Multiple sequence alignment - TraesCS4A01G080700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G080700 chr4A 100.000 5809 0 0 1 5809 83359255 83353447 0.000000e+00 10728.0
1 TraesCS4A01G080700 chr4D 93.779 3199 122 33 1894 5072 380450113 380453254 0.000000e+00 4734.0
2 TraesCS4A01G080700 chr4D 88.119 1515 91 41 1 1470 380448379 380449849 0.000000e+00 1718.0
3 TraesCS4A01G080700 chr4D 87.903 372 27 11 5373 5732 380453511 380453876 6.960000e-114 422.0
4 TraesCS4A01G080700 chr4D 93.590 234 13 2 1518 1751 380449860 380450091 1.200000e-91 348.0
5 TraesCS4A01G080700 chr4D 96.364 55 2 0 5105 5159 404670232 404670178 2.230000e-14 91.6
6 TraesCS4A01G080700 chr4B 91.885 3204 181 42 1893 5072 467903725 467906873 0.000000e+00 4403.0
7 TraesCS4A01G080700 chr4B 86.995 1461 94 52 29 1457 467902070 467903466 0.000000e+00 1557.0
8 TraesCS4A01G080700 chr4B 88.563 341 21 6 5373 5697 467907140 467907478 1.170000e-106 398.0
9 TraesCS4A01G080700 chr4B 94.444 252 12 2 1501 1751 467903461 467903711 2.540000e-103 387.0
10 TraesCS4A01G080700 chr5D 94.030 134 8 0 1759 1892 299073409 299073542 2.740000e-48 204.0
11 TraesCS4A01G080700 chr5D 95.000 60 1 2 5102 5159 498288693 498288634 6.200000e-15 93.5
12 TraesCS4A01G080700 chr5D 98.000 50 1 0 5729 5778 75416348 75416397 2.880000e-13 87.9
13 TraesCS4A01G080700 chr5D 95.918 49 2 0 5730 5778 480858506 480858458 4.830000e-11 80.5
14 TraesCS4A01G080700 chr2A 93.431 137 9 0 1756 1892 317953160 317953296 2.740000e-48 204.0
15 TraesCS4A01G080700 chr2A 90.972 144 10 3 1756 1897 161944620 161944762 2.140000e-44 191.0
16 TraesCS4A01G080700 chr2A 95.918 49 2 0 5730 5778 267885377 267885425 4.830000e-11 80.5
17 TraesCS4A01G080700 chr2D 95.902 122 5 0 1768 1889 512768139 512768260 1.280000e-46 198.0
18 TraesCS4A01G080700 chr2D 91.096 146 10 2 1756 1898 268894473 268894328 1.650000e-45 195.0
19 TraesCS4A01G080700 chr2D 95.082 61 2 1 5105 5164 614645648 614645588 1.720000e-15 95.3
20 TraesCS4A01G080700 chr7A 91.971 137 10 1 1757 1892 68090222 68090358 2.140000e-44 191.0
21 TraesCS4A01G080700 chr7A 100.000 45 0 0 5734 5778 518758522 518758566 3.730000e-12 84.2
22 TraesCS4A01G080700 chr3A 90.909 143 12 1 1757 1898 609951133 609950991 2.140000e-44 191.0
23 TraesCS4A01G080700 chr3D 90.845 142 11 1 1759 1898 467283663 467283522 7.680000e-44 189.0
24 TraesCS4A01G080700 chr3D 95.918 49 2 0 5728 5776 577052026 577052074 4.830000e-11 80.5
25 TraesCS4A01G080700 chr5A 90.210 143 12 2 1750 1892 271053632 271053772 9.940000e-43 185.0
26 TraesCS4A01G080700 chr3B 95.082 61 1 1 5100 5158 591829149 591829209 1.720000e-15 95.3
27 TraesCS4A01G080700 chr3B 96.000 50 2 0 5729 5778 16945989 16945940 1.340000e-11 82.4
28 TraesCS4A01G080700 chr6D 96.364 55 2 0 5105 5159 394209613 394209559 2.230000e-14 91.6
29 TraesCS4A01G080700 chr7B 94.828 58 2 1 5105 5161 561733760 561733817 8.020000e-14 89.8
30 TraesCS4A01G080700 chr1D 96.364 55 1 1 5105 5159 270220742 270220689 8.020000e-14 89.8
31 TraesCS4A01G080700 chr7D 97.959 49 1 0 5730 5778 42016842 42016794 1.040000e-12 86.1
32 TraesCS4A01G080700 chr7D 90.625 64 4 2 5105 5167 31422108 31422046 3.730000e-12 84.2
33 TraesCS4A01G080700 chr6A 87.671 73 6 3 5105 5176 438026180 438026110 1.340000e-11 82.4
34 TraesCS4A01G080700 chr5B 95.918 49 2 0 5730 5778 13697405 13697357 4.830000e-11 80.5
35 TraesCS4A01G080700 chr2B 95.918 49 2 0 5730 5778 269375474 269375426 4.830000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G080700 chr4A 83353447 83359255 5808 True 10728.00 10728 100.00000 1 5809 1 chr4A.!!$R1 5808
1 TraesCS4A01G080700 chr4D 380448379 380453876 5497 False 1805.50 4734 90.84775 1 5732 4 chr4D.!!$F1 5731
2 TraesCS4A01G080700 chr4B 467902070 467907478 5408 False 1686.25 4403 90.47175 29 5697 4 chr4B.!!$F1 5668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 167 0.038599 TGAGGCTGGTAGTACCGTCA 59.961 55.0 14.67 11.19 42.58 4.35 F
1677 1743 0.106708 TCTTTCGTGCAAGTGCCTCT 59.893 50.0 0.00 0.00 41.18 3.69 F
1873 1939 0.034896 GGCTGTTTCCAGGACTCGAA 59.965 55.0 0.00 0.00 39.22 3.71 F
1876 1942 0.395312 TGTTTCCAGGACTCGAACCC 59.605 55.0 0.00 0.12 0.00 4.11 F
1887 1953 0.458543 CTCGAACCCGTGACCTCATG 60.459 60.0 0.00 0.00 37.05 3.07 F
3179 3256 1.126079 GCTGATTACAATGCGCATGC 58.874 50.0 26.09 16.36 43.20 4.06 F
3972 4057 0.176680 AGCGCTGAAGTACCATCTGG 59.823 55.0 10.39 0.00 42.17 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 1889 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.0 37.28 3.67 R
3625 3706 0.035152 TGCTGGCATCTTACCACAGG 60.035 55.000 0.00 0.0 32.49 4.00 R
3802 3886 5.010314 GGCATATGAAATGAAATGGCAGAGA 59.990 40.000 6.97 0.0 42.61 3.10 R
3808 3892 8.805175 TGTTATAGGGCATATGAAATGAAATGG 58.195 33.333 6.97 0.0 0.00 3.16 R
3829 3913 9.606631 TTTGCAAACTGGTATTTTCTTTGTTAT 57.393 25.926 8.05 0.0 0.00 1.89 R
4165 4253 0.622665 AACTGATGAGCCCTCCAAGG 59.377 55.000 0.00 0.0 34.30 3.61 R
5350 5520 0.032813 ATCAGGTTTGGGCATCCCTG 60.033 55.000 3.27 0.0 45.70 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.464870 AAAGGCAAAGCACATGCACA 59.535 45.000 6.64 0.00 45.60 4.57
23 24 1.951181 GCAAAGCACATGCACATGCG 61.951 55.000 16.14 2.41 46.74 4.73
27 28 2.763273 GCACATGCACATGCGCCTA 61.763 57.895 11.63 0.00 45.83 3.93
39 40 2.104331 CGCCTACACCTACGCCTG 59.896 66.667 0.00 0.00 0.00 4.85
40 41 2.412323 CGCCTACACCTACGCCTGA 61.412 63.158 0.00 0.00 0.00 3.86
58 64 2.056481 GAATGGGCTCACTCGCATGC 62.056 60.000 7.91 7.91 39.21 4.06
76 87 2.811317 CGACGGAGCCTCTGTTGC 60.811 66.667 7.79 0.00 35.83 4.17
109 126 0.457853 TATGCAACGCCTCACTCGAC 60.458 55.000 0.00 0.00 0.00 4.20
115 132 0.456312 ACGCCTCACTCGACGAAATC 60.456 55.000 0.00 0.00 0.00 2.17
123 140 4.166523 TCACTCGACGAAATCTGCTTTAG 58.833 43.478 0.00 0.00 0.00 1.85
127 144 3.057104 TCGACGAAATCTGCTTTAGGTGA 60.057 43.478 0.00 0.00 0.00 4.02
128 145 3.304559 CGACGAAATCTGCTTTAGGTGAG 59.695 47.826 0.00 0.00 0.00 3.51
129 146 4.495422 GACGAAATCTGCTTTAGGTGAGA 58.505 43.478 0.00 0.00 0.00 3.27
130 147 4.499183 ACGAAATCTGCTTTAGGTGAGAG 58.501 43.478 0.00 0.00 0.00 3.20
131 148 4.021016 ACGAAATCTGCTTTAGGTGAGAGT 60.021 41.667 0.00 0.00 0.00 3.24
132 149 4.328440 CGAAATCTGCTTTAGGTGAGAGTG 59.672 45.833 0.00 0.00 0.00 3.51
133 150 5.482908 GAAATCTGCTTTAGGTGAGAGTGA 58.517 41.667 0.00 0.00 0.00 3.41
135 152 2.828520 TCTGCTTTAGGTGAGAGTGAGG 59.171 50.000 0.00 0.00 0.00 3.86
136 153 1.276421 TGCTTTAGGTGAGAGTGAGGC 59.724 52.381 0.00 0.00 0.00 4.70
137 154 1.552792 GCTTTAGGTGAGAGTGAGGCT 59.447 52.381 0.00 0.00 0.00 4.58
150 167 0.038599 TGAGGCTGGTAGTACCGTCA 59.961 55.000 14.67 11.19 42.58 4.35
151 168 0.455005 GAGGCTGGTAGTACCGTCAC 59.545 60.000 14.67 6.22 42.58 3.67
236 263 1.202533 CCATGCTACTACCAAGTCCCG 60.203 57.143 0.00 0.00 37.15 5.14
240 267 1.134877 GCTACTACCAAGTCCCGGAAC 60.135 57.143 0.73 0.00 37.15 3.62
252 279 3.394606 AGTCCCGGAACCATTATTATGCT 59.605 43.478 0.73 0.00 0.00 3.79
253 280 3.502211 GTCCCGGAACCATTATTATGCTG 59.498 47.826 0.73 0.00 0.00 4.41
254 281 3.392947 TCCCGGAACCATTATTATGCTGA 59.607 43.478 0.73 0.00 0.00 4.26
255 282 3.753272 CCCGGAACCATTATTATGCTGAG 59.247 47.826 0.73 0.00 0.00 3.35
294 321 3.718815 GACCGAATTATCACCTCACCTC 58.281 50.000 0.00 0.00 0.00 3.85
295 322 3.104512 ACCGAATTATCACCTCACCTCA 58.895 45.455 0.00 0.00 0.00 3.86
296 323 3.118738 ACCGAATTATCACCTCACCTCAC 60.119 47.826 0.00 0.00 0.00 3.51
297 324 3.458189 CGAATTATCACCTCACCTCACC 58.542 50.000 0.00 0.00 0.00 4.02
298 325 3.133003 CGAATTATCACCTCACCTCACCT 59.867 47.826 0.00 0.00 0.00 4.00
316 343 0.591236 CTGACGCACAACCAAAACGG 60.591 55.000 0.00 0.00 42.50 4.44
332 359 5.736824 CCAAAACGGCATTTTCTTTTGAAAC 59.263 36.000 5.48 0.00 46.80 2.78
333 360 6.310197 CAAAACGGCATTTTCTTTTGAAACA 58.690 32.000 0.00 0.00 46.80 2.83
365 393 4.214332 ACCTTTTCTTGATTTCGACAGAGC 59.786 41.667 0.00 0.00 0.00 4.09
372 400 6.223852 TCTTGATTTCGACAGAGCTTAAACT 58.776 36.000 0.00 0.00 0.00 2.66
375 403 8.547967 TTGATTTCGACAGAGCTTAAACTATT 57.452 30.769 0.00 0.00 0.00 1.73
376 404 8.547967 TGATTTCGACAGAGCTTAAACTATTT 57.452 30.769 0.00 0.00 0.00 1.40
378 406 6.963049 TTCGACAGAGCTTAAACTATTTCC 57.037 37.500 0.00 0.00 0.00 3.13
382 410 4.291249 ACAGAGCTTAAACTATTTCCCCCA 59.709 41.667 0.00 0.00 0.00 4.96
431 459 1.044231 TGCTAACGGCCGGATAAGGA 61.044 55.000 31.76 18.35 40.92 3.36
445 473 4.308265 GGATAAGGAGAATGAAGTACGGC 58.692 47.826 0.00 0.00 0.00 5.68
457 485 5.117355 TGAAGTACGGCAGCATATACTAC 57.883 43.478 0.00 0.00 0.00 2.73
458 486 4.825634 TGAAGTACGGCAGCATATACTACT 59.174 41.667 0.00 0.00 0.00 2.57
459 487 5.999600 TGAAGTACGGCAGCATATACTACTA 59.000 40.000 0.00 0.00 0.00 1.82
461 489 5.558818 AGTACGGCAGCATATACTACTACT 58.441 41.667 0.00 0.00 0.00 2.57
462 490 6.705302 AGTACGGCAGCATATACTACTACTA 58.295 40.000 0.00 0.00 0.00 1.82
465 493 7.551035 ACGGCAGCATATACTACTACTATAC 57.449 40.000 0.00 0.00 0.00 1.47
466 494 6.257411 ACGGCAGCATATACTACTACTATACG 59.743 42.308 0.00 0.00 0.00 3.06
467 495 6.478016 CGGCAGCATATACTACTACTATACGA 59.522 42.308 0.00 0.00 0.00 3.43
468 496 7.306690 CGGCAGCATATACTACTACTATACGAG 60.307 44.444 0.00 0.00 0.00 4.18
469 497 7.346695 GCAGCATATACTACTACTATACGAGC 58.653 42.308 0.00 0.00 0.00 5.03
506 534 2.894000 CGTACACAGCGTTGAAAATTCG 59.106 45.455 6.16 0.00 0.00 3.34
639 675 6.092259 CCTGGTAAAATAAGGAAACAGAGACG 59.908 42.308 0.00 0.00 32.43 4.18
642 678 5.358298 AAAATAAGGAAACAGAGACGCAC 57.642 39.130 0.00 0.00 0.00 5.34
720 756 1.711060 GACGTGCTCTCCTCTCCTCG 61.711 65.000 0.00 0.00 0.00 4.63
824 867 1.690633 CCCTAGAGGCAGGCAGGAA 60.691 63.158 0.00 0.00 34.02 3.36
911 954 0.840722 TCCCTCCTCACCCAGGTTTC 60.841 60.000 0.00 0.00 43.95 2.78
922 965 2.603776 AGGTTTCCCTCGCCGTCT 60.604 61.111 0.00 0.00 35.62 4.18
953 996 2.262915 GGTGGCGTCCTCTGACTG 59.737 66.667 0.00 0.00 39.47 3.51
954 997 2.276116 GGTGGCGTCCTCTGACTGA 61.276 63.158 0.00 0.00 39.47 3.41
955 998 1.080434 GTGGCGTCCTCTGACTGAC 60.080 63.158 0.00 0.00 39.47 3.51
956 999 2.276116 TGGCGTCCTCTGACTGACC 61.276 63.158 0.00 0.00 39.47 4.02
1046 1089 4.778143 CCTGTAAGCGGCCGCCTT 62.778 66.667 44.47 35.29 43.17 4.35
1111 1154 3.421919 AATTTGTCATTTTGGGCCTGG 57.578 42.857 4.53 0.00 0.00 4.45
1126 1169 2.095461 GCCTGGAAAGAAACTGATCCC 58.905 52.381 0.00 0.00 0.00 3.85
1315 1368 1.727511 TACGGGCCGGACGTATTCAG 61.728 60.000 31.78 0.00 44.93 3.02
1324 1377 4.569564 GCCGGACGTATTCAGAAGTTTATT 59.430 41.667 5.05 0.00 0.00 1.40
1325 1378 5.064325 GCCGGACGTATTCAGAAGTTTATTT 59.936 40.000 5.05 0.00 0.00 1.40
1326 1379 6.256321 GCCGGACGTATTCAGAAGTTTATTTA 59.744 38.462 5.05 0.00 0.00 1.40
1373 1435 2.548920 GGTCGAGGAGCATGGGATAAAG 60.549 54.545 0.00 0.00 0.00 1.85
1411 1473 4.273480 CACAACGGTCAAATGTTCTCTTCT 59.727 41.667 0.00 0.00 0.00 2.85
1417 1479 6.591834 ACGGTCAAATGTTCTCTTCTCTTATG 59.408 38.462 0.00 0.00 0.00 1.90
1419 1481 7.201478 CGGTCAAATGTTCTCTTCTCTTATGTC 60.201 40.741 0.00 0.00 0.00 3.06
1478 1543 9.102757 TGTCTGATAGTCAATTTCTAGAAATGC 57.897 33.333 27.25 20.08 40.57 3.56
1480 1545 9.896645 TCTGATAGTCAATTTCTAGAAATGCTT 57.103 29.630 27.25 12.99 40.57 3.91
1484 1549 7.872113 AGTCAATTTCTAGAAATGCTTAGGG 57.128 36.000 27.25 13.10 40.57 3.53
1485 1550 7.406104 AGTCAATTTCTAGAAATGCTTAGGGT 58.594 34.615 27.25 9.67 40.57 4.34
1486 1551 7.554476 AGTCAATTTCTAGAAATGCTTAGGGTC 59.446 37.037 27.25 12.43 40.57 4.46
1487 1552 6.538742 TCAATTTCTAGAAATGCTTAGGGTCG 59.461 38.462 27.25 9.21 40.57 4.79
1488 1553 4.402056 TTCTAGAAATGCTTAGGGTCGG 57.598 45.455 1.68 0.00 0.00 4.79
1489 1554 3.638860 TCTAGAAATGCTTAGGGTCGGA 58.361 45.455 0.00 0.00 0.00 4.55
1490 1555 4.223953 TCTAGAAATGCTTAGGGTCGGAT 58.776 43.478 0.00 0.00 0.00 4.18
1491 1556 5.391256 TCTAGAAATGCTTAGGGTCGGATA 58.609 41.667 0.00 0.00 0.00 2.59
1492 1557 5.836898 TCTAGAAATGCTTAGGGTCGGATAA 59.163 40.000 0.00 0.00 0.00 1.75
1493 1558 5.568620 AGAAATGCTTAGGGTCGGATAAT 57.431 39.130 0.00 0.00 0.00 1.28
1494 1559 5.308825 AGAAATGCTTAGGGTCGGATAATG 58.691 41.667 0.00 0.00 0.00 1.90
1495 1560 3.703001 ATGCTTAGGGTCGGATAATGG 57.297 47.619 0.00 0.00 0.00 3.16
1496 1561 2.684943 TGCTTAGGGTCGGATAATGGA 58.315 47.619 0.00 0.00 0.00 3.41
1497 1562 3.042682 TGCTTAGGGTCGGATAATGGAA 58.957 45.455 0.00 0.00 0.00 3.53
1498 1563 3.650942 TGCTTAGGGTCGGATAATGGAAT 59.349 43.478 0.00 0.00 0.00 3.01
1499 1564 4.841813 TGCTTAGGGTCGGATAATGGAATA 59.158 41.667 0.00 0.00 0.00 1.75
1500 1565 5.487488 TGCTTAGGGTCGGATAATGGAATAT 59.513 40.000 0.00 0.00 0.00 1.28
1501 1566 6.012858 TGCTTAGGGTCGGATAATGGAATATT 60.013 38.462 0.00 0.00 0.00 1.28
1502 1567 6.316390 GCTTAGGGTCGGATAATGGAATATTG 59.684 42.308 0.00 0.00 0.00 1.90
1503 1568 5.843019 AGGGTCGGATAATGGAATATTGT 57.157 39.130 0.00 0.00 0.00 2.71
1504 1569 5.805728 AGGGTCGGATAATGGAATATTGTC 58.194 41.667 0.00 0.00 0.00 3.18
1505 1570 5.548056 AGGGTCGGATAATGGAATATTGTCT 59.452 40.000 0.00 0.00 0.00 3.41
1506 1571 6.044404 AGGGTCGGATAATGGAATATTGTCTT 59.956 38.462 0.00 0.00 0.00 3.01
1507 1572 6.149474 GGGTCGGATAATGGAATATTGTCTTG 59.851 42.308 0.00 0.00 0.00 3.02
1508 1573 6.149474 GGTCGGATAATGGAATATTGTCTTGG 59.851 42.308 0.00 0.00 0.00 3.61
1509 1574 5.705441 TCGGATAATGGAATATTGTCTTGGC 59.295 40.000 0.00 0.00 0.00 4.52
1510 1575 5.473162 CGGATAATGGAATATTGTCTTGGCA 59.527 40.000 0.00 0.00 0.00 4.92
1511 1576 6.151648 CGGATAATGGAATATTGTCTTGGCAT 59.848 38.462 0.00 0.00 0.00 4.40
1540 1605 8.592809 TGATTTAATTTGGTTATCTGCCAGTTT 58.407 29.630 0.00 0.00 37.31 2.66
1677 1743 0.106708 TCTTTCGTGCAAGTGCCTCT 59.893 50.000 0.00 0.00 41.18 3.69
1691 1757 3.073650 AGTGCCTCTGAAAAATCAGTCCT 59.926 43.478 5.80 0.00 38.75 3.85
1751 1817 5.260424 TCAAAATGGCTAATTGCTCCACTA 58.740 37.500 0.00 0.00 42.39 2.74
1752 1818 5.357878 TCAAAATGGCTAATTGCTCCACTAG 59.642 40.000 0.00 0.00 42.39 2.57
1793 1859 3.466791 ATGCGCATAGCTCCCGCTT 62.467 57.895 24.02 14.54 46.47 4.68
1794 1860 3.643978 GCGCATAGCTCCCGCTTG 61.644 66.667 15.55 0.00 46.47 4.01
1795 1861 3.643978 CGCATAGCTCCCGCTTGC 61.644 66.667 0.00 9.72 46.47 4.01
1796 1862 2.514592 GCATAGCTCCCGCTTGCA 60.515 61.111 0.00 0.00 46.47 4.08
1797 1863 2.828128 GCATAGCTCCCGCTTGCAC 61.828 63.158 0.00 0.00 46.47 4.57
1798 1864 1.450134 CATAGCTCCCGCTTGCACA 60.450 57.895 0.00 0.00 46.47 4.57
1799 1865 1.153289 ATAGCTCCCGCTTGCACAG 60.153 57.895 0.00 0.00 46.47 3.66
1800 1866 2.599645 ATAGCTCCCGCTTGCACAGG 62.600 60.000 0.00 0.00 46.47 4.00
1802 1868 4.335647 CTCCCGCTTGCACAGGGT 62.336 66.667 17.06 0.00 45.27 4.34
1803 1869 4.329545 TCCCGCTTGCACAGGGTC 62.330 66.667 17.06 0.00 45.27 4.46
1806 1872 4.680237 CGCTTGCACAGGGTCCGA 62.680 66.667 0.00 0.00 0.00 4.55
1807 1873 3.050275 GCTTGCACAGGGTCCGAC 61.050 66.667 0.00 0.00 0.00 4.79
1808 1874 2.358737 CTTGCACAGGGTCCGACC 60.359 66.667 9.30 9.30 37.60 4.79
1809 1875 3.164977 TTGCACAGGGTCCGACCA 61.165 61.111 19.43 0.00 41.02 4.02
1810 1876 3.469863 TTGCACAGGGTCCGACCAC 62.470 63.158 19.43 8.70 41.02 4.16
1811 1877 3.626924 GCACAGGGTCCGACCACT 61.627 66.667 19.43 10.80 41.02 4.00
1812 1878 3.148084 CACAGGGTCCGACCACTT 58.852 61.111 19.43 1.42 41.02 3.16
1813 1879 1.450211 CACAGGGTCCGACCACTTT 59.550 57.895 19.43 4.64 41.02 2.66
1814 1880 0.884704 CACAGGGTCCGACCACTTTG 60.885 60.000 19.43 12.40 41.02 2.77
1815 1881 1.302511 CAGGGTCCGACCACTTTGG 60.303 63.158 19.43 0.00 41.02 3.28
1816 1882 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1817 1883 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1827 1893 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1828 1894 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1829 1895 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1830 1896 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1831 1897 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1832 1898 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1833 1899 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1834 1900 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1835 1901 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1836 1902 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1837 1903 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1838 1904 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1839 1905 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1840 1906 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1841 1907 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1842 1908 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1843 1909 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1844 1910 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1845 1911 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1846 1912 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1847 1913 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1848 1914 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1849 1915 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1850 1916 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1851 1917 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1852 1918 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1853 1919 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1865 1931 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1866 1932 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1867 1933 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1868 1934 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1869 1935 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1870 1936 0.980423 AGAGGCTGTTTCCAGGACTC 59.020 55.000 0.00 0.00 39.22 3.36
1871 1937 0.390472 GAGGCTGTTTCCAGGACTCG 60.390 60.000 0.00 0.00 39.22 4.18
1872 1938 0.832135 AGGCTGTTTCCAGGACTCGA 60.832 55.000 0.00 0.00 39.22 4.04
1873 1939 0.034896 GGCTGTTTCCAGGACTCGAA 59.965 55.000 0.00 0.00 39.22 3.71
1874 1940 1.149148 GCTGTTTCCAGGACTCGAAC 58.851 55.000 0.00 0.00 39.22 3.95
1875 1941 1.797025 CTGTTTCCAGGACTCGAACC 58.203 55.000 0.00 0.64 34.90 3.62
1876 1942 0.395312 TGTTTCCAGGACTCGAACCC 59.605 55.000 0.00 0.12 0.00 4.11
1877 1943 0.669625 GTTTCCAGGACTCGAACCCG 60.670 60.000 0.00 0.00 37.07 5.28
1878 1944 1.117142 TTTCCAGGACTCGAACCCGT 61.117 55.000 0.00 0.00 37.05 5.28
1879 1945 1.812686 TTCCAGGACTCGAACCCGTG 61.813 60.000 0.00 0.64 37.05 4.94
1880 1946 2.273179 CCAGGACTCGAACCCGTGA 61.273 63.158 4.92 0.00 37.05 4.35
1881 1947 1.080705 CAGGACTCGAACCCGTGAC 60.081 63.158 4.92 0.00 37.05 3.67
1882 1948 2.260743 GGACTCGAACCCGTGACC 59.739 66.667 0.00 0.00 37.08 4.02
1883 1949 2.273912 GGACTCGAACCCGTGACCT 61.274 63.158 0.00 0.00 39.62 3.85
1884 1950 1.212229 GACTCGAACCCGTGACCTC 59.788 63.158 0.00 0.00 37.05 3.85
1885 1951 1.521450 GACTCGAACCCGTGACCTCA 61.521 60.000 0.00 0.00 37.05 3.86
1886 1952 0.898789 ACTCGAACCCGTGACCTCAT 60.899 55.000 0.00 0.00 37.05 2.90
1887 1953 0.458543 CTCGAACCCGTGACCTCATG 60.459 60.000 0.00 0.00 37.05 3.07
1945 2011 8.352201 CAATTTCTTCTTGTAAGTCCAATCACA 58.648 33.333 0.00 0.00 0.00 3.58
1994 2060 7.713507 GCAGGGATATTGTGTTTATAGTGTGTA 59.286 37.037 0.00 0.00 0.00 2.90
1995 2061 9.778741 CAGGGATATTGTGTTTATAGTGTGTAT 57.221 33.333 0.00 0.00 0.00 2.29
2180 2246 6.558775 AGGTGGCTCCTTCAGTTATATGATTA 59.441 38.462 1.37 0.00 45.67 1.75
2181 2247 7.238514 AGGTGGCTCCTTCAGTTATATGATTAT 59.761 37.037 1.37 0.00 45.67 1.28
2182 2248 7.885399 GGTGGCTCCTTCAGTTATATGATTATT 59.115 37.037 0.00 0.00 0.00 1.40
2586 2660 3.379372 AGCATGAGAATGAAATTGACCGG 59.621 43.478 0.00 0.00 36.07 5.28
2807 2884 6.015918 ACCAATTGATGTATTTTCACCCTGA 58.984 36.000 7.12 0.00 0.00 3.86
2891 2968 4.600032 GCACATTGCATGATAAACGATGA 58.400 39.130 0.00 0.00 44.26 2.92
2923 3000 6.040391 GCATGTTATATGGTGGCCTCTAAAAA 59.960 38.462 3.32 0.00 0.00 1.94
2975 3052 5.144832 TCTCTGTCCCGTGATAATAATCCA 58.855 41.667 0.00 0.00 0.00 3.41
2995 3072 1.636148 ATGGCTCAAGTGTTTGGCAT 58.364 45.000 0.00 0.00 40.15 4.40
3090 3167 6.475504 TCTTGTCTCTTTTGGATTAGCATCA 58.524 36.000 0.00 0.00 0.00 3.07
3179 3256 1.126079 GCTGATTACAATGCGCATGC 58.874 50.000 26.09 16.36 43.20 4.06
3314 3391 3.198635 TGAGTTCTTCTTGAGCCATAGGG 59.801 47.826 0.00 0.00 37.18 3.53
3334 3411 4.289672 AGGGTAAATTTCTGAAGCCTCTCA 59.710 41.667 4.00 0.00 34.88 3.27
3335 3412 5.010282 GGGTAAATTTCTGAAGCCTCTCAA 58.990 41.667 0.00 0.00 0.00 3.02
3625 3706 7.435192 GGTAGGATTTTACATAATGCAAACTGC 59.565 37.037 0.00 0.00 45.29 4.40
3800 3884 9.546909 GTCACTCAGTTTGACAAATATATGTTG 57.453 33.333 3.49 0.00 42.58 3.33
3801 3885 9.283768 TCACTCAGTTTGACAAATATATGTTGT 57.716 29.630 3.49 10.93 41.84 3.32
3802 3886 9.897744 CACTCAGTTTGACAAATATATGTTGTT 57.102 29.630 3.49 0.00 39.29 2.83
3808 3892 9.065871 GTTTGACAAATATATGTTGTTCTCTGC 57.934 33.333 3.49 0.00 39.29 4.26
3817 3901 5.733620 ATGTTGTTCTCTGCCATTTCATT 57.266 34.783 0.00 0.00 0.00 2.57
3829 3913 5.146298 TGCCATTTCATTTCATATGCCCTA 58.854 37.500 0.00 0.00 0.00 3.53
3972 4057 0.176680 AGCGCTGAAGTACCATCTGG 59.823 55.000 10.39 0.00 42.17 3.86
3990 4075 5.165961 TCTGGAGTTAAACCTCAATCCTG 57.834 43.478 0.00 0.00 32.91 3.86
4093 4178 9.655769 CATGTTGTACAATCTAATGCATAAGAC 57.344 33.333 12.26 0.00 0.00 3.01
4137 4222 7.616313 TGGCCGAAGATTGGTTTTAAATAAAT 58.384 30.769 0.00 0.00 0.00 1.40
4237 4325 6.522946 AGAGTCAACATGATATCCATCTGTG 58.477 40.000 0.00 0.00 31.94 3.66
4607 4699 4.756458 GCTCCAGCTGCTGACGCT 62.756 66.667 30.10 0.00 38.49 5.07
4685 4777 3.219928 ATGGCGATCGACGAGGCT 61.220 61.111 21.57 0.00 45.77 4.58
4941 5036 4.036262 CCAATTGGTCGTTCTGTTTCAGAA 59.964 41.667 16.90 7.92 46.50 3.02
4942 5037 7.893894 TCCAATTGGTCGTTCTGTTTCAGAAG 61.894 42.308 23.76 7.28 42.32 2.85
5072 5169 4.379603 GCTACGACCTACGAATGCATCTAT 60.380 45.833 0.00 0.00 45.77 1.98
5074 5171 3.057456 ACGACCTACGAATGCATCTATCC 60.057 47.826 0.00 0.00 45.77 2.59
5076 5173 4.395231 CGACCTACGAATGCATCTATCCTA 59.605 45.833 0.00 0.00 45.77 2.94
5077 5174 5.642686 GACCTACGAATGCATCTATCCTAC 58.357 45.833 0.00 0.00 0.00 3.18
5079 5176 5.184096 ACCTACGAATGCATCTATCCTACTG 59.816 44.000 0.00 0.00 0.00 2.74
5082 5179 4.172505 CGAATGCATCTATCCTACTGCTC 58.827 47.826 0.00 0.00 35.66 4.26
5083 5180 4.082300 CGAATGCATCTATCCTACTGCTCT 60.082 45.833 0.00 0.00 35.66 4.09
5084 5181 5.404466 AATGCATCTATCCTACTGCTCTC 57.596 43.478 0.00 0.00 35.66 3.20
5085 5182 4.111255 TGCATCTATCCTACTGCTCTCT 57.889 45.455 0.00 0.00 35.66 3.10
5086 5183 4.478203 TGCATCTATCCTACTGCTCTCTT 58.522 43.478 0.00 0.00 35.66 2.85
5102 5208 4.262938 GCTCTCTTTGGGTAAGGTAGTGTT 60.263 45.833 0.00 0.00 34.46 3.32
5103 5209 5.745181 GCTCTCTTTGGGTAAGGTAGTGTTT 60.745 44.000 0.00 0.00 34.46 2.83
5104 5210 5.617252 TCTCTTTGGGTAAGGTAGTGTTTG 58.383 41.667 0.00 0.00 34.46 2.93
5105 5211 5.131475 TCTCTTTGGGTAAGGTAGTGTTTGT 59.869 40.000 0.00 0.00 34.46 2.83
5106 5212 5.127491 TCTTTGGGTAAGGTAGTGTTTGTG 58.873 41.667 0.00 0.00 34.46 3.33
5107 5213 2.853705 TGGGTAAGGTAGTGTTTGTGC 58.146 47.619 0.00 0.00 0.00 4.57
5108 5214 2.440253 TGGGTAAGGTAGTGTTTGTGCT 59.560 45.455 0.00 0.00 0.00 4.40
5109 5215 3.117813 TGGGTAAGGTAGTGTTTGTGCTT 60.118 43.478 0.00 0.00 0.00 3.91
5110 5216 3.887110 GGGTAAGGTAGTGTTTGTGCTTT 59.113 43.478 0.00 0.00 0.00 3.51
5111 5217 4.261447 GGGTAAGGTAGTGTTTGTGCTTTG 60.261 45.833 0.00 0.00 0.00 2.77
5112 5218 4.337274 GGTAAGGTAGTGTTTGTGCTTTGT 59.663 41.667 0.00 0.00 0.00 2.83
5113 5219 5.528320 GGTAAGGTAGTGTTTGTGCTTTGTA 59.472 40.000 0.00 0.00 0.00 2.41
5114 5220 5.494632 AAGGTAGTGTTTGTGCTTTGTAC 57.505 39.130 0.00 0.00 0.00 2.90
5115 5221 4.777463 AGGTAGTGTTTGTGCTTTGTACT 58.223 39.130 0.00 0.00 0.00 2.73
5116 5222 5.190677 AGGTAGTGTTTGTGCTTTGTACTT 58.809 37.500 0.00 0.00 0.00 2.24
5117 5223 5.296035 AGGTAGTGTTTGTGCTTTGTACTTC 59.704 40.000 0.00 0.00 0.00 3.01
5118 5224 4.632538 AGTGTTTGTGCTTTGTACTTCC 57.367 40.909 0.00 0.00 0.00 3.46
5119 5225 3.064820 AGTGTTTGTGCTTTGTACTTCCG 59.935 43.478 0.00 0.00 0.00 4.30
5120 5226 2.356382 TGTTTGTGCTTTGTACTTCCGG 59.644 45.455 0.00 0.00 0.00 5.14
5121 5227 2.335316 TTGTGCTTTGTACTTCCGGT 57.665 45.000 0.00 0.00 0.00 5.28
5122 5228 1.588674 TGTGCTTTGTACTTCCGGTG 58.411 50.000 0.00 0.00 0.00 4.94
5123 5229 1.139256 TGTGCTTTGTACTTCCGGTGA 59.861 47.619 0.00 0.00 0.00 4.02
5124 5230 2.215196 GTGCTTTGTACTTCCGGTGAA 58.785 47.619 0.00 0.00 0.00 3.18
5125 5231 2.812011 GTGCTTTGTACTTCCGGTGAAT 59.188 45.455 0.00 0.00 0.00 2.57
5126 5232 3.071479 TGCTTTGTACTTCCGGTGAATC 58.929 45.455 0.00 0.00 0.00 2.52
5127 5233 3.244422 TGCTTTGTACTTCCGGTGAATCT 60.244 43.478 0.00 0.00 0.00 2.40
5128 5234 3.751698 GCTTTGTACTTCCGGTGAATCTT 59.248 43.478 0.00 0.00 0.00 2.40
5129 5235 4.215613 GCTTTGTACTTCCGGTGAATCTTT 59.784 41.667 0.00 0.00 0.00 2.52
5130 5236 5.410439 GCTTTGTACTTCCGGTGAATCTTTA 59.590 40.000 0.00 0.00 0.00 1.85
5131 5237 6.093633 GCTTTGTACTTCCGGTGAATCTTTAT 59.906 38.462 0.00 0.00 0.00 1.40
5132 5238 7.279313 GCTTTGTACTTCCGGTGAATCTTTATA 59.721 37.037 0.00 0.00 0.00 0.98
5133 5239 9.158233 CTTTGTACTTCCGGTGAATCTTTATAA 57.842 33.333 0.00 0.00 0.00 0.98
5134 5240 9.675464 TTTGTACTTCCGGTGAATCTTTATAAT 57.325 29.630 0.00 0.00 0.00 1.28
5136 5242 9.976511 TGTACTTCCGGTGAATCTTTATAATAG 57.023 33.333 0.00 0.00 0.00 1.73
5139 5245 9.930693 ACTTCCGGTGAATCTTTATAATAGATC 57.069 33.333 0.00 0.00 31.28 2.75
5141 5247 9.929180 TTCCGGTGAATCTTTATAATAGATCTG 57.071 33.333 5.18 0.00 31.28 2.90
5142 5248 9.309224 TCCGGTGAATCTTTATAATAGATCTGA 57.691 33.333 5.18 0.00 31.28 3.27
5196 5302 2.813061 GCAATCGGCAACTGCATAATT 58.187 42.857 3.76 0.00 44.36 1.40
5202 5308 3.065233 TCGGCAACTGCATAATTGACATC 59.935 43.478 10.85 0.00 44.36 3.06
5203 5309 3.065786 CGGCAACTGCATAATTGACATCT 59.934 43.478 10.85 0.00 44.36 2.90
5205 5311 5.039333 GGCAACTGCATAATTGACATCTTC 58.961 41.667 3.76 0.00 44.36 2.87
5206 5312 5.163581 GGCAACTGCATAATTGACATCTTCT 60.164 40.000 3.76 0.00 44.36 2.85
5207 5313 5.742453 GCAACTGCATAATTGACATCTTCTG 59.258 40.000 9.10 0.00 41.59 3.02
5208 5314 5.496133 ACTGCATAATTGACATCTTCTGC 57.504 39.130 0.00 0.00 0.00 4.26
5209 5315 4.337555 ACTGCATAATTGACATCTTCTGCC 59.662 41.667 0.00 0.00 0.00 4.85
5211 5317 4.577693 TGCATAATTGACATCTTCTGCCTC 59.422 41.667 0.00 0.00 0.00 4.70
5214 5320 3.557228 ATTGACATCTTCTGCCTCTCC 57.443 47.619 0.00 0.00 0.00 3.71
5216 5322 2.544721 TGACATCTTCTGCCTCTCCTT 58.455 47.619 0.00 0.00 0.00 3.36
5220 5326 2.191128 TCTTCTGCCTCTCCTTTTGC 57.809 50.000 0.00 0.00 0.00 3.68
5221 5327 1.421268 TCTTCTGCCTCTCCTTTTGCA 59.579 47.619 0.00 0.00 0.00 4.08
5222 5328 2.040813 TCTTCTGCCTCTCCTTTTGCAT 59.959 45.455 0.00 0.00 32.53 3.96
5223 5329 1.830279 TCTGCCTCTCCTTTTGCATG 58.170 50.000 0.00 0.00 32.53 4.06
5224 5330 1.352017 TCTGCCTCTCCTTTTGCATGA 59.648 47.619 0.00 0.00 32.53 3.07
5225 5331 2.165167 CTGCCTCTCCTTTTGCATGAA 58.835 47.619 0.00 0.00 32.53 2.57
5226 5332 1.888512 TGCCTCTCCTTTTGCATGAAC 59.111 47.619 0.00 0.00 0.00 3.18
5227 5333 2.165998 GCCTCTCCTTTTGCATGAACT 58.834 47.619 0.00 0.00 0.00 3.01
5228 5334 2.163211 GCCTCTCCTTTTGCATGAACTC 59.837 50.000 0.00 0.00 0.00 3.01
5229 5335 3.683802 CCTCTCCTTTTGCATGAACTCT 58.316 45.455 0.00 0.00 0.00 3.24
5230 5336 3.439476 CCTCTCCTTTTGCATGAACTCTG 59.561 47.826 0.00 0.00 0.00 3.35
5231 5337 3.415212 TCTCCTTTTGCATGAACTCTGG 58.585 45.455 0.00 0.00 0.00 3.86
5232 5338 3.152341 CTCCTTTTGCATGAACTCTGGT 58.848 45.455 0.00 0.00 0.00 4.00
5233 5339 3.565307 TCCTTTTGCATGAACTCTGGTT 58.435 40.909 0.00 0.00 38.52 3.67
5234 5340 4.724399 TCCTTTTGCATGAACTCTGGTTA 58.276 39.130 0.00 0.00 35.58 2.85
5235 5341 4.761739 TCCTTTTGCATGAACTCTGGTTAG 59.238 41.667 0.00 0.00 35.58 2.34
5236 5342 4.479619 CTTTTGCATGAACTCTGGTTAGC 58.520 43.478 0.00 0.00 35.58 3.09
5237 5343 3.423539 TTGCATGAACTCTGGTTAGCT 57.576 42.857 0.00 0.00 35.58 3.32
5238 5344 2.703416 TGCATGAACTCTGGTTAGCTG 58.297 47.619 0.00 0.00 35.58 4.24
5239 5345 1.399791 GCATGAACTCTGGTTAGCTGC 59.600 52.381 0.00 0.00 35.58 5.25
5240 5346 2.703416 CATGAACTCTGGTTAGCTGCA 58.297 47.619 1.02 0.00 35.58 4.41
5241 5347 2.462456 TGAACTCTGGTTAGCTGCAG 57.538 50.000 10.11 10.11 35.58 4.41
5242 5348 1.082690 GAACTCTGGTTAGCTGCAGC 58.917 55.000 31.53 31.53 37.24 5.25
5243 5349 0.397941 AACTCTGGTTAGCTGCAGCA 59.602 50.000 38.24 22.31 45.16 4.41
5244 5350 0.397941 ACTCTGGTTAGCTGCAGCAA 59.602 50.000 38.24 26.32 45.16 3.91
5245 5351 1.004044 ACTCTGGTTAGCTGCAGCAAT 59.996 47.619 38.24 22.64 45.16 3.56
5246 5352 2.089980 CTCTGGTTAGCTGCAGCAATT 58.910 47.619 38.24 21.89 45.16 2.32
5247 5353 1.814394 TCTGGTTAGCTGCAGCAATTG 59.186 47.619 38.24 22.19 45.16 2.32
5257 5363 2.890612 CAGCAATTGCATCTCCCCA 58.109 52.632 30.89 0.00 45.16 4.96
5258 5364 1.410004 CAGCAATTGCATCTCCCCAT 58.590 50.000 30.89 5.18 45.16 4.00
5259 5365 1.068588 CAGCAATTGCATCTCCCCATG 59.931 52.381 30.89 13.86 45.16 3.66
5273 5379 4.165950 TCTCCCCATGCATACAACATTAGT 59.834 41.667 0.00 0.00 0.00 2.24
5274 5380 4.206375 TCCCCATGCATACAACATTAGTG 58.794 43.478 0.00 0.00 0.00 2.74
5302 5449 2.228103 GGAAACGGCTACTCAAAAAGGG 59.772 50.000 0.00 0.00 0.00 3.95
5310 5480 4.575236 GGCTACTCAAAAAGGGTATAGTGC 59.425 45.833 0.00 0.00 0.00 4.40
5311 5481 5.183228 GCTACTCAAAAAGGGTATAGTGCA 58.817 41.667 0.00 0.00 0.00 4.57
5312 5482 5.294552 GCTACTCAAAAAGGGTATAGTGCAG 59.705 44.000 0.00 0.00 0.00 4.41
5313 5483 5.242795 ACTCAAAAAGGGTATAGTGCAGT 57.757 39.130 0.00 0.00 0.00 4.40
5314 5484 5.631119 ACTCAAAAAGGGTATAGTGCAGTT 58.369 37.500 0.00 0.00 0.00 3.16
5315 5485 5.473504 ACTCAAAAAGGGTATAGTGCAGTTG 59.526 40.000 0.00 0.00 0.00 3.16
5317 5487 6.245408 TCAAAAAGGGTATAGTGCAGTTGAT 58.755 36.000 0.00 0.00 0.00 2.57
5318 5488 6.719370 TCAAAAAGGGTATAGTGCAGTTGATT 59.281 34.615 0.00 0.00 0.00 2.57
5319 5489 6.515272 AAAAGGGTATAGTGCAGTTGATTG 57.485 37.500 0.00 0.00 0.00 2.67
5320 5490 4.844349 AGGGTATAGTGCAGTTGATTGT 57.156 40.909 0.00 0.00 0.00 2.71
5321 5491 4.517285 AGGGTATAGTGCAGTTGATTGTG 58.483 43.478 0.00 0.00 0.00 3.33
5322 5492 3.065371 GGGTATAGTGCAGTTGATTGTGC 59.935 47.826 0.00 0.00 40.29 4.57
5323 5493 3.941483 GGTATAGTGCAGTTGATTGTGCT 59.059 43.478 0.00 0.00 40.54 4.40
5324 5494 4.201851 GGTATAGTGCAGTTGATTGTGCTG 60.202 45.833 0.00 0.00 40.54 4.41
5325 5495 1.683943 AGTGCAGTTGATTGTGCTGT 58.316 45.000 0.00 0.00 40.54 4.40
5326 5496 1.335810 AGTGCAGTTGATTGTGCTGTG 59.664 47.619 0.00 0.00 40.54 3.66
5327 5497 0.031043 TGCAGTTGATTGTGCTGTGC 59.969 50.000 0.00 0.00 40.54 4.57
5328 5498 0.031043 GCAGTTGATTGTGCTGTGCA 59.969 50.000 0.00 0.00 36.71 4.57
5337 5507 3.408755 TGCTGTGCACGTGTCAAG 58.591 55.556 18.38 12.62 31.71 3.02
5338 5508 1.153469 TGCTGTGCACGTGTCAAGA 60.153 52.632 18.38 5.32 31.71 3.02
5339 5509 1.153597 TGCTGTGCACGTGTCAAGAG 61.154 55.000 18.38 14.37 31.71 2.85
5340 5510 0.875908 GCTGTGCACGTGTCAAGAGA 60.876 55.000 18.38 0.84 0.00 3.10
5341 5511 1.570813 CTGTGCACGTGTCAAGAGAA 58.429 50.000 18.38 0.25 0.00 2.87
5342 5512 1.258982 CTGTGCACGTGTCAAGAGAAC 59.741 52.381 18.38 3.66 0.00 3.01
5343 5513 1.286501 GTGCACGTGTCAAGAGAACA 58.713 50.000 18.38 0.00 0.00 3.18
5344 5514 1.258982 GTGCACGTGTCAAGAGAACAG 59.741 52.381 18.38 0.00 0.00 3.16
5345 5515 0.233332 GCACGTGTCAAGAGAACAGC 59.767 55.000 18.38 0.00 0.00 4.40
5346 5516 1.858091 CACGTGTCAAGAGAACAGCT 58.142 50.000 7.58 0.00 0.00 4.24
5347 5517 1.524355 CACGTGTCAAGAGAACAGCTG 59.476 52.381 13.48 13.48 0.00 4.24
5350 5520 2.219674 CGTGTCAAGAGAACAGCTGAAC 59.780 50.000 23.35 13.49 0.00 3.18
5354 5524 2.149578 CAAGAGAACAGCTGAACAGGG 58.850 52.381 23.35 0.00 0.00 4.45
5378 5548 0.834612 CCAAACCTGATAGGCCGGTA 59.165 55.000 1.90 0.00 39.63 4.02
5379 5549 1.210967 CCAAACCTGATAGGCCGGTAA 59.789 52.381 1.90 0.00 39.63 2.85
5399 5614 5.121925 GGTAACTAAGCACCAGAAGTAAAGC 59.878 44.000 0.00 0.00 34.77 3.51
5400 5615 4.351874 ACTAAGCACCAGAAGTAAAGCA 57.648 40.909 0.00 0.00 0.00 3.91
5416 5632 6.001460 AGTAAAGCATAGTGTTAGCCAACAA 58.999 36.000 0.00 0.00 45.99 2.83
5418 5634 2.742053 AGCATAGTGTTAGCCAACAACG 59.258 45.455 0.00 0.00 45.99 4.10
5465 5685 2.413837 CGAAACGAACAATGGAGTCCT 58.586 47.619 11.33 0.00 0.00 3.85
5548 5783 1.836802 AGAAGGGGAGAGCTTTAGCAG 59.163 52.381 4.33 0.00 45.16 4.24
5570 5805 4.037208 AGCACACTTCAATGTCTTTTCTGG 59.963 41.667 0.00 0.00 0.00 3.86
5591 5826 3.564644 GGATCCATGAAAGCACAGATGAG 59.435 47.826 6.95 0.00 0.00 2.90
5648 5883 7.798596 AACATTGATCAGATACATTGGTCTC 57.201 36.000 0.00 0.00 0.00 3.36
5682 5925 2.756760 CAGGGGAGTTCCATTGATGTTG 59.243 50.000 0.00 0.00 37.91 3.33
5699 5942 0.396435 TTGCACGAAGACATGGACCT 59.604 50.000 0.00 0.00 0.00 3.85
5704 5947 3.512680 CACGAAGACATGGACCTTACTC 58.487 50.000 0.00 0.00 0.00 2.59
5713 5956 4.080863 ACATGGACCTTACTCATGGAAGAC 60.081 45.833 0.00 0.00 41.64 3.01
5725 5968 4.769688 TCATGGAAGACGATTTGTAGCAT 58.230 39.130 0.00 0.00 0.00 3.79
5732 5975 1.065709 ACGATTTGTAGCATCGGGGTT 60.066 47.619 8.08 0.00 46.44 4.11
5733 5976 2.014128 CGATTTGTAGCATCGGGGTTT 58.986 47.619 0.00 0.00 39.94 3.27
5734 5977 2.223249 CGATTTGTAGCATCGGGGTTTG 60.223 50.000 0.00 0.00 39.94 2.93
5735 5978 2.570415 TTTGTAGCATCGGGGTTTGA 57.430 45.000 0.00 0.00 0.00 2.69
5736 5979 2.799126 TTGTAGCATCGGGGTTTGAT 57.201 45.000 0.00 0.00 0.00 2.57
5737 5980 2.799126 TGTAGCATCGGGGTTTGATT 57.201 45.000 0.00 0.00 0.00 2.57
5738 5981 3.916359 TGTAGCATCGGGGTTTGATTA 57.084 42.857 0.00 0.00 0.00 1.75
5739 5982 4.223556 TGTAGCATCGGGGTTTGATTAA 57.776 40.909 0.00 0.00 0.00 1.40
5740 5983 3.942748 TGTAGCATCGGGGTTTGATTAAC 59.057 43.478 0.00 0.00 35.94 2.01
5741 5984 3.366052 AGCATCGGGGTTTGATTAACT 57.634 42.857 0.00 0.00 36.93 2.24
5742 5985 3.279434 AGCATCGGGGTTTGATTAACTC 58.721 45.455 0.00 0.00 36.43 3.01
5743 5986 3.054361 AGCATCGGGGTTTGATTAACTCT 60.054 43.478 0.00 0.00 37.39 3.24
5744 5987 3.694566 GCATCGGGGTTTGATTAACTCTT 59.305 43.478 0.00 0.00 37.39 2.85
5745 5988 4.879545 GCATCGGGGTTTGATTAACTCTTA 59.120 41.667 0.00 0.00 37.39 2.10
5746 5989 5.220796 GCATCGGGGTTTGATTAACTCTTAC 60.221 44.000 0.00 0.00 37.39 2.34
5747 5990 4.835678 TCGGGGTTTGATTAACTCTTACC 58.164 43.478 0.00 0.00 37.39 2.85
5748 5991 4.533311 TCGGGGTTTGATTAACTCTTACCT 59.467 41.667 0.00 0.00 37.39 3.08
5749 5992 5.013391 TCGGGGTTTGATTAACTCTTACCTT 59.987 40.000 0.00 0.00 37.39 3.50
5750 5993 5.353400 CGGGGTTTGATTAACTCTTACCTTC 59.647 44.000 0.00 0.00 37.39 3.46
5751 5994 6.482524 GGGGTTTGATTAACTCTTACCTTCT 58.517 40.000 0.00 0.00 37.39 2.85
5752 5995 6.946583 GGGGTTTGATTAACTCTTACCTTCTT 59.053 38.462 0.00 0.00 37.39 2.52
5753 5996 8.105197 GGGGTTTGATTAACTCTTACCTTCTTA 58.895 37.037 0.00 0.00 37.39 2.10
5754 5997 8.944029 GGGTTTGATTAACTCTTACCTTCTTAC 58.056 37.037 0.00 0.00 34.20 2.34
5755 5998 8.944029 GGTTTGATTAACTCTTACCTTCTTACC 58.056 37.037 0.00 0.00 36.93 2.85
5756 5999 9.722184 GTTTGATTAACTCTTACCTTCTTACCT 57.278 33.333 0.00 0.00 33.79 3.08
5757 6000 9.939802 TTTGATTAACTCTTACCTTCTTACCTC 57.060 33.333 0.00 0.00 0.00 3.85
5758 6001 8.075761 TGATTAACTCTTACCTTCTTACCTCC 57.924 38.462 0.00 0.00 0.00 4.30
5759 6002 6.864151 TTAACTCTTACCTTCTTACCTCCC 57.136 41.667 0.00 0.00 0.00 4.30
5760 6003 4.415224 ACTCTTACCTTCTTACCTCCCA 57.585 45.455 0.00 0.00 0.00 4.37
5761 6004 4.961585 ACTCTTACCTTCTTACCTCCCAT 58.038 43.478 0.00 0.00 0.00 4.00
5762 6005 6.101274 ACTCTTACCTTCTTACCTCCCATA 57.899 41.667 0.00 0.00 0.00 2.74
5763 6006 6.694611 ACTCTTACCTTCTTACCTCCCATAT 58.305 40.000 0.00 0.00 0.00 1.78
5764 6007 6.555360 ACTCTTACCTTCTTACCTCCCATATG 59.445 42.308 0.00 0.00 0.00 1.78
5765 6008 6.689561 TCTTACCTTCTTACCTCCCATATGA 58.310 40.000 3.65 0.00 0.00 2.15
5766 6009 7.136885 TCTTACCTTCTTACCTCCCATATGAA 58.863 38.462 3.65 0.00 0.00 2.57
5767 6010 7.626084 TCTTACCTTCTTACCTCCCATATGAAA 59.374 37.037 3.65 0.00 0.00 2.69
5768 6011 6.652205 ACCTTCTTACCTCCCATATGAAAA 57.348 37.500 3.65 0.00 0.00 2.29
5769 6012 6.663734 ACCTTCTTACCTCCCATATGAAAAG 58.336 40.000 3.65 0.00 0.00 2.27
5770 6013 6.447084 ACCTTCTTACCTCCCATATGAAAAGA 59.553 38.462 3.65 1.51 0.00 2.52
5771 6014 6.995091 CCTTCTTACCTCCCATATGAAAAGAG 59.005 42.308 3.65 4.86 0.00 2.85
5773 6016 5.369699 TCTTACCTCCCATATGAAAAGAGGG 59.630 44.000 23.45 9.77 46.93 4.30
5774 6017 2.785857 ACCTCCCATATGAAAAGAGGGG 59.214 50.000 23.45 9.91 46.93 4.79
5775 6018 2.108952 CCTCCCATATGAAAAGAGGGGG 59.891 54.545 16.95 9.55 40.42 5.40
5776 6019 2.785857 CTCCCATATGAAAAGAGGGGGT 59.214 50.000 3.65 0.00 40.02 4.95
5777 6020 3.980698 CTCCCATATGAAAAGAGGGGGTA 59.019 47.826 3.65 0.00 40.02 3.69
5778 6021 3.980698 TCCCATATGAAAAGAGGGGGTAG 59.019 47.826 3.65 0.00 40.02 3.18
5779 6022 3.980698 CCCATATGAAAAGAGGGGGTAGA 59.019 47.826 3.65 0.00 35.83 2.59
5780 6023 4.603610 CCCATATGAAAAGAGGGGGTAGAT 59.396 45.833 3.65 0.00 35.83 1.98
5781 6024 5.280727 CCCATATGAAAAGAGGGGGTAGATC 60.281 48.000 3.65 0.00 35.83 2.75
5782 6025 5.310594 CCATATGAAAAGAGGGGGTAGATCA 59.689 44.000 3.65 0.00 0.00 2.92
5783 6026 6.183361 CCATATGAAAAGAGGGGGTAGATCAA 60.183 42.308 3.65 0.00 0.00 2.57
5784 6027 5.796502 ATGAAAAGAGGGGGTAGATCAAA 57.203 39.130 0.00 0.00 0.00 2.69
5785 6028 5.592587 TGAAAAGAGGGGGTAGATCAAAA 57.407 39.130 0.00 0.00 0.00 2.44
5786 6029 5.321927 TGAAAAGAGGGGGTAGATCAAAAC 58.678 41.667 0.00 0.00 0.00 2.43
5787 6030 5.163034 TGAAAAGAGGGGGTAGATCAAAACA 60.163 40.000 0.00 0.00 0.00 2.83
5788 6031 4.302559 AAGAGGGGGTAGATCAAAACAC 57.697 45.455 0.00 0.00 0.00 3.32
5789 6032 3.532102 AGAGGGGGTAGATCAAAACACT 58.468 45.455 0.00 0.00 0.00 3.55
5790 6033 4.695606 AGAGGGGGTAGATCAAAACACTA 58.304 43.478 0.00 0.00 0.00 2.74
5791 6034 4.470304 AGAGGGGGTAGATCAAAACACTAC 59.530 45.833 0.00 0.00 36.69 2.73
5792 6035 4.436079 AGGGGGTAGATCAAAACACTACT 58.564 43.478 0.00 0.00 37.32 2.57
5793 6036 5.596763 AGGGGGTAGATCAAAACACTACTA 58.403 41.667 0.00 0.00 37.32 1.82
5794 6037 6.210522 AGGGGGTAGATCAAAACACTACTAT 58.789 40.000 0.00 0.00 37.32 2.12
5795 6038 6.677076 AGGGGGTAGATCAAAACACTACTATT 59.323 38.462 0.00 0.00 37.32 1.73
5796 6039 7.184022 AGGGGGTAGATCAAAACACTACTATTT 59.816 37.037 0.00 0.00 37.32 1.40
5797 6040 7.498239 GGGGGTAGATCAAAACACTACTATTTC 59.502 40.741 0.00 0.00 37.32 2.17
5798 6041 8.265764 GGGGTAGATCAAAACACTACTATTTCT 58.734 37.037 0.00 0.00 37.32 2.52
5799 6042 9.668497 GGGTAGATCAAAACACTACTATTTCTT 57.332 33.333 0.00 0.00 37.32 2.52
5803 6046 9.965902 AGATCAAAACACTACTATTTCTTCCAT 57.034 29.630 0.00 0.00 0.00 3.41
5805 6048 8.251750 TCAAAACACTACTATTTCTTCCATCG 57.748 34.615 0.00 0.00 0.00 3.84
5806 6049 7.333423 TCAAAACACTACTATTTCTTCCATCGG 59.667 37.037 0.00 0.00 0.00 4.18
5807 6050 5.277857 ACACTACTATTTCTTCCATCGGG 57.722 43.478 0.00 0.00 0.00 5.14
5808 6051 4.101119 ACACTACTATTTCTTCCATCGGGG 59.899 45.833 0.00 0.00 38.37 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.464452 ATTCAGGCGTAGGTGTAGGC 59.536 55.000 0.00 0.00 38.99 3.93
27 28 1.602237 CCCATTCAGGCGTAGGTGT 59.398 57.895 0.00 0.00 35.39 4.16
39 40 2.020131 CATGCGAGTGAGCCCATTC 58.980 57.895 0.00 0.00 36.02 2.67
40 41 2.117156 GCATGCGAGTGAGCCCATT 61.117 57.895 0.00 0.00 36.02 3.16
58 64 2.125912 CAACAGAGGCTCCGTCGG 60.126 66.667 11.71 4.39 0.00 4.79
70 81 0.109597 GGATCCAAGCAACGCAACAG 60.110 55.000 6.95 0.00 0.00 3.16
76 87 1.667236 TGCATAGGATCCAAGCAACG 58.333 50.000 19.45 1.14 31.42 4.10
109 126 4.328440 CACTCTCACCTAAAGCAGATTTCG 59.672 45.833 0.00 0.00 32.01 3.46
115 132 2.676463 GCCTCACTCTCACCTAAAGCAG 60.676 54.545 0.00 0.00 0.00 4.24
123 140 0.820871 CTACCAGCCTCACTCTCACC 59.179 60.000 0.00 0.00 0.00 4.02
127 144 1.682394 CGGTACTACCAGCCTCACTCT 60.682 57.143 6.06 0.00 38.47 3.24
128 145 0.739561 CGGTACTACCAGCCTCACTC 59.260 60.000 6.06 0.00 38.47 3.51
129 146 0.039326 ACGGTACTACCAGCCTCACT 59.961 55.000 6.06 0.00 38.47 3.41
130 147 0.455005 GACGGTACTACCAGCCTCAC 59.545 60.000 6.06 0.00 38.47 3.51
131 148 0.038599 TGACGGTACTACCAGCCTCA 59.961 55.000 6.06 0.00 38.47 3.86
132 149 0.455005 GTGACGGTACTACCAGCCTC 59.545 60.000 6.06 0.00 38.47 4.70
133 150 0.039326 AGTGACGGTACTACCAGCCT 59.961 55.000 6.06 0.00 38.47 4.58
135 152 1.467035 CGAAGTGACGGTACTACCAGC 60.467 57.143 6.06 0.00 38.47 4.85
136 153 2.079158 TCGAAGTGACGGTACTACCAG 58.921 52.381 6.06 1.50 38.47 4.00
137 154 2.079158 CTCGAAGTGACGGTACTACCA 58.921 52.381 6.06 0.00 38.47 3.25
150 167 2.136298 TCAGATGAGGCTCTCGAAGT 57.864 50.000 16.72 0.00 32.35 3.01
151 168 3.731652 ATTCAGATGAGGCTCTCGAAG 57.268 47.619 16.72 2.35 32.35 3.79
228 255 4.023193 GCATAATAATGGTTCCGGGACTTG 60.023 45.833 13.96 0.00 33.38 3.16
236 263 6.992715 AGTGTACTCAGCATAATAATGGTTCC 59.007 38.462 0.00 0.00 41.85 3.62
240 267 6.447162 TCGAGTGTACTCAGCATAATAATGG 58.553 40.000 12.11 0.00 43.00 3.16
252 279 5.207768 GTCGTTTTACTTCGAGTGTACTCA 58.792 41.667 12.11 0.00 43.00 3.41
253 280 4.614702 GGTCGTTTTACTTCGAGTGTACTC 59.385 45.833 1.92 1.92 39.55 2.59
254 281 4.540824 GGTCGTTTTACTTCGAGTGTACT 58.459 43.478 0.00 0.00 36.76 2.73
255 282 3.358993 CGGTCGTTTTACTTCGAGTGTAC 59.641 47.826 0.71 0.00 36.76 2.90
294 321 0.453793 TTTTGGTTGTGCGTCAGGTG 59.546 50.000 0.00 0.00 0.00 4.00
295 322 0.454196 GTTTTGGTTGTGCGTCAGGT 59.546 50.000 0.00 0.00 0.00 4.00
296 323 0.591236 CGTTTTGGTTGTGCGTCAGG 60.591 55.000 0.00 0.00 0.00 3.86
297 324 0.591236 CCGTTTTGGTTGTGCGTCAG 60.591 55.000 0.00 0.00 0.00 3.51
298 325 1.429825 CCGTTTTGGTTGTGCGTCA 59.570 52.632 0.00 0.00 0.00 4.35
332 359 9.424659 CGAAATCAAGAAAAGGTGAAATTTTTG 57.575 29.630 0.00 0.00 30.22 2.44
333 360 9.377312 TCGAAATCAAGAAAAGGTGAAATTTTT 57.623 25.926 0.00 0.00 30.22 1.94
341 368 5.673337 TCTGTCGAAATCAAGAAAAGGTG 57.327 39.130 0.00 0.00 0.00 4.00
365 393 7.776618 AACTTTCTGGGGGAAATAGTTTAAG 57.223 36.000 0.00 0.00 42.25 1.85
382 410 2.071778 TTGCAGCCCAGAAACTTTCT 57.928 45.000 0.00 0.00 41.70 2.52
394 422 3.435186 GTCGGCCTCTTTGCAGCC 61.435 66.667 0.00 3.86 43.53 4.85
396 424 2.684843 GCAGTCGGCCTCTTTGCAG 61.685 63.158 0.00 0.00 36.11 4.41
431 459 2.698855 ATGCTGCCGTACTTCATTCT 57.301 45.000 0.00 0.00 0.00 2.40
445 473 8.421673 TGCTCGTATAGTAGTAGTATATGCTG 57.578 38.462 15.38 12.37 0.00 4.41
639 675 2.035783 GACCCCTTCCCTTGGTGC 59.964 66.667 0.00 0.00 30.97 5.01
642 678 2.933834 ACGGACCCCTTCCCTTGG 60.934 66.667 0.00 0.00 42.27 3.61
881 924 0.178947 GAGGAGGGATCTGGACGGAT 60.179 60.000 0.00 0.00 0.00 4.18
911 954 2.184579 GAAAGGAGACGGCGAGGG 59.815 66.667 16.62 0.00 0.00 4.30
953 996 0.177604 CCAGATCCAGAGCACAGGTC 59.822 60.000 0.00 0.00 0.00 3.85
954 997 1.270414 CCCAGATCCAGAGCACAGGT 61.270 60.000 0.00 0.00 0.00 4.00
955 998 1.270414 ACCCAGATCCAGAGCACAGG 61.270 60.000 0.00 0.00 0.00 4.00
956 999 0.107800 CACCCAGATCCAGAGCACAG 60.108 60.000 0.00 0.00 0.00 3.66
987 1030 1.069765 CATCATCTTCCCCGACCGG 59.930 63.158 0.00 0.00 0.00 5.28
995 1038 1.152881 AAGCCGCCCATCATCTTCC 60.153 57.895 0.00 0.00 0.00 3.46
996 1039 1.502163 CGAAGCCGCCCATCATCTTC 61.502 60.000 0.00 0.00 0.00 2.87
1046 1089 1.004277 CAAGATTCAAACGGAGGGGGA 59.996 52.381 0.00 0.00 0.00 4.81
1108 1151 3.350833 CCTGGGATCAGTTTCTTTCCAG 58.649 50.000 0.00 0.00 39.31 3.86
1111 1154 1.740025 CGCCTGGGATCAGTTTCTTTC 59.260 52.381 0.00 0.00 39.31 2.62
1324 1377 8.727910 CGAGGCAATAGACATGTACTAGTATAA 58.272 37.037 5.75 0.00 0.00 0.98
1325 1378 8.098912 TCGAGGCAATAGACATGTACTAGTATA 58.901 37.037 5.75 3.51 0.00 1.47
1326 1379 6.940867 TCGAGGCAATAGACATGTACTAGTAT 59.059 38.462 5.75 0.00 0.00 2.12
1329 1382 5.335269 CCTCGAGGCAATAGACATGTACTAG 60.335 48.000 20.67 0.00 0.00 2.57
1332 1385 3.068307 ACCTCGAGGCAATAGACATGTAC 59.932 47.826 31.56 0.00 39.32 2.90
1373 1435 3.533919 CGTTGTGCAATGCATTGAAAAC 58.466 40.909 37.36 30.73 41.91 2.43
1470 1535 6.464222 CATTATCCGACCCTAAGCATTTCTA 58.536 40.000 0.00 0.00 0.00 2.10
1471 1536 5.308825 CATTATCCGACCCTAAGCATTTCT 58.691 41.667 0.00 0.00 0.00 2.52
1472 1537 4.455877 CCATTATCCGACCCTAAGCATTTC 59.544 45.833 0.00 0.00 0.00 2.17
1473 1538 4.104102 TCCATTATCCGACCCTAAGCATTT 59.896 41.667 0.00 0.00 0.00 2.32
1474 1539 3.650942 TCCATTATCCGACCCTAAGCATT 59.349 43.478 0.00 0.00 0.00 3.56
1475 1540 3.248024 TCCATTATCCGACCCTAAGCAT 58.752 45.455 0.00 0.00 0.00 3.79
1478 1543 7.394816 ACAATATTCCATTATCCGACCCTAAG 58.605 38.462 0.00 0.00 0.00 2.18
1480 1545 6.729100 AGACAATATTCCATTATCCGACCCTA 59.271 38.462 0.00 0.00 0.00 3.53
1481 1546 5.548056 AGACAATATTCCATTATCCGACCCT 59.452 40.000 0.00 0.00 0.00 4.34
1482 1547 5.805728 AGACAATATTCCATTATCCGACCC 58.194 41.667 0.00 0.00 0.00 4.46
1483 1548 6.149474 CCAAGACAATATTCCATTATCCGACC 59.851 42.308 0.00 0.00 0.00 4.79
1484 1549 6.348540 GCCAAGACAATATTCCATTATCCGAC 60.349 42.308 0.00 0.00 0.00 4.79
1485 1550 5.705441 GCCAAGACAATATTCCATTATCCGA 59.295 40.000 0.00 0.00 0.00 4.55
1486 1551 5.473162 TGCCAAGACAATATTCCATTATCCG 59.527 40.000 0.00 0.00 0.00 4.18
1487 1552 6.899393 TGCCAAGACAATATTCCATTATCC 57.101 37.500 0.00 0.00 0.00 2.59
1488 1553 7.889469 ACATGCCAAGACAATATTCCATTATC 58.111 34.615 0.00 0.00 0.00 1.75
1489 1554 7.844493 ACATGCCAAGACAATATTCCATTAT 57.156 32.000 0.00 0.00 0.00 1.28
1490 1555 7.341512 TCAACATGCCAAGACAATATTCCATTA 59.658 33.333 0.00 0.00 0.00 1.90
1491 1556 6.154877 TCAACATGCCAAGACAATATTCCATT 59.845 34.615 0.00 0.00 0.00 3.16
1492 1557 5.657745 TCAACATGCCAAGACAATATTCCAT 59.342 36.000 0.00 0.00 0.00 3.41
1493 1558 5.015515 TCAACATGCCAAGACAATATTCCA 58.984 37.500 0.00 0.00 0.00 3.53
1494 1559 5.581126 TCAACATGCCAAGACAATATTCC 57.419 39.130 0.00 0.00 0.00 3.01
1495 1560 9.585099 TTAAATCAACATGCCAAGACAATATTC 57.415 29.630 0.00 0.00 0.00 1.75
1498 1563 9.941325 AAATTAAATCAACATGCCAAGACAATA 57.059 25.926 0.00 0.00 0.00 1.90
1499 1564 8.723311 CAAATTAAATCAACATGCCAAGACAAT 58.277 29.630 0.00 0.00 0.00 2.71
1500 1565 7.172875 CCAAATTAAATCAACATGCCAAGACAA 59.827 33.333 0.00 0.00 0.00 3.18
1501 1566 6.649973 CCAAATTAAATCAACATGCCAAGACA 59.350 34.615 0.00 0.00 0.00 3.41
1502 1567 6.650390 ACCAAATTAAATCAACATGCCAAGAC 59.350 34.615 0.00 0.00 0.00 3.01
1503 1568 6.767456 ACCAAATTAAATCAACATGCCAAGA 58.233 32.000 0.00 0.00 0.00 3.02
1504 1569 7.437793 AACCAAATTAAATCAACATGCCAAG 57.562 32.000 0.00 0.00 0.00 3.61
1505 1570 9.160496 GATAACCAAATTAAATCAACATGCCAA 57.840 29.630 0.00 0.00 0.00 4.52
1506 1571 8.538701 AGATAACCAAATTAAATCAACATGCCA 58.461 29.630 0.00 0.00 0.00 4.92
1507 1572 8.819974 CAGATAACCAAATTAAATCAACATGCC 58.180 33.333 0.00 0.00 0.00 4.40
1508 1573 8.330302 GCAGATAACCAAATTAAATCAACATGC 58.670 33.333 0.00 0.00 0.00 4.06
1509 1574 8.819974 GGCAGATAACCAAATTAAATCAACATG 58.180 33.333 0.00 0.00 0.00 3.21
1510 1575 8.538701 TGGCAGATAACCAAATTAAATCAACAT 58.461 29.630 0.00 0.00 33.12 2.71
1511 1576 7.901029 TGGCAGATAACCAAATTAAATCAACA 58.099 30.769 0.00 0.00 33.12 3.33
1540 1605 5.376625 AGCCTGAAAAGTGAGTTTGACATA 58.623 37.500 0.00 0.00 0.00 2.29
1644 1710 3.778718 CACGAAAGAACACGAACAAACAG 59.221 43.478 0.00 0.00 0.00 3.16
1691 1757 1.003580 AGCTTCTCGGCATCCTTCAAA 59.996 47.619 0.00 0.00 34.17 2.69
1762 1828 2.568090 CGCATCGGGCTGCTTTTT 59.432 55.556 0.00 0.00 40.06 1.94
1763 1829 4.120331 GCGCATCGGGCTGCTTTT 62.120 61.111 0.30 0.00 40.06 2.27
1765 1831 3.755526 TATGCGCATCGGGCTGCTT 62.756 57.895 29.11 1.29 42.10 3.91
1767 1833 3.720193 CTATGCGCATCGGGCTGC 61.720 66.667 29.11 0.00 42.10 5.25
1768 1834 3.720193 GCTATGCGCATCGGGCTG 61.720 66.667 29.11 11.97 42.10 4.85
1770 1836 3.418068 GAGCTATGCGCATCGGGC 61.418 66.667 29.11 26.65 42.61 6.13
1771 1837 2.740055 GGAGCTATGCGCATCGGG 60.740 66.667 29.11 18.64 42.61 5.14
1772 1838 2.740055 GGGAGCTATGCGCATCGG 60.740 66.667 29.11 21.19 42.61 4.18
1773 1839 3.108289 CGGGAGCTATGCGCATCG 61.108 66.667 29.11 22.46 42.61 3.84
1785 1851 4.335647 ACCCTGTGCAAGCGGGAG 62.336 66.667 19.81 6.26 40.55 4.30
1786 1852 4.329545 GACCCTGTGCAAGCGGGA 62.330 66.667 19.81 0.00 40.55 5.14
1789 1855 4.680237 TCGGACCCTGTGCAAGCG 62.680 66.667 0.00 0.00 0.00 4.68
1790 1856 3.050275 GTCGGACCCTGTGCAAGC 61.050 66.667 0.00 0.00 0.00 4.01
1791 1857 2.358737 GGTCGGACCCTGTGCAAG 60.359 66.667 16.55 0.00 30.04 4.01
1792 1858 3.164977 TGGTCGGACCCTGTGCAA 61.165 61.111 23.81 0.61 37.50 4.08
1793 1859 3.936203 GTGGTCGGACCCTGTGCA 61.936 66.667 23.81 1.39 37.50 4.57
1794 1860 2.676163 AAAGTGGTCGGACCCTGTGC 62.676 60.000 23.81 9.21 37.50 4.57
1795 1861 0.884704 CAAAGTGGTCGGACCCTGTG 60.885 60.000 23.81 19.51 37.50 3.66
1796 1862 1.450211 CAAAGTGGTCGGACCCTGT 59.550 57.895 23.81 12.71 37.50 4.00
1797 1863 1.302511 CCAAAGTGGTCGGACCCTG 60.303 63.158 23.81 14.77 37.50 4.45
1798 1864 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1799 1865 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1800 1866 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1801 1867 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1806 1872 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1807 1873 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1808 1874 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1809 1875 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1810 1876 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1811 1877 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1812 1878 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1813 1879 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1814 1880 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1815 1881 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1816 1882 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1817 1883 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1818 1884 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1819 1885 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1820 1886 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1821 1887 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1822 1888 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1823 1889 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1824 1890 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1825 1891 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1826 1892 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1827 1893 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1828 1894 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1829 1895 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1830 1896 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1831 1897 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1832 1898 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1833 1899 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1834 1900 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1835 1901 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1836 1902 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1837 1903 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1838 1904 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1839 1905 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1840 1906 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1841 1907 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1842 1908 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1843 1909 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1857 1923 0.395312 GGGTTCGAGTCCTGGAAACA 59.605 55.000 8.95 0.00 36.84 2.83
1858 1924 0.669625 CGGGTTCGAGTCCTGGAAAC 60.670 60.000 0.00 0.00 39.00 2.78
1859 1925 1.117142 ACGGGTTCGAGTCCTGGAAA 61.117 55.000 17.72 0.00 40.11 3.13
1860 1926 1.532316 ACGGGTTCGAGTCCTGGAA 60.532 57.895 17.72 0.00 40.11 3.53
1861 1927 2.116772 ACGGGTTCGAGTCCTGGA 59.883 61.111 17.72 0.00 40.11 3.86
1862 1928 2.261671 CACGGGTTCGAGTCCTGG 59.738 66.667 17.72 9.36 40.11 4.45
1863 1929 1.080705 GTCACGGGTTCGAGTCCTG 60.081 63.158 13.65 13.65 40.11 3.86
1864 1930 2.273912 GGTCACGGGTTCGAGTCCT 61.274 63.158 8.28 0.00 40.11 3.85
1865 1931 2.210341 GAGGTCACGGGTTCGAGTCC 62.210 65.000 0.82 0.82 40.11 3.85
1866 1932 1.212229 GAGGTCACGGGTTCGAGTC 59.788 63.158 0.00 0.00 40.11 3.36
1867 1933 0.898789 ATGAGGTCACGGGTTCGAGT 60.899 55.000 0.00 0.00 40.11 4.18
1868 1934 0.458543 CATGAGGTCACGGGTTCGAG 60.459 60.000 0.00 0.00 40.11 4.04
1869 1935 1.589630 CATGAGGTCACGGGTTCGA 59.410 57.895 0.00 0.00 40.11 3.71
1870 1936 1.447838 CCATGAGGTCACGGGTTCG 60.448 63.158 0.00 0.00 43.02 3.95
1871 1937 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
1881 1947 2.620251 TCCGCTTTATGACCATGAGG 57.380 50.000 0.00 0.00 42.21 3.86
1882 1948 3.732212 TGATCCGCTTTATGACCATGAG 58.268 45.455 0.00 0.00 0.00 2.90
1883 1949 3.836365 TGATCCGCTTTATGACCATGA 57.164 42.857 0.00 0.00 0.00 3.07
1884 1950 4.336433 ACTTTGATCCGCTTTATGACCATG 59.664 41.667 0.00 0.00 0.00 3.66
1885 1951 4.336433 CACTTTGATCCGCTTTATGACCAT 59.664 41.667 0.00 0.00 0.00 3.55
1886 1952 3.689161 CACTTTGATCCGCTTTATGACCA 59.311 43.478 0.00 0.00 0.00 4.02
1887 1953 3.689649 ACACTTTGATCCGCTTTATGACC 59.310 43.478 0.00 0.00 0.00 4.02
1888 1954 4.946784 ACACTTTGATCCGCTTTATGAC 57.053 40.909 0.00 0.00 0.00 3.06
1889 1955 7.441890 TTTTACACTTTGATCCGCTTTATGA 57.558 32.000 0.00 0.00 0.00 2.15
1890 1956 9.781834 TTATTTTACACTTTGATCCGCTTTATG 57.218 29.630 0.00 0.00 0.00 1.90
1931 1997 6.817765 TCTTTTCCATGTGATTGGACTTAC 57.182 37.500 0.00 0.00 45.42 2.34
1938 2004 9.865321 ATTATCAAGTTCTTTTCCATGTGATTG 57.135 29.630 0.00 0.00 0.00 2.67
1989 2055 8.384607 TGCAAGTGTTTATTGACTAATACACA 57.615 30.769 0.00 0.00 37.20 3.72
1995 2061 9.462174 CAGAAAATGCAAGTGTTTATTGACTAA 57.538 29.630 0.00 0.00 0.00 2.24
2019 2085 3.519579 TGTGCATCAAACACCAAAACAG 58.480 40.909 0.00 0.00 37.22 3.16
2180 2246 5.749462 AGGCTAATGCTGTGAACTTCTAAT 58.251 37.500 0.00 0.00 39.59 1.73
2181 2247 5.165961 AGGCTAATGCTGTGAACTTCTAA 57.834 39.130 0.00 0.00 39.59 2.10
2182 2248 4.826274 AGGCTAATGCTGTGAACTTCTA 57.174 40.909 0.00 0.00 39.59 2.10
2309 2375 2.664402 AAGAGTGCAATCCTTGGTGT 57.336 45.000 11.14 0.00 0.00 4.16
2310 2376 2.886523 TGAAAGAGTGCAATCCTTGGTG 59.113 45.455 11.14 0.00 0.00 4.17
2324 2390 4.321718 TGTCCAAAGAGCTGATGAAAGAG 58.678 43.478 0.00 0.00 0.00 2.85
2586 2660 4.668686 CGAGCTCTCAACTCAAGCAAATTC 60.669 45.833 12.85 0.00 38.51 2.17
2807 2884 7.333528 AGATTAAATGGTGCATTAACATCGT 57.666 32.000 0.00 0.00 32.43 3.73
2891 2968 4.339247 GCCACCATATAACATGCAGAACTT 59.661 41.667 0.00 0.00 0.00 2.66
2923 3000 7.886629 ATACATCACAAATGTTAGCTGGAAT 57.113 32.000 0.00 0.00 33.76 3.01
2975 3052 1.412079 TGCCAAACACTTGAGCCATT 58.588 45.000 0.00 0.00 34.14 3.16
2995 3072 5.652014 CCTAAACTGCAATACATTTCAGGGA 59.348 40.000 6.56 0.00 35.73 4.20
3090 3167 6.882610 TCACAGCAATTGTTTAGACTCAAT 57.117 33.333 7.40 0.00 38.16 2.57
3179 3256 3.744660 ACCAAAGTTCTGCTGACTTAGG 58.255 45.455 0.00 0.00 0.00 2.69
3296 3373 5.772393 TTTACCCTATGGCTCAAGAAGAA 57.228 39.130 0.00 0.00 33.59 2.52
3314 3391 7.875971 TCTTTTGAGAGGCTTCAGAAATTTAC 58.124 34.615 0.00 0.00 0.00 2.01
3570 3651 4.286032 TCCAACTGAATATATTCTCCGGGG 59.714 45.833 22.77 17.30 37.67 5.73
3625 3706 0.035152 TGCTGGCATCTTACCACAGG 60.035 55.000 0.00 0.00 32.49 4.00
3800 3884 6.420008 GCATATGAAATGAAATGGCAGAGAAC 59.580 38.462 6.97 0.00 0.00 3.01
3801 3885 6.461927 GGCATATGAAATGAAATGGCAGAGAA 60.462 38.462 6.97 0.00 42.61 2.87
3802 3886 5.010314 GGCATATGAAATGAAATGGCAGAGA 59.990 40.000 6.97 0.00 42.61 3.10
3808 3892 8.805175 TGTTATAGGGCATATGAAATGAAATGG 58.195 33.333 6.97 0.00 0.00 3.16
3829 3913 9.606631 TTTGCAAACTGGTATTTTCTTTGTTAT 57.393 25.926 8.05 0.00 0.00 1.89
3941 4026 4.822026 ACTTCAGCGCTTACTAATGTTCT 58.178 39.130 7.50 0.00 0.00 3.01
3946 4031 4.730949 TGGTACTTCAGCGCTTACTAAT 57.269 40.909 7.50 0.00 0.00 1.73
3972 4057 5.904362 AATGCAGGATTGAGGTTTAACTC 57.096 39.130 0.00 0.00 37.99 3.01
4012 4097 7.647715 TGCAACTTTCTGAGTTTTAACATTAGC 59.352 33.333 0.00 0.00 46.34 3.09
4024 4109 3.144506 CAGATGGTGCAACTTTCTGAGT 58.855 45.455 23.06 0.00 43.58 3.41
4093 4178 6.540914 TCGGCCATAGAGTAAAAACCTTAATG 59.459 38.462 2.24 0.00 0.00 1.90
4096 4181 5.680594 TCGGCCATAGAGTAAAAACCTTA 57.319 39.130 2.24 0.00 0.00 2.69
4104 4189 3.709653 ACCAATCTTCGGCCATAGAGTAA 59.290 43.478 2.24 0.00 0.00 2.24
4151 4236 5.187687 CCCTCCAAGGCGTACTAAAAATAA 58.812 41.667 0.00 0.00 32.73 1.40
4152 4237 4.773013 CCCTCCAAGGCGTACTAAAAATA 58.227 43.478 0.00 0.00 32.73 1.40
4165 4253 0.622665 AACTGATGAGCCCTCCAAGG 59.377 55.000 0.00 0.00 34.30 3.61
4171 4259 0.908198 GTCTGGAACTGATGAGCCCT 59.092 55.000 0.00 0.00 38.85 5.19
4197 4285 9.778741 ATGTTGACTCTTGAGAATTAGTTAACA 57.221 29.630 13.35 13.35 46.05 2.41
4237 4325 8.239998 ACTGCATTTGAGACTTTAATAGAAAGC 58.760 33.333 0.00 0.00 0.00 3.51
4657 4749 1.278172 GATCGCCATGTCGTCCGATG 61.278 60.000 0.00 0.00 40.14 3.84
4724 4816 0.671251 CCATGACCGTCTCCTCTAGC 59.329 60.000 0.00 0.00 0.00 3.42
4805 4900 1.953686 TGGTTTGCAGCTAGGTTTCAC 59.046 47.619 0.00 0.00 0.00 3.18
4812 4907 6.091169 CCAATAAAACAATGGTTTGCAGCTAG 59.909 38.462 6.51 0.00 46.20 3.42
4928 5023 5.559035 CGGATGACAACTTCTGAAACAGAAC 60.559 44.000 9.67 2.20 44.27 3.01
4941 5036 3.771577 AGAAAGGAACGGATGACAACT 57.228 42.857 0.00 0.00 0.00 3.16
4942 5037 4.065789 AGAAGAAAGGAACGGATGACAAC 58.934 43.478 0.00 0.00 0.00 3.32
4944 5039 4.351874 AAGAAGAAAGGAACGGATGACA 57.648 40.909 0.00 0.00 0.00 3.58
4945 5040 4.154375 GGAAAGAAGAAAGGAACGGATGAC 59.846 45.833 0.00 0.00 0.00 3.06
4947 5042 4.154918 CAGGAAAGAAGAAAGGAACGGATG 59.845 45.833 0.00 0.00 0.00 3.51
4948 5043 4.202472 ACAGGAAAGAAGAAAGGAACGGAT 60.202 41.667 0.00 0.00 0.00 4.18
4949 5044 3.135895 ACAGGAAAGAAGAAAGGAACGGA 59.864 43.478 0.00 0.00 0.00 4.69
5072 5169 2.327325 ACCCAAAGAGAGCAGTAGGA 57.673 50.000 0.00 0.00 0.00 2.94
5074 5171 3.515901 ACCTTACCCAAAGAGAGCAGTAG 59.484 47.826 0.00 0.00 37.38 2.57
5076 5173 2.339769 ACCTTACCCAAAGAGAGCAGT 58.660 47.619 0.00 0.00 37.38 4.40
5077 5174 3.515901 ACTACCTTACCCAAAGAGAGCAG 59.484 47.826 0.00 0.00 37.38 4.24
5079 5176 3.261137 ACACTACCTTACCCAAAGAGAGC 59.739 47.826 0.00 0.00 37.38 4.09
5082 5179 5.238650 CACAAACACTACCTTACCCAAAGAG 59.761 44.000 0.00 0.00 37.38 2.85
5083 5180 5.127491 CACAAACACTACCTTACCCAAAGA 58.873 41.667 0.00 0.00 37.38 2.52
5084 5181 4.261447 GCACAAACACTACCTTACCCAAAG 60.261 45.833 0.00 0.00 34.73 2.77
5085 5182 3.633065 GCACAAACACTACCTTACCCAAA 59.367 43.478 0.00 0.00 0.00 3.28
5086 5183 3.117813 AGCACAAACACTACCTTACCCAA 60.118 43.478 0.00 0.00 0.00 4.12
5102 5208 1.944024 CACCGGAAGTACAAAGCACAA 59.056 47.619 9.46 0.00 0.00 3.33
5103 5209 1.139256 TCACCGGAAGTACAAAGCACA 59.861 47.619 9.46 0.00 0.00 4.57
5104 5210 1.873698 TCACCGGAAGTACAAAGCAC 58.126 50.000 9.46 0.00 0.00 4.40
5105 5211 2.623878 TTCACCGGAAGTACAAAGCA 57.376 45.000 9.46 0.00 0.00 3.91
5106 5212 3.335579 AGATTCACCGGAAGTACAAAGC 58.664 45.455 9.46 0.00 36.25 3.51
5107 5213 5.941948 AAAGATTCACCGGAAGTACAAAG 57.058 39.130 9.46 0.00 36.25 2.77
5108 5214 9.675464 ATTATAAAGATTCACCGGAAGTACAAA 57.325 29.630 9.46 0.00 36.25 2.83
5110 5216 9.976511 CTATTATAAAGATTCACCGGAAGTACA 57.023 33.333 9.46 0.00 36.25 2.90
5113 5219 9.930693 GATCTATTATAAAGATTCACCGGAAGT 57.069 33.333 9.46 0.00 36.25 3.01
5115 5221 9.929180 CAGATCTATTATAAAGATTCACCGGAA 57.071 33.333 9.46 0.00 33.82 4.30
5116 5222 9.309224 TCAGATCTATTATAAAGATTCACCGGA 57.691 33.333 9.46 0.00 33.82 5.14
5169 5275 2.187707 CAGTTGCCGATTGCTTAATGC 58.812 47.619 0.00 0.00 42.00 3.56
5170 5276 2.187707 GCAGTTGCCGATTGCTTAATG 58.812 47.619 0.00 0.00 42.00 1.90
5172 5278 1.242989 TGCAGTTGCCGATTGCTTAA 58.757 45.000 0.85 0.00 41.23 1.85
5174 5280 1.462616 TATGCAGTTGCCGATTGCTT 58.537 45.000 0.85 0.00 41.23 3.91
5175 5281 1.462616 TTATGCAGTTGCCGATTGCT 58.537 45.000 0.85 0.00 41.23 3.91
5185 5291 5.163581 GGCAGAAGATGTCAATTATGCAGTT 60.164 40.000 17.44 0.00 43.59 3.16
5196 5302 2.244486 AGGAGAGGCAGAAGATGTCA 57.756 50.000 0.00 0.00 35.29 3.58
5202 5308 1.901591 TGCAAAAGGAGAGGCAGAAG 58.098 50.000 0.00 0.00 0.00 2.85
5203 5309 2.165167 CATGCAAAAGGAGAGGCAGAA 58.835 47.619 0.00 0.00 39.95 3.02
5205 5311 1.830279 TCATGCAAAAGGAGAGGCAG 58.170 50.000 0.00 0.00 39.95 4.85
5206 5312 1.888512 GTTCATGCAAAAGGAGAGGCA 59.111 47.619 0.00 0.00 41.00 4.75
5207 5313 2.163211 GAGTTCATGCAAAAGGAGAGGC 59.837 50.000 0.00 0.00 0.00 4.70
5208 5314 3.439476 CAGAGTTCATGCAAAAGGAGAGG 59.561 47.826 0.00 0.00 0.00 3.69
5209 5315 3.439476 CCAGAGTTCATGCAAAAGGAGAG 59.561 47.826 0.00 0.00 0.00 3.20
5211 5317 3.152341 ACCAGAGTTCATGCAAAAGGAG 58.848 45.455 0.00 0.00 0.00 3.69
5214 5320 4.217118 AGCTAACCAGAGTTCATGCAAAAG 59.783 41.667 0.00 0.00 37.42 2.27
5216 5322 3.503363 CAGCTAACCAGAGTTCATGCAAA 59.497 43.478 0.00 0.00 37.42 3.68
5220 5326 2.676839 CTGCAGCTAACCAGAGTTCATG 59.323 50.000 0.00 0.00 37.42 3.07
5221 5327 2.938756 GCTGCAGCTAACCAGAGTTCAT 60.939 50.000 31.33 0.00 37.42 2.57
5222 5328 1.609061 GCTGCAGCTAACCAGAGTTCA 60.609 52.381 31.33 0.00 37.42 3.18
5223 5329 1.082690 GCTGCAGCTAACCAGAGTTC 58.917 55.000 31.33 0.00 37.42 3.01
5224 5330 0.397941 TGCTGCAGCTAACCAGAGTT 59.602 50.000 36.61 0.00 42.66 3.01
5225 5331 0.397941 TTGCTGCAGCTAACCAGAGT 59.602 50.000 36.61 0.00 42.66 3.24
5226 5332 1.747709 ATTGCTGCAGCTAACCAGAG 58.252 50.000 36.61 0.00 42.66 3.35
5227 5333 1.814394 CAATTGCTGCAGCTAACCAGA 59.186 47.619 36.61 14.44 42.66 3.86
5228 5334 2.273370 CAATTGCTGCAGCTAACCAG 57.727 50.000 36.61 18.79 42.66 4.00
5239 5345 1.068588 CATGGGGAGATGCAATTGCTG 59.931 52.381 29.37 13.25 42.66 4.41
5240 5346 1.410004 CATGGGGAGATGCAATTGCT 58.590 50.000 29.37 15.95 42.66 3.91
5241 5347 0.249741 GCATGGGGAGATGCAATTGC 60.250 55.000 23.69 23.69 46.77 3.56
5242 5348 3.980583 GCATGGGGAGATGCAATTG 57.019 52.632 0.00 0.00 46.77 2.32
5248 5354 2.934887 TGTTGTATGCATGGGGAGATG 58.065 47.619 10.16 0.00 0.00 2.90
5249 5355 3.889859 ATGTTGTATGCATGGGGAGAT 57.110 42.857 10.16 0.00 0.00 2.75
5250 5356 3.668141 AATGTTGTATGCATGGGGAGA 57.332 42.857 10.16 0.00 0.00 3.71
5251 5357 4.276678 CACTAATGTTGTATGCATGGGGAG 59.723 45.833 10.16 0.00 0.00 4.30
5252 5358 4.206375 CACTAATGTTGTATGCATGGGGA 58.794 43.478 10.16 0.00 0.00 4.81
5253 5359 3.243501 GCACTAATGTTGTATGCATGGGG 60.244 47.826 10.16 0.00 36.30 4.96
5254 5360 3.633525 AGCACTAATGTTGTATGCATGGG 59.366 43.478 10.16 0.00 38.79 4.00
5255 5361 4.906065 AGCACTAATGTTGTATGCATGG 57.094 40.909 10.16 0.00 38.79 3.66
5256 5362 5.643664 ACAAGCACTAATGTTGTATGCATG 58.356 37.500 10.16 0.00 40.01 4.06
5257 5363 5.902613 ACAAGCACTAATGTTGTATGCAT 57.097 34.783 3.79 3.79 38.79 3.96
5258 5364 5.703978 AACAAGCACTAATGTTGTATGCA 57.296 34.783 0.00 0.00 38.29 3.96
5273 5379 0.948678 GTAGCCGTTTCCAACAAGCA 59.051 50.000 0.00 0.00 33.93 3.91
5274 5380 1.197036 GAGTAGCCGTTTCCAACAAGC 59.803 52.381 0.00 0.00 0.00 4.01
5286 5433 4.809426 CACTATACCCTTTTTGAGTAGCCG 59.191 45.833 0.00 0.00 0.00 5.52
5302 5449 4.393062 ACAGCACAATCAACTGCACTATAC 59.607 41.667 0.00 0.00 35.73 1.47
5320 5490 1.153469 TCTTGACACGTGCACAGCA 60.153 52.632 17.22 5.75 35.60 4.41
5321 5491 0.875908 TCTCTTGACACGTGCACAGC 60.876 55.000 17.22 2.97 0.00 4.40
5322 5492 1.258982 GTTCTCTTGACACGTGCACAG 59.741 52.381 17.22 11.24 0.00 3.66
5323 5493 1.286501 GTTCTCTTGACACGTGCACA 58.713 50.000 17.22 13.65 0.00 4.57
5324 5494 1.258982 CTGTTCTCTTGACACGTGCAC 59.741 52.381 17.22 6.82 0.00 4.57
5325 5495 1.570813 CTGTTCTCTTGACACGTGCA 58.429 50.000 17.22 12.06 0.00 4.57
5326 5496 0.233332 GCTGTTCTCTTGACACGTGC 59.767 55.000 17.22 9.30 0.00 5.34
5327 5497 1.524355 CAGCTGTTCTCTTGACACGTG 59.476 52.381 15.48 15.48 0.00 4.49
5328 5498 1.409064 TCAGCTGTTCTCTTGACACGT 59.591 47.619 14.67 0.00 0.00 4.49
5329 5499 2.140065 TCAGCTGTTCTCTTGACACG 57.860 50.000 14.67 0.00 0.00 4.49
5330 5500 3.198068 TGTTCAGCTGTTCTCTTGACAC 58.802 45.455 14.67 0.00 0.00 3.67
5331 5501 3.461061 CTGTTCAGCTGTTCTCTTGACA 58.539 45.455 14.67 6.26 0.00 3.58
5332 5502 2.805099 CCTGTTCAGCTGTTCTCTTGAC 59.195 50.000 14.67 2.13 0.00 3.18
5333 5503 2.224378 CCCTGTTCAGCTGTTCTCTTGA 60.224 50.000 14.67 0.00 0.00 3.02
5334 5504 2.149578 CCCTGTTCAGCTGTTCTCTTG 58.850 52.381 14.67 0.00 0.00 3.02
5335 5505 2.050144 TCCCTGTTCAGCTGTTCTCTT 58.950 47.619 14.67 0.00 0.00 2.85
5336 5506 1.722034 TCCCTGTTCAGCTGTTCTCT 58.278 50.000 14.67 0.00 0.00 3.10
5337 5507 2.354259 CATCCCTGTTCAGCTGTTCTC 58.646 52.381 14.67 3.65 0.00 2.87
5338 5508 1.612726 GCATCCCTGTTCAGCTGTTCT 60.613 52.381 14.67 0.00 0.00 3.01
5339 5509 0.807496 GCATCCCTGTTCAGCTGTTC 59.193 55.000 14.67 8.66 0.00 3.18
5340 5510 0.610232 GGCATCCCTGTTCAGCTGTT 60.610 55.000 14.67 0.00 0.00 3.16
5341 5511 1.001641 GGCATCCCTGTTCAGCTGT 60.002 57.895 14.67 0.00 0.00 4.40
5342 5512 1.751927 GGGCATCCCTGTTCAGCTG 60.752 63.158 7.63 7.63 41.34 4.24
5343 5513 1.792757 TTGGGCATCCCTGTTCAGCT 61.793 55.000 3.27 0.00 45.70 4.24
5344 5514 0.899717 TTTGGGCATCCCTGTTCAGC 60.900 55.000 3.27 0.00 45.70 4.26
5345 5515 0.890683 GTTTGGGCATCCCTGTTCAG 59.109 55.000 3.27 0.00 45.70 3.02
5346 5516 0.541764 GGTTTGGGCATCCCTGTTCA 60.542 55.000 3.27 0.00 45.70 3.18
5347 5517 0.251787 AGGTTTGGGCATCCCTGTTC 60.252 55.000 3.27 0.00 45.70 3.18
5350 5520 0.032813 ATCAGGTTTGGGCATCCCTG 60.033 55.000 3.27 0.00 45.70 4.45
5354 5524 1.322442 GCCTATCAGGTTTGGGCATC 58.678 55.000 0.00 0.00 42.08 3.91
5378 5548 4.714632 TGCTTTACTTCTGGTGCTTAGTT 58.285 39.130 0.00 0.00 0.00 2.24
5379 5549 4.351874 TGCTTTACTTCTGGTGCTTAGT 57.648 40.909 0.00 0.00 0.00 2.24
5399 5614 3.740044 CCGTTGTTGGCTAACACTATG 57.260 47.619 15.94 7.45 45.91 2.23
5416 5632 0.751643 AAAGCTTCCACAAGTGCCGT 60.752 50.000 0.00 0.00 31.45 5.68
5418 5634 1.856802 CAAAAGCTTCCACAAGTGCC 58.143 50.000 0.00 0.00 31.45 5.01
5465 5685 1.001974 AGCATTGTGAAGCGTACAGGA 59.998 47.619 0.00 0.00 35.48 3.86
5472 5692 0.451628 CGTGTCAGCATTGTGAAGCG 60.452 55.000 0.00 0.00 35.48 4.68
5517 5752 2.915604 TCTCCCCTTCTCTGCTTTCAAT 59.084 45.455 0.00 0.00 0.00 2.57
5518 5753 2.304180 CTCTCCCCTTCTCTGCTTTCAA 59.696 50.000 0.00 0.00 0.00 2.69
5548 5783 4.036734 TCCAGAAAAGACATTGAAGTGTGC 59.963 41.667 0.00 0.00 31.16 4.57
5570 5805 3.564644 CCTCATCTGTGCTTTCATGGATC 59.435 47.826 0.00 0.00 0.00 3.36
5662 5905 2.885554 GCAACATCAATGGAACTCCCCT 60.886 50.000 0.00 0.00 34.29 4.79
5682 5925 2.000447 GTAAGGTCCATGTCTTCGTGC 59.000 52.381 0.00 0.00 0.00 5.34
5699 5942 5.810587 GCTACAAATCGTCTTCCATGAGTAA 59.189 40.000 0.00 0.00 0.00 2.24
5704 5947 4.318333 CGATGCTACAAATCGTCTTCCATG 60.318 45.833 0.00 0.00 41.52 3.66
5713 5956 1.663695 AACCCCGATGCTACAAATCG 58.336 50.000 0.00 0.00 45.08 3.34
5725 5968 4.533311 AGGTAAGAGTTAATCAAACCCCGA 59.467 41.667 0.94 0.00 39.03 5.14
5732 5975 8.537858 GGAGGTAAGAAGGTAAGAGTTAATCAA 58.462 37.037 0.00 0.00 0.00 2.57
5733 5976 7.125356 GGGAGGTAAGAAGGTAAGAGTTAATCA 59.875 40.741 0.00 0.00 0.00 2.57
5734 5977 7.125356 TGGGAGGTAAGAAGGTAAGAGTTAATC 59.875 40.741 0.00 0.00 0.00 1.75
5735 5978 6.964086 TGGGAGGTAAGAAGGTAAGAGTTAAT 59.036 38.462 0.00 0.00 0.00 1.40
5736 5979 6.325352 TGGGAGGTAAGAAGGTAAGAGTTAA 58.675 40.000 0.00 0.00 0.00 2.01
5737 5980 5.907421 TGGGAGGTAAGAAGGTAAGAGTTA 58.093 41.667 0.00 0.00 0.00 2.24
5738 5981 4.759953 TGGGAGGTAAGAAGGTAAGAGTT 58.240 43.478 0.00 0.00 0.00 3.01
5739 5982 4.415224 TGGGAGGTAAGAAGGTAAGAGT 57.585 45.455 0.00 0.00 0.00 3.24
5740 5983 6.782988 TCATATGGGAGGTAAGAAGGTAAGAG 59.217 42.308 2.13 0.00 0.00 2.85
5741 5984 6.689561 TCATATGGGAGGTAAGAAGGTAAGA 58.310 40.000 2.13 0.00 0.00 2.10
5742 5985 6.996180 TCATATGGGAGGTAAGAAGGTAAG 57.004 41.667 2.13 0.00 0.00 2.34
5743 5986 7.758820 TTTCATATGGGAGGTAAGAAGGTAA 57.241 36.000 2.13 0.00 0.00 2.85
5744 5987 7.626084 TCTTTTCATATGGGAGGTAAGAAGGTA 59.374 37.037 2.13 0.00 0.00 3.08
5745 5988 6.447084 TCTTTTCATATGGGAGGTAAGAAGGT 59.553 38.462 2.13 0.00 0.00 3.50
5746 5989 6.900194 TCTTTTCATATGGGAGGTAAGAAGG 58.100 40.000 2.13 0.00 0.00 3.46
5747 5990 6.995091 CCTCTTTTCATATGGGAGGTAAGAAG 59.005 42.308 18.19 5.20 38.83 2.85
5748 5991 6.126478 CCCTCTTTTCATATGGGAGGTAAGAA 60.126 42.308 21.53 0.88 41.20 2.52
5749 5992 5.369699 CCCTCTTTTCATATGGGAGGTAAGA 59.630 44.000 21.53 13.15 41.20 2.10
5750 5993 5.456763 CCCCTCTTTTCATATGGGAGGTAAG 60.457 48.000 21.53 13.05 41.20 2.34
5751 5994 4.415512 CCCCTCTTTTCATATGGGAGGTAA 59.584 45.833 21.53 2.55 41.20 2.85
5752 5995 3.980698 CCCCTCTTTTCATATGGGAGGTA 59.019 47.826 21.53 0.00 41.20 3.08
5753 5996 2.785857 CCCCTCTTTTCATATGGGAGGT 59.214 50.000 21.53 0.00 41.20 3.85
5754 5997 2.108952 CCCCCTCTTTTCATATGGGAGG 59.891 54.545 18.90 18.90 42.10 4.30
5755 5998 2.785857 ACCCCCTCTTTTCATATGGGAG 59.214 50.000 2.13 6.02 40.23 4.30
5756 5999 2.871796 ACCCCCTCTTTTCATATGGGA 58.128 47.619 2.13 0.00 40.23 4.37
5757 6000 3.980698 TCTACCCCCTCTTTTCATATGGG 59.019 47.826 2.13 0.00 37.68 4.00
5758 6001 5.310594 TGATCTACCCCCTCTTTTCATATGG 59.689 44.000 2.13 0.00 0.00 2.74
5759 6002 6.439636 TGATCTACCCCCTCTTTTCATATG 57.560 41.667 0.00 0.00 0.00 1.78
5760 6003 7.465900 TTTGATCTACCCCCTCTTTTCATAT 57.534 36.000 0.00 0.00 0.00 1.78
5761 6004 6.901615 TTTGATCTACCCCCTCTTTTCATA 57.098 37.500 0.00 0.00 0.00 2.15
5762 6005 5.796502 TTTGATCTACCCCCTCTTTTCAT 57.203 39.130 0.00 0.00 0.00 2.57
5763 6006 5.163034 TGTTTTGATCTACCCCCTCTTTTCA 60.163 40.000 0.00 0.00 0.00 2.69
5764 6007 5.183331 GTGTTTTGATCTACCCCCTCTTTTC 59.817 44.000 0.00 0.00 0.00 2.29
5765 6008 5.077564 GTGTTTTGATCTACCCCCTCTTTT 58.922 41.667 0.00 0.00 0.00 2.27
5766 6009 4.354087 AGTGTTTTGATCTACCCCCTCTTT 59.646 41.667 0.00 0.00 0.00 2.52
5767 6010 3.916989 AGTGTTTTGATCTACCCCCTCTT 59.083 43.478 0.00 0.00 0.00 2.85
5768 6011 3.532102 AGTGTTTTGATCTACCCCCTCT 58.468 45.455 0.00 0.00 0.00 3.69
5769 6012 4.470304 AGTAGTGTTTTGATCTACCCCCTC 59.530 45.833 0.00 0.00 35.90 4.30
5770 6013 4.436079 AGTAGTGTTTTGATCTACCCCCT 58.564 43.478 0.00 0.00 35.90 4.79
5771 6014 4.838904 AGTAGTGTTTTGATCTACCCCC 57.161 45.455 0.00 0.00 35.90 5.40
5772 6015 8.265764 AGAAATAGTAGTGTTTTGATCTACCCC 58.734 37.037 0.00 0.00 35.90 4.95
5773 6016 9.668497 AAGAAATAGTAGTGTTTTGATCTACCC 57.332 33.333 0.00 0.00 35.90 3.69
5777 6020 9.965902 ATGGAAGAAATAGTAGTGTTTTGATCT 57.034 29.630 0.00 0.00 0.00 2.75
5779 6022 8.883731 CGATGGAAGAAATAGTAGTGTTTTGAT 58.116 33.333 0.00 0.00 0.00 2.57
5780 6023 7.333423 CCGATGGAAGAAATAGTAGTGTTTTGA 59.667 37.037 0.00 0.00 0.00 2.69
5781 6024 7.414098 CCCGATGGAAGAAATAGTAGTGTTTTG 60.414 40.741 0.00 0.00 0.00 2.44
5782 6025 6.598064 CCCGATGGAAGAAATAGTAGTGTTTT 59.402 38.462 0.00 0.00 0.00 2.43
5783 6026 6.113411 CCCGATGGAAGAAATAGTAGTGTTT 58.887 40.000 0.00 0.00 0.00 2.83
5784 6027 5.396436 CCCCGATGGAAGAAATAGTAGTGTT 60.396 44.000 0.00 0.00 35.39 3.32
5785 6028 4.101119 CCCCGATGGAAGAAATAGTAGTGT 59.899 45.833 0.00 0.00 35.39 3.55
5786 6029 4.632153 CCCCGATGGAAGAAATAGTAGTG 58.368 47.826 0.00 0.00 35.39 2.74
5787 6030 4.957684 CCCCGATGGAAGAAATAGTAGT 57.042 45.455 0.00 0.00 35.39 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.