39.130 0.00 0.00 0.00 4.37
371 376 5.745227 AGTTCACTTATCACGAAATGGGAT 58.255 37.500 0.00 0.00 0.00 3.85
391 396 9.822185 ATGGGATAAAAAGAATGCATTTAGAAC 57.178 29.630 14.33 0.00 0.00 3.01
443 448 8.744568 ATTTTCACAATTATTCCCTCTCTCTC 57.255 34.615 0.00 0.00 0.00 3.20
444 449 6.874278 TTCACAATTATTCCCTCTCTCTCA 57.126 37.500 0.00 0.00 0.00 3.27
445 450 7.443302 TTCACAATTATTCCCTCTCTCTCAT 57.557 36.000 0.00 0.00 0.00 2.90
446 451 8.553085 TTCACAATTATTCCCTCTCTCTCATA 57.447 34.615 0.00 0.00 0.00 2.15
447 452 8.553085 TCACAATTATTCCCTCTCTCTCATAA 57.447 34.615 0.00 0.00 0.00 1.90
448 453 9.163894 TCACAATTATTCCCTCTCTCTCATAAT 57.836 33.333 0.00 0.00 0.00 1.28
456 461 8.588290 TTCCCTCTCTCTCATAATATAAGAGC 57.412 38.462 0.00 0.00 37.14 4.09
457 462 6.826231 TCCCTCTCTCTCATAATATAAGAGCG 59.174 42.308 0.00 0.00 37.14 5.03
458 463 6.601613 CCCTCTCTCTCATAATATAAGAGCGT 59.398 42.308 0.00 0.00 37.14 5.07
459 464 7.122055 CCCTCTCTCTCATAATATAAGAGCGTT 59.878 40.741 0.00 0.00 37.14 4.84
460 465 8.519526 CCTCTCTCTCATAATATAAGAGCGTTT 58.480 37.037 0.00 0.00 37.14 3.60
461 466 9.906660 CTCTCTCTCATAATATAAGAGCGTTTT 57.093 33.333 0.00 0.00 37.14 2.43
483 488 3.849563 TTACATTTATGGGACGGAGGG 57.150 47.619 0.00 0.00 0.00 4.30
492 497 1.835531 TGGGACGGAGGGAGTATTTTC 59.164 52.381 0.00 0.00 0.00 2.29
497 502 2.093816 ACGGAGGGAGTATTTTCGAACC 60.094 50.000 0.00 0.00 0.00 3.62
553 559 4.336433 CGATGTGATGGAGCAATTTTAGGT 59.664 41.667 0.00 0.00 0.00 3.08
595 630 1.815421 GCCTGTCGAATCATGGCGT 60.815 57.895 0.00 0.00 33.96 5.68
606 641 1.083806 TCATGGCGTGCTAAGCTTCG 61.084 55.000 0.00 0.67 34.52 3.79
609 644 1.736645 GGCGTGCTAAGCTTCGACA 60.737 57.895 0.00 0.00 35.63 4.35
610 645 1.416434 GCGTGCTAAGCTTCGACAC 59.584 57.895 0.00 9.24 0.00 3.67
611 646 1.009389 GCGTGCTAAGCTTCGACACT 61.009 55.000 18.62 0.00 0.00 3.55
612 647 0.710567 CGTGCTAAGCTTCGACACTG 59.289 55.000 18.62 11.52 0.00 3.66
613 648 1.784525 GTGCTAAGCTTCGACACTGT 58.215 50.000 0.00 0.00 0.00 3.55
614 649 2.135933 GTGCTAAGCTTCGACACTGTT 58.864 47.619 0.00 0.00 0.00 3.16
615 650 3.314553 GTGCTAAGCTTCGACACTGTTA 58.685 45.455 0.00 0.00 0.00 2.41
616 651 3.739300 GTGCTAAGCTTCGACACTGTTAA 59.261 43.478 0.00 0.00 0.00 2.01
617 652 4.389077 GTGCTAAGCTTCGACACTGTTAAT 59.611 41.667 0.00 0.00 0.00 1.40
618 653 4.625742 TGCTAAGCTTCGACACTGTTAATC 59.374 41.667 0.00 0.00 0.00 1.75
619 654 4.625742 GCTAAGCTTCGACACTGTTAATCA 59.374 41.667 0.00 0.00 0.00 2.57
620 655 5.120208 GCTAAGCTTCGACACTGTTAATCAA 59.880 40.000 0.00 0.00 0.00 2.57
621 656 5.597813 AAGCTTCGACACTGTTAATCAAG 57.402 39.130 0.00 0.00 0.00 3.02
622 657 3.433615 AGCTTCGACACTGTTAATCAAGC 59.566 43.478 0.00 0.00 0.00 4.01
623 658 3.424962 GCTTCGACACTGTTAATCAAGCC 60.425 47.826 0.00 0.00 0.00 4.35
624 659 2.333926 TCGACACTGTTAATCAAGCCG 58.666 47.619 0.00 0.00 0.00 5.52
625 660 2.066262 CGACACTGTTAATCAAGCCGT 58.934 47.619 0.00 0.00 0.00 5.68
626 661 2.478894 CGACACTGTTAATCAAGCCGTT 59.521 45.455 0.00 0.00 0.00 4.44
627 662 3.664276 CGACACTGTTAATCAAGCCGTTG 60.664 47.826 0.00 0.00 34.67 4.10
628 663 2.552315 ACACTGTTAATCAAGCCGTTGG 59.448 45.455 0.00 0.00 34.09 3.77
629 664 2.552315 CACTGTTAATCAAGCCGTTGGT 59.448 45.455 0.00 0.00 34.09 3.67
630 665 2.552315 ACTGTTAATCAAGCCGTTGGTG 59.448 45.455 0.00 0.00 34.09 4.17
631 666 1.268352 TGTTAATCAAGCCGTTGGTGC 59.732 47.619 0.00 0.00 34.09 5.01
632 667 1.539827 GTTAATCAAGCCGTTGGTGCT 59.460 47.619 0.00 0.00 41.89 4.40
633 668 2.745281 GTTAATCAAGCCGTTGGTGCTA 59.255 45.455 0.00 0.00 38.34 3.49
634 669 1.453155 AATCAAGCCGTTGGTGCTAG 58.547 50.000 0.00 0.00 38.34 3.42
635 670 0.613260 ATCAAGCCGTTGGTGCTAGA 59.387 50.000 0.00 0.00 38.34 2.43
636 671 0.394938 TCAAGCCGTTGGTGCTAGAA 59.605 50.000 0.00 0.00 38.34 2.10
637 672 1.202710 TCAAGCCGTTGGTGCTAGAAA 60.203 47.619 0.00 0.00 38.34 2.52
638 673 1.197721 CAAGCCGTTGGTGCTAGAAAG 59.802 52.381 0.00 0.00 38.34 2.62
655 690 5.597813 AGAAAGCAAACTTCAGTACATCG 57.402 39.130 0.00 0.00 34.05 3.84
656 691 5.057149 AGAAAGCAAACTTCAGTACATCGT 58.943 37.500 0.00 0.00 34.05 3.73
657 692 4.992381 AAGCAAACTTCAGTACATCGTC 57.008 40.909 0.00 0.00 0.00 4.20
658 693 3.990092 AGCAAACTTCAGTACATCGTCA 58.010 40.909 0.00 0.00 0.00 4.35
659 694 3.990469 AGCAAACTTCAGTACATCGTCAG 59.010 43.478 0.00 0.00 0.00 3.51
660 695 3.987868 GCAAACTTCAGTACATCGTCAGA 59.012 43.478 0.00 0.00 0.00 3.27
661 696 4.627467 GCAAACTTCAGTACATCGTCAGAT 59.373 41.667 0.00 0.00 37.65 2.90
662 697 5.120830 GCAAACTTCAGTACATCGTCAGATT 59.879 40.000 0.00 0.00 34.23 2.40
663 698 6.347725 GCAAACTTCAGTACATCGTCAGATTT 60.348 38.462 0.00 0.00 34.23 2.17
664 699 7.576236 CAAACTTCAGTACATCGTCAGATTTT 58.424 34.615 0.00 0.00 34.23 1.82
665 700 6.712241 ACTTCAGTACATCGTCAGATTTTG 57.288 37.500 0.00 0.00 34.23 2.44
666 701 5.120830 ACTTCAGTACATCGTCAGATTTTGC 59.879 40.000 0.00 0.00 34.23 3.68
667 702 4.565022 TCAGTACATCGTCAGATTTTGCA 58.435 39.130 0.00 0.00 34.23 4.08
668 703 5.178061 TCAGTACATCGTCAGATTTTGCAT 58.822 37.500 0.00 0.00 34.23 3.96
669 704 5.291858 TCAGTACATCGTCAGATTTTGCATC 59.708 40.000 0.00 0.00 34.23 3.91
670 705 3.663464 ACATCGTCAGATTTTGCATCG 57.337 42.857 0.00 0.00 34.23 3.84
671 706 3.002791 ACATCGTCAGATTTTGCATCGT 58.997 40.909 0.00 0.00 34.23 3.73
672 707 3.062639 ACATCGTCAGATTTTGCATCGTC 59.937 43.478 0.00 0.00 34.23 4.20
673 708 1.999735 TCGTCAGATTTTGCATCGTCC 59.000 47.619 0.00 0.00 0.00 4.79
674 709 1.062587 CGTCAGATTTTGCATCGTCCC 59.937 52.381 0.00 0.00 0.00 4.46
675 710 2.359900 GTCAGATTTTGCATCGTCCCT 58.640 47.619 0.00 0.00 0.00 4.20
676 711 2.096496 GTCAGATTTTGCATCGTCCCTG 59.904 50.000 0.00 0.00 0.00 4.45
677 712 2.027285 TCAGATTTTGCATCGTCCCTGA 60.027 45.455 0.00 0.00 0.00 3.86
678 713 2.749076 CAGATTTTGCATCGTCCCTGAA 59.251 45.455 0.00 0.00 0.00 3.02
679 714 3.379372 CAGATTTTGCATCGTCCCTGAAT 59.621 43.478 0.00 0.00 0.00 2.57
680 715 3.629398 AGATTTTGCATCGTCCCTGAATC 59.371 43.478 0.00 0.00 0.00 2.52
681 716 1.368641 TTTGCATCGTCCCTGAATCG 58.631 50.000 0.00 0.00 0.00 3.34
682 717 0.461870 TTGCATCGTCCCTGAATCGG 60.462 55.000 0.00 0.00 0.00 4.18
683 718 2.247437 GCATCGTCCCTGAATCGGC 61.247 63.158 0.00 0.00 0.00 5.54
684 719 1.595382 CATCGTCCCTGAATCGGCC 60.595 63.158 0.00 0.00 0.00 6.13
685 720 2.063979 ATCGTCCCTGAATCGGCCA 61.064 57.895 2.24 0.00 0.00 5.36
686 721 2.311688 ATCGTCCCTGAATCGGCCAC 62.312 60.000 2.24 0.00 0.00 5.01
687 722 2.511600 GTCCCTGAATCGGCCACG 60.512 66.667 2.24 0.00 42.74 4.94
688 723 4.467084 TCCCTGAATCGGCCACGC 62.467 66.667 2.24 0.00 40.69 5.34
689 724 4.776322 CCCTGAATCGGCCACGCA 62.776 66.667 2.24 0.00 40.69 5.24
690 725 2.514592 CCTGAATCGGCCACGCAT 60.515 61.111 2.24 0.00 40.69 4.73
691 726 2.537560 CCTGAATCGGCCACGCATC 61.538 63.158 2.24 0.00 40.69 3.91
692 727 1.522355 CTGAATCGGCCACGCATCT 60.522 57.895 2.24 0.00 40.69 2.90
693 728 1.769098 CTGAATCGGCCACGCATCTG 61.769 60.000 2.24 0.00 40.69 2.90
694 729 1.815421 GAATCGGCCACGCATCTGT 60.815 57.895 2.24 0.00 40.69 3.41
695 730 1.766143 GAATCGGCCACGCATCTGTC 61.766 60.000 2.24 0.00 40.69 3.51
696 731 4.794439 TCGGCCACGCATCTGTCG 62.794 66.667 2.24 0.00 40.69 4.35
698 733 2.742372 GGCCACGCATCTGTCGTT 60.742 61.111 0.00 0.00 38.19 3.85
699 734 2.740714 GGCCACGCATCTGTCGTTC 61.741 63.158 0.00 0.00 38.19 3.95
700 735 3.071459 GCCACGCATCTGTCGTTCG 62.071 63.158 0.00 0.00 38.19 3.95
701 736 2.391821 CACGCATCTGTCGTTCGC 59.608 61.111 0.00 0.00 38.19 4.70
702 737 2.049526 ACGCATCTGTCGTTCGCA 60.050 55.556 0.00 0.00 36.72 5.10
703 738 1.663388 ACGCATCTGTCGTTCGCAA 60.663 52.632 0.00 0.00 36.72 4.85
704 739 1.218875 ACGCATCTGTCGTTCGCAAA 61.219 50.000 0.00 0.00 36.72 3.68
705 740 0.517132 CGCATCTGTCGTTCGCAAAG 60.517 55.000 0.00 0.00 0.00 2.77
706 741 0.512952 GCATCTGTCGTTCGCAAAGT 59.487 50.000 0.00 0.00 0.00 2.66
707 742 1.724623 GCATCTGTCGTTCGCAAAGTA 59.275 47.619 0.00 0.00 0.00 2.24
708 743 2.222596 GCATCTGTCGTTCGCAAAGTAG 60.223 50.000 0.00 0.00 0.00 2.57
709 744 2.787601 TCTGTCGTTCGCAAAGTAGT 57.212 45.000 0.00 0.00 0.00 2.73
710 745 3.088194 TCTGTCGTTCGCAAAGTAGTT 57.912 42.857 0.00 0.00 0.00 2.24
711 746 3.450578 TCTGTCGTTCGCAAAGTAGTTT 58.549 40.909 0.00 0.00 0.00 2.66
712 747 3.488310 TCTGTCGTTCGCAAAGTAGTTTC 59.512 43.478 0.00 0.00 0.00 2.78
713 748 2.216940 TGTCGTTCGCAAAGTAGTTTCG 59.783 45.455 0.00 1.19 0.00 3.46
749 833 2.037772 GACTTCAGTCACCTGTCACCAT 59.962 50.000 1.86 0.00 44.18 3.55
752 836 1.620323 TCAGTCACCTGTCACCATCAG 59.380 52.381 0.00 0.00 39.82 2.90
754 838 1.016130 GTCACCTGTCACCATCAGCG 61.016 60.000 0.00 0.00 0.00 5.18
756 840 1.004560 ACCTGTCACCATCAGCGTG 60.005 57.895 0.00 0.00 0.00 5.34
758 842 0.738762 CCTGTCACCATCAGCGTGAG 60.739 60.000 0.00 0.00 40.79 3.51
776 862 2.283966 CGTGAGGGGAGTCCACCT 60.284 66.667 16.65 16.65 40.54 4.00
777 863 1.000019 CGTGAGGGGAGTCCACCTA 60.000 63.158 16.66 0.35 37.18 3.08
794 880 5.371176 TCCACCTATACCATATTCAAAGCCA 59.629 40.000 0.00 0.00 0.00 4.75
818 904 6.472686 ACTAGAACACCTTGATCCTATCAC 57.527 41.667 0.00 0.00 39.39 3.06
855 941 2.061220 TGCTTAGGCAGAGCAGTGT 58.939 52.632 10.25 0.00 44.63 3.55
856 942 0.397941 TGCTTAGGCAGAGCAGTGTT 59.602 50.000 10.25 0.00 44.63 3.32
857 943 0.801251 GCTTAGGCAGAGCAGTGTTG 59.199 55.000 7.17 0.00 39.89 3.33
858 944 3.131383 GCTTAGGCAGAGCAGTGTTGC 62.131 57.143 7.17 7.58 43.61 4.17
872 958 3.700130 GTGTTGCTATACACACGACAC 57.300 47.619 10.93 0.00 46.00 3.67
873 959 3.314553 GTGTTGCTATACACACGACACT 58.685 45.455 10.93 0.00 46.00 3.55
874 960 3.121279 GTGTTGCTATACACACGACACTG 59.879 47.826 10.93 0.00 46.00 3.66
875 961 2.647529 TGCTATACACACGACACTGG 57.352 50.000 0.00 0.00 0.00 4.00
876 962 1.203758 TGCTATACACACGACACTGGG 59.796 52.381 0.00 0.00 0.00 4.45
877 963 1.203994 GCTATACACACGACACTGGGT 59.796 52.381 0.00 0.00 0.00 4.51
878 964 2.424601 GCTATACACACGACACTGGGTA 59.575 50.000 0.00 0.00 34.50 3.69
879 965 3.488721 GCTATACACACGACACTGGGTAG 60.489 52.174 0.00 0.00 33.48 3.18
880 966 0.599558 TACACACGACACTGGGTAGC 59.400 55.000 0.00 0.00 0.00 3.58
881 967 1.374252 CACACGACACTGGGTAGCC 60.374 63.158 3.29 3.29 0.00 3.93
882 968 2.126071 CACGACACTGGGTAGCCG 60.126 66.667 6.45 3.90 0.00 5.52
883 969 2.282674 ACGACACTGGGTAGCCGA 60.283 61.111 6.45 0.00 0.00 5.54
884 970 1.681327 ACGACACTGGGTAGCCGAT 60.681 57.895 6.45 0.00 0.00 4.18
885 971 1.255667 ACGACACTGGGTAGCCGATT 61.256 55.000 6.45 0.00 0.00 3.34
886 972 0.108329 CGACACTGGGTAGCCGATTT 60.108 55.000 6.45 0.00 0.00 2.17
887 973 1.369625 GACACTGGGTAGCCGATTTG 58.630 55.000 6.45 3.11 0.00 2.32
888 974 0.676782 ACACTGGGTAGCCGATTTGC 60.677 55.000 6.45 0.00 0.00 3.68
889 975 1.449601 ACTGGGTAGCCGATTTGCG 60.450 57.895 6.45 0.00 40.47 4.85
890 976 2.822255 TGGGTAGCCGATTTGCGC 60.822 61.111 6.45 0.00 39.11 6.09
891 977 2.822255 GGGTAGCCGATTTGCGCA 60.822 61.111 5.66 5.66 39.11 6.09
892 978 2.186826 GGGTAGCCGATTTGCGCAT 61.187 57.895 12.75 0.00 39.11 4.73
893 979 1.009675 GGTAGCCGATTTGCGCATG 60.010 57.895 12.75 1.11 39.11 4.06
894 980 1.436195 GGTAGCCGATTTGCGCATGA 61.436 55.000 12.75 3.07 39.11 3.07
895 981 0.588252 GTAGCCGATTTGCGCATGAT 59.412 50.000 12.75 8.96 39.11 2.45
896 982 0.867746 TAGCCGATTTGCGCATGATC 59.132 50.000 12.75 16.94 39.11 2.92
897 983 1.723542 GCCGATTTGCGCATGATCG 60.724 57.895 32.56 32.56 41.57 3.69
910 996 2.663188 GATCGCACTGATCCGGCC 60.663 66.667 0.00 0.00 46.55 6.13
911 997 4.592192 ATCGCACTGATCCGGCCG 62.592 66.667 21.04 21.04 28.49 6.13
915 1001 4.758251 CACTGATCCGGCCGTGCA 62.758 66.667 26.12 17.29 0.00 4.57
916 1002 3.785859 ACTGATCCGGCCGTGCAT 61.786 61.111 26.12 12.99 0.00 3.96
917 1003 3.274586 CTGATCCGGCCGTGCATG 61.275 66.667 26.12 8.39 0.00 4.06
918 1004 4.094646 TGATCCGGCCGTGCATGT 62.095 61.111 26.12 2.38 0.00 3.21
919 1005 3.576356 GATCCGGCCGTGCATGTG 61.576 66.667 26.12 6.69 0.00 3.21
920 1006 4.408821 ATCCGGCCGTGCATGTGT 62.409 61.111 26.12 0.00 0.00 3.72
921 1007 3.918253 ATCCGGCCGTGCATGTGTT 62.918 57.895 26.12 0.00 0.00 3.32
922 1008 4.403137 CCGGCCGTGCATGTGTTG 62.403 66.667 26.12 0.00 0.00 3.33
923 1009 4.403137 CGGCCGTGCATGTGTTGG 62.403 66.667 19.50 0.00 0.00 3.77
924 1010 2.983030 GGCCGTGCATGTGTTGGA 60.983 61.111 4.96 0.00 0.00 3.53
925 1011 2.255252 GCCGTGCATGTGTTGGAC 59.745 61.111 4.96 0.00 42.80 4.02
926 1012 2.551006 GCCGTGCATGTGTTGGACA 61.551 57.895 4.96 0.00 46.27 4.02
927 1013 2.028936 CCGTGCATGTGTTGGACAA 58.971 52.632 4.96 0.00 46.27 3.18
928 1014 0.383590 CCGTGCATGTGTTGGACAAA 59.616 50.000 4.96 0.00 46.27 2.83
929 1015 1.600164 CCGTGCATGTGTTGGACAAAG 60.600 52.381 4.96 0.00 46.27 2.77
930 1016 1.065401 CGTGCATGTGTTGGACAAAGT 59.935 47.619 0.00 0.00 46.27 2.66
931 1017 2.462889 GTGCATGTGTTGGACAAAGTG 58.537 47.619 0.00 0.00 45.35 3.16
932 1018 1.408340 TGCATGTGTTGGACAAAGTGG 59.592 47.619 0.00 0.00 38.36 4.00
933 1019 1.680735 GCATGTGTTGGACAAAGTGGA 59.319 47.619 0.00 0.00 38.36 4.02
934 1020 2.287788 GCATGTGTTGGACAAAGTGGAG 60.288 50.000 0.00 0.00 38.36 3.86
935 1021 2.051334 TGTGTTGGACAAAGTGGAGG 57.949 50.000 0.00 0.00 0.00 4.30
936 1022 0.668535 GTGTTGGACAAAGTGGAGGC 59.331 55.000 0.00 0.00 0.00 4.70
937 1023 0.467290 TGTTGGACAAAGTGGAGGCC 60.467 55.000 0.00 0.00 0.00 5.19
938 1024 0.467290 GTTGGACAAAGTGGAGGCCA 60.467 55.000 5.01 0.00 0.00 5.36
939 1025 0.178992 TTGGACAAAGTGGAGGCCAG 60.179 55.000 5.01 0.00 32.34 4.85
940 1026 1.973812 GGACAAAGTGGAGGCCAGC 60.974 63.158 5.01 0.00 32.34 4.85
941 1027 2.281761 ACAAAGTGGAGGCCAGCG 60.282 61.111 5.01 0.00 32.34 5.18
942 1028 3.058160 CAAAGTGGAGGCCAGCGG 61.058 66.667 5.01 0.00 32.34 5.52
943 1029 3.570212 AAAGTGGAGGCCAGCGGT 61.570 61.111 5.01 0.00 32.34 5.68
944 1030 3.133365 AAAGTGGAGGCCAGCGGTT 62.133 57.895 5.01 0.00 32.34 4.44
945 1031 1.774894 AAAGTGGAGGCCAGCGGTTA 61.775 55.000 5.01 0.00 32.34 2.85
946 1032 2.125106 GTGGAGGCCAGCGGTTAG 60.125 66.667 5.01 0.00 32.34 2.34
947 1033 2.284331 TGGAGGCCAGCGGTTAGA 60.284 61.111 5.01 0.00 0.00 2.10
948 1034 1.689233 TGGAGGCCAGCGGTTAGAT 60.689 57.895 5.01 0.00 0.00 1.98
949 1035 1.069935 GGAGGCCAGCGGTTAGATC 59.930 63.158 5.01 0.00 0.00 2.75
950 1036 1.686325 GGAGGCCAGCGGTTAGATCA 61.686 60.000 5.01 0.00 0.00 2.92
951 1037 0.530870 GAGGCCAGCGGTTAGATCAC 60.531 60.000 5.01 0.00 0.00 3.06
952 1038 1.883084 GGCCAGCGGTTAGATCACG 60.883 63.158 0.00 0.00 0.00 4.35
961 1047 4.485024 CGGTTAGATCACGCATAGTAGT 57.515 45.455 0.00 0.00 0.00 2.73
962 1048 4.856664 CGGTTAGATCACGCATAGTAGTT 58.143 43.478 0.00 0.00 0.00 2.24
963 1049 5.279384 CGGTTAGATCACGCATAGTAGTTT 58.721 41.667 0.00 0.00 0.00 2.66
964 1050 5.398711 CGGTTAGATCACGCATAGTAGTTTC 59.601 44.000 0.00 0.00 0.00 2.78
965 1051 5.398711 GGTTAGATCACGCATAGTAGTTTCG 59.601 44.000 0.00 0.00 0.00 3.46
966 1052 4.634184 AGATCACGCATAGTAGTTTCGT 57.366 40.909 0.00 0.00 0.00 3.85
967 1053 5.746307 AGATCACGCATAGTAGTTTCGTA 57.254 39.130 0.00 0.00 0.00 3.43
968 1054 5.749620 AGATCACGCATAGTAGTTTCGTAG 58.250 41.667 0.00 0.00 0.00 3.51
969 1055 4.282950 TCACGCATAGTAGTTTCGTAGG 57.717 45.455 0.00 0.00 0.00 3.18
970 1056 2.787680 CACGCATAGTAGTTTCGTAGGC 59.212 50.000 0.00 0.00 0.00 3.93
971 1057 2.424601 ACGCATAGTAGTTTCGTAGGCA 59.575 45.455 0.00 0.00 0.00 4.75
972 1058 3.043586 CGCATAGTAGTTTCGTAGGCAG 58.956 50.000 0.00 0.00 0.00 4.85
973 1059 3.242969 CGCATAGTAGTTTCGTAGGCAGA 60.243 47.826 0.00 0.00 0.00 4.26
974 1060 4.291783 GCATAGTAGTTTCGTAGGCAGAG 58.708 47.826 0.00 0.00 0.00 3.35
975 1061 2.943449 AGTAGTTTCGTAGGCAGAGC 57.057 50.000 0.00 0.00 0.00 4.09
976 1062 2.168496 AGTAGTTTCGTAGGCAGAGCA 58.832 47.619 0.00 0.00 0.00 4.26
977 1063 2.561419 AGTAGTTTCGTAGGCAGAGCAA 59.439 45.455 0.00 0.00 0.00 3.91
978 1064 2.086054 AGTTTCGTAGGCAGAGCAAG 57.914 50.000 0.00 0.00 0.00 4.01
1013 1099 1.369091 AAGACGATGCGGCCATTCAC 61.369 55.000 2.24 0.00 34.11 3.18
1014 1100 3.155470 GACGATGCGGCCATTCACG 62.155 63.158 2.24 4.08 0.00 4.35
1022 1108 2.456119 GGCCATTCACGCGTCTCTG 61.456 63.158 9.86 6.63 0.00 3.35
1026 1112 1.078759 CATTCACGCGTCTCTGTCCC 61.079 60.000 9.86 0.00 0.00 4.46
1088 1177 1.277557 GCAGGAGCTCCAAGAAGAAGA 59.722 52.381 33.90 0.00 38.89 2.87
1131 1220 3.041940 CGTTGTGTGTCCCGCCTC 61.042 66.667 0.00 0.00 0.00 4.70
1368 1457 1.674441 CACGACTACGAAGGCCTATCA 59.326 52.381 5.16 0.00 42.66 2.15
1371 1460 4.156190 CACGACTACGAAGGCCTATCATAT 59.844 45.833 5.16 0.00 42.66 1.78
1623 1712 1.009675 GATGCGCAAATACGGCCTG 60.010 57.895 17.11 0.00 0.00 4.85
1839 1928 1.517257 GCATGGTGACGAGGACGAG 60.517 63.158 0.00 0.00 42.66 4.18
1905 1994 1.457009 CCCTCCCGGACGATCTCTTC 61.457 65.000 0.73 0.00 0.00 2.87
1916 2005 1.133216 CGATCTCTTCGTCAAGCTGGA 59.867 52.381 0.00 0.00 43.01 3.86
1917 2006 2.416027 CGATCTCTTCGTCAAGCTGGAA 60.416 50.000 0.00 0.00 43.01 3.53
1975 2064 2.892852 CCATTGGTGGTGTTCAAGTCAT 59.107 45.455 0.00 0.00 40.83 3.06
1977 2066 4.549458 CATTGGTGGTGTTCAAGTCATTC 58.451 43.478 0.00 0.00 0.00 2.67
2002 2091 2.105528 GCAATTGCAGCGGGATGG 59.894 61.111 25.36 0.00 41.59 3.51
2067 2156 2.548875 AGCGATTGCAGAGAGATGAAC 58.451 47.619 7.90 0.00 46.23 3.18
2154 2243 3.287222 CAGAACACTCCAACCCAAAGAA 58.713 45.455 0.00 0.00 0.00 2.52
2181 2270 5.590530 ACAAGATCAAGCTAGACTACCTG 57.409 43.478 0.00 0.00 0.00 4.00
2236 2325 2.400399 TGTTCACCAAGATCGTCGAAC 58.600 47.619 0.00 0.00 34.69 3.95
2238 2327 2.060326 TCACCAAGATCGTCGAACAC 57.940 50.000 0.00 0.00 0.00 3.32
2256 2345 3.983494 CAGGGCGGCTCGATCGAT 61.983 66.667 19.78 0.00 0.00 3.59
2373 2462 2.618709 CAAGTGGGGAAGTGACAAGAAC 59.381 50.000 0.00 0.00 0.00 3.01
2543 2632 2.087248 CCAAGGTGTGGGGGAGAAT 58.913 57.895 0.00 0.00 44.64 2.40
2569 2658 1.068121 CAGGGGAAACTTCAGGAGGT 58.932 55.000 0.00 0.00 0.00 3.85
2675 2764 1.225704 GGAAGGGACAGAGGCATGG 59.774 63.158 0.00 0.00 0.00 3.66
2700 2789 7.093771 GGTGGATTGGTTTTAGAGATTTGACAT 60.094 37.037 0.00 0.00 0.00 3.06
2706 2795 9.528018 TTGGTTTTAGAGATTTGACATTTCAAC 57.472 29.630 0.00 0.00 41.64 3.18
2784 2876 0.321346 TGCCTCGTCTCTTGCAATGA 59.679 50.000 0.00 0.00 0.00 2.57
2807 2899 1.663643 TGCCGAATTATGCTGTCGTTC 59.336 47.619 0.95 0.00 32.93 3.95
2809 2901 2.033662 GCCGAATTATGCTGTCGTTCTC 60.034 50.000 0.00 0.00 32.93 2.87
2821 2913 2.224281 TGTCGTTCTCTGTTTGCAGGAT 60.224 45.455 0.00 0.00 42.78 3.24
2861 2953 2.616330 CCGCACGGTGTTGCAGAAT 61.616 57.895 10.24 0.00 43.15 2.40
2869 2961 3.186119 CGGTGTTGCAGAATTGTTTTGT 58.814 40.909 0.00 0.00 0.00 2.83
2873 2965 6.638873 CGGTGTTGCAGAATTGTTTTGTAATA 59.361 34.615 0.00 0.00 0.00 0.98
2874 2966 7.328249 CGGTGTTGCAGAATTGTTTTGTAATAT 59.672 33.333 0.00 0.00 0.00 1.28
2875 2967 9.632807 GGTGTTGCAGAATTGTTTTGTAATATA 57.367 29.630 0.00 0.00 0.00 0.86
2880 2972 8.682710 TGCAGAATTGTTTTGTAATATACTCCC 58.317 33.333 0.00 0.00 0.00 4.30
2881 2973 8.903820 GCAGAATTGTTTTGTAATATACTCCCT 58.096 33.333 0.00 0.00 0.00 4.20
2885 2977 9.975218 AATTGTTTTGTAATATACTCCCTCTGT 57.025 29.630 0.00 0.00 0.00 3.41
2886 2978 9.614792 ATTGTTTTGTAATATACTCCCTCTGTC 57.385 33.333 0.00 0.00 0.00 3.51
2887 2979 7.562135 TGTTTTGTAATATACTCCCTCTGTCC 58.438 38.462 0.00 0.00 0.00 4.02
2888 2980 6.742559 TTTGTAATATACTCCCTCTGTCCC 57.257 41.667 0.00 0.00 0.00 4.46
2889 2981 5.412617 TGTAATATACTCCCTCTGTCCCA 57.587 43.478 0.00 0.00 0.00 4.37
2890 2982 5.977533 TGTAATATACTCCCTCTGTCCCAT 58.022 41.667 0.00 0.00 0.00 4.00
2891 2983 7.111136 TGTAATATACTCCCTCTGTCCCATA 57.889 40.000 0.00 0.00 0.00 2.74
2892 2984 7.541074 TGTAATATACTCCCTCTGTCCCATAA 58.459 38.462 0.00 0.00 0.00 1.90
2893 2985 8.184249 TGTAATATACTCCCTCTGTCCCATAAT 58.816 37.037 0.00 0.00 0.00 1.28
2894 2986 9.710818 GTAATATACTCCCTCTGTCCCATAATA 57.289 37.037 0.00 0.00 0.00 0.98
2897 2989 9.884814 ATATACTCCCTCTGTCCCATAATATAC 57.115 37.037 0.00 0.00 0.00 1.47
2898 2990 5.017490 ACTCCCTCTGTCCCATAATATACG 58.983 45.833 0.00 0.00 0.00 3.06
2899 2991 5.222275 ACTCCCTCTGTCCCATAATATACGA 60.222 44.000 0.00 0.00 0.00 3.43
2900 2992 5.262009 TCCCTCTGTCCCATAATATACGAG 58.738 45.833 0.00 0.00 0.00 4.18
2901 2993 4.142138 CCCTCTGTCCCATAATATACGAGC 60.142 50.000 0.00 0.00 0.00 5.03
2902 2994 4.707448 CCTCTGTCCCATAATATACGAGCT 59.293 45.833 0.00 0.00 0.00 4.09
2903 2995 5.186021 CCTCTGTCCCATAATATACGAGCTT 59.814 44.000 0.00 0.00 0.00 3.74
2904 2996 6.295349 CCTCTGTCCCATAATATACGAGCTTT 60.295 42.308 0.00 0.00 0.00 3.51
2905 2997 7.062749 TCTGTCCCATAATATACGAGCTTTT 57.937 36.000 0.00 0.00 0.00 2.27
2906 2998 7.506114 TCTGTCCCATAATATACGAGCTTTTT 58.494 34.615 0.00 0.00 0.00 1.94
2939 3031 8.996024 ACTAGTGCAGTGTTAAAAATGTTTTT 57.004 26.923 3.69 8.36 38.80 1.94
3144 3314 8.487313 TGTCATGTATGTTTGTATGTAAGGTC 57.513 34.615 0.00 0.00 0.00 3.85
3153 3324 7.577979 TGTTTGTATGTAAGGTCGACATTTTC 58.422 34.615 21.58 14.48 38.47 2.29
3166 3337 6.128007 GGTCGACATTTTCTCCATACATGTTT 60.128 38.462 18.91 0.00 0.00 2.83
3180 3351 8.052141 TCCATACATGTTTCATATTGAGGTGAA 58.948 33.333 2.30 0.00 32.86 3.18
3215 4439 1.815817 GAAAAACGCACCCAGCCCAT 61.816 55.000 0.00 0.00 41.38 4.00
3323 4547 4.217767 ACGCTACTACTTTCATGTGAGACA 59.782 41.667 5.34 0.00 0.00 3.41
3326 4550 6.311445 CGCTACTACTTTCATGTGAGACAAAT 59.689 38.462 5.34 0.00 0.00 2.32
3370 4595 7.513371 AACAAATGCAAAATGTGAATCCAAT 57.487 28.000 0.00 0.00 0.00 3.16
3483 4716 1.805945 GCGACAGTAGTCCTTGCCG 60.806 63.158 0.00 0.00 41.87 5.69
3535 4768 7.173390 GGTCAATCCACTAATGCCTATTCTAAC 59.827 40.741 0.00 0.00 35.97 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.486310 CTGGACATAAGCAGTGCCCTA 59.514 52.381 12.58 4.07 0.00 3.53
58 59 2.224305 CGGACAAAGACTCCTTCCTTGT 60.224 50.000 0.00 0.00 0.00 3.16
160 161 0.033796 CATGAATGGGCTGGTGTCCT 60.034 55.000 0.00 0.00 39.11 3.85
205 206 5.593502 TGCTTTCCCAAAAATTCTGCAAAAT 59.406 32.000 0.00 0.00 0.00 1.82
217 219 3.511146 GTCTCATCCATGCTTTCCCAAAA 59.489 43.478 0.00 0.00 0.00 2.44
222 224 1.134401 TCGGTCTCATCCATGCTTTCC 60.134 52.381 0.00 0.00 0.00 3.13
240 242 0.819259 ATCACATTTCCGCCCCATCG 60.819 55.000 0.00 0.00 0.00 3.84
269 271 2.702748 ACTACCAAAGAAGGAGGGTGT 58.297 47.619 0.00 0.00 34.88 4.16
312 314 4.016444 CCATACTACAAACCTGCATTGGT 58.984 43.478 3.73 0.00 43.11 3.67
418 423 8.331740 TGAGAGAGAGGGAATAATTGTGAAAAT 58.668 33.333 0.00 0.00 0.00 1.82
419 424 7.689299 TGAGAGAGAGGGAATAATTGTGAAAA 58.311 34.615 0.00 0.00 0.00 2.29
422 427 8.553085 TTATGAGAGAGAGGGAATAATTGTGA 57.447 34.615 0.00 0.00 0.00 3.58
430 435 9.200817 GCTCTTATATTATGAGAGAGAGGGAAT 57.799 37.037 22.91 0.00 43.51 3.01
431 436 7.338196 CGCTCTTATATTATGAGAGAGAGGGAA 59.662 40.741 22.91 0.00 43.51 3.97
432 437 6.826231 CGCTCTTATATTATGAGAGAGAGGGA 59.174 42.308 22.91 0.00 43.51 4.20
433 438 6.601613 ACGCTCTTATATTATGAGAGAGAGGG 59.398 42.308 25.51 18.40 43.51 4.30
434 439 7.624360 ACGCTCTTATATTATGAGAGAGAGG 57.376 40.000 25.51 15.04 43.51 3.69
435 440 9.906660 AAAACGCTCTTATATTATGAGAGAGAG 57.093 33.333 25.51 18.25 43.51 3.20
460 465 4.951094 CCCTCCGTCCCATAAATGTAAAAA 59.049 41.667 0.00 0.00 0.00 1.94
461 466 4.227754 TCCCTCCGTCCCATAAATGTAAAA 59.772 41.667 0.00 0.00 0.00 1.52
462 467 3.781407 TCCCTCCGTCCCATAAATGTAAA 59.219 43.478 0.00 0.00 0.00 2.01
463 468 3.386063 TCCCTCCGTCCCATAAATGTAA 58.614 45.455 0.00 0.00 0.00 2.41
464 469 2.969950 CTCCCTCCGTCCCATAAATGTA 59.030 50.000 0.00 0.00 0.00 2.29
465 470 1.768870 CTCCCTCCGTCCCATAAATGT 59.231 52.381 0.00 0.00 0.00 2.71
466 471 1.768870 ACTCCCTCCGTCCCATAAATG 59.231 52.381 0.00 0.00 0.00 2.32
467 472 2.191981 ACTCCCTCCGTCCCATAAAT 57.808 50.000 0.00 0.00 0.00 1.40
468 473 2.852714 TACTCCCTCCGTCCCATAAA 57.147 50.000 0.00 0.00 0.00 1.40
469 474 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
470 475 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
471 476 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
472 477 1.835531 GAAAATACTCCCTCCGTCCCA 59.164 52.381 0.00 0.00 0.00 4.37
473 478 1.202498 CGAAAATACTCCCTCCGTCCC 60.202 57.143 0.00 0.00 0.00 4.46
474 479 1.753073 TCGAAAATACTCCCTCCGTCC 59.247 52.381 0.00 0.00 0.00 4.79
475 480 3.185330 GTTCGAAAATACTCCCTCCGTC 58.815 50.000 0.00 0.00 0.00 4.79
476 481 2.093816 GGTTCGAAAATACTCCCTCCGT 60.094 50.000 0.00 0.00 0.00 4.69
477 482 2.093869 TGGTTCGAAAATACTCCCTCCG 60.094 50.000 0.00 0.00 0.00 4.63
478 483 3.622166 TGGTTCGAAAATACTCCCTCC 57.378 47.619 0.00 0.00 0.00 4.30
479 484 4.828829 TCTTGGTTCGAAAATACTCCCTC 58.171 43.478 0.00 0.00 0.00 4.30
480 485 4.903045 TCTTGGTTCGAAAATACTCCCT 57.097 40.909 0.00 0.00 0.00 4.20
481 486 5.472478 ACTTTCTTGGTTCGAAAATACTCCC 59.528 40.000 0.00 0.00 30.73 4.30
482 487 6.555812 ACTTTCTTGGTTCGAAAATACTCC 57.444 37.500 0.00 0.00 30.73 3.85
483 488 8.080083 TGTACTTTCTTGGTTCGAAAATACTC 57.920 34.615 0.00 0.00 35.37 2.59
492 497 7.857569 TCACTAAAATGTACTTTCTTGGTTCG 58.142 34.615 0.00 0.00 0.00 3.95
497 502 9.599322 GTCACATCACTAAAATGTACTTTCTTG 57.401 33.333 0.00 0.00 35.62 3.02
553 559 2.224426 ACTGCTCGGTATTTCCAACACA 60.224 45.455 0.00 0.00 35.57 3.72
595 630 2.526304 AACAGTGTCGAAGCTTAGCA 57.474 45.000 7.07 0.00 0.00 3.49
606 641 3.364964 CCAACGGCTTGATTAACAGTGTC 60.365 47.826 0.00 0.00 0.00 3.67
609 644 2.552315 CACCAACGGCTTGATTAACAGT 59.448 45.455 0.00 0.00 0.00 3.55
610 645 2.668279 GCACCAACGGCTTGATTAACAG 60.668 50.000 0.00 0.00 0.00 3.16
611 646 1.268352 GCACCAACGGCTTGATTAACA 59.732 47.619 0.00 0.00 0.00 2.41
612 647 1.539827 AGCACCAACGGCTTGATTAAC 59.460 47.619 0.00 0.00 38.81 2.01
613 648 1.904287 AGCACCAACGGCTTGATTAA 58.096 45.000 0.00 0.00 38.81 1.40
614 649 2.235155 TCTAGCACCAACGGCTTGATTA 59.765 45.455 0.00 0.00 42.62 1.75
615 650 1.003118 TCTAGCACCAACGGCTTGATT 59.997 47.619 0.00 0.00 42.62 2.57
616 651 0.613260 TCTAGCACCAACGGCTTGAT 59.387 50.000 0.00 0.00 42.62 2.57
617 652 0.394938 TTCTAGCACCAACGGCTTGA 59.605 50.000 0.00 0.00 42.62 3.02
618 653 1.197721 CTTTCTAGCACCAACGGCTTG 59.802 52.381 0.00 0.00 42.62 4.01
619 654 1.523758 CTTTCTAGCACCAACGGCTT 58.476 50.000 0.00 0.00 42.62 4.35
620 655 0.955919 GCTTTCTAGCACCAACGGCT 60.956 55.000 0.00 0.00 46.95 5.52
621 656 1.502190 GCTTTCTAGCACCAACGGC 59.498 57.895 0.00 0.00 46.95 5.68
631 666 6.366332 ACGATGTACTGAAGTTTGCTTTCTAG 59.634 38.462 0.00 0.00 34.61 2.43
632 667 6.220930 ACGATGTACTGAAGTTTGCTTTCTA 58.779 36.000 0.00 0.00 34.61 2.10
633 668 5.057149 ACGATGTACTGAAGTTTGCTTTCT 58.943 37.500 0.00 0.00 34.61 2.52
634 669 5.050363 TGACGATGTACTGAAGTTTGCTTTC 60.050 40.000 0.00 0.00 34.61 2.62
635 670 4.814234 TGACGATGTACTGAAGTTTGCTTT 59.186 37.500 0.00 0.00 34.61 3.51
636 671 4.377021 TGACGATGTACTGAAGTTTGCTT 58.623 39.130 0.00 0.00 37.71 3.91
637 672 3.990092 TGACGATGTACTGAAGTTTGCT 58.010 40.909 0.00 0.00 0.00 3.91
638 673 3.987868 TCTGACGATGTACTGAAGTTTGC 59.012 43.478 0.00 0.00 0.00 3.68
639 674 6.712241 AATCTGACGATGTACTGAAGTTTG 57.288 37.500 0.00 0.00 0.00 2.93
640 675 7.576236 CAAAATCTGACGATGTACTGAAGTTT 58.424 34.615 0.00 0.00 0.00 2.66
641 676 6.347725 GCAAAATCTGACGATGTACTGAAGTT 60.348 38.462 0.00 0.00 0.00 2.66
642 677 5.120830 GCAAAATCTGACGATGTACTGAAGT 59.879 40.000 0.00 0.00 0.00 3.01
643 678 5.120674 TGCAAAATCTGACGATGTACTGAAG 59.879 40.000 0.00 0.00 0.00 3.02
644 679 4.994217 TGCAAAATCTGACGATGTACTGAA 59.006 37.500 0.00 0.00 0.00 3.02
645 680 4.565022 TGCAAAATCTGACGATGTACTGA 58.435 39.130 0.00 0.00 0.00 3.41
646 681 4.926860 TGCAAAATCTGACGATGTACTG 57.073 40.909 0.00 0.00 0.00 2.74
647 682 4.268644 CGATGCAAAATCTGACGATGTACT 59.731 41.667 0.00 0.00 0.00 2.73
648 683 4.032900 ACGATGCAAAATCTGACGATGTAC 59.967 41.667 0.00 0.00 0.00 2.90
649 684 4.180817 ACGATGCAAAATCTGACGATGTA 58.819 39.130 0.00 0.00 0.00 2.29
650 685 3.002791 ACGATGCAAAATCTGACGATGT 58.997 40.909 0.00 0.00 0.00 3.06
651 686 3.544834 GGACGATGCAAAATCTGACGATG 60.545 47.826 0.00 0.00 0.00 3.84
652 687 2.609459 GGACGATGCAAAATCTGACGAT 59.391 45.455 0.00 0.00 0.00 3.73
653 688 1.999735 GGACGATGCAAAATCTGACGA 59.000 47.619 0.00 0.00 0.00 4.20
654 689 1.062587 GGGACGATGCAAAATCTGACG 59.937 52.381 0.00 0.00 0.00 4.35
655 690 2.096496 CAGGGACGATGCAAAATCTGAC 59.904 50.000 0.00 0.00 0.00 3.51
656 691 2.027285 TCAGGGACGATGCAAAATCTGA 60.027 45.455 0.00 0.00 0.00 3.27
657 692 2.358957 TCAGGGACGATGCAAAATCTG 58.641 47.619 0.00 0.00 0.00 2.90
658 693 2.787473 TCAGGGACGATGCAAAATCT 57.213 45.000 0.00 0.00 0.00 2.40
659 694 3.546815 CGATTCAGGGACGATGCAAAATC 60.547 47.826 0.00 0.00 0.00 2.17
660 695 2.355756 CGATTCAGGGACGATGCAAAAT 59.644 45.455 0.00 0.00 0.00 1.82
661 696 1.737236 CGATTCAGGGACGATGCAAAA 59.263 47.619 0.00 0.00 0.00 2.44
662 697 1.368641 CGATTCAGGGACGATGCAAA 58.631 50.000 0.00 0.00 0.00 3.68
663 698 0.461870 CCGATTCAGGGACGATGCAA 60.462 55.000 0.00 0.00 0.00 4.08
664 699 1.143838 CCGATTCAGGGACGATGCA 59.856 57.895 0.00 0.00 0.00 3.96
665 700 2.247437 GCCGATTCAGGGACGATGC 61.247 63.158 0.00 0.00 0.00 3.91
666 701 1.595382 GGCCGATTCAGGGACGATG 60.595 63.158 0.00 0.00 0.00 3.84
667 702 2.063979 TGGCCGATTCAGGGACGAT 61.064 57.895 0.00 0.00 34.26 3.73
668 703 2.682136 TGGCCGATTCAGGGACGA 60.682 61.111 0.00 0.00 34.26 4.20
669 704 2.511600 GTGGCCGATTCAGGGACG 60.512 66.667 0.00 0.00 34.26 4.79
670 705 2.511600 CGTGGCCGATTCAGGGAC 60.512 66.667 0.00 0.00 35.63 4.46
671 706 4.467084 GCGTGGCCGATTCAGGGA 62.467 66.667 0.00 0.00 35.63 4.20
672 707 4.776322 TGCGTGGCCGATTCAGGG 62.776 66.667 0.00 0.00 35.63 4.45
673 708 2.514592 ATGCGTGGCCGATTCAGG 60.515 61.111 0.00 0.00 35.63 3.86
674 709 1.522355 AGATGCGTGGCCGATTCAG 60.522 57.895 0.00 0.00 35.63 3.02
675 710 1.815003 CAGATGCGTGGCCGATTCA 60.815 57.895 0.00 0.00 35.63 2.57
676 711 1.766143 GACAGATGCGTGGCCGATTC 61.766 60.000 0.00 0.00 35.63 2.52
677 712 1.815421 GACAGATGCGTGGCCGATT 60.815 57.895 0.00 0.00 35.63 3.34
678 713 2.202932 GACAGATGCGTGGCCGAT 60.203 61.111 0.00 0.00 35.63 4.18
679 714 4.794439 CGACAGATGCGTGGCCGA 62.794 66.667 0.00 0.00 35.63 5.54
681 716 2.740714 GAACGACAGATGCGTGGCC 61.741 63.158 0.00 0.00 41.75 5.36
682 717 2.778679 GAACGACAGATGCGTGGC 59.221 61.111 0.00 0.00 41.75 5.01
683 718 3.071459 GCGAACGACAGATGCGTGG 62.071 63.158 0.00 0.00 41.75 4.94
684 719 1.885814 TTGCGAACGACAGATGCGTG 61.886 55.000 0.00 0.00 41.75 5.34
685 720 1.218875 TTTGCGAACGACAGATGCGT 61.219 50.000 0.00 0.00 44.94 5.24
686 721 0.517132 CTTTGCGAACGACAGATGCG 60.517 55.000 0.00 0.00 0.00 4.73
687 722 0.512952 ACTTTGCGAACGACAGATGC 59.487 50.000 0.00 0.00 0.00 3.91
688 723 2.987149 ACTACTTTGCGAACGACAGATG 59.013 45.455 0.00 0.00 0.00 2.90
689 724 3.299340 ACTACTTTGCGAACGACAGAT 57.701 42.857 0.00 0.00 0.00 2.90
690 725 2.787601 ACTACTTTGCGAACGACAGA 57.212 45.000 0.00 0.00 0.00 3.41
691 726 3.658342 CGAAACTACTTTGCGAACGACAG 60.658 47.826 0.00 0.00 0.00 3.51
692 727 2.216940 CGAAACTACTTTGCGAACGACA 59.783 45.455 0.00 0.00 0.00 4.35
693 728 2.217167 ACGAAACTACTTTGCGAACGAC 59.783 45.455 0.00 0.00 0.00 4.34
694 729 2.462889 ACGAAACTACTTTGCGAACGA 58.537 42.857 0.00 0.00 0.00 3.85
695 730 2.916735 ACGAAACTACTTTGCGAACG 57.083 45.000 0.00 0.00 0.00 3.95
696 731 5.260900 AGAAAACGAAACTACTTTGCGAAC 58.739 37.500 0.00 0.00 0.00 3.95
697 732 5.473796 AGAAAACGAAACTACTTTGCGAA 57.526 34.783 0.00 0.00 0.00 4.70
698 733 4.025480 GGAGAAAACGAAACTACTTTGCGA 60.025 41.667 0.00 0.00 0.00 5.10
699 734 4.025145 AGGAGAAAACGAAACTACTTTGCG 60.025 41.667 0.00 0.00 0.00 4.85
700 735 5.236695 AGAGGAGAAAACGAAACTACTTTGC 59.763 40.000 0.00 0.00 0.00 3.68
701 736 6.073711 GGAGAGGAGAAAACGAAACTACTTTG 60.074 42.308 0.00 0.00 0.00 2.77
702 737 5.990386 GGAGAGGAGAAAACGAAACTACTTT 59.010 40.000 0.00 0.00 0.00 2.66
703 738 5.070047 TGGAGAGGAGAAAACGAAACTACTT 59.930 40.000 0.00 0.00 0.00 2.24
704 739 4.587684 TGGAGAGGAGAAAACGAAACTACT 59.412 41.667 0.00 0.00 0.00 2.57
705 740 4.879598 TGGAGAGGAGAAAACGAAACTAC 58.120 43.478 0.00 0.00 0.00 2.73
706 741 4.831155 TCTGGAGAGGAGAAAACGAAACTA 59.169 41.667 0.00 0.00 0.00 2.24
707 742 3.641906 TCTGGAGAGGAGAAAACGAAACT 59.358 43.478 0.00 0.00 0.00 2.66
708 743 3.741856 GTCTGGAGAGGAGAAAACGAAAC 59.258 47.826 0.00 0.00 0.00 2.78
709 744 3.641906 AGTCTGGAGAGGAGAAAACGAAA 59.358 43.478 0.00 0.00 0.00 3.46
710 745 3.231818 AGTCTGGAGAGGAGAAAACGAA 58.768 45.455 0.00 0.00 0.00 3.85
711 746 2.877866 AGTCTGGAGAGGAGAAAACGA 58.122 47.619 0.00 0.00 0.00 3.85
712 747 3.005897 TGAAGTCTGGAGAGGAGAAAACG 59.994 47.826 0.00 0.00 0.00 3.60
713 748 4.039852 ACTGAAGTCTGGAGAGGAGAAAAC 59.960 45.833 0.00 0.00 0.00 2.43
749 833 4.056125 CCCTCACGCTCACGCTGA 62.056 66.667 0.00 0.00 45.53 4.26
752 836 4.803426 CTCCCCTCACGCTCACGC 62.803 72.222 0.00 0.00 45.53 5.34
754 838 2.574399 GACTCCCCTCACGCTCAC 59.426 66.667 0.00 0.00 0.00 3.51
756 840 2.680352 TGGACTCCCCTCACGCTC 60.680 66.667 0.00 0.00 35.38 5.03
758 842 4.083862 GGTGGACTCCCCTCACGC 62.084 72.222 0.00 0.00 35.38 5.34
764 848 2.417719 ATGGTATAGGTGGACTCCCC 57.582 55.000 0.00 0.00 0.00 4.81
776 862 9.555727 GTTCTAGTTGGCTTTGAATATGGTATA 57.444 33.333 0.00 0.00 0.00 1.47
777 863 8.052748 TGTTCTAGTTGGCTTTGAATATGGTAT 58.947 33.333 0.00 0.00 0.00 2.73
794 880 6.127026 GGTGATAGGATCAAGGTGTTCTAGTT 60.127 42.308 0.00 0.00 41.69 2.24
818 904 2.227388 GCAATTATCAGCGGGAGAATGG 59.773 50.000 2.72 1.53 37.50 3.16
854 940 2.666508 CCAGTGTCGTGTGTATAGCAAC 59.333 50.000 0.00 0.00 0.00 4.17
855 941 2.353307 CCCAGTGTCGTGTGTATAGCAA 60.353 50.000 0.00 0.00 0.00 3.91
856 942 1.203758 CCCAGTGTCGTGTGTATAGCA 59.796 52.381 0.00 0.00 0.00 3.49
857 943 1.203994 ACCCAGTGTCGTGTGTATAGC 59.796 52.381 0.00 0.00 0.00 2.97
858 944 3.488721 GCTACCCAGTGTCGTGTGTATAG 60.489 52.174 0.00 0.00 0.00 1.31
859 945 2.424601 GCTACCCAGTGTCGTGTGTATA 59.575 50.000 0.00 0.00 0.00 1.47
860 946 1.203994 GCTACCCAGTGTCGTGTGTAT 59.796 52.381 0.00 0.00 0.00 2.29
861 947 0.599558 GCTACCCAGTGTCGTGTGTA 59.400 55.000 0.00 0.00 0.00 2.90
862 948 1.366366 GCTACCCAGTGTCGTGTGT 59.634 57.895 0.00 0.00 0.00 3.72
863 949 1.374252 GGCTACCCAGTGTCGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
864 950 2.927580 CGGCTACCCAGTGTCGTGT 61.928 63.158 0.00 0.00 0.00 4.49
865 951 1.945354 ATCGGCTACCCAGTGTCGTG 61.945 60.000 0.00 0.00 0.00 4.35
866 952 1.255667 AATCGGCTACCCAGTGTCGT 61.256 55.000 0.00 0.00 0.00 4.34
867 953 0.108329 AAATCGGCTACCCAGTGTCG 60.108 55.000 0.00 0.00 0.00 4.35
868 954 1.369625 CAAATCGGCTACCCAGTGTC 58.630 55.000 0.00 0.00 0.00 3.67
869 955 0.676782 GCAAATCGGCTACCCAGTGT 60.677 55.000 0.00 0.00 0.00 3.55
870 956 1.705337 CGCAAATCGGCTACCCAGTG 61.705 60.000 0.00 0.00 33.78 3.66
871 957 1.449601 CGCAAATCGGCTACCCAGT 60.450 57.895 0.00 0.00 33.78 4.00
872 958 2.823829 GCGCAAATCGGCTACCCAG 61.824 63.158 0.30 0.00 38.94 4.45
873 959 2.822255 GCGCAAATCGGCTACCCA 60.822 61.111 0.30 0.00 38.94 4.51
874 960 2.186826 ATGCGCAAATCGGCTACCC 61.187 57.895 17.11 0.00 38.94 3.69
875 961 1.009675 CATGCGCAAATCGGCTACC 60.010 57.895 17.11 0.00 38.94 3.18
876 962 0.588252 ATCATGCGCAAATCGGCTAC 59.412 50.000 17.11 0.00 38.94 3.58
877 963 0.867746 GATCATGCGCAAATCGGCTA 59.132 50.000 17.11 0.00 38.94 3.93
878 964 1.650912 GATCATGCGCAAATCGGCT 59.349 52.632 17.11 0.00 38.94 5.52
879 965 1.723542 CGATCATGCGCAAATCGGC 60.724 57.895 33.53 15.93 38.82 5.54
880 966 4.502335 CGATCATGCGCAAATCGG 57.498 55.556 33.53 22.14 38.82 4.18
894 980 4.592192 CGGCCGGATCAGTGCGAT 62.592 66.667 20.10 0.00 42.26 4.58
898 984 4.758251 TGCACGGCCGGATCAGTG 62.758 66.667 31.76 18.53 37.63 3.66
899 985 3.785859 ATGCACGGCCGGATCAGT 61.786 61.111 31.76 3.35 0.00 3.41
900 986 3.274586 CATGCACGGCCGGATCAG 61.275 66.667 31.76 14.41 0.00 2.90
901 987 4.094646 ACATGCACGGCCGGATCA 62.095 61.111 31.76 23.04 0.00 2.92
902 988 3.576356 CACATGCACGGCCGGATC 61.576 66.667 31.76 17.91 0.00 3.36
903 989 3.918253 AACACATGCACGGCCGGAT 62.918 57.895 31.76 15.48 0.00 4.18
904 990 4.634703 AACACATGCACGGCCGGA 62.635 61.111 31.76 13.61 0.00 5.14
905 991 4.403137 CAACACATGCACGGCCGG 62.403 66.667 31.76 19.49 0.00 6.13
906 992 4.403137 CCAACACATGCACGGCCG 62.403 66.667 26.86 26.86 0.00 6.13
907 993 2.983030 TCCAACACATGCACGGCC 60.983 61.111 0.00 0.00 0.00 6.13
908 994 2.069465 TTGTCCAACACATGCACGGC 62.069 55.000 0.00 0.00 33.90 5.68
909 995 0.383590 TTTGTCCAACACATGCACGG 59.616 50.000 0.00 0.00 33.90 4.94
910 996 1.065401 ACTTTGTCCAACACATGCACG 59.935 47.619 0.00 0.00 33.90 5.34
911 997 2.462889 CACTTTGTCCAACACATGCAC 58.537 47.619 0.00 0.00 33.90 4.57
912 998 1.408340 CCACTTTGTCCAACACATGCA 59.592 47.619 0.00 0.00 33.90 3.96
913 999 1.680735 TCCACTTTGTCCAACACATGC 59.319 47.619 0.00 0.00 33.90 4.06
914 1000 2.294233 CCTCCACTTTGTCCAACACATG 59.706 50.000 0.00 0.00 33.90 3.21
915 1001 2.586425 CCTCCACTTTGTCCAACACAT 58.414 47.619 0.00 0.00 33.90 3.21
916 1002 2.021723 GCCTCCACTTTGTCCAACACA 61.022 52.381 0.00 0.00 0.00 3.72
917 1003 0.668535 GCCTCCACTTTGTCCAACAC 59.331 55.000 0.00 0.00 0.00 3.32
918 1004 0.467290 GGCCTCCACTTTGTCCAACA 60.467 55.000 0.00 0.00 0.00 3.33
919 1005 0.467290 TGGCCTCCACTTTGTCCAAC 60.467 55.000 3.32 0.00 0.00 3.77
920 1006 0.178992 CTGGCCTCCACTTTGTCCAA 60.179 55.000 3.32 0.00 0.00 3.53
921 1007 1.455849 CTGGCCTCCACTTTGTCCA 59.544 57.895 3.32 0.00 0.00 4.02
922 1008 1.973812 GCTGGCCTCCACTTTGTCC 60.974 63.158 3.32 0.00 0.00 4.02
923 1009 2.328099 CGCTGGCCTCCACTTTGTC 61.328 63.158 3.32 0.00 0.00 3.18
924 1010 2.281761 CGCTGGCCTCCACTTTGT 60.282 61.111 3.32 0.00 0.00 2.83
925 1011 3.058160 CCGCTGGCCTCCACTTTG 61.058 66.667 3.32 0.00 0.00 2.77
926 1012 1.774894 TAACCGCTGGCCTCCACTTT 61.775 55.000 3.32 0.00 0.00 2.66
927 1013 2.185310 CTAACCGCTGGCCTCCACTT 62.185 60.000 3.32 0.00 0.00 3.16
928 1014 2.606519 TAACCGCTGGCCTCCACT 60.607 61.111 3.32 0.00 0.00 4.00
929 1015 1.972660 ATCTAACCGCTGGCCTCCAC 61.973 60.000 3.32 0.00 0.00 4.02
930 1016 1.686325 GATCTAACCGCTGGCCTCCA 61.686 60.000 3.32 0.00 0.00 3.86
931 1017 1.069935 GATCTAACCGCTGGCCTCC 59.930 63.158 3.32 0.00 0.00 4.30
932 1018 0.530870 GTGATCTAACCGCTGGCCTC 60.531 60.000 3.32 0.00 0.00 4.70
933 1019 1.522569 GTGATCTAACCGCTGGCCT 59.477 57.895 3.32 0.00 0.00 5.19
934 1020 1.883084 CGTGATCTAACCGCTGGCC 60.883 63.158 0.00 0.00 0.00 5.36
935 1021 2.526120 GCGTGATCTAACCGCTGGC 61.526 63.158 10.78 0.00 43.81 4.85
936 1022 3.706140 GCGTGATCTAACCGCTGG 58.294 61.111 10.78 0.00 43.81 4.85
940 1026 4.485024 ACTACTATGCGTGATCTAACCG 57.515 45.455 0.00 0.00 0.00 4.44
941 1027 5.398711 CGAAACTACTATGCGTGATCTAACC 59.601 44.000 0.00 0.00 0.00 2.85
942 1028 5.970023 ACGAAACTACTATGCGTGATCTAAC 59.030 40.000 0.00 0.00 33.52 2.34
943 1029 6.127810 ACGAAACTACTATGCGTGATCTAA 57.872 37.500 0.00 0.00 33.52 2.10
944 1030 5.746307 ACGAAACTACTATGCGTGATCTA 57.254 39.130 0.00 0.00 33.52 1.98
945 1031 4.634184 ACGAAACTACTATGCGTGATCT 57.366 40.909 0.00 0.00 33.52 2.75
946 1032 4.910456 CCTACGAAACTACTATGCGTGATC 59.090 45.833 0.00 0.00 36.51 2.92
947 1033 4.792057 GCCTACGAAACTACTATGCGTGAT 60.792 45.833 0.00 0.00 36.51 3.06
948 1034 3.488047 GCCTACGAAACTACTATGCGTGA 60.488 47.826 0.00 0.00 36.51 4.35
949 1035 2.787680 GCCTACGAAACTACTATGCGTG 59.212 50.000 0.00 0.00 36.51 5.34
950 1036 2.424601 TGCCTACGAAACTACTATGCGT 59.575 45.455 0.00 0.00 38.81 5.24
951 1037 3.043586 CTGCCTACGAAACTACTATGCG 58.956 50.000 0.00 0.00 0.00 4.73
952 1038 4.291783 CTCTGCCTACGAAACTACTATGC 58.708 47.826 0.00 0.00 0.00 3.14
953 1039 4.202020 TGCTCTGCCTACGAAACTACTATG 60.202 45.833 0.00 0.00 0.00 2.23
954 1040 3.952323 TGCTCTGCCTACGAAACTACTAT 59.048 43.478 0.00 0.00 0.00 2.12
955 1041 3.349927 TGCTCTGCCTACGAAACTACTA 58.650 45.455 0.00 0.00 0.00 1.82
956 1042 2.168496 TGCTCTGCCTACGAAACTACT 58.832 47.619 0.00 0.00 0.00 2.57
957 1043 2.649331 TGCTCTGCCTACGAAACTAC 57.351 50.000 0.00 0.00 0.00 2.73
958 1044 2.094182 CCTTGCTCTGCCTACGAAACTA 60.094 50.000 0.00 0.00 0.00 2.24
959 1045 1.338200 CCTTGCTCTGCCTACGAAACT 60.338 52.381 0.00 0.00 0.00 2.66
960 1046 1.079503 CCTTGCTCTGCCTACGAAAC 58.920 55.000 0.00 0.00 0.00 2.78
961 1047 0.036388 CCCTTGCTCTGCCTACGAAA 60.036 55.000 0.00 0.00 0.00 3.46
962 1048 1.596934 CCCTTGCTCTGCCTACGAA 59.403 57.895 0.00 0.00 0.00 3.85
963 1049 2.359169 CCCCTTGCTCTGCCTACGA 61.359 63.158 0.00 0.00 0.00 3.43
964 1050 2.187946 CCCCTTGCTCTGCCTACG 59.812 66.667 0.00 0.00 0.00 3.51
965 1051 1.524482 CTCCCCTTGCTCTGCCTAC 59.476 63.158 0.00 0.00 0.00 3.18
966 1052 2.370445 GCTCCCCTTGCTCTGCCTA 61.370 63.158 0.00 0.00 0.00 3.93
967 1053 3.726144 GCTCCCCTTGCTCTGCCT 61.726 66.667 0.00 0.00 0.00 4.75
968 1054 4.811364 GGCTCCCCTTGCTCTGCC 62.811 72.222 0.00 0.00 0.00 4.85
969 1055 3.991725 CTGGCTCCCCTTGCTCTGC 62.992 68.421 0.00 0.00 0.00 4.26
970 1056 2.271497 CTGGCTCCCCTTGCTCTG 59.729 66.667 0.00 0.00 0.00 3.35
971 1057 3.013932 CCTGGCTCCCCTTGCTCT 61.014 66.667 0.00 0.00 0.00 4.09
972 1058 4.120755 CCCTGGCTCCCCTTGCTC 62.121 72.222 0.00 0.00 0.00 4.26
975 1061 3.951769 CTTGCCCTGGCTCCCCTTG 62.952 68.421 9.97 0.00 42.51 3.61
976 1062 3.665971 CTTGCCCTGGCTCCCCTT 61.666 66.667 9.97 0.00 42.51 3.95
977 1063 4.682714 TCTTGCCCTGGCTCCCCT 62.683 66.667 9.97 0.00 42.51 4.79
978 1064 3.651980 CTTCTTGCCCTGGCTCCCC 62.652 68.421 9.97 0.00 42.51 4.81
991 1077 0.392998 AATGGCCGCATCGTCTTCTT 60.393 50.000 0.00 0.00 0.00 2.52
1013 1099 3.827898 GGAGGGGACAGAGACGCG 61.828 72.222 3.53 3.53 0.00 6.01
1014 1100 2.363147 AGGAGGGGACAGAGACGC 60.363 66.667 0.00 0.00 0.00 5.19
1022 1108 2.766229 GCAGGAGGAGGAGGGGAC 60.766 72.222 0.00 0.00 0.00 4.46
1026 1112 1.457455 GAGGAGCAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
1251 1340 4.521062 GGCGTGAGGAGCAGCGAT 62.521 66.667 0.00 0.00 36.08 4.58
1368 1457 2.178521 GGACGGATCGCGCGATAT 59.821 61.111 41.84 30.09 34.60 1.63
1431 1520 2.742372 GCATCGACCCGCACTGTT 60.742 61.111 0.00 0.00 0.00 3.16
1728 1817 1.524482 GATGCCGAAGCTTCCTCCT 59.476 57.895 20.62 5.58 40.80 3.69
1823 1912 0.611062 TTCCTCGTCCTCGTCACCAT 60.611 55.000 0.00 0.00 38.33 3.55
1839 1928 1.092345 GGAGACGGAGCATTGCTTCC 61.092 60.000 13.35 11.35 39.88 3.46
1905 1994 0.449388 GCTCCATTTCCAGCTTGACG 59.551 55.000 0.00 0.00 32.48 4.35
1912 2001 0.040204 ACCTTGGGCTCCATTTCCAG 59.960 55.000 0.00 0.00 31.53 3.86
1916 2005 0.625849 ATCGACCTTGGGCTCCATTT 59.374 50.000 0.00 0.00 31.53 2.32
1917 2006 0.107017 CATCGACCTTGGGCTCCATT 60.107 55.000 0.00 0.00 31.53 3.16
1975 2064 2.758009 GCTGCAATTGCCAAGAAAGAA 58.242 42.857 26.94 4.58 41.18 2.52
1977 2066 1.065358 CGCTGCAATTGCCAAGAAAG 58.935 50.000 26.94 17.02 41.18 2.62
2067 2156 2.886862 AGAGCATCGACTGAATCCAG 57.113 50.000 0.00 0.00 43.11 3.86
2154 2243 8.221944 AGGTAGTCTAGCTTGATCTTGTAGTAT 58.778 37.037 5.73 0.00 31.36 2.12
2181 2270 2.715624 GCCGGAATTGGCGATGTC 59.284 61.111 5.05 0.00 46.75 3.06
2236 2325 4.899239 GATCGAGCCGCCCTGGTG 62.899 72.222 0.00 0.00 41.21 4.17
2337 2426 4.383118 CCCCACTTGACATAGTACTGGAAG 60.383 50.000 5.39 3.05 42.29 3.46
2373 2462 3.443099 TGCTTCTCCTCATATGACACG 57.557 47.619 0.00 0.00 0.00 4.49
2543 2632 3.072476 CCTGAAGTTTCCCCTGAAGTACA 59.928 47.826 0.00 0.00 0.00 2.90
2569 2658 0.178967 TCTGCCTTCACCATTGCCAA 60.179 50.000 0.00 0.00 0.00 4.52
2675 2764 7.214467 TGTCAAATCTCTAAAACCAATCCAC 57.786 36.000 0.00 0.00 0.00 4.02
2700 2789 1.178276 ACACAAACCTGCGGTTGAAA 58.822 45.000 12.63 0.00 46.20 2.69
2705 2794 0.395173 AAGGAACACAAACCTGCGGT 60.395 50.000 0.00 0.00 37.65 5.68
2706 2795 0.310854 GAAGGAACACAAACCTGCGG 59.689 55.000 0.00 0.00 36.56 5.69
2754 2846 2.154462 AGACGAGGCAAGTGGATTTTG 58.846 47.619 0.00 0.00 0.00 2.44
2784 2876 1.599071 CGACAGCATAATTCGGCACAT 59.401 47.619 4.34 0.00 0.00 3.21
2809 2901 8.567948 TCTAGTTTCTTTTAATCCTGCAAACAG 58.432 33.333 0.00 0.00 44.05 3.16
2821 2913 9.607988 TGCGGAATATCATCTAGTTTCTTTTAA 57.392 29.630 0.00 0.00 0.00 1.52
2861 2953 8.044908 GGACAGAGGGAGTATATTACAAAACAA 58.955 37.037 0.00 0.00 0.00 2.83
2914 3006 8.996024 AAAAACATTTTTAACACTGCACTAGT 57.004 26.923 0.45 0.00 38.50 2.57
2933 3025 9.983024 TTCCCTCTGTTCCATAATATAAAAACA 57.017 29.630 0.00 0.00 0.00 2.83
2942 3034 9.887862 ATTGAAATATTCCCTCTGTTCCATAAT 57.112 29.630 0.00 0.00 0.00 1.28
2943 3035 9.135189 CATTGAAATATTCCCTCTGTTCCATAA 57.865 33.333 0.00 0.00 0.00 1.90
2944 3036 8.501904 TCATTGAAATATTCCCTCTGTTCCATA 58.498 33.333 0.00 0.00 0.00 2.74
2945 3037 7.356680 TCATTGAAATATTCCCTCTGTTCCAT 58.643 34.615 0.00 0.00 0.00 3.41
2946 3038 6.730447 TCATTGAAATATTCCCTCTGTTCCA 58.270 36.000 0.00 0.00 0.00 3.53
2947 3039 7.830099 ATCATTGAAATATTCCCTCTGTTCC 57.170 36.000 0.00 0.00 0.00 3.62
2952 3044 9.887862 ACCAAATATCATTGAAATATTCCCTCT 57.112 29.630 0.00 0.00 30.75 3.69
3129 3221 7.803724 AGAAAATGTCGACCTTACATACAAAC 58.196 34.615 14.12 0.00 36.56 2.93
3144 3314 6.841119 TGAAACATGTATGGAGAAAATGTCG 58.159 36.000 0.00 0.00 31.29 4.35
3153 3324 7.716560 TCACCTCAATATGAAACATGTATGGAG 59.283 37.037 0.00 0.63 0.00 3.86
3166 3337 9.241919 ACATGTAAACATTTCACCTCAATATGA 57.758 29.630 0.00 0.00 33.61 2.15
3180 3351 8.536407 GTGCGTTTTTCTTAACATGTAAACATT 58.464 29.630 16.05 0.00 33.61 2.71
3202 4425 2.188829 CACATATGGGCTGGGTGCG 61.189 63.158 7.80 0.00 44.05 5.34
3215 4439 6.727231 TCTTGGAAGTTTACTAGTCCCACATA 59.273 38.462 0.00 0.00 0.00 2.29
3370 4595 7.206687 ACCGAAAACAAGAGCATAATTTTGAA 58.793 30.769 0.00 0.00 0.00 2.69
3441 4667 6.756542 GCTTTGGAGTTACAATTTGTTCACTT 59.243 34.615 7.45 0.00 0.00 3.16
3483 4716 1.298938 GTCGCCGATCGGGTAGAAC 60.299 63.158 33.98 15.97 39.05 3.01
3515 4748 7.136822 ACATGTTAGAATAGGCATTAGTGGA 57.863 36.000 0.00 0.00 0.00 4.02
3516 4749 7.387948 GGTACATGTTAGAATAGGCATTAGTGG 59.612 40.741 2.30 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.