Multiple sequence alignment - TraesCS4A01G081000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G081000 chr4A 100.000 2726 0 0 1 2726 83573146 83570421 0.000000e+00 5035
1 TraesCS4A01G081000 chr4A 96.092 742 28 1 1985 2726 70746969 70746229 0.000000e+00 1208
2 TraesCS4A01G081000 chr4A 95.946 740 30 0 1987 2726 599486852 599486113 0.000000e+00 1201
3 TraesCS4A01G081000 chr4D 93.882 1994 52 24 1 1969 380294320 380296268 0.000000e+00 2942
4 TraesCS4A01G081000 chr4B 91.575 1994 75 41 1 1965 467716870 467718799 0.000000e+00 2665
5 TraesCS4A01G081000 chr2A 97.170 742 21 0 1985 2726 644068879 644068138 0.000000e+00 1254
6 TraesCS4A01G081000 chr3A 97.035 742 22 0 1985 2726 472422481 472423222 0.000000e+00 1249
7 TraesCS4A01G081000 chr6A 96.640 744 21 2 1985 2726 216010316 216011057 0.000000e+00 1232
8 TraesCS4A01G081000 chr6A 96.231 743 26 2 1985 2726 524862649 524861908 0.000000e+00 1216
9 TraesCS4A01G081000 chr5A 95.940 739 30 0 1988 2726 323918423 323917685 0.000000e+00 1199
10 TraesCS4A01G081000 chr5A 81.361 338 54 7 1112 1449 471946672 471947000 1.610000e-67 267
11 TraesCS4A01G081000 chr1B 93.271 743 43 2 1985 2726 683322535 683321799 0.000000e+00 1088
12 TraesCS4A01G081000 chr6B 92.173 741 58 0 1985 2725 585717827 585718567 0.000000e+00 1048
13 TraesCS4A01G081000 chr7B 83.186 339 46 9 1112 1449 165098789 165099117 1.590000e-77 300
14 TraesCS4A01G081000 chr7D 82.891 339 47 9 1112 1449 200765225 200765553 7.380000e-76 294
15 TraesCS4A01G081000 chr7D 78.012 332 60 9 1099 1425 578465358 578465681 2.140000e-46 196
16 TraesCS4A01G081000 chr7A 82.891 339 47 9 1112 1449 214301930 214302258 7.380000e-76 294
17 TraesCS4A01G081000 chr5B 82.006 339 50 9 1112 1449 438557310 438557638 7.430000e-71 278
18 TraesCS4A01G081000 chr5D 81.416 339 52 9 1112 1449 369427996 369428324 1.610000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G081000 chr4A 83570421 83573146 2725 True 5035 5035 100.000 1 2726 1 chr4A.!!$R2 2725
1 TraesCS4A01G081000 chr4A 70746229 70746969 740 True 1208 1208 96.092 1985 2726 1 chr4A.!!$R1 741
2 TraesCS4A01G081000 chr4A 599486113 599486852 739 True 1201 1201 95.946 1987 2726 1 chr4A.!!$R3 739
3 TraesCS4A01G081000 chr4D 380294320 380296268 1948 False 2942 2942 93.882 1 1969 1 chr4D.!!$F1 1968
4 TraesCS4A01G081000 chr4B 467716870 467718799 1929 False 2665 2665 91.575 1 1965 1 chr4B.!!$F1 1964
5 TraesCS4A01G081000 chr2A 644068138 644068879 741 True 1254 1254 97.170 1985 2726 1 chr2A.!!$R1 741
6 TraesCS4A01G081000 chr3A 472422481 472423222 741 False 1249 1249 97.035 1985 2726 1 chr3A.!!$F1 741
7 TraesCS4A01G081000 chr6A 216010316 216011057 741 False 1232 1232 96.640 1985 2726 1 chr6A.!!$F1 741
8 TraesCS4A01G081000 chr6A 524861908 524862649 741 True 1216 1216 96.231 1985 2726 1 chr6A.!!$R1 741
9 TraesCS4A01G081000 chr5A 323917685 323918423 738 True 1199 1199 95.940 1988 2726 1 chr5A.!!$R1 738
10 TraesCS4A01G081000 chr1B 683321799 683322535 736 True 1088 1088 93.271 1985 2726 1 chr1B.!!$R1 741
11 TraesCS4A01G081000 chr6B 585717827 585718567 740 False 1048 1048 92.173 1985 2725 1 chr6B.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 713 0.758734 TTGATCCGCCACATCCTAGG 59.241 55.0 0.82 0.82 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1825 0.041312 GCGCGCCATGGTAAATACTG 60.041 55.0 23.24 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.666190 GCGTGTCCTGCTGCTTCA 60.666 61.111 0.00 0.00 0.00 3.02
96 101 2.749441 GCAGCAGGAGCCTTGACC 60.749 66.667 0.00 0.00 43.56 4.02
122 131 2.308866 TCCCTCCCCTTGAAATCTGAAC 59.691 50.000 0.00 0.00 0.00 3.18
243 253 1.087501 GTTCTCCATCTTTGCCGTCC 58.912 55.000 0.00 0.00 0.00 4.79
541 554 7.394016 TGTGATGAGTGTGTGACCTATTTTAT 58.606 34.615 0.00 0.00 0.00 1.40
694 713 0.758734 TTGATCCGCCACATCCTAGG 59.241 55.000 0.82 0.82 0.00 3.02
922 949 4.499188 GGATGGTGCACAGATCATTCATTG 60.499 45.833 20.43 0.00 0.00 2.82
923 950 3.423749 TGGTGCACAGATCATTCATTGT 58.576 40.909 20.43 0.00 0.00 2.71
926 953 5.106197 TGGTGCACAGATCATTCATTGTTAC 60.106 40.000 20.43 0.00 0.00 2.50
927 954 5.124457 GGTGCACAGATCATTCATTGTTACT 59.876 40.000 20.43 0.00 0.00 2.24
929 956 7.148255 GGTGCACAGATCATTCATTGTTACTTA 60.148 37.037 20.43 0.00 0.00 2.24
930 957 8.400947 GTGCACAGATCATTCATTGTTACTTAT 58.599 33.333 13.17 0.00 0.00 1.73
931 958 8.400186 TGCACAGATCATTCATTGTTACTTATG 58.600 33.333 0.00 0.00 0.00 1.90
932 959 7.377928 GCACAGATCATTCATTGTTACTTATGC 59.622 37.037 0.00 0.00 0.00 3.14
933 960 7.585210 CACAGATCATTCATTGTTACTTATGCG 59.415 37.037 0.00 0.00 0.00 4.73
1035 1075 3.728373 CCCTACACCACCCAGCCC 61.728 72.222 0.00 0.00 0.00 5.19
1242 1285 0.387202 AGATCATGAAGGCCGACGAG 59.613 55.000 0.00 0.00 0.00 4.18
1704 1747 3.011517 TCAGCTGGCTTCCCTCCC 61.012 66.667 15.13 0.00 0.00 4.30
1741 1784 1.227468 TGATCGATGCCAGAGCTGC 60.227 57.895 0.54 0.00 40.80 5.25
1761 1804 1.230635 ATGCGCGCATTGGATACTCC 61.231 55.000 39.13 2.27 36.96 3.85
1762 1805 1.595382 GCGCGCATTGGATACTCCT 60.595 57.895 29.10 0.00 37.46 3.69
1766 1809 1.959042 CGCATTGGATACTCCTTGCT 58.041 50.000 15.05 0.00 41.23 3.91
1767 1810 2.806745 GCGCATTGGATACTCCTTGCTA 60.807 50.000 0.30 0.00 41.23 3.49
1768 1811 3.062763 CGCATTGGATACTCCTTGCTAG 58.937 50.000 15.05 0.00 41.23 3.42
1769 1812 3.493350 CGCATTGGATACTCCTTGCTAGT 60.493 47.826 15.05 0.00 41.23 2.57
1770 1813 4.262036 CGCATTGGATACTCCTTGCTAGTA 60.262 45.833 15.05 0.00 41.23 1.82
1771 1814 5.567623 CGCATTGGATACTCCTTGCTAGTAT 60.568 44.000 15.05 0.00 41.23 2.12
1772 1815 6.234177 GCATTGGATACTCCTTGCTAGTATT 58.766 40.000 11.82 0.00 39.65 1.89
1773 1816 6.712547 GCATTGGATACTCCTTGCTAGTATTT 59.287 38.462 11.82 0.00 39.65 1.40
1774 1817 7.878127 GCATTGGATACTCCTTGCTAGTATTTA 59.122 37.037 11.82 0.00 39.65 1.40
1775 1818 9.209175 CATTGGATACTCCTTGCTAGTATTTAC 57.791 37.037 0.00 0.00 39.65 2.01
1776 1819 6.978338 TGGATACTCCTTGCTAGTATTTACG 58.022 40.000 0.00 0.00 39.65 3.18
1777 1820 6.015688 TGGATACTCCTTGCTAGTATTTACGG 60.016 42.308 0.00 0.00 39.65 4.02
1778 1821 6.208204 GGATACTCCTTGCTAGTATTTACGGA 59.792 42.308 0.00 0.00 39.65 4.69
1779 1822 7.093858 GGATACTCCTTGCTAGTATTTACGGAT 60.094 40.741 0.00 0.00 39.65 4.18
1780 1823 6.481434 ACTCCTTGCTAGTATTTACGGATT 57.519 37.500 0.00 0.00 0.00 3.01
1781 1824 6.514063 ACTCCTTGCTAGTATTTACGGATTC 58.486 40.000 0.00 0.00 0.00 2.52
1782 1825 5.850614 TCCTTGCTAGTATTTACGGATTCC 58.149 41.667 0.00 0.00 0.00 3.01
1783 1826 5.364446 TCCTTGCTAGTATTTACGGATTCCA 59.636 40.000 3.09 0.00 0.00 3.53
1784 1827 5.696724 CCTTGCTAGTATTTACGGATTCCAG 59.303 44.000 3.09 0.00 0.00 3.86
1794 1837 9.498176 GTATTTACGGATTCCAGTATTTACCAT 57.502 33.333 3.09 0.00 0.00 3.55
1803 1846 0.041312 GTATTTACCATGGCGCGCAG 60.041 55.000 34.42 21.24 0.00 5.18
1818 1861 2.525891 CGCGCAGTGTAATTGTAATTGC 59.474 45.455 8.75 0.00 0.00 3.56
1819 1862 2.851824 GCGCAGTGTAATTGTAATTGCC 59.148 45.455 0.30 0.00 31.08 4.52
1821 1864 4.342772 CGCAGTGTAATTGTAATTGCCTC 58.657 43.478 0.27 0.00 31.08 4.70
1822 1865 4.094887 CGCAGTGTAATTGTAATTGCCTCT 59.905 41.667 0.27 0.00 31.08 3.69
1823 1866 5.391950 CGCAGTGTAATTGTAATTGCCTCTT 60.392 40.000 0.27 0.00 31.08 2.85
1824 1867 5.801947 GCAGTGTAATTGTAATTGCCTCTTG 59.198 40.000 0.27 0.00 31.08 3.02
1825 1868 5.801947 CAGTGTAATTGTAATTGCCTCTTGC 59.198 40.000 0.27 0.00 41.77 4.01
1929 1972 7.168219 AGCAGATAACTACCATGAGTTTGAAA 58.832 34.615 5.23 0.00 40.22 2.69
1930 1973 7.831193 AGCAGATAACTACCATGAGTTTGAAAT 59.169 33.333 5.23 0.00 40.22 2.17
1931 1974 8.462016 GCAGATAACTACCATGAGTTTGAAATT 58.538 33.333 5.23 0.00 40.22 1.82
1972 2015 1.308047 TGCATCATCCGTGCATTACC 58.692 50.000 0.00 0.00 46.76 2.85
1973 2016 1.134128 TGCATCATCCGTGCATTACCT 60.134 47.619 0.00 0.00 46.76 3.08
1974 2017 1.949525 GCATCATCCGTGCATTACCTT 59.050 47.619 0.00 0.00 42.08 3.50
1975 2018 3.138304 GCATCATCCGTGCATTACCTTA 58.862 45.455 0.00 0.00 42.08 2.69
1976 2019 3.753272 GCATCATCCGTGCATTACCTTAT 59.247 43.478 0.00 0.00 42.08 1.73
1977 2020 4.935205 GCATCATCCGTGCATTACCTTATA 59.065 41.667 0.00 0.00 42.08 0.98
1978 2021 5.586243 GCATCATCCGTGCATTACCTTATAT 59.414 40.000 0.00 0.00 42.08 0.86
1979 2022 6.761242 GCATCATCCGTGCATTACCTTATATA 59.239 38.462 0.00 0.00 42.08 0.86
1980 2023 7.442364 GCATCATCCGTGCATTACCTTATATAT 59.558 37.037 0.00 0.00 42.08 0.86
1981 2024 8.768019 CATCATCCGTGCATTACCTTATATATG 58.232 37.037 0.00 0.00 0.00 1.78
1982 2025 7.272244 TCATCCGTGCATTACCTTATATATGG 58.728 38.462 12.10 12.10 0.00 2.74
1983 2026 6.614694 TCCGTGCATTACCTTATATATGGT 57.385 37.500 20.67 20.67 40.12 3.55
2003 2046 2.562738 GTTTGGCCTGCAGGAAACTATT 59.437 45.455 37.21 0.00 40.21 1.73
2168 2211 0.319641 GTCGTTTCTTCCTGTCGGCT 60.320 55.000 0.00 0.00 0.00 5.52
2198 2241 1.667830 CCGCGCAACTCTCCAAGAA 60.668 57.895 8.75 0.00 0.00 2.52
2472 2515 3.345414 TGGACCAACAAACAACTAACGT 58.655 40.909 0.00 0.00 0.00 3.99
2589 2635 1.685765 CACGTCCCCCTCATCCTCA 60.686 63.158 0.00 0.00 0.00 3.86
2594 2640 1.768077 CCCCCTCATCCTCACCTCC 60.768 68.421 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.688507 CTTCAGCACACACGGTAATCT 58.311 47.619 0.00 0.00 0.00 2.40
91 96 3.327404 GGGAGGGAAGGCGGTCAA 61.327 66.667 0.00 0.00 0.00 3.18
94 99 4.677151 AAGGGGAGGGAAGGCGGT 62.677 66.667 0.00 0.00 0.00 5.68
95 100 4.115199 CAAGGGGAGGGAAGGCGG 62.115 72.222 0.00 0.00 0.00 6.13
96 101 2.137177 TTTCAAGGGGAGGGAAGGCG 62.137 60.000 0.00 0.00 0.00 5.52
122 131 3.737850 AGTGAGCTTGAGTTCTTTCTGG 58.262 45.455 0.00 0.00 0.00 3.86
151 160 0.723981 GCTTTGCAGATCAGACGACC 59.276 55.000 0.00 0.00 0.00 4.79
152 161 0.723981 GGCTTTGCAGATCAGACGAC 59.276 55.000 0.00 0.00 0.00 4.34
484 497 2.943345 GCATGATCGGCGGCGTTAG 61.943 63.158 31.06 17.54 0.00 2.34
541 554 7.773224 TCTCTCACAAAATGGACTAGTTCAAAA 59.227 33.333 8.23 0.00 0.00 2.44
600 613 3.471680 GGGCCTACTTATCTCTTGCTTG 58.528 50.000 0.84 0.00 0.00 4.01
879 906 2.861935 CCCGTAAGTAACAATGGCTACG 59.138 50.000 0.00 0.00 0.00 3.51
922 949 8.064814 GGAGAAAATCAAGATCGCATAAGTAAC 58.935 37.037 0.00 0.00 0.00 2.50
923 950 7.768582 TGGAGAAAATCAAGATCGCATAAGTAA 59.231 33.333 0.00 0.00 0.00 2.24
926 953 6.609237 TGGAGAAAATCAAGATCGCATAAG 57.391 37.500 0.00 0.00 0.00 1.73
927 954 6.513884 GCATGGAGAAAATCAAGATCGCATAA 60.514 38.462 0.00 0.00 0.00 1.90
929 956 4.261489 GCATGGAGAAAATCAAGATCGCAT 60.261 41.667 0.00 0.00 0.00 4.73
930 957 3.065786 GCATGGAGAAAATCAAGATCGCA 59.934 43.478 0.00 0.00 0.00 5.10
931 958 3.065786 TGCATGGAGAAAATCAAGATCGC 59.934 43.478 0.00 0.00 0.00 4.58
932 959 4.788840 GCTGCATGGAGAAAATCAAGATCG 60.789 45.833 19.59 0.00 0.00 3.69
933 960 4.338682 AGCTGCATGGAGAAAATCAAGATC 59.661 41.667 19.59 0.00 0.00 2.75
1188 1231 1.003839 CGGCAGCTGGTGGTTCTTA 60.004 57.895 17.12 0.00 0.00 2.10
1215 1258 4.344968 TCGGCCTTCATGATCTTCTTGATA 59.655 41.667 0.00 0.00 35.14 2.15
1242 1285 2.240500 GGAGATCATGCGCACGTCC 61.241 63.158 14.90 11.00 0.00 4.79
1677 1720 3.138798 CCAGCTGAGCCACCATGC 61.139 66.667 17.39 0.00 0.00 4.06
1741 1784 0.110509 GAGTATCCAATGCGCGCATG 60.111 55.000 43.67 33.56 36.68 4.06
1761 1804 6.281405 ACTGGAATCCGTAAATACTAGCAAG 58.719 40.000 0.00 0.00 0.00 4.01
1762 1805 6.229936 ACTGGAATCCGTAAATACTAGCAA 57.770 37.500 0.00 0.00 0.00 3.91
1767 1810 8.707449 TGGTAAATACTGGAATCCGTAAATACT 58.293 33.333 17.67 2.07 0.00 2.12
1768 1811 8.891671 TGGTAAATACTGGAATCCGTAAATAC 57.108 34.615 7.76 11.59 0.00 1.89
1769 1812 9.496873 CATGGTAAATACTGGAATCCGTAAATA 57.503 33.333 7.76 3.22 0.00 1.40
1770 1813 7.447238 CCATGGTAAATACTGGAATCCGTAAAT 59.553 37.037 2.57 3.93 0.00 1.40
1771 1814 6.768861 CCATGGTAAATACTGGAATCCGTAAA 59.231 38.462 2.57 0.00 0.00 2.01
1772 1815 6.292923 CCATGGTAAATACTGGAATCCGTAA 58.707 40.000 2.57 0.00 0.00 3.18
1773 1816 5.743714 GCCATGGTAAATACTGGAATCCGTA 60.744 44.000 14.67 6.48 0.00 4.02
1774 1817 4.714632 CCATGGTAAATACTGGAATCCGT 58.285 43.478 2.57 0.00 0.00 4.69
1775 1818 3.502211 GCCATGGTAAATACTGGAATCCG 59.498 47.826 14.67 0.00 0.00 4.18
1776 1819 3.502211 CGCCATGGTAAATACTGGAATCC 59.498 47.826 14.67 0.00 0.00 3.01
1777 1820 3.058224 GCGCCATGGTAAATACTGGAATC 60.058 47.826 14.67 0.00 0.00 2.52
1778 1821 2.884639 GCGCCATGGTAAATACTGGAAT 59.115 45.455 14.67 0.00 0.00 3.01
1779 1822 2.294074 GCGCCATGGTAAATACTGGAA 58.706 47.619 14.67 0.00 0.00 3.53
1780 1823 1.808512 CGCGCCATGGTAAATACTGGA 60.809 52.381 14.67 0.00 0.00 3.86
1781 1824 0.586319 CGCGCCATGGTAAATACTGG 59.414 55.000 14.67 0.00 0.00 4.00
1782 1825 0.041312 GCGCGCCATGGTAAATACTG 60.041 55.000 23.24 0.00 0.00 2.74
1783 1826 0.462937 TGCGCGCCATGGTAAATACT 60.463 50.000 30.77 0.00 0.00 2.12
1784 1827 0.041312 CTGCGCGCCATGGTAAATAC 60.041 55.000 30.77 0.00 0.00 1.89
1794 1837 0.670854 TACAATTACACTGCGCGCCA 60.671 50.000 30.77 15.83 0.00 5.69
1818 1861 5.677091 GCCATACTTACACAATTGCAAGAGG 60.677 44.000 17.30 15.54 0.00 3.69
1819 1862 5.106197 TGCCATACTTACACAATTGCAAGAG 60.106 40.000 17.30 2.00 0.00 2.85
1821 1864 5.058149 TGCCATACTTACACAATTGCAAG 57.942 39.130 4.94 9.15 0.00 4.01
1822 1865 5.047448 ACATGCCATACTTACACAATTGCAA 60.047 36.000 5.05 0.00 0.00 4.08
1823 1866 4.462132 ACATGCCATACTTACACAATTGCA 59.538 37.500 5.05 0.00 0.00 4.08
1824 1867 4.997565 ACATGCCATACTTACACAATTGC 58.002 39.130 5.05 0.00 0.00 3.56
1825 1868 6.441093 AGACATGCCATACTTACACAATTG 57.559 37.500 3.24 3.24 0.00 2.32
1826 1869 6.855836 CAAGACATGCCATACTTACACAATT 58.144 36.000 0.00 0.00 0.00 2.32
1827 1870 6.441093 CAAGACATGCCATACTTACACAAT 57.559 37.500 0.00 0.00 0.00 2.71
1828 1871 5.878332 CAAGACATGCCATACTTACACAA 57.122 39.130 0.00 0.00 0.00 3.33
1929 1972 1.760613 CCTGCATGCCTGGATTCAAAT 59.239 47.619 16.68 0.00 34.66 2.32
1930 1973 1.187974 CCTGCATGCCTGGATTCAAA 58.812 50.000 16.68 0.00 34.66 2.69
1931 1974 0.332293 TCCTGCATGCCTGGATTCAA 59.668 50.000 21.10 3.86 36.72 2.69
1932 1975 0.554305 ATCCTGCATGCCTGGATTCA 59.446 50.000 26.85 10.97 46.60 2.57
1933 1976 2.574006 TATCCTGCATGCCTGGATTC 57.426 50.000 32.94 2.24 46.60 2.52
1934 1977 2.803956 CATATCCTGCATGCCTGGATT 58.196 47.619 32.94 22.52 46.60 3.01
1969 2012 5.073827 TGCAGGCCAAACCATATATAAGGTA 59.926 40.000 9.99 0.00 43.14 3.08
1970 2013 4.141041 TGCAGGCCAAACCATATATAAGGT 60.141 41.667 5.01 3.75 43.14 3.50
1971 2014 4.406456 TGCAGGCCAAACCATATATAAGG 58.594 43.478 5.01 2.38 43.14 2.69
1972 2015 4.460382 CCTGCAGGCCAAACCATATATAAG 59.540 45.833 22.33 0.00 43.14 1.73
1973 2016 4.105537 TCCTGCAGGCCAAACCATATATAA 59.894 41.667 28.91 1.20 43.14 0.98
1974 2017 3.655291 TCCTGCAGGCCAAACCATATATA 59.345 43.478 28.91 1.95 43.14 0.86
1975 2018 2.446666 TCCTGCAGGCCAAACCATATAT 59.553 45.455 28.91 0.00 43.14 0.86
1976 2019 1.849692 TCCTGCAGGCCAAACCATATA 59.150 47.619 28.91 2.69 43.14 0.86
1977 2020 0.630673 TCCTGCAGGCCAAACCATAT 59.369 50.000 28.91 0.00 43.14 1.78
1978 2021 0.407528 TTCCTGCAGGCCAAACCATA 59.592 50.000 28.91 4.13 43.14 2.74
1979 2022 0.471591 TTTCCTGCAGGCCAAACCAT 60.472 50.000 28.91 0.00 43.14 3.55
1980 2023 1.075674 TTTCCTGCAGGCCAAACCA 60.076 52.632 28.91 5.83 43.14 3.67
1981 2024 1.115326 AGTTTCCTGCAGGCCAAACC 61.115 55.000 31.56 20.39 34.34 3.27
1982 2025 1.616159 TAGTTTCCTGCAGGCCAAAC 58.384 50.000 29.66 29.66 34.14 2.93
1983 2026 2.603075 ATAGTTTCCTGCAGGCCAAA 57.397 45.000 28.91 20.66 34.44 3.28
2027 2070 2.025719 CGGATCGACAGCTAGCAGA 58.974 57.895 18.83 10.83 0.00 4.26
2198 2241 3.756434 CGTAAACCACAATCACCTTCCAT 59.244 43.478 0.00 0.00 0.00 3.41
2202 2245 1.883926 GCCGTAAACCACAATCACCTT 59.116 47.619 0.00 0.00 0.00 3.50
2397 2440 3.142838 GGCCATGGCTGCGATTGT 61.143 61.111 34.70 0.00 41.60 2.71
2472 2515 4.351938 CAAGACCGACCGCACCGA 62.352 66.667 0.00 0.00 0.00 4.69
2594 2640 1.808343 CGTTTTAACCTTTCCTCCCCG 59.192 52.381 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.