Multiple sequence alignment - TraesCS4A01G080600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G080600 chr4A 100.000 6348 0 0 1 6348 83326622 83320275 0.000000e+00 11723.0
1 TraesCS4A01G080600 chr4A 93.220 295 17 2 3419 3710 615046623 615046329 1.260000e-116 431.0
2 TraesCS4A01G080600 chr4A 93.174 293 17 2 3419 3708 615096236 615095944 1.640000e-115 427.0
3 TraesCS4A01G080600 chr4A 92.642 299 18 3 3416 3710 615098457 615098159 1.640000e-115 427.0
4 TraesCS4A01G080600 chr4A 92.881 295 18 2 3419 3710 615084738 615084444 5.880000e-115 425.0
5 TraesCS4A01G080600 chr4A 92.833 293 18 2 3419 3708 615079051 615078759 7.610000e-114 422.0
6 TraesCS4A01G080600 chr4A 92.308 299 19 3 3416 3710 615080532 615080234 7.610000e-114 422.0
7 TraesCS4A01G080600 chr4A 92.542 295 19 2 3419 3710 615096975 615096681 2.740000e-113 420.0
8 TraesCS4A01G080600 chr4A 92.256 297 18 4 3419 3710 615061582 615061286 3.540000e-112 416.0
9 TraesCS4A01G080600 chr4A 92.203 295 20 2 3419 3710 615056993 615056699 1.270000e-111 414.0
10 TraesCS4A01G080600 chr4A 86.809 235 24 5 1414 1648 175693004 175692777 8.170000e-64 255.0
11 TraesCS4A01G080600 chr4A 82.716 81 8 3 455 535 580894689 580894763 4.110000e-07 67.6
12 TraesCS4A01G080600 chr4A 100.000 32 0 0 1983 2014 513999249 513999218 6.870000e-05 60.2
13 TraesCS4A01G080600 chr4D 92.503 2201 118 28 4156 6348 380458140 380460301 0.000000e+00 3107.0
14 TraesCS4A01G080600 chr4D 91.508 1154 46 30 543 1691 380455259 380456365 0.000000e+00 1541.0
15 TraesCS4A01G080600 chr4D 89.500 1000 94 7 2014 3011 380456933 380457923 0.000000e+00 1254.0
16 TraesCS4A01G080600 chr4D 88.768 276 9 5 5 263 380454730 380455000 1.030000e-82 318.0
17 TraesCS4A01G080600 chr4D 94.972 179 7 2 1819 1996 380456699 380456876 4.850000e-71 279.0
18 TraesCS4A01G080600 chr4D 90.323 93 6 1 6063 6155 380460109 380460198 1.120000e-22 119.0
19 TraesCS4A01G080600 chr4B 92.567 1453 63 20 521 1967 467908724 467910137 0.000000e+00 2043.0
20 TraesCS4A01G080600 chr4B 89.298 1495 100 30 4156 5607 467911356 467912833 0.000000e+00 1820.0
21 TraesCS4A01G080600 chr4B 93.590 702 36 4 5643 6344 467914779 467915471 0.000000e+00 1038.0
22 TraesCS4A01G080600 chr4B 94.681 470 24 1 2014 2483 467910484 467910952 0.000000e+00 728.0
23 TraesCS4A01G080600 chr4B 91.589 214 10 3 43 256 467907947 467908152 8.050000e-74 289.0
24 TraesCS4A01G080600 chr4B 84.727 275 31 7 1373 1647 567696473 567696210 1.360000e-66 265.0
25 TraesCS4A01G080600 chr4B 92.208 77 3 1 6079 6155 467915299 467915372 8.700000e-19 106.0
26 TraesCS4A01G080600 chr4B 100.000 40 0 0 6 45 467907895 467907934 2.450000e-09 75.0
27 TraesCS4A01G080600 chr4B 91.489 47 4 0 458 504 4707067 4707021 1.480000e-06 65.8
28 TraesCS4A01G080600 chr2A 90.241 789 54 14 5576 6344 14939299 14940084 0.000000e+00 1009.0
29 TraesCS4A01G080600 chr2A 89.011 91 9 1 265 355 549290363 549290274 1.870000e-20 111.0
30 TraesCS4A01G080600 chr2A 87.234 94 11 1 264 357 747272265 747272173 8.700000e-19 106.0
31 TraesCS4A01G080600 chr2A 100.000 32 0 0 1983 2014 24179891 24179922 6.870000e-05 60.2
32 TraesCS4A01G080600 chr6B 93.046 417 15 5 3701 4104 708587165 708586750 1.180000e-166 597.0
33 TraesCS4A01G080600 chr6B 94.393 321 10 1 3098 3418 708587466 708587154 2.660000e-133 486.0
34 TraesCS4A01G080600 chr6B 87.204 422 32 14 3701 4102 634569749 634570168 1.610000e-125 460.0
35 TraesCS4A01G080600 chr6B 86.486 296 26 8 3100 3391 98688688 98688403 4.780000e-81 313.0
36 TraesCS4A01G080600 chr6B 86.149 296 27 8 3100 3391 98676536 98676251 2.220000e-79 307.0
37 TraesCS4A01G080600 chr6B 85.479 303 29 9 3100 3397 98659097 98658805 1.030000e-77 302.0
38 TraesCS4A01G080600 chr6B 85.473 296 29 8 3100 3391 98516053 98515768 4.810000e-76 296.0
39 TraesCS4A01G080600 chr6B 100.000 30 0 0 1984 2013 702248520 702248491 8.890000e-04 56.5
40 TraesCS4A01G080600 chr3B 92.566 417 14 3 3701 4102 251180705 251181119 3.300000e-162 582.0
41 TraesCS4A01G080600 chr3B 93.103 319 14 1 3100 3418 251180406 251180716 1.610000e-125 460.0
42 TraesCS4A01G080600 chr3B 87.209 86 8 3 265 350 381763008 381763090 1.880000e-15 95.3
43 TraesCS4A01G080600 chr3B 100.000 32 0 0 1982 2013 784688117 784688086 6.870000e-05 60.2
44 TraesCS4A01G080600 chr7B 96.865 319 10 0 3784 4102 103889854 103890172 9.370000e-148 534.0
45 TraesCS4A01G080600 chr7B 93.103 319 17 1 3100 3418 721313933 721313620 4.480000e-126 462.0
46 TraesCS4A01G080600 chr7B 95.699 279 12 0 3101 3379 103889142 103889420 3.490000e-122 449.0
47 TraesCS4A01G080600 chr7B 96.078 153 6 0 3950 4102 721311583 721311431 3.800000e-62 250.0
48 TraesCS4A01G080600 chr7B 95.238 126 4 2 3844 3968 721313230 721313106 1.400000e-46 198.0
49 TraesCS4A01G080600 chr7B 97.778 45 1 0 3768 3812 721313275 721313231 1.900000e-10 78.7
50 TraesCS4A01G080600 chr7B 100.000 32 0 0 1982 2013 145374877 145374846 6.870000e-05 60.2
51 TraesCS4A01G080600 chr3D 86.111 396 34 11 3705 4098 263345957 263346333 2.130000e-109 407.0
52 TraesCS4A01G080600 chr5B 88.750 240 27 0 3092 3331 369783046 369782807 1.730000e-75 294.0
53 TraesCS4A01G080600 chr5B 88.421 95 9 2 4004 4097 438793960 438794053 5.200000e-21 113.0
54 TraesCS4A01G080600 chr5B 91.489 47 4 0 457 503 532360008 532359962 1.480000e-06 65.8
55 TraesCS4A01G080600 chr5B 93.023 43 3 0 455 497 324299772 324299814 5.310000e-06 63.9
56 TraesCS4A01G080600 chr3A 87.072 263 20 3 3836 4098 303553133 303553381 1.040000e-72 285.0
57 TraesCS4A01G080600 chr3A 100.000 32 0 0 1982 2013 374427549 374427580 6.870000e-05 60.2
58 TraesCS4A01G080600 chr2D 78.289 304 49 13 3803 4098 13939373 13939667 5.060000e-41 180.0
59 TraesCS4A01G080600 chr2D 87.234 94 11 1 264 357 617101151 617101059 8.700000e-19 106.0
60 TraesCS4A01G080600 chr2D 89.873 79 7 1 265 343 14768312 14768389 4.050000e-17 100.0
61 TraesCS4A01G080600 chr7D 87.912 91 9 2 265 354 117755302 117755213 8.700000e-19 106.0
62 TraesCS4A01G080600 chr7D 100.000 40 0 0 458 497 263892661 263892700 2.450000e-09 75.0
63 TraesCS4A01G080600 chr1A 87.778 90 10 1 265 354 395177512 395177600 3.130000e-18 104.0
64 TraesCS4A01G080600 chr6D 88.372 86 9 1 265 350 380573314 380573398 1.130000e-17 102.0
65 TraesCS4A01G080600 chr6D 88.525 61 5 2 444 504 31762110 31762052 8.830000e-09 73.1
66 TraesCS4A01G080600 chr6D 86.885 61 6 2 444 504 23431995 23431937 4.110000e-07 67.6
67 TraesCS4A01G080600 chr5D 86.585 82 10 1 265 346 213477932 213478012 8.770000e-14 89.8
68 TraesCS4A01G080600 chr5D 83.133 83 7 2 453 535 310276719 310276644 1.140000e-07 69.4
69 TraesCS4A01G080600 chr1D 95.122 41 2 0 458 498 155342477 155342517 1.480000e-06 65.8
70 TraesCS4A01G080600 chr1B 100.000 33 0 0 1981 2013 133451839 133451807 1.910000e-05 62.1
71 TraesCS4A01G080600 chr2B 94.737 38 2 0 1976 2013 229511484 229511447 6.870000e-05 60.2
72 TraesCS4A01G080600 chrUn 94.595 37 2 0 1977 2013 308892607 308892643 2.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G080600 chr4A 83320275 83326622 6347 True 11723.000000 11723 100.000000 1 6348 1 chr4A.!!$R1 6347
1 TraesCS4A01G080600 chr4A 615095944 615098457 2513 True 424.666667 427 92.786000 3416 3710 3 chr4A.!!$R8 294
2 TraesCS4A01G080600 chr4A 615078759 615084738 5979 True 423.000000 425 92.674000 3416 3710 3 chr4A.!!$R7 294
3 TraesCS4A01G080600 chr4D 380454730 380460301 5571 False 1103.000000 3107 91.262333 5 6348 6 chr4D.!!$F1 6343
4 TraesCS4A01G080600 chr4B 467907895 467915471 7576 False 871.285714 2043 93.419000 6 6344 7 chr4B.!!$F1 6338
5 TraesCS4A01G080600 chr2A 14939299 14940084 785 False 1009.000000 1009 90.241000 5576 6344 1 chr2A.!!$F1 768
6 TraesCS4A01G080600 chr6B 708586750 708587466 716 True 541.500000 597 93.719500 3098 4104 2 chr6B.!!$R6 1006
7 TraesCS4A01G080600 chr3B 251180406 251181119 713 False 521.000000 582 92.834500 3100 4102 2 chr3B.!!$F2 1002
8 TraesCS4A01G080600 chr7B 103889142 103890172 1030 False 491.500000 534 96.282000 3101 4102 2 chr7B.!!$F1 1001
9 TraesCS4A01G080600 chr7B 721311431 721313933 2502 True 247.175000 462 95.549250 3100 4102 4 chr7B.!!$R2 1002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 142 0.399949 ATATGCCTTCTCCCACCGGA 60.400 55.0 9.46 0.00 36.45 5.14 F
1376 1815 0.761802 ATAGCTAGTCTTGGCTGGCC 59.238 55.0 6.95 4.43 42.86 5.36 F
1452 1891 0.034756 AGCTTGATGGTGTGCGTGTA 59.965 50.0 0.00 0.00 0.00 2.90 F
1526 1965 0.036732 ATTCGGTGACACCTGCATGT 59.963 50.0 22.14 0.00 35.66 3.21 F
3328 4294 0.103937 CCACGCCTCATCTCTTCTCC 59.896 60.0 0.00 0.00 0.00 3.71 F
4144 11593 0.382873 TTGTTTGCTCTGCTGCTGTG 59.617 50.0 0.00 2.51 0.00 3.66 F
5063 12636 0.102120 TTTTGTTTCAGCCGGCACAG 59.898 50.0 31.54 18.31 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1450 1889 0.373716 CCAAGCGGCGAATTCAGTAC 59.626 55.0 12.98 0.00 0.00 2.73 R
3071 4037 0.240945 AAAAATTGGCGCAGTCTCCG 59.759 50.0 10.83 0.00 0.00 4.63 R
3129 4095 0.618981 GACAAAACCCCTCCGATCCT 59.381 55.0 0.00 0.00 0.00 3.24 R
3525 4491 0.393448 TGTTCGTGATTTCGTCCCCA 59.607 50.0 0.00 0.00 0.00 4.96 R
4216 11769 0.034186 TGGTTCCCATGACCATGAGC 60.034 55.0 11.28 2.68 42.06 4.26 R
5175 12758 0.038526 GAACTCCGCTTCTTCGACCA 60.039 55.0 0.00 0.00 0.00 4.02 R
6075 15606 0.803117 ACACAGATGACGACGACGAT 59.197 50.0 15.32 0.00 42.66 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 81 2.556287 GTCGTCGCTTTTGGCCAG 59.444 61.111 5.11 0.00 37.74 4.85
126 142 0.399949 ATATGCCTTCTCCCACCGGA 60.400 55.000 9.46 0.00 36.45 5.14
160 177 4.038402 CCACATCCAAACAAAAAGCTCTCT 59.962 41.667 0.00 0.00 0.00 3.10
166 183 4.321527 CCAAACAAAAAGCTCTCTCCATCC 60.322 45.833 0.00 0.00 0.00 3.51
179 196 4.784838 TCTCTCCATCCATCCTTTCTTTCA 59.215 41.667 0.00 0.00 0.00 2.69
241 260 1.302192 CCCGGACCGTTTCACATGT 60.302 57.895 13.94 0.00 0.00 3.21
246 265 3.425625 CCGGACCGTTTCACATGTAAATG 60.426 47.826 13.94 5.66 0.00 2.32
252 271 5.121768 ACCGTTTCACATGTAAATGCTACTC 59.878 40.000 0.00 0.00 0.00 2.59
263 282 1.794714 ATGCTACTCCCTCCGTTCAT 58.205 50.000 0.00 0.00 0.00 2.57
267 333 3.709653 TGCTACTCCCTCCGTTCATAAAT 59.290 43.478 0.00 0.00 0.00 1.40
275 341 5.104527 TCCCTCCGTTCATAAATGAGTGAAT 60.105 40.000 0.00 0.00 38.19 2.57
354 421 9.489084 TCCATATATTTATGAACGAAGGAAGTG 57.511 33.333 4.88 0.00 37.94 3.16
372 439 3.567397 AGTGCTCCGTGATATTACCTCT 58.433 45.455 0.00 0.00 0.00 3.69
374 441 2.035961 TGCTCCGTGATATTACCTCTGC 59.964 50.000 0.00 0.00 0.00 4.26
502 932 8.997621 ATAAAAGCGTTTAGATCACTGAAGTA 57.002 30.769 10.55 0.00 32.76 2.24
503 933 7.724305 AAAAGCGTTTAGATCACTGAAGTAA 57.276 32.000 0.00 0.00 0.00 2.24
504 934 6.707599 AAGCGTTTAGATCACTGAAGTAAC 57.292 37.500 0.00 0.00 0.00 2.50
505 935 5.779922 AGCGTTTAGATCACTGAAGTAACA 58.220 37.500 0.00 0.00 0.00 2.41
507 937 6.874134 AGCGTTTAGATCACTGAAGTAACATT 59.126 34.615 0.00 0.00 0.00 2.71
508 938 8.033038 AGCGTTTAGATCACTGAAGTAACATTA 58.967 33.333 0.00 0.00 0.00 1.90
510 940 9.355215 CGTTTAGATCACTGAAGTAACATTAGT 57.645 33.333 0.00 0.00 0.00 2.24
519 949 9.307121 CACTGAAGTAACATTAGTGATCTAAGG 57.693 37.037 0.00 0.00 40.80 2.69
520 950 8.478877 ACTGAAGTAACATTAGTGATCTAAGGG 58.521 37.037 0.00 0.00 40.75 3.95
521 951 7.272978 TGAAGTAACATTAGTGATCTAAGGGC 58.727 38.462 0.00 0.00 40.75 5.19
522 952 7.125811 TGAAGTAACATTAGTGATCTAAGGGCT 59.874 37.037 0.00 0.00 40.75 5.19
523 953 7.439108 AGTAACATTAGTGATCTAAGGGCTT 57.561 36.000 0.00 0.00 40.75 4.35
524 954 7.862675 AGTAACATTAGTGATCTAAGGGCTTT 58.137 34.615 0.00 0.00 40.75 3.51
525 955 8.329502 AGTAACATTAGTGATCTAAGGGCTTTT 58.670 33.333 0.00 0.00 40.75 2.27
526 956 9.609346 GTAACATTAGTGATCTAAGGGCTTTTA 57.391 33.333 0.00 0.00 40.75 1.52
726 1162 4.051237 ACGTTCGGGAAGTAGTACAAAAC 58.949 43.478 2.52 0.00 0.00 2.43
733 1169 4.142752 GGGAAGTAGTACAAAACAATCCGC 60.143 45.833 2.52 0.00 0.00 5.54
753 1189 1.376037 CGGGAGAGAACAAGTGGCC 60.376 63.158 0.00 0.00 0.00 5.36
905 1344 4.201951 GCAAAGCGATCGGGAAGA 57.798 55.556 18.30 0.00 0.00 2.87
919 1358 1.068250 GAAGAGCTTCCCGATCCCG 59.932 63.158 0.00 0.00 33.64 5.14
1094 1533 1.228737 GGGAGGAGGAGGAGGATCG 60.229 68.421 0.00 0.00 34.37 3.69
1144 1583 3.403558 GGGAGCTGGTGGAGGACC 61.404 72.222 0.00 0.00 46.37 4.46
1333 1772 4.600012 GTACGTACGTACTATGTGGTGT 57.400 45.455 38.40 12.79 45.30 4.16
1343 1782 2.216046 CTATGTGGTGTGCTATGGCTG 58.784 52.381 1.68 0.00 39.59 4.85
1351 1790 3.580193 GCTATGGCTGCTGCACCG 61.580 66.667 17.89 3.76 41.91 4.94
1353 1792 3.390183 CTATGGCTGCTGCACCGGA 62.390 63.158 17.89 0.00 41.91 5.14
1369 1808 2.952978 ACCGGACAGATAGCTAGTCTTG 59.047 50.000 9.46 4.02 32.98 3.02
1376 1815 0.761802 ATAGCTAGTCTTGGCTGGCC 59.238 55.000 6.95 4.43 42.86 5.36
1388 1827 2.664185 CTGGCCGCCATGATCTCG 60.664 66.667 13.86 0.00 30.82 4.04
1410 1849 1.228063 CTTGAGGGGCCATGATCCG 60.228 63.158 4.39 0.00 0.00 4.18
1411 1850 3.420206 TTGAGGGGCCATGATCCGC 62.420 63.158 4.39 11.37 36.86 5.54
1447 1886 1.527034 TTCTGAGCTTGATGGTGTGC 58.473 50.000 0.00 0.00 0.00 4.57
1449 1888 0.952497 CTGAGCTTGATGGTGTGCGT 60.952 55.000 0.00 0.00 0.00 5.24
1450 1889 1.229975 TGAGCTTGATGGTGTGCGTG 61.230 55.000 0.00 0.00 0.00 5.34
1451 1890 1.227943 AGCTTGATGGTGTGCGTGT 60.228 52.632 0.00 0.00 0.00 4.49
1452 1891 0.034756 AGCTTGATGGTGTGCGTGTA 59.965 50.000 0.00 0.00 0.00 2.90
1455 1894 1.460743 CTTGATGGTGTGCGTGTACTG 59.539 52.381 0.00 0.00 0.00 2.74
1457 1896 1.069358 TGATGGTGTGCGTGTACTGAA 59.931 47.619 0.00 0.00 0.00 3.02
1462 1901 0.787787 TGTGCGTGTACTGAATTCGC 59.212 50.000 0.04 0.00 45.70 4.70
1488 1927 1.885887 GGCACATAAAACTCCACAGCA 59.114 47.619 0.00 0.00 0.00 4.41
1526 1965 0.036732 ATTCGGTGACACCTGCATGT 59.963 50.000 22.14 0.00 35.66 3.21
1531 1970 1.350193 GTGACACCTGCATGTACTCG 58.650 55.000 0.00 0.00 31.24 4.18
1599 2038 1.906574 TCCAACCGCTATTTCTGTCCT 59.093 47.619 0.00 0.00 0.00 3.85
1655 2094 5.871539 CATGAATGCTTTTTATTTGCCACC 58.128 37.500 0.00 0.00 0.00 4.61
1663 2102 3.383620 TTTATTTGCCACCTTGCAGTG 57.616 42.857 0.00 0.00 43.21 3.66
1698 2137 9.871238 ACGATGTGTTGAACTCTTTATAATAGT 57.129 29.630 0.00 0.00 0.00 2.12
1720 2159 7.992180 AGTTGTTCAAAAATAACTGCAGAAG 57.008 32.000 23.35 0.00 42.93 2.85
1754 2193 9.010366 GTTTTGTCAGACAAACAAGAAATAGTC 57.990 33.333 25.46 0.00 46.53 2.59
1783 2222 4.004982 TGGTTAAAACAGCGGGATTACTC 58.995 43.478 0.00 0.00 0.00 2.59
1784 2223 4.259356 GGTTAAAACAGCGGGATTACTCT 58.741 43.478 0.00 0.00 0.00 3.24
1800 2239 7.721286 GATTACTCTAATCCACCTCAATGTG 57.279 40.000 0.00 0.00 38.85 3.21
1841 2486 1.817740 GCAGGTGTGTGTGGGTGTATT 60.818 52.381 0.00 0.00 0.00 1.89
1996 2642 7.070322 ACACCTAACAAGTACTTCCTCTGTAAA 59.930 37.037 4.77 0.00 0.00 2.01
1997 2643 7.384387 CACCTAACAAGTACTTCCTCTGTAAAC 59.616 40.741 4.77 0.00 0.00 2.01
1998 2644 7.070322 ACCTAACAAGTACTTCCTCTGTAAACA 59.930 37.037 4.77 0.00 0.00 2.83
1999 2645 7.929785 CCTAACAAGTACTTCCTCTGTAAACAA 59.070 37.037 4.77 0.00 0.00 2.83
2000 2646 9.321562 CTAACAAGTACTTCCTCTGTAAACAAA 57.678 33.333 4.77 0.00 0.00 2.83
2002 2648 9.841295 AACAAGTACTTCCTCTGTAAACAAATA 57.159 29.630 4.77 0.00 0.00 1.40
2009 2655 9.384764 ACTTCCTCTGTAAACAAATATAAGAGC 57.615 33.333 0.00 0.00 0.00 4.09
2010 2656 8.420374 TTCCTCTGTAAACAAATATAAGAGCG 57.580 34.615 0.00 0.00 0.00 5.03
2032 2996 5.263185 CGTTCTTCCCTACAAATAATTGCG 58.737 41.667 0.00 0.00 40.34 4.85
2052 3016 5.122519 TGCGTTCATTCTTGCAAGGATATA 58.877 37.500 25.73 11.74 33.80 0.86
2055 3019 7.095229 TGCGTTCATTCTTGCAAGGATATATAC 60.095 37.037 25.73 15.81 33.80 1.47
2060 3024 8.246871 TCATTCTTGCAAGGATATATACGAGAG 58.753 37.037 25.73 7.26 0.00 3.20
2162 3126 2.772287 GTTCTATGGGCCATACAGAGC 58.228 52.381 22.26 18.03 0.00 4.09
2291 3256 4.221262 TCCTACACTAAAAGCTTTAGCCGA 59.779 41.667 13.10 0.00 43.38 5.54
2292 3257 4.329256 CCTACACTAAAAGCTTTAGCCGAC 59.671 45.833 13.10 0.00 43.38 4.79
2302 3267 4.501071 AGCTTTAGCCGACGAAGATTTTA 58.499 39.130 0.00 0.00 43.38 1.52
2332 3297 2.485122 GGGATTCAGGTTTGCGCG 59.515 61.111 0.00 0.00 0.00 6.86
2392 3357 1.157276 CCATTGGTGGTTTGGGGGA 59.843 57.895 0.00 0.00 40.83 4.81
2419 3384 5.564550 ACCTAAAACATCACAATCAGAGCT 58.435 37.500 0.00 0.00 0.00 4.09
2453 3418 1.313772 CTCATCCTCGTCACCTCGAT 58.686 55.000 0.00 0.00 39.12 3.59
2465 3430 5.124297 TCGTCACCTCGATCATTTACTACAA 59.876 40.000 0.00 0.00 34.85 2.41
2497 3462 0.529773 TCTTCCGAAATCGATGCCCG 60.530 55.000 0.00 2.95 43.02 6.13
2498 3463 2.105960 CTTCCGAAATCGATGCCCGC 62.106 60.000 0.00 0.00 43.02 6.13
2500 3465 4.000557 CGAAATCGATGCCCGCCG 62.001 66.667 0.00 0.00 43.02 6.46
2517 3482 2.726373 CGCCGATCTATCTGACTTAGCG 60.726 54.545 0.00 0.00 0.00 4.26
2518 3483 2.226912 GCCGATCTATCTGACTTAGCGT 59.773 50.000 0.00 0.00 0.00 5.07
2526 3491 2.475818 TCTGACTTAGCGTCGCAAAAA 58.524 42.857 21.09 9.55 45.87 1.94
2527 3492 2.220133 TCTGACTTAGCGTCGCAAAAAC 59.780 45.455 21.09 8.26 45.87 2.43
2537 3502 4.851558 AGCGTCGCAAAAACAAAATCTATC 59.148 37.500 21.09 0.00 0.00 2.08
2544 3509 9.906660 TCGCAAAAACAAAATCTATCTAATGTT 57.093 25.926 0.00 0.00 32.78 2.71
2564 3529 4.209080 TGTTCGCATGAATGATCGTATCAC 59.791 41.667 0.00 0.00 43.01 3.06
2566 3531 4.367450 TCGCATGAATGATCGTATCACAA 58.633 39.130 0.00 0.00 43.01 3.33
2568 3533 4.448891 GCATGAATGATCGTATCACAACG 58.551 43.478 0.00 0.00 43.01 4.10
2592 3557 3.623060 GTGGTGAACAGCGATATTGATGT 59.377 43.478 8.08 8.08 40.85 3.06
2599 3564 0.235665 GCGATATTGATGTGCCCGTG 59.764 55.000 0.00 0.00 0.00 4.94
2621 3586 1.383523 GCCCTGAGTTAGTGGAATGC 58.616 55.000 0.00 0.00 0.00 3.56
2652 3617 6.265196 TCCAACTAACAACGGAGACTAGTTTA 59.735 38.462 0.00 0.00 31.96 2.01
2653 3618 7.039504 TCCAACTAACAACGGAGACTAGTTTAT 60.040 37.037 0.00 0.00 31.96 1.40
2662 3627 5.008811 ACGGAGACTAGTTTATCTGAATCGG 59.991 44.000 15.53 0.00 0.00 4.18
2663 3628 5.224135 GGAGACTAGTTTATCTGAATCGGC 58.776 45.833 0.00 0.00 0.00 5.54
2664 3629 5.221263 GGAGACTAGTTTATCTGAATCGGCA 60.221 44.000 0.00 0.00 0.00 5.69
2669 3634 5.998454 AGTTTATCTGAATCGGCATTGAG 57.002 39.130 0.00 0.00 0.00 3.02
2697 3662 8.956533 AAGGCACATGTTAAAACAGTTTTAAT 57.043 26.923 26.62 14.12 44.25 1.40
2699 3664 9.389755 AGGCACATGTTAAAACAGTTTTAATTT 57.610 25.926 26.62 17.35 44.25 1.82
2714 3679 6.041637 AGTTTTAATTTGGAAGAGGGGTGAAC 59.958 38.462 0.00 0.00 0.00 3.18
2727 3692 1.763545 GGGTGAACTGGGAGAGGTATC 59.236 57.143 0.00 0.00 0.00 2.24
2729 3694 2.168728 GGTGAACTGGGAGAGGTATCAC 59.831 54.545 0.00 0.00 36.01 3.06
2735 3700 3.011821 ACTGGGAGAGGTATCACTTCTGA 59.988 47.826 0.00 0.00 34.47 3.27
2743 3708 5.045286 AGAGGTATCACTTCTGAGCCAAAAT 60.045 40.000 0.00 0.00 32.96 1.82
2744 3709 6.156949 AGAGGTATCACTTCTGAGCCAAAATA 59.843 38.462 0.00 0.00 32.96 1.40
2745 3710 6.721318 AGGTATCACTTCTGAGCCAAAATAA 58.279 36.000 0.00 0.00 31.18 1.40
2746 3711 7.175104 AGGTATCACTTCTGAGCCAAAATAAA 58.825 34.615 0.00 0.00 31.18 1.40
2747 3712 7.836183 AGGTATCACTTCTGAGCCAAAATAAAT 59.164 33.333 0.00 0.00 31.18 1.40
2820 3786 4.067896 TCTGTCAGCTGAAAGACCATTTC 58.932 43.478 29.32 9.35 33.65 2.17
2842 3808 4.409901 TCCTGCCTGAATTCACATGATCTA 59.590 41.667 3.38 0.00 0.00 1.98
2859 3825 4.530553 TGATCTAAGTTAGTTGCCAGGTCA 59.469 41.667 9.71 0.00 0.00 4.02
2861 3827 4.894784 TCTAAGTTAGTTGCCAGGTCAAG 58.105 43.478 9.71 0.00 0.00 3.02
2877 3843 3.431486 GGTCAAGCTTCAGACAGGATAGG 60.431 52.174 16.28 0.00 36.50 2.57
2898 3864 2.881403 GCACTTGGACAGGAACATGGAT 60.881 50.000 0.00 0.00 0.00 3.41
2901 3867 0.625316 TGGACAGGAACATGGATGGG 59.375 55.000 0.00 0.00 0.00 4.00
2922 3888 4.505313 GGACAACCCTGATTTTCAGTTC 57.495 45.455 4.00 0.00 42.80 3.01
2926 3892 4.584743 ACAACCCTGATTTTCAGTTCCTTC 59.415 41.667 4.00 0.00 42.80 3.46
2940 3906 9.581099 TTTCAGTTCCTTCAACTTTATTTGTTC 57.419 29.630 0.00 0.00 43.38 3.18
2943 3909 9.237846 CAGTTCCTTCAACTTTATTTGTTCTTC 57.762 33.333 0.00 0.00 43.38 2.87
2994 3960 8.800370 AATTCCTTTTTCTCCAAGATAGAGAC 57.200 34.615 0.00 0.00 40.05 3.36
2997 3963 6.270000 TCCTTTTTCTCCAAGATAGAGACACA 59.730 38.462 0.00 0.00 40.05 3.72
2998 3964 7.038017 TCCTTTTTCTCCAAGATAGAGACACAT 60.038 37.037 0.00 0.00 40.05 3.21
2999 3965 8.260818 CCTTTTTCTCCAAGATAGAGACACATA 58.739 37.037 0.00 0.00 40.05 2.29
3000 3966 9.658799 CTTTTTCTCCAAGATAGAGACACATAA 57.341 33.333 0.00 0.00 40.05 1.90
3004 3970 9.605275 TTCTCCAAGATAGAGACACATAAATTG 57.395 33.333 0.00 0.00 40.05 2.32
3007 3973 6.543465 CCAAGATAGAGACACATAAATTGCCA 59.457 38.462 0.00 0.00 0.00 4.92
3008 3974 7.230108 CCAAGATAGAGACACATAAATTGCCAT 59.770 37.037 0.00 0.00 0.00 4.40
3009 3975 9.276590 CAAGATAGAGACACATAAATTGCCATA 57.723 33.333 0.00 0.00 0.00 2.74
3011 3977 9.499479 AGATAGAGACACATAAATTGCCATAAG 57.501 33.333 0.00 0.00 0.00 1.73
3012 3978 9.494271 GATAGAGACACATAAATTGCCATAAGA 57.506 33.333 0.00 0.00 0.00 2.10
3013 3979 7.798596 AGAGACACATAAATTGCCATAAGAG 57.201 36.000 0.00 0.00 0.00 2.85
3014 3980 7.568349 AGAGACACATAAATTGCCATAAGAGA 58.432 34.615 0.00 0.00 0.00 3.10
3016 3982 8.218338 AGACACATAAATTGCCATAAGAGAAG 57.782 34.615 0.00 0.00 0.00 2.85
3017 3983 7.831193 AGACACATAAATTGCCATAAGAGAAGT 59.169 33.333 0.00 0.00 0.00 3.01
3018 3984 7.989826 ACACATAAATTGCCATAAGAGAAGTC 58.010 34.615 0.00 0.00 0.00 3.01
3020 3986 7.067372 CACATAAATTGCCATAAGAGAAGTCCA 59.933 37.037 0.00 0.00 0.00 4.02
3021 3987 7.284034 ACATAAATTGCCATAAGAGAAGTCCAG 59.716 37.037 0.00 0.00 0.00 3.86
3023 3989 4.478206 TTGCCATAAGAGAAGTCCAGAG 57.522 45.455 0.00 0.00 0.00 3.35
3026 3992 3.181470 GCCATAAGAGAAGTCCAGAGACC 60.181 52.174 0.00 0.00 44.72 3.85
3027 3993 3.067461 CCATAAGAGAAGTCCAGAGACCG 59.933 52.174 0.00 0.00 44.72 4.79
3028 3994 1.551452 AAGAGAAGTCCAGAGACCGG 58.449 55.000 0.00 0.00 44.72 5.28
3029 3995 0.968393 AGAGAAGTCCAGAGACCGGC 60.968 60.000 0.00 0.00 44.72 6.13
3030 3996 1.228894 AGAAGTCCAGAGACCGGCA 60.229 57.895 0.00 0.00 44.72 5.69
3031 3997 0.832135 AGAAGTCCAGAGACCGGCAA 60.832 55.000 0.00 0.00 44.72 4.52
3032 3998 0.670854 GAAGTCCAGAGACCGGCAAC 60.671 60.000 0.00 0.00 44.72 4.17
3033 3999 1.122019 AAGTCCAGAGACCGGCAACT 61.122 55.000 0.00 0.00 44.72 3.16
3034 4000 1.122019 AGTCCAGAGACCGGCAACTT 61.122 55.000 0.00 0.00 44.72 2.66
3035 4001 0.250338 GTCCAGAGACCGGCAACTTT 60.250 55.000 0.00 0.00 37.00 2.66
3036 4002 0.472471 TCCAGAGACCGGCAACTTTT 59.528 50.000 0.00 0.00 0.00 2.27
3037 4003 0.593128 CCAGAGACCGGCAACTTTTG 59.407 55.000 0.00 2.30 0.00 2.44
3038 4004 1.308998 CAGAGACCGGCAACTTTTGT 58.691 50.000 0.00 0.00 0.00 2.83
3039 4005 1.676006 CAGAGACCGGCAACTTTTGTT 59.324 47.619 0.00 0.00 44.66 2.83
3040 4006 2.099098 CAGAGACCGGCAACTTTTGTTT 59.901 45.455 0.00 0.00 41.35 2.83
3041 4007 2.099098 AGAGACCGGCAACTTTTGTTTG 59.901 45.455 0.00 0.00 41.35 2.93
3042 4008 0.927537 GACCGGCAACTTTTGTTTGC 59.072 50.000 0.00 0.00 41.35 3.68
3043 4009 0.247736 ACCGGCAACTTTTGTTTGCA 59.752 45.000 0.00 0.00 41.35 4.08
3044 4010 0.649993 CCGGCAACTTTTGTTTGCAC 59.350 50.000 9.13 0.00 41.35 4.57
3045 4011 1.639280 CGGCAACTTTTGTTTGCACT 58.361 45.000 9.13 0.00 41.35 4.40
3052 4018 5.373262 CAACTTTTGTTTGCACTGTTCAAC 58.627 37.500 0.00 0.00 41.35 3.18
3059 4025 4.098416 GTTTGCACTGTTCAACTTCAGAC 58.902 43.478 0.00 0.00 35.84 3.51
3065 4031 4.818546 CACTGTTCAACTTCAGACAGGATT 59.181 41.667 7.20 0.00 35.84 3.01
3071 4037 5.300752 TCAACTTCAGACAGGATTCTCAAC 58.699 41.667 0.00 0.00 0.00 3.18
3084 4050 3.573772 CTCAACGGAGACTGCGCCA 62.574 63.158 16.93 0.00 44.26 5.69
3091 4057 1.729149 CGGAGACTGCGCCAATTTTTC 60.729 52.381 4.18 0.00 32.92 2.29
3093 4059 2.029918 GGAGACTGCGCCAATTTTTCTT 60.030 45.455 4.18 0.00 33.67 2.52
3094 4060 3.552890 GGAGACTGCGCCAATTTTTCTTT 60.553 43.478 4.18 0.00 33.67 2.52
3095 4061 3.642705 AGACTGCGCCAATTTTTCTTTC 58.357 40.909 4.18 0.00 0.00 2.62
3096 4062 2.731451 GACTGCGCCAATTTTTCTTTCC 59.269 45.455 4.18 0.00 0.00 3.13
3129 4095 2.239439 TTTAATCCCACCCCCGCCA 61.239 57.895 0.00 0.00 0.00 5.69
3277 4243 1.382629 CAGGGATTCCACCGGGTTT 59.617 57.895 6.32 0.00 34.83 3.27
3280 4246 1.254975 GGGATTCCACCGGGTTTTGG 61.255 60.000 6.32 4.03 34.93 3.28
3304 4270 2.602267 TCTCCCTCCGCGTGGAAA 60.602 61.111 20.06 6.69 45.87 3.13
3328 4294 0.103937 CCACGCCTCATCTCTTCTCC 59.896 60.000 0.00 0.00 0.00 3.71
3466 4432 3.070576 GGTGGATTGTGGGCTGGC 61.071 66.667 0.00 0.00 0.00 4.85
3533 4501 0.898789 GGAACAGAGACTGGGGACGA 60.899 60.000 0.00 0.00 35.51 4.20
3544 4512 0.393448 TGGGGACGAAATCACGAACA 59.607 50.000 0.00 0.00 37.03 3.18
3545 4513 1.202663 TGGGGACGAAATCACGAACAA 60.203 47.619 0.00 0.00 37.03 2.83
3598 8776 1.636769 CCTTTCTCCTACCCCTGGCC 61.637 65.000 0.00 0.00 0.00 5.36
3609 8787 2.041928 CCTGGCCCTCTCTCCCTT 59.958 66.667 0.00 0.00 0.00 3.95
3629 8807 2.470990 TGATTCTCCTTCCTGCTGCTA 58.529 47.619 0.00 0.00 0.00 3.49
3647 8826 4.917385 TGCTACTTGTACCATGGTGAATT 58.083 39.130 28.17 15.41 0.00 2.17
3652 8831 4.943705 ACTTGTACCATGGTGAATTAGCTG 59.056 41.667 28.17 9.11 0.00 4.24
3695 8874 6.390721 TGTACTCTTGAGTGATTAGTGAAGC 58.609 40.000 12.99 0.00 0.00 3.86
3710 8889 3.125316 GTGAAGCTGGTACGTAACACAA 58.875 45.455 9.81 0.00 0.00 3.33
3711 8890 3.744426 GTGAAGCTGGTACGTAACACAAT 59.256 43.478 9.81 0.00 0.00 2.71
3712 8891 3.991773 TGAAGCTGGTACGTAACACAATC 59.008 43.478 9.81 8.36 0.00 2.67
3743 9313 1.000506 GACCGACTGTTGCCTTCTACA 59.999 52.381 0.00 0.00 0.00 2.74
3891 9799 1.472878 GTCCGCTCCTCCCAAAAATTC 59.527 52.381 0.00 0.00 0.00 2.17
3896 9804 3.119708 CGCTCCTCCCAAAAATTCTCTTG 60.120 47.826 0.00 0.00 0.00 3.02
3933 9841 1.326951 GCCCTCTCCTCACCACTCTC 61.327 65.000 0.00 0.00 0.00 3.20
3962 11411 0.615827 TCTGCTAGGCTTCCAGCTCA 60.616 55.000 9.04 0.00 41.99 4.26
4112 11561 2.568956 TGGATCCACAAGAGAAGTCCAG 59.431 50.000 11.44 0.00 31.21 3.86
4114 11563 3.118811 GGATCCACAAGAGAAGTCCAGAG 60.119 52.174 6.95 0.00 0.00 3.35
4115 11564 3.244887 TCCACAAGAGAAGTCCAGAGA 57.755 47.619 0.00 0.00 0.00 3.10
4116 11565 2.894126 TCCACAAGAGAAGTCCAGAGAC 59.106 50.000 0.00 0.00 43.89 3.36
4117 11566 2.028567 CCACAAGAGAAGTCCAGAGACC 60.029 54.545 0.00 0.00 44.72 3.85
4118 11567 1.889829 ACAAGAGAAGTCCAGAGACCG 59.110 52.381 0.00 0.00 44.72 4.79
4119 11568 1.203523 CAAGAGAAGTCCAGAGACCGG 59.796 57.143 0.00 0.00 44.72 5.28
4120 11569 0.968393 AGAGAAGTCCAGAGACCGGC 60.968 60.000 0.00 0.00 44.72 6.13
4121 11570 0.968393 GAGAAGTCCAGAGACCGGCT 60.968 60.000 0.00 0.00 44.72 5.52
4123 11572 1.183549 GAAGTCCAGAGACCGGCTTA 58.816 55.000 0.00 0.00 44.72 3.09
4137 11586 2.253603 CGGCTTATTTGTTTGCTCTGC 58.746 47.619 0.00 0.00 0.00 4.26
4139 11588 3.248266 GGCTTATTTGTTTGCTCTGCTG 58.752 45.455 0.00 0.00 0.00 4.41
4140 11589 2.665052 GCTTATTTGTTTGCTCTGCTGC 59.335 45.455 0.00 0.00 0.00 5.25
4141 11590 3.613432 GCTTATTTGTTTGCTCTGCTGCT 60.613 43.478 0.00 0.00 0.00 4.24
4142 11591 2.433868 ATTTGTTTGCTCTGCTGCTG 57.566 45.000 0.00 0.00 0.00 4.41
4143 11592 1.105457 TTTGTTTGCTCTGCTGCTGT 58.895 45.000 0.00 0.00 0.00 4.40
4144 11593 0.382873 TTGTTTGCTCTGCTGCTGTG 59.617 50.000 0.00 2.51 0.00 3.66
4146 11595 2.558286 TTTGCTCTGCTGCTGTGCC 61.558 57.895 24.08 11.51 0.00 5.01
4147 11596 2.971095 TTTGCTCTGCTGCTGTGCCT 62.971 55.000 24.08 0.00 0.00 4.75
4148 11597 3.432588 GCTCTGCTGCTGTGCCTG 61.433 66.667 18.82 3.25 0.00 4.85
4152 11601 0.614812 TCTGCTGCTGTGCCTGAATA 59.385 50.000 0.00 0.00 0.00 1.75
4170 11719 6.314896 CCTGAATACCACATTTCTGTTCTCTC 59.685 42.308 0.00 0.00 31.62 3.20
4174 11723 4.978099 ACCACATTTCTGTTCTCTCACAT 58.022 39.130 0.00 0.00 31.62 3.21
4187 11736 3.195610 TCTCTCACATGTATCGCAAACCT 59.804 43.478 0.00 0.00 0.00 3.50
4188 11737 3.261580 TCTCACATGTATCGCAAACCTG 58.738 45.455 0.00 0.00 0.00 4.00
4189 11738 3.056179 TCTCACATGTATCGCAAACCTGA 60.056 43.478 0.00 0.00 0.00 3.86
4190 11739 3.872696 TCACATGTATCGCAAACCTGAT 58.127 40.909 0.00 0.00 0.00 2.90
4203 11756 2.876581 CCTGATTGATGTGCAGGCA 58.123 52.632 0.00 0.00 42.30 4.75
4227 11780 3.352447 CGAGTTCGCTCATGGTCAT 57.648 52.632 0.00 0.00 44.28 3.06
4287 11840 1.550976 GTCCTGTCCGACATTCTCCTT 59.449 52.381 0.62 0.00 32.74 3.36
4388 11941 2.182842 CAAGGTATGAGCCGGCAGC 61.183 63.158 31.54 20.85 44.25 5.25
4441 11994 3.801997 CCCCTCTCCGGCAATGCT 61.802 66.667 4.82 0.00 0.00 3.79
4509 12062 1.745489 CGCTGACCCTTGGGTAAGC 60.745 63.158 29.94 29.94 41.63 3.09
4529 12082 2.411547 GCGAACGAATGAACACTCCTTG 60.412 50.000 0.00 0.00 0.00 3.61
4530 12083 2.411547 CGAACGAATGAACACTCCTTGC 60.412 50.000 0.00 0.00 0.00 4.01
4531 12084 1.523758 ACGAATGAACACTCCTTGCC 58.476 50.000 0.00 0.00 0.00 4.52
4572 12126 5.244785 TGTCGGATGTCTGAACATAGTAC 57.755 43.478 0.00 0.00 46.20 2.73
4583 12137 7.274904 TGTCTGAACATAGTACGTAAGATTTGC 59.725 37.037 0.00 0.00 43.62 3.68
4584 12138 7.488471 GTCTGAACATAGTACGTAAGATTTGCT 59.512 37.037 0.00 0.00 43.62 3.91
4585 12139 8.033038 TCTGAACATAGTACGTAAGATTTGCTT 58.967 33.333 0.00 0.00 43.62 3.91
4586 12140 8.181487 TGAACATAGTACGTAAGATTTGCTTC 57.819 34.615 0.00 1.40 43.62 3.86
4639 12193 2.044555 GCATTGCAGCAGCTCTCCA 61.045 57.895 3.15 0.00 42.74 3.86
4772 12326 0.388263 GAGAACACCTTCGACGGGAC 60.388 60.000 13.17 0.91 0.00 4.46
4827 12381 2.881074 CTGGACAAGGTACACGATCAG 58.119 52.381 0.00 0.00 0.00 2.90
4829 12383 2.230508 TGGACAAGGTACACGATCAGAC 59.769 50.000 0.00 0.00 0.00 3.51
4830 12384 2.492484 GGACAAGGTACACGATCAGACT 59.508 50.000 0.00 0.00 0.00 3.24
4831 12385 3.693085 GGACAAGGTACACGATCAGACTA 59.307 47.826 0.00 0.00 0.00 2.59
4832 12386 4.157289 GGACAAGGTACACGATCAGACTAA 59.843 45.833 0.00 0.00 0.00 2.24
4833 12387 5.056894 ACAAGGTACACGATCAGACTAAC 57.943 43.478 0.00 0.00 0.00 2.34
4834 12388 4.765856 ACAAGGTACACGATCAGACTAACT 59.234 41.667 0.00 0.00 0.00 2.24
4835 12389 5.243283 ACAAGGTACACGATCAGACTAACTT 59.757 40.000 0.00 0.00 0.00 2.66
4836 12390 5.312120 AGGTACACGATCAGACTAACTTG 57.688 43.478 0.00 0.00 0.00 3.16
4837 12391 4.158025 AGGTACACGATCAGACTAACTTGG 59.842 45.833 0.00 0.00 0.00 3.61
4838 12392 2.960819 ACACGATCAGACTAACTTGGC 58.039 47.619 0.00 0.00 0.00 4.52
4839 12393 2.299013 ACACGATCAGACTAACTTGGCA 59.701 45.455 0.00 0.00 0.00 4.92
4840 12394 3.055819 ACACGATCAGACTAACTTGGCAT 60.056 43.478 0.00 0.00 0.00 4.40
4841 12395 3.935203 CACGATCAGACTAACTTGGCATT 59.065 43.478 0.00 0.00 0.00 3.56
4842 12396 4.393062 CACGATCAGACTAACTTGGCATTT 59.607 41.667 0.00 0.00 0.00 2.32
4843 12397 5.003804 ACGATCAGACTAACTTGGCATTTT 58.996 37.500 0.00 0.00 0.00 1.82
4844 12398 5.473504 ACGATCAGACTAACTTGGCATTTTT 59.526 36.000 0.00 0.00 0.00 1.94
4845 12399 6.024049 CGATCAGACTAACTTGGCATTTTTC 58.976 40.000 0.00 0.00 0.00 2.29
4846 12400 6.128172 CGATCAGACTAACTTGGCATTTTTCT 60.128 38.462 0.00 0.00 0.00 2.52
4847 12401 6.959639 TCAGACTAACTTGGCATTTTTCTT 57.040 33.333 0.00 0.00 0.00 2.52
4858 12412 5.319453 TGGCATTTTTCTTCAGAGAGTGAT 58.681 37.500 0.00 0.00 34.17 3.06
4861 12415 6.095160 GGCATTTTTCTTCAGAGAGTGATCAT 59.905 38.462 0.00 0.00 34.17 2.45
4865 12419 6.602410 TTTCTTCAGAGAGTGATCATGAGT 57.398 37.500 0.00 0.00 34.17 3.41
4866 12420 7.709149 TTTCTTCAGAGAGTGATCATGAGTA 57.291 36.000 0.00 0.00 34.17 2.59
4867 12421 7.894753 TTCTTCAGAGAGTGATCATGAGTAT 57.105 36.000 0.00 0.00 34.17 2.12
4869 12442 8.986929 TCTTCAGAGAGTGATCATGAGTATTA 57.013 34.615 0.00 0.00 34.17 0.98
4886 12459 8.262601 TGAGTATTAATGGTCTATGATGGTGT 57.737 34.615 0.00 0.00 0.00 4.16
4887 12460 9.374711 TGAGTATTAATGGTCTATGATGGTGTA 57.625 33.333 0.00 0.00 0.00 2.90
4890 12463 9.944376 GTATTAATGGTCTATGATGGTGTATGT 57.056 33.333 0.00 0.00 0.00 2.29
4891 12464 8.853077 ATTAATGGTCTATGATGGTGTATGTG 57.147 34.615 0.00 0.00 0.00 3.21
4892 12465 4.071961 TGGTCTATGATGGTGTATGTGC 57.928 45.455 0.00 0.00 0.00 4.57
5012 12585 0.967380 ATGCAGCAAGCTTACCACCC 60.967 55.000 0.00 0.00 45.94 4.61
5063 12636 0.102120 TTTTGTTTCAGCCGGCACAG 59.898 50.000 31.54 18.31 0.00 3.66
5064 12637 1.034838 TTTGTTTCAGCCGGCACAGT 61.035 50.000 31.54 4.11 0.00 3.55
5066 12639 2.664851 TTTCAGCCGGCACAGTCG 60.665 61.111 31.54 9.44 0.00 4.18
5215 12798 1.739562 GAAGCTGCTGACGGAGGTG 60.740 63.158 1.35 0.00 39.36 4.00
5597 13204 1.889454 GCGAATGCATTGGTTGGGA 59.111 52.632 18.59 0.00 42.15 4.37
5636 13255 6.183360 CGAAAGCATTATCTGTGTTCTGATGT 60.183 38.462 0.00 0.00 34.79 3.06
5719 15239 9.846248 GTAATCTTTGTGTAGAAAATGATGCTT 57.154 29.630 0.00 0.00 0.00 3.91
5804 15324 5.106948 ACTGCAAGACATGTCAATAGTTTCG 60.107 40.000 27.02 8.78 37.43 3.46
5929 15450 2.029288 CAGCGTCAGTGCACGGAAT 61.029 57.895 21.46 7.93 40.29 3.01
5933 15454 0.999406 CGTCAGTGCACGGAATAAGG 59.001 55.000 21.46 5.24 36.07 2.69
5944 15471 4.142881 GCACGGAATAAGGAAAAGTCTCAC 60.143 45.833 0.00 0.00 0.00 3.51
5947 15474 4.576879 GGAATAAGGAAAAGTCTCACCGT 58.423 43.478 0.00 0.00 0.00 4.83
5971 15498 8.848182 CGTTTCCTAAGGTTATACTGATCTAGT 58.152 37.037 0.00 0.00 43.56 2.57
6155 15772 2.223805 CCTTTGTGGCTGAGTTGGTTTC 60.224 50.000 0.00 0.00 0.00 2.78
6183 15905 1.792301 GTCGTCCTCGTCGTCATCA 59.208 57.895 0.00 0.00 38.33 3.07
6188 15910 1.068472 GTCCTCGTCGTCATCAGTGTT 60.068 52.381 0.00 0.00 0.00 3.32
6321 16043 0.536460 AAGGCGTTTTGACCGGTGAT 60.536 50.000 14.63 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.564975 CGCAGCTGCAAAAGGAGG 59.435 61.111 36.03 15.08 42.21 4.30
126 142 1.661463 TGGATGTGGCTCCTTCTTCT 58.339 50.000 0.00 0.00 36.20 2.85
127 143 2.489722 GTTTGGATGTGGCTCCTTCTTC 59.510 50.000 0.00 0.00 36.20 2.87
128 144 2.158475 TGTTTGGATGTGGCTCCTTCTT 60.158 45.455 0.00 0.00 36.20 2.52
160 177 6.083487 AGATTGAAAGAAAGGATGGATGGA 57.917 37.500 0.00 0.00 0.00 3.41
227 246 4.419522 AGCATTTACATGTGAAACGGTC 57.580 40.909 9.11 0.00 42.39 4.79
231 250 5.648092 AGGGAGTAGCATTTACATGTGAAAC 59.352 40.000 9.11 3.67 32.28 2.78
241 260 3.101437 TGAACGGAGGGAGTAGCATTTA 58.899 45.455 0.00 0.00 0.00 1.40
246 265 3.814005 TTTATGAACGGAGGGAGTAGC 57.186 47.619 0.00 0.00 0.00 3.58
252 271 4.137116 TCACTCATTTATGAACGGAGGG 57.863 45.455 5.93 2.37 36.18 4.30
329 396 8.230486 GCACTTCCTTCGTTCATAAATATATGG 58.770 37.037 0.00 0.00 39.54 2.74
330 397 8.993121 AGCACTTCCTTCGTTCATAAATATATG 58.007 33.333 0.00 0.00 40.29 1.78
331 398 9.209175 GAGCACTTCCTTCGTTCATAAATATAT 57.791 33.333 0.00 0.00 0.00 0.86
343 410 3.456317 ACGGAGCACTTCCTTCGT 58.544 55.556 0.00 0.00 44.41 3.85
346 413 3.914426 AATATCACGGAGCACTTCCTT 57.086 42.857 0.00 0.00 44.41 3.36
354 421 2.297597 AGCAGAGGTAATATCACGGAGC 59.702 50.000 0.00 0.00 0.00 4.70
483 913 6.648725 ATGTTACTTCAGTGATCTAAACGC 57.351 37.500 0.00 0.00 0.00 4.84
484 914 9.355215 ACTAATGTTACTTCAGTGATCTAAACG 57.645 33.333 0.00 0.00 0.00 3.60
493 923 9.307121 CCTTAGATCACTAATGTTACTTCAGTG 57.693 37.037 0.00 0.00 37.85 3.66
494 924 8.478877 CCCTTAGATCACTAATGTTACTTCAGT 58.521 37.037 0.00 0.00 37.85 3.41
495 925 7.439655 GCCCTTAGATCACTAATGTTACTTCAG 59.560 40.741 0.00 0.00 37.85 3.02
497 927 7.501844 AGCCCTTAGATCACTAATGTTACTTC 58.498 38.462 0.00 0.00 37.85 3.01
498 928 7.439108 AGCCCTTAGATCACTAATGTTACTT 57.561 36.000 0.00 0.00 37.85 2.24
500 930 8.507524 AAAAGCCCTTAGATCACTAATGTTAC 57.492 34.615 0.00 0.00 37.85 2.50
516 946 8.190784 CGTTCATGAAGAAATATAAAAGCCCTT 58.809 33.333 8.80 0.00 38.13 3.95
517 947 7.201821 CCGTTCATGAAGAAATATAAAAGCCCT 60.202 37.037 8.80 0.00 38.13 5.19
518 948 6.918022 CCGTTCATGAAGAAATATAAAAGCCC 59.082 38.462 8.80 0.00 38.13 5.19
519 949 7.703328 TCCGTTCATGAAGAAATATAAAAGCC 58.297 34.615 8.80 0.00 38.13 4.35
539 969 9.932207 TCCGTATGATTAATATTGTTATCCGTT 57.068 29.630 0.00 0.00 0.00 4.44
540 970 9.582431 CTCCGTATGATTAATATTGTTATCCGT 57.418 33.333 0.00 0.00 0.00 4.69
541 971 9.797556 TCTCCGTATGATTAATATTGTTATCCG 57.202 33.333 0.00 0.00 0.00 4.18
569 999 1.006220 TGTCACGCACGCATTCTCT 60.006 52.632 0.00 0.00 0.00 3.10
608 1038 2.550208 GGTTGGAATTCGCCGAGGATAT 60.550 50.000 0.00 0.00 0.00 1.63
610 1040 0.463833 GGTTGGAATTCGCCGAGGAT 60.464 55.000 0.00 0.00 0.00 3.24
611 1041 1.078708 GGTTGGAATTCGCCGAGGA 60.079 57.895 0.00 0.00 0.00 3.71
614 1044 1.376683 CAGGGTTGGAATTCGCCGA 60.377 57.895 0.00 0.00 0.00 5.54
691 1126 3.509446 GAACGTAATCTCGCGCGCG 62.509 63.158 44.84 44.84 41.35 6.86
726 1162 2.731571 TTCTCTCCCGGGCGGATTG 61.732 63.158 18.49 5.94 41.00 2.67
733 1169 1.296715 CCACTTGTTCTCTCCCGGG 59.703 63.158 16.85 16.85 0.00 5.73
903 1342 3.541713 GCGGGATCGGGAAGCTCT 61.542 66.667 0.00 0.00 36.79 4.09
904 1343 3.541713 AGCGGGATCGGGAAGCTC 61.542 66.667 0.00 0.00 36.79 4.09
905 1344 3.854669 CAGCGGGATCGGGAAGCT 61.855 66.667 0.00 0.00 38.90 3.74
950 1389 0.593128 CACCGAGGAAAAGTTGCAGG 59.407 55.000 0.00 0.00 0.00 4.85
1080 1519 2.920384 GCCCGATCCTCCTCCTCC 60.920 72.222 0.00 0.00 0.00 4.30
1081 1520 2.920384 GGCCCGATCCTCCTCCTC 60.920 72.222 0.00 0.00 0.00 3.71
1082 1521 3.332393 TTGGCCCGATCCTCCTCCT 62.332 63.158 0.00 0.00 0.00 3.69
1094 1533 4.994756 CCACCACCACCTTGGCCC 62.995 72.222 0.00 0.00 42.67 5.80
1326 1765 1.675310 GCAGCCATAGCACACCACA 60.675 57.895 0.00 0.00 43.56 4.17
1330 1769 2.042259 TGCAGCAGCCATAGCACAC 61.042 57.895 0.00 0.00 43.56 3.82
1333 1772 2.438975 GGTGCAGCAGCCATAGCA 60.439 61.111 14.00 0.00 43.56 3.49
1343 1782 1.884926 GCTATCTGTCCGGTGCAGC 60.885 63.158 19.12 5.64 34.21 5.25
1351 1790 2.962421 AGCCAAGACTAGCTATCTGTCC 59.038 50.000 7.74 0.00 37.64 4.02
1353 1792 2.697751 CCAGCCAAGACTAGCTATCTGT 59.302 50.000 0.00 0.00 37.18 3.41
1376 1815 1.135046 CAAGCTACGAGATCATGGCG 58.865 55.000 0.00 0.00 0.00 5.69
1388 1827 0.475906 ATCATGGCCCCTCAAGCTAC 59.524 55.000 0.00 0.00 0.00 3.58
1410 1849 0.721718 AAACTCGTATGCTTGCTCGC 59.278 50.000 0.00 0.00 0.00 5.03
1411 1850 2.028523 CAGAAACTCGTATGCTTGCTCG 59.971 50.000 0.00 0.00 0.00 5.03
1447 1886 1.076533 AGCGGCGAATTCAGTACACG 61.077 55.000 12.98 1.70 0.00 4.49
1449 1888 1.075542 CAAGCGGCGAATTCAGTACA 58.924 50.000 12.98 0.00 0.00 2.90
1450 1889 0.373716 CCAAGCGGCGAATTCAGTAC 59.626 55.000 12.98 0.00 0.00 2.73
1451 1890 2.762360 CCAAGCGGCGAATTCAGTA 58.238 52.632 12.98 0.00 0.00 2.74
1452 1891 3.578456 CCAAGCGGCGAATTCAGT 58.422 55.556 12.98 0.00 0.00 3.41
1462 1901 1.135402 GGAGTTTTATGTGCCAAGCGG 60.135 52.381 0.00 0.00 0.00 5.52
1475 1914 3.769300 AGAAACCTTTGCTGTGGAGTTTT 59.231 39.130 0.00 0.00 0.00 2.43
1578 2017 2.093447 AGGACAGAAATAGCGGTTGGAG 60.093 50.000 0.00 0.00 0.00 3.86
1581 2020 4.023193 ACAAAAGGACAGAAATAGCGGTTG 60.023 41.667 0.00 0.00 0.00 3.77
1599 2038 7.551585 TGCATTTTCCTTTCAGTTAGACAAAA 58.448 30.769 0.00 0.00 0.00 2.44
1655 2094 3.554259 TCGTAGTACACTCACTGCAAG 57.446 47.619 0.38 0.00 42.29 4.01
1663 2102 5.458891 AGTTCAACACATCGTAGTACACTC 58.541 41.667 0.38 0.00 0.00 3.51
1697 2136 6.255453 TGCTTCTGCAGTTATTTTTGAACAAC 59.745 34.615 14.67 0.00 45.31 3.32
1698 2137 6.336566 TGCTTCTGCAGTTATTTTTGAACAA 58.663 32.000 14.67 0.00 45.31 2.83
1754 2193 3.553917 CCCGCTGTTTTAACCAGTTTTTG 59.446 43.478 3.89 0.00 0.00 2.44
1783 2222 5.473162 TGTGTTTCACATTGAGGTGGATTAG 59.527 40.000 0.00 0.00 39.62 1.73
1784 2223 5.380900 TGTGTTTCACATTGAGGTGGATTA 58.619 37.500 0.00 0.00 39.62 1.75
1800 2239 2.031683 CCACGAACTGAGGTTGTGTTTC 59.968 50.000 16.24 0.00 35.58 2.78
1986 2632 7.553334 ACGCTCTTATATTTGTTTACAGAGGA 58.447 34.615 0.00 0.00 0.00 3.71
1996 2642 5.990668 AGGGAAGAACGCTCTTATATTTGT 58.009 37.500 0.05 0.00 42.19 2.83
1997 2643 6.984474 TGTAGGGAAGAACGCTCTTATATTTG 59.016 38.462 0.05 0.00 42.19 2.32
1998 2644 7.120923 TGTAGGGAAGAACGCTCTTATATTT 57.879 36.000 0.05 0.00 42.19 1.40
1999 2645 6.726490 TGTAGGGAAGAACGCTCTTATATT 57.274 37.500 0.05 0.00 42.19 1.28
2000 2646 6.726490 TTGTAGGGAAGAACGCTCTTATAT 57.274 37.500 0.05 0.00 42.19 0.86
2002 2648 5.416271 TTTGTAGGGAAGAACGCTCTTAT 57.584 39.130 0.05 0.00 42.19 1.73
2003 2649 4.877378 TTTGTAGGGAAGAACGCTCTTA 57.123 40.909 0.05 0.00 42.19 2.10
2004 2650 3.764237 TTTGTAGGGAAGAACGCTCTT 57.236 42.857 0.00 0.00 44.93 2.85
2006 2652 6.487103 CAATTATTTGTAGGGAAGAACGCTC 58.513 40.000 0.00 0.00 41.89 5.03
2007 2653 5.163652 GCAATTATTTGTAGGGAAGAACGCT 60.164 40.000 0.00 0.00 38.08 5.07
2008 2654 5.034797 GCAATTATTTGTAGGGAAGAACGC 58.965 41.667 0.00 0.00 35.17 4.84
2009 2655 5.163794 ACGCAATTATTTGTAGGGAAGAACG 60.164 40.000 0.00 0.00 35.17 3.95
2010 2656 6.190954 ACGCAATTATTTGTAGGGAAGAAC 57.809 37.500 0.00 0.00 35.17 3.01
2032 2996 8.534333 TCGTATATATCCTTGCAAGAATGAAC 57.466 34.615 28.05 16.26 0.00 3.18
2052 3016 3.711086 GTGCATGTGATGTCTCTCGTAT 58.289 45.455 0.00 0.00 0.00 3.06
2055 3019 0.919300 CGTGCATGTGATGTCTCTCG 59.081 55.000 0.00 0.00 0.00 4.04
2060 3024 2.341257 AGAACTCGTGCATGTGATGTC 58.659 47.619 14.62 8.48 0.00 3.06
2162 3126 3.384789 TCCTCTTGTTCGATATCCTGTGG 59.615 47.826 0.00 0.00 0.00 4.17
2291 3256 6.692681 CCGCATTGAATTCATAAAATCTTCGT 59.307 34.615 9.40 0.00 0.00 3.85
2292 3257 6.142798 CCCGCATTGAATTCATAAAATCTTCG 59.857 38.462 9.40 3.52 0.00 3.79
2302 3267 3.319972 CCTGAATCCCGCATTGAATTCAT 59.680 43.478 9.40 0.00 0.00 2.57
2332 3297 1.687494 GCATCTCGACACGGACTTGC 61.687 60.000 0.00 0.00 0.00 4.01
2392 3357 7.308830 GCTCTGATTGTGATGTTTTAGGTTCTT 60.309 37.037 0.00 0.00 0.00 2.52
2419 3384 6.940298 ACGAGGATGAGGAAAAACTGATAAAA 59.060 34.615 0.00 0.00 0.00 1.52
2453 3418 9.383519 GAGATTGACAGGATTTGTAGTAAATGA 57.616 33.333 0.00 0.00 41.05 2.57
2465 3430 4.826274 TTCGGAAGAGATTGACAGGATT 57.174 40.909 0.00 0.00 43.69 3.01
2497 3462 2.226912 ACGCTAAGTCAGATAGATCGGC 59.773 50.000 0.00 0.00 0.00 5.54
2517 3482 9.341899 ACATTAGATAGATTTTGTTTTTGCGAC 57.658 29.630 0.00 0.00 0.00 5.19
2518 3483 9.906660 AACATTAGATAGATTTTGTTTTTGCGA 57.093 25.926 0.00 0.00 0.00 5.10
2526 3491 8.437360 TCATGCGAACATTAGATAGATTTTGT 57.563 30.769 0.00 0.00 32.87 2.83
2527 3492 9.888878 ATTCATGCGAACATTAGATAGATTTTG 57.111 29.630 0.00 0.00 32.87 2.44
2537 3502 5.334435 ACGATCATTCATGCGAACATTAG 57.666 39.130 0.00 0.00 32.87 1.73
2544 3509 3.976169 TGTGATACGATCATTCATGCGA 58.024 40.909 0.00 0.00 42.04 5.10
2564 3529 1.011242 CGCTGTTCACCACACGTTG 60.011 57.895 0.00 0.00 0.00 4.10
2566 3531 0.315886 TATCGCTGTTCACCACACGT 59.684 50.000 0.00 0.00 33.91 4.49
2568 3533 3.000041 TCAATATCGCTGTTCACCACAC 59.000 45.455 0.00 0.00 0.00 3.82
2599 3564 1.276622 TTCCACTAACTCAGGGCCTC 58.723 55.000 0.95 0.00 0.00 4.70
2652 3617 1.770658 TCCCTCAATGCCGATTCAGAT 59.229 47.619 0.00 0.00 0.00 2.90
2653 3618 1.203237 TCCCTCAATGCCGATTCAGA 58.797 50.000 0.00 0.00 0.00 3.27
2662 3627 0.458669 CATGTGCCTTCCCTCAATGC 59.541 55.000 0.00 0.00 0.00 3.56
2663 3628 1.843368 ACATGTGCCTTCCCTCAATG 58.157 50.000 0.00 0.00 0.00 2.82
2664 3629 2.610438 AACATGTGCCTTCCCTCAAT 57.390 45.000 0.00 0.00 0.00 2.57
2669 3634 3.320826 ACTGTTTTAACATGTGCCTTCCC 59.679 43.478 0.00 0.00 38.41 3.97
2697 3662 1.144913 CCAGTTCACCCCTCTTCCAAA 59.855 52.381 0.00 0.00 0.00 3.28
2699 3664 1.133809 CCCAGTTCACCCCTCTTCCA 61.134 60.000 0.00 0.00 0.00 3.53
2703 3668 0.252467 CTCTCCCAGTTCACCCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
2714 3679 3.636300 CTCAGAAGTGATACCTCTCCCAG 59.364 52.174 0.00 0.00 30.18 4.45
2760 3725 9.998106 GAACCTGCTGGACTAATTAATCTTATA 57.002 33.333 17.64 0.00 37.04 0.98
2761 3726 8.494433 TGAACCTGCTGGACTAATTAATCTTAT 58.506 33.333 17.64 0.00 37.04 1.73
2820 3786 3.552875 AGATCATGTGAATTCAGGCAGG 58.447 45.455 8.80 6.38 0.00 4.85
2842 3808 2.158608 AGCTTGACCTGGCAACTAACTT 60.159 45.455 0.00 0.00 37.61 2.66
2859 3825 2.093235 GTGCCTATCCTGTCTGAAGCTT 60.093 50.000 0.00 0.00 0.00 3.74
2861 3827 1.484240 AGTGCCTATCCTGTCTGAAGC 59.516 52.381 0.00 0.00 0.00 3.86
2877 3843 0.883833 CCATGTTCCTGTCCAAGTGC 59.116 55.000 0.00 0.00 0.00 4.40
2913 3879 9.936759 AACAAATAAAGTTGAAGGAACTGAAAA 57.063 25.926 0.00 0.00 44.68 2.29
2917 3883 9.237846 GAAGAACAAATAAAGTTGAAGGAACTG 57.762 33.333 0.00 0.00 44.68 3.16
2922 3888 8.171164 AGAGGAAGAACAAATAAAGTTGAAGG 57.829 34.615 0.00 0.00 32.59 3.46
2982 3948 6.543465 TGGCAATTTATGTGTCTCTATCTTGG 59.457 38.462 0.00 0.00 0.00 3.61
2983 3949 7.558161 TGGCAATTTATGTGTCTCTATCTTG 57.442 36.000 0.00 0.00 0.00 3.02
2988 3954 8.704668 TCTCTTATGGCAATTTATGTGTCTCTA 58.295 33.333 0.00 0.00 0.00 2.43
2992 3958 7.989826 ACTTCTCTTATGGCAATTTATGTGTC 58.010 34.615 0.00 0.00 0.00 3.67
2994 3960 7.067372 TGGACTTCTCTTATGGCAATTTATGTG 59.933 37.037 0.00 0.00 0.00 3.21
2997 3963 7.577303 TCTGGACTTCTCTTATGGCAATTTAT 58.423 34.615 0.00 0.00 0.00 1.40
2998 3964 6.957631 TCTGGACTTCTCTTATGGCAATTTA 58.042 36.000 0.00 0.00 0.00 1.40
2999 3965 5.819991 TCTGGACTTCTCTTATGGCAATTT 58.180 37.500 0.00 0.00 0.00 1.82
3000 3966 5.190528 TCTCTGGACTTCTCTTATGGCAATT 59.809 40.000 0.00 0.00 0.00 2.32
3002 3968 4.081420 GTCTCTGGACTTCTCTTATGGCAA 60.081 45.833 0.00 0.00 39.24 4.52
3003 3969 3.449018 GTCTCTGGACTTCTCTTATGGCA 59.551 47.826 0.00 0.00 39.24 4.92
3004 3970 3.181470 GGTCTCTGGACTTCTCTTATGGC 60.181 52.174 0.00 0.00 41.82 4.40
3007 3973 3.292460 CCGGTCTCTGGACTTCTCTTAT 58.708 50.000 0.00 0.00 41.82 1.73
3008 3974 2.724454 CCGGTCTCTGGACTTCTCTTA 58.276 52.381 0.00 0.00 41.82 2.10
3009 3975 1.551452 CCGGTCTCTGGACTTCTCTT 58.449 55.000 0.00 0.00 41.82 2.85
3011 3977 1.251527 TGCCGGTCTCTGGACTTCTC 61.252 60.000 1.90 0.00 41.82 2.87
3012 3978 0.832135 TTGCCGGTCTCTGGACTTCT 60.832 55.000 1.90 0.00 41.82 2.85
3013 3979 0.670854 GTTGCCGGTCTCTGGACTTC 60.671 60.000 1.90 0.00 41.82 3.01
3014 3980 1.122019 AGTTGCCGGTCTCTGGACTT 61.122 55.000 1.90 0.00 41.82 3.01
3016 3982 0.250338 AAAGTTGCCGGTCTCTGGAC 60.250 55.000 1.90 0.00 41.43 4.02
3017 3983 0.472471 AAAAGTTGCCGGTCTCTGGA 59.528 50.000 1.90 0.00 0.00 3.86
3018 3984 0.593128 CAAAAGTTGCCGGTCTCTGG 59.407 55.000 1.90 0.00 0.00 3.86
3020 3986 2.052782 AACAAAAGTTGCCGGTCTCT 57.947 45.000 1.90 0.00 0.00 3.10
3021 3987 2.459934 CAAACAAAAGTTGCCGGTCTC 58.540 47.619 1.90 0.00 0.00 3.36
3023 3989 0.927537 GCAAACAAAAGTTGCCGGTC 59.072 50.000 1.90 0.00 44.53 4.79
3029 3995 5.177327 AGTTGAACAGTGCAAACAAAAGTTG 59.823 36.000 0.00 0.00 0.00 3.16
3030 3996 5.296748 AGTTGAACAGTGCAAACAAAAGTT 58.703 33.333 0.00 0.00 0.00 2.66
3031 3997 4.881920 AGTTGAACAGTGCAAACAAAAGT 58.118 34.783 0.00 0.00 0.00 2.66
3032 3998 5.404968 TGAAGTTGAACAGTGCAAACAAAAG 59.595 36.000 0.00 0.00 0.00 2.27
3033 3999 5.292765 TGAAGTTGAACAGTGCAAACAAAA 58.707 33.333 0.00 0.00 0.00 2.44
3034 4000 4.876125 TGAAGTTGAACAGTGCAAACAAA 58.124 34.783 0.00 0.00 0.00 2.83
3035 4001 4.217334 TCTGAAGTTGAACAGTGCAAACAA 59.783 37.500 0.00 0.00 35.84 2.83
3036 4002 3.755905 TCTGAAGTTGAACAGTGCAAACA 59.244 39.130 0.00 0.00 35.84 2.83
3037 4003 4.098416 GTCTGAAGTTGAACAGTGCAAAC 58.902 43.478 0.00 0.00 35.84 2.93
3038 4004 3.755905 TGTCTGAAGTTGAACAGTGCAAA 59.244 39.130 0.00 0.00 35.84 3.68
3039 4005 3.342719 TGTCTGAAGTTGAACAGTGCAA 58.657 40.909 0.00 0.00 35.84 4.08
3040 4006 2.938451 CTGTCTGAAGTTGAACAGTGCA 59.062 45.455 0.00 0.00 35.84 4.57
3041 4007 2.289002 CCTGTCTGAAGTTGAACAGTGC 59.711 50.000 0.00 0.00 35.84 4.40
3042 4008 3.797039 TCCTGTCTGAAGTTGAACAGTG 58.203 45.455 0.00 0.00 35.84 3.66
3043 4009 4.696479 ATCCTGTCTGAAGTTGAACAGT 57.304 40.909 0.00 0.00 35.84 3.55
3044 4010 5.303971 AGAATCCTGTCTGAAGTTGAACAG 58.696 41.667 0.00 0.00 35.72 3.16
3045 4011 5.163311 TGAGAATCCTGTCTGAAGTTGAACA 60.163 40.000 0.00 0.00 0.00 3.18
3052 4018 3.056536 TCCGTTGAGAATCCTGTCTGAAG 60.057 47.826 0.00 0.00 0.00 3.02
3065 4031 2.258591 GCGCAGTCTCCGTTGAGA 59.741 61.111 0.30 0.00 45.39 3.27
3071 4037 0.240945 AAAAATTGGCGCAGTCTCCG 59.759 50.000 10.83 0.00 0.00 4.63
3078 4044 4.555262 CTTAGGAAAGAAAAATTGGCGCA 58.445 39.130 10.83 0.00 34.37 6.09
3081 4047 5.152623 AGCCTTAGGAAAGAAAAATTGGC 57.847 39.130 0.69 0.00 34.37 4.52
3084 4050 6.650427 ACGAAGCCTTAGGAAAGAAAAATT 57.350 33.333 0.69 0.00 34.37 1.82
3091 4057 2.685100 ACGAACGAAGCCTTAGGAAAG 58.315 47.619 0.69 0.00 0.00 2.62
3093 4059 2.825861 AACGAACGAAGCCTTAGGAA 57.174 45.000 0.69 0.00 0.00 3.36
3094 4060 2.825861 AAACGAACGAAGCCTTAGGA 57.174 45.000 0.69 0.00 0.00 2.94
3095 4061 4.033702 GGATTAAACGAACGAAGCCTTAGG 59.966 45.833 0.14 0.00 0.00 2.69
3096 4062 4.033702 GGGATTAAACGAACGAAGCCTTAG 59.966 45.833 0.14 0.00 0.00 2.18
3129 4095 0.618981 GACAAAACCCCTCCGATCCT 59.381 55.000 0.00 0.00 0.00 3.24
3304 4270 2.568623 AGAGATGAGGCGTGGTTTTT 57.431 45.000 0.00 0.00 0.00 1.94
3312 4278 1.691196 AGAGGAGAAGAGATGAGGCG 58.309 55.000 0.00 0.00 0.00 5.52
3314 4280 4.065088 CGACTAGAGGAGAAGAGATGAGG 58.935 52.174 0.00 0.00 0.00 3.86
3315 4281 4.703897 ACGACTAGAGGAGAAGAGATGAG 58.296 47.826 0.00 0.00 0.00 2.90
3328 4294 3.719083 TTCGAGACGAAACGACTAGAG 57.281 47.619 0.00 0.00 43.00 2.43
3387 4353 4.798682 TCTCCGGCTCCTTCCCCC 62.799 72.222 0.00 0.00 0.00 5.40
3394 4360 1.995646 GAGTTCGTCTCTCCGGCTCC 61.996 65.000 0.00 0.00 39.86 4.70
3473 4439 0.462789 GCAATCCAGGCCATCTTTGG 59.537 55.000 5.01 2.91 46.66 3.28
3486 4452 2.819608 TGGTCTTTTGTAGCAGCAATCC 59.180 45.455 0.00 0.00 0.00 3.01
3518 4484 1.550524 TGATTTCGTCCCCAGTCTCTG 59.449 52.381 0.00 0.00 0.00 3.35
3525 4491 0.393448 TGTTCGTGATTTCGTCCCCA 59.607 50.000 0.00 0.00 0.00 4.96
3528 4494 2.658224 CGTGTTGTTCGTGATTTCGTCC 60.658 50.000 0.00 0.00 0.00 4.79
3529 4495 2.546665 CGTGTTGTTCGTGATTTCGTC 58.453 47.619 0.00 0.00 0.00 4.20
3533 4501 0.041663 CGCCGTGTTGTTCGTGATTT 60.042 50.000 0.00 0.00 0.00 2.17
3544 4512 4.344865 AAGGGATGCCGCCGTGTT 62.345 61.111 0.00 0.00 0.00 3.32
3545 4513 4.778143 GAAGGGATGCCGCCGTGT 62.778 66.667 0.00 0.00 0.00 4.49
3598 8776 3.044873 AGGAGAATCAAGGGAGAGAGG 57.955 52.381 0.00 0.00 36.25 3.69
3609 8787 1.283347 AGCAGCAGGAAGGAGAATCA 58.717 50.000 0.00 0.00 36.25 2.57
3647 8826 4.444876 GGATTACAGAGATTTGGGCAGCTA 60.445 45.833 0.00 0.00 0.00 3.32
3652 8831 3.891049 ACAGGATTACAGAGATTTGGGC 58.109 45.455 0.00 0.00 0.00 5.36
3695 8874 3.056393 TGGAGGATTGTGTTACGTACCAG 60.056 47.826 0.00 0.00 0.00 4.00
3710 8889 2.169352 CAGTCGGTCTTCAATGGAGGAT 59.831 50.000 0.00 0.00 31.23 3.24
3711 8890 1.550524 CAGTCGGTCTTCAATGGAGGA 59.449 52.381 0.00 0.00 0.00 3.71
3712 8891 1.276421 ACAGTCGGTCTTCAATGGAGG 59.724 52.381 0.00 0.00 0.00 4.30
3743 9313 3.023735 GCTGGGGAGGGGGTTCAT 61.024 66.667 0.00 0.00 0.00 2.57
3781 9641 1.067142 CGTGTCGGGATGGAAGAAGAA 60.067 52.381 0.00 0.00 0.00 2.52
3891 9799 5.335127 CAAAAATCTTATCCGTGGCAAGAG 58.665 41.667 0.76 0.00 32.16 2.85
3896 9804 2.481276 GGGCAAAAATCTTATCCGTGGC 60.481 50.000 0.00 0.00 0.00 5.01
3933 9841 5.824624 TGGAAGCCTAGCAGAATAGAAATTG 59.175 40.000 0.00 0.00 0.00 2.32
3962 11411 1.949799 ACACCTCTCTCTTGGCAGAT 58.050 50.000 0.00 0.00 0.00 2.90
4098 11547 1.889829 CGGTCTCTGGACTTCTCTTGT 59.110 52.381 0.00 0.00 41.82 3.16
4112 11561 2.488153 AGCAAACAAATAAGCCGGTCTC 59.512 45.455 1.90 0.00 0.00 3.36
4114 11563 2.488153 AGAGCAAACAAATAAGCCGGTC 59.512 45.455 1.90 0.00 0.00 4.79
4115 11564 2.228822 CAGAGCAAACAAATAAGCCGGT 59.771 45.455 1.90 0.00 0.00 5.28
4116 11565 2.867429 CAGAGCAAACAAATAAGCCGG 58.133 47.619 0.00 0.00 0.00 6.13
4117 11566 2.095059 AGCAGAGCAAACAAATAAGCCG 60.095 45.455 0.00 0.00 0.00 5.52
4118 11567 3.248266 CAGCAGAGCAAACAAATAAGCC 58.752 45.455 0.00 0.00 0.00 4.35
4119 11568 2.665052 GCAGCAGAGCAAACAAATAAGC 59.335 45.455 0.00 0.00 0.00 3.09
4120 11569 3.918591 CAGCAGCAGAGCAAACAAATAAG 59.081 43.478 0.00 0.00 36.85 1.73
4121 11570 3.318839 ACAGCAGCAGAGCAAACAAATAA 59.681 39.130 0.00 0.00 36.85 1.40
4123 11572 1.684983 ACAGCAGCAGAGCAAACAAAT 59.315 42.857 0.00 0.00 36.85 2.32
4137 11586 1.089920 GTGGTATTCAGGCACAGCAG 58.910 55.000 0.00 0.00 0.00 4.24
4139 11588 1.755179 ATGTGGTATTCAGGCACAGC 58.245 50.000 0.00 0.00 0.00 4.40
4140 11589 4.012374 AGAAATGTGGTATTCAGGCACAG 58.988 43.478 0.00 0.00 0.00 3.66
4141 11590 3.758023 CAGAAATGTGGTATTCAGGCACA 59.242 43.478 0.00 0.00 0.00 4.57
4142 11591 3.758554 ACAGAAATGTGGTATTCAGGCAC 59.241 43.478 0.00 0.00 0.00 5.01
4143 11592 4.032960 ACAGAAATGTGGTATTCAGGCA 57.967 40.909 0.00 0.00 0.00 4.75
4144 11593 4.702131 AGAACAGAAATGTGGTATTCAGGC 59.298 41.667 0.00 0.00 0.00 4.85
4146 11595 6.875726 TGAGAGAACAGAAATGTGGTATTCAG 59.124 38.462 0.00 0.00 0.00 3.02
4147 11596 6.650807 GTGAGAGAACAGAAATGTGGTATTCA 59.349 38.462 0.00 0.00 0.00 2.57
4148 11597 6.650807 TGTGAGAGAACAGAAATGTGGTATTC 59.349 38.462 0.00 0.00 0.00 1.75
4152 11601 4.422073 TGTGAGAGAACAGAAATGTGGT 57.578 40.909 0.00 0.00 0.00 4.16
4170 11719 4.094739 TCAATCAGGTTTGCGATACATGTG 59.905 41.667 9.11 0.00 0.00 3.21
4174 11723 4.094739 CACATCAATCAGGTTTGCGATACA 59.905 41.667 0.00 0.00 0.00 2.29
4187 11736 2.425668 CTCATTGCCTGCACATCAATCA 59.574 45.455 0.00 0.00 0.00 2.57
4188 11737 2.798499 GCTCATTGCCTGCACATCAATC 60.798 50.000 0.00 0.00 35.15 2.67
4189 11738 1.136305 GCTCATTGCCTGCACATCAAT 59.864 47.619 0.00 0.00 35.15 2.57
4190 11739 0.528924 GCTCATTGCCTGCACATCAA 59.471 50.000 0.00 0.00 35.15 2.57
4216 11769 0.034186 TGGTTCCCATGACCATGAGC 60.034 55.000 11.28 2.68 42.06 4.26
4227 11780 2.160171 CACCCCCTCTTGGTTCCCA 61.160 63.158 0.00 0.00 32.46 4.37
4388 11941 1.078918 TGTGAGAAGATGGCAGCGG 60.079 57.895 0.00 0.00 0.00 5.52
4509 12062 2.411547 GCAAGGAGTGTTCATTCGTTCG 60.412 50.000 1.47 0.00 0.00 3.95
4529 12082 1.065126 AGAACAATGGCTAGGACTGGC 60.065 52.381 0.00 0.00 36.25 4.85
4530 12083 3.012518 CAAGAACAATGGCTAGGACTGG 58.987 50.000 0.00 0.00 0.00 4.00
4531 12084 3.679389 ACAAGAACAATGGCTAGGACTG 58.321 45.455 0.00 0.00 0.00 3.51
4572 12126 3.667960 GCCAGTGTGAAGCAAATCTTACG 60.668 47.826 0.00 0.00 34.56 3.18
4583 12137 0.396435 TACCACCTGCCAGTGTGAAG 59.604 55.000 12.97 2.79 35.93 3.02
4584 12138 0.396435 CTACCACCTGCCAGTGTGAA 59.604 55.000 12.97 2.97 35.93 3.18
4585 12139 0.471022 TCTACCACCTGCCAGTGTGA 60.471 55.000 12.97 0.00 35.93 3.58
4586 12140 0.036952 CTCTACCACCTGCCAGTGTG 60.037 60.000 6.40 6.40 35.93 3.82
4710 12264 4.441695 TCCTGAAGCTGCTCCGCG 62.442 66.667 1.00 0.00 34.40 6.46
4772 12326 4.767255 GCAGCCTCCTGACACCGG 62.767 72.222 0.00 0.00 41.77 5.28
4827 12381 6.970484 TCTGAAGAAAAATGCCAAGTTAGTC 58.030 36.000 0.00 0.00 0.00 2.59
4829 12383 7.040823 ACTCTCTGAAGAAAAATGCCAAGTTAG 60.041 37.037 0.00 0.00 0.00 2.34
4830 12384 6.772716 ACTCTCTGAAGAAAAATGCCAAGTTA 59.227 34.615 0.00 0.00 0.00 2.24
4831 12385 5.595952 ACTCTCTGAAGAAAAATGCCAAGTT 59.404 36.000 0.00 0.00 0.00 2.66
4832 12386 5.009410 CACTCTCTGAAGAAAAATGCCAAGT 59.991 40.000 0.00 0.00 0.00 3.16
4833 12387 5.240183 TCACTCTCTGAAGAAAAATGCCAAG 59.760 40.000 0.00 0.00 0.00 3.61
4834 12388 5.132502 TCACTCTCTGAAGAAAAATGCCAA 58.867 37.500 0.00 0.00 0.00 4.52
4835 12389 4.717877 TCACTCTCTGAAGAAAAATGCCA 58.282 39.130 0.00 0.00 0.00 4.92
4836 12390 5.413833 TGATCACTCTCTGAAGAAAAATGCC 59.586 40.000 0.00 0.00 30.60 4.40
4837 12391 6.492007 TGATCACTCTCTGAAGAAAAATGC 57.508 37.500 0.00 0.00 30.60 3.56
4838 12392 8.265165 TCATGATCACTCTCTGAAGAAAAATG 57.735 34.615 0.00 0.00 30.60 2.32
4839 12393 8.102047 ACTCATGATCACTCTCTGAAGAAAAAT 58.898 33.333 0.00 0.00 30.60 1.82
4840 12394 7.448420 ACTCATGATCACTCTCTGAAGAAAAA 58.552 34.615 0.00 0.00 30.60 1.94
4841 12395 7.002250 ACTCATGATCACTCTCTGAAGAAAA 57.998 36.000 0.00 0.00 30.60 2.29
4842 12396 6.602410 ACTCATGATCACTCTCTGAAGAAA 57.398 37.500 0.00 0.00 30.60 2.52
4843 12397 7.894753 ATACTCATGATCACTCTCTGAAGAA 57.105 36.000 0.00 0.00 30.60 2.52
4844 12398 7.894753 AATACTCATGATCACTCTCTGAAGA 57.105 36.000 0.00 0.00 30.60 2.87
4846 12400 9.978044 CATTAATACTCATGATCACTCTCTGAA 57.022 33.333 0.00 0.00 30.60 3.02
4847 12401 8.583296 CCATTAATACTCATGATCACTCTCTGA 58.417 37.037 0.00 0.00 0.00 3.27
4858 12412 9.104713 ACCATCATAGACCATTAATACTCATGA 57.895 33.333 0.00 0.00 0.00 3.07
4861 12415 8.262601 ACACCATCATAGACCATTAATACTCA 57.737 34.615 0.00 0.00 0.00 3.41
4865 12419 9.942850 CACATACACCATCATAGACCATTAATA 57.057 33.333 0.00 0.00 0.00 0.98
4866 12420 7.391554 GCACATACACCATCATAGACCATTAAT 59.608 37.037 0.00 0.00 0.00 1.40
4867 12421 6.710295 GCACATACACCATCATAGACCATTAA 59.290 38.462 0.00 0.00 0.00 1.40
4869 12442 5.065914 GCACATACACCATCATAGACCATT 58.934 41.667 0.00 0.00 0.00 3.16
4891 12464 1.297664 CACAGAATCCAGCAGCTAGC 58.702 55.000 6.62 6.62 46.19 3.42
4892 12465 2.277969 CACACAGAATCCAGCAGCTAG 58.722 52.381 0.00 0.00 0.00 3.42
4928 12501 1.153469 CGCCTTCTTCCTGAGCTCC 60.153 63.158 12.15 0.00 0.00 4.70
4933 12506 2.469465 CTTGGGCGCCTTCTTCCTGA 62.469 60.000 28.56 0.68 0.00 3.86
5012 12585 4.728409 TGAGCAACAGAGCCATGG 57.272 55.556 7.63 7.63 34.23 3.66
5038 12611 2.809696 GCCGGCTGAAACAAAACTAGTA 59.190 45.455 22.15 0.00 0.00 1.82
5063 12636 2.915463 CAGTAAACATCACGGTCTCGAC 59.085 50.000 0.00 0.00 40.11 4.20
5064 12637 2.094906 CCAGTAAACATCACGGTCTCGA 60.095 50.000 0.00 0.00 40.11 4.04
5066 12639 3.192844 TCTCCAGTAAACATCACGGTCTC 59.807 47.826 0.00 0.00 0.00 3.36
5175 12758 0.038526 GAACTCCGCTTCTTCGACCA 60.039 55.000 0.00 0.00 0.00 4.02
5449 13035 4.110036 GGTTCCAATCAACCATAGCAAC 57.890 45.455 0.00 0.00 44.79 4.17
5552 13159 6.165577 GCAGTAACATTTCCCATTGACAATT 58.834 36.000 0.00 0.00 0.00 2.32
5597 13204 1.914634 CTTTCGCACGTAGCATCTCT 58.085 50.000 9.95 0.00 46.13 3.10
5620 13235 7.125659 TCCCATTCTTACATCAGAACACAGATA 59.874 37.037 0.00 0.00 35.57 1.98
5621 13236 6.070021 TCCCATTCTTACATCAGAACACAGAT 60.070 38.462 0.00 0.00 35.57 2.90
5622 13237 5.248248 TCCCATTCTTACATCAGAACACAGA 59.752 40.000 0.00 0.00 35.57 3.41
5630 13249 6.881065 TGTTTCTTCTCCCATTCTTACATCAG 59.119 38.462 0.00 0.00 0.00 2.90
5636 13255 6.375455 GCTGAATGTTTCTTCTCCCATTCTTA 59.625 38.462 11.23 0.00 42.21 2.10
5703 15223 7.013178 TGACAAACTGAAGCATCATTTTCTACA 59.987 33.333 4.50 3.67 36.59 2.74
5719 15239 5.607939 TTCTACTGAGGTTGACAAACTGA 57.392 39.130 11.31 0.25 36.48 3.41
5804 15324 6.046593 TCATGTTATCCATCGTGAACCTTAC 58.953 40.000 0.00 0.00 0.00 2.34
5861 15381 3.414700 GAGGTGTGAAGCGGTGCG 61.415 66.667 0.00 0.00 0.00 5.34
5865 15385 2.386661 ACTATTGAGGTGTGAAGCGG 57.613 50.000 0.00 0.00 0.00 5.52
5929 15450 4.383173 GGAAACGGTGAGACTTTTCCTTA 58.617 43.478 7.94 0.00 42.53 2.69
5933 15454 4.451435 CCTTAGGAAACGGTGAGACTTTTC 59.549 45.833 0.00 0.00 0.00 2.29
5944 15471 7.052142 AGATCAGTATAACCTTAGGAAACGG 57.948 40.000 4.77 0.00 0.00 4.44
5971 15498 6.829298 TCCTTTGTGTTACCATTGACTTTGTA 59.171 34.615 0.00 0.00 0.00 2.41
5976 15503 4.578928 GTGTCCTTTGTGTTACCATTGACT 59.421 41.667 0.00 0.00 0.00 3.41
6018 15545 7.666623 AGCAAAAGATCTCTAGCTAAGTATCC 58.333 38.462 12.43 0.00 30.46 2.59
6075 15606 0.803117 ACACAGATGACGACGACGAT 59.197 50.000 15.32 0.00 42.66 3.73
6321 16043 5.359194 AGAAACAGGTTCTGAAACTGAGA 57.641 39.130 35.08 0.00 45.29 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.