Multiple sequence alignment - TraesCS4A01G079500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G079500 chr4A 100.000 9085 0 0 1 9085 81281553 81272469 0.000000e+00 16777.0
1 TraesCS4A01G079500 chr4A 99.533 857 4 0 5649 6505 452470760 452469904 0.000000e+00 1561.0
2 TraesCS4A01G079500 chr4A 92.015 263 21 0 562 824 410365098 410364836 4.010000e-98 370.0
3 TraesCS4A01G079500 chr4A 93.846 65 4 0 7531 7595 81273977 81273913 2.090000e-16 99.0
4 TraesCS4A01G079500 chr4A 93.846 65 4 0 7577 7641 81274023 81273959 2.090000e-16 99.0
5 TraesCS4A01G079500 chr4A 89.855 69 7 0 2204 2272 616236976 616236908 1.260000e-13 89.8
6 TraesCS4A01G079500 chr4D 94.614 2692 94 15 819 3496 382322243 382324897 0.000000e+00 4120.0
7 TraesCS4A01G079500 chr4D 95.484 2126 81 9 3528 5650 382324900 382327013 0.000000e+00 3380.0
8 TraesCS4A01G079500 chr4D 95.792 903 21 6 8185 9085 382328640 382329527 0.000000e+00 1441.0
9 TraesCS4A01G079500 chr4D 96.181 864 27 2 6503 7360 382327001 382327864 0.000000e+00 1408.0
10 TraesCS4A01G079500 chr4D 97.333 600 14 2 7577 8175 382327998 382328596 0.000000e+00 1018.0
11 TraesCS4A01G079500 chr4D 89.306 346 28 3 3 340 382321645 382321989 8.430000e-115 425.0
12 TraesCS4A01G079500 chr4D 97.093 172 3 2 7424 7595 382327892 382328061 1.150000e-73 289.0
13 TraesCS4A01G079500 chr4D 89.450 218 18 2 348 565 382322036 382322248 4.180000e-68 270.0
14 TraesCS4A01G079500 chr4B 93.163 2355 98 24 1316 3651 469504509 469506819 0.000000e+00 3398.0
15 TraesCS4A01G079500 chr4B 95.389 2017 72 11 3644 5650 469507185 469509190 0.000000e+00 3190.0
16 TraesCS4A01G079500 chr4B 95.277 1101 42 5 6503 7595 469509178 469510276 0.000000e+00 1736.0
17 TraesCS4A01G079500 chr4B 99.419 861 4 1 5651 6510 121655170 121654310 0.000000e+00 1561.0
18 TraesCS4A01G079500 chr4B 93.805 904 31 8 8185 9085 469510864 469511745 0.000000e+00 1336.0
19 TraesCS4A01G079500 chr4B 95.402 609 18 3 7577 8175 469510212 469510820 0.000000e+00 961.0
20 TraesCS4A01G079500 chr4B 94.433 467 21 4 820 1284 469504049 469504512 0.000000e+00 713.0
21 TraesCS4A01G079500 chr4B 91.168 351 24 1 3 346 469503011 469503361 3.840000e-128 470.0
22 TraesCS4A01G079500 chr4B 92.056 214 9 1 352 565 469503848 469504053 2.480000e-75 294.0
23 TraesCS4A01G079500 chr1A 99.071 861 6 2 5651 6509 498014347 498013487 0.000000e+00 1544.0
24 TraesCS4A01G079500 chr1A 95.465 860 37 2 5648 6505 69549339 69550198 0.000000e+00 1371.0
25 TraesCS4A01G079500 chr1A 91.525 59 5 0 2260 2318 225514970 225514912 2.100000e-11 82.4
26 TraesCS4A01G079500 chr1A 80.000 110 19 2 1897 2006 104946166 104946060 2.720000e-10 78.7
27 TraesCS4A01G079500 chr7B 99.183 857 4 3 5650 6505 364717679 364716825 0.000000e+00 1541.0
28 TraesCS4A01G079500 chr7B 98.833 857 9 1 5651 6506 350073630 350072774 0.000000e+00 1526.0
29 TraesCS4A01G079500 chr5B 95.481 863 34 5 5651 6509 674035982 674036843 0.000000e+00 1373.0
30 TraesCS4A01G079500 chr5B 94.966 874 41 2 5643 6513 172207092 172206219 0.000000e+00 1367.0
31 TraesCS4A01G079500 chr5B 92.015 263 21 0 563 825 27825300 27825038 4.010000e-98 370.0
32 TraesCS4A01G079500 chr5A 94.731 873 41 4 5638 6506 277308989 277309860 0.000000e+00 1352.0
33 TraesCS4A01G079500 chr7D 93.233 266 17 1 563 827 459742873 459743138 3.080000e-104 390.0
34 TraesCS4A01G079500 chr7D 91.635 263 21 1 563 825 270700359 270700098 6.700000e-96 363.0
35 TraesCS4A01G079500 chr7D 91.603 262 21 1 563 824 272759444 272759184 2.410000e-95 361.0
36 TraesCS4A01G079500 chr7D 89.535 86 5 3 2999 3080 615904350 615904265 1.250000e-18 106.0
37 TraesCS4A01G079500 chr3A 92.015 263 21 0 563 825 23631543 23631281 4.010000e-98 370.0
38 TraesCS4A01G079500 chr6D 90.706 269 25 0 563 831 360671225 360670957 8.670000e-95 359.0
39 TraesCS4A01G079500 chr6D 84.906 106 14 1 2213 2318 101257721 101257618 1.250000e-18 106.0
40 TraesCS4A01G079500 chr6D 87.500 88 7 4 3008 3092 368365285 368365371 2.090000e-16 99.0
41 TraesCS4A01G079500 chr6D 93.548 62 4 0 2204 2265 218404849 218404788 9.710000e-15 93.5
42 TraesCS4A01G079500 chr2D 90.977 266 23 1 560 825 316662146 316662410 3.120000e-94 357.0
43 TraesCS4A01G079500 chr2D 87.850 107 8 3 1899 2004 619562449 619562347 4.460000e-23 121.0
44 TraesCS4A01G079500 chr2D 93.056 72 4 1 3007 3077 327614898 327614827 4.490000e-18 104.0
45 TraesCS4A01G079500 chr3D 90.110 273 26 1 559 831 231411680 231411409 4.040000e-93 353.0
46 TraesCS4A01G079500 chr3D 90.291 103 10 0 2206 2308 305629472 305629574 1.590000e-27 135.0
47 TraesCS4A01G079500 chr6B 92.708 96 7 0 2213 2308 185678673 185678578 1.230000e-28 139.0
48 TraesCS4A01G079500 chr6B 94.203 69 4 0 2205 2273 343027025 343027093 1.250000e-18 106.0
49 TraesCS4A01G079500 chr6B 87.500 88 7 4 3008 3092 553057202 553057116 2.090000e-16 99.0
50 TraesCS4A01G079500 chr6B 84.043 94 10 4 1899 1991 230487949 230488038 1.630000e-12 86.1
51 TraesCS4A01G079500 chr7A 86.290 124 11 4 1883 2003 48103055 48103175 7.400000e-26 130.0
52 TraesCS4A01G079500 chr5D 89.655 87 6 3 3008 3092 549851359 549851444 3.470000e-19 108.0
53 TraesCS4A01G079500 chr5D 85.106 94 12 2 2986 3077 543223203 543223110 2.700000e-15 95.3
54 TraesCS4A01G079500 chr5D 87.671 73 9 0 2204 2276 552050261 552050189 1.630000e-12 86.1
55 TraesCS4A01G079500 chr3B 87.778 90 8 2 1914 2003 487049280 487049194 1.610000e-17 102.0
56 TraesCS4A01G079500 chr6A 87.500 88 7 4 3008 3092 509279058 509279144 2.090000e-16 99.0
57 TraesCS4A01G079500 chr6A 90.000 70 7 0 2204 2273 297647675 297647606 3.490000e-14 91.6
58 TraesCS4A01G079500 chr1B 84.946 93 11 2 1899 1991 370729876 370729965 3.490000e-14 91.6
59 TraesCS4A01G079500 chr1B 91.525 59 5 0 2260 2318 249624538 249624596 2.100000e-11 82.4
60 TraesCS4A01G079500 chr1D 91.525 59 5 0 2260 2318 169065761 169065703 2.100000e-11 82.4
61 TraesCS4A01G079500 chr1D 80.952 105 17 2 1899 2003 128528616 128528717 7.560000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G079500 chr4A 81272469 81281553 9084 True 16777.000 16777 100.000000 1 9085 1 chr4A.!!$R1 9084
1 TraesCS4A01G079500 chr4A 452469904 452470760 856 True 1561.000 1561 99.533000 5649 6505 1 chr4A.!!$R3 856
2 TraesCS4A01G079500 chr4D 382321645 382329527 7882 False 1543.875 4120 94.406625 3 9085 8 chr4D.!!$F1 9082
3 TraesCS4A01G079500 chr4B 121654310 121655170 860 True 1561.000 1561 99.419000 5651 6510 1 chr4B.!!$R1 859
4 TraesCS4A01G079500 chr4B 469503011 469511745 8734 False 1512.250 3398 93.836625 3 9085 8 chr4B.!!$F1 9082
5 TraesCS4A01G079500 chr1A 498013487 498014347 860 True 1544.000 1544 99.071000 5651 6509 1 chr1A.!!$R3 858
6 TraesCS4A01G079500 chr1A 69549339 69550198 859 False 1371.000 1371 95.465000 5648 6505 1 chr1A.!!$F1 857
7 TraesCS4A01G079500 chr7B 364716825 364717679 854 True 1541.000 1541 99.183000 5650 6505 1 chr7B.!!$R2 855
8 TraesCS4A01G079500 chr7B 350072774 350073630 856 True 1526.000 1526 98.833000 5651 6506 1 chr7B.!!$R1 855
9 TraesCS4A01G079500 chr5B 674035982 674036843 861 False 1373.000 1373 95.481000 5651 6509 1 chr5B.!!$F1 858
10 TraesCS4A01G079500 chr5B 172206219 172207092 873 True 1367.000 1367 94.966000 5643 6513 1 chr5B.!!$R2 870
11 TraesCS4A01G079500 chr5A 277308989 277309860 871 False 1352.000 1352 94.731000 5638 6506 1 chr5A.!!$F1 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 1071 0.115745 TACTCCCTCCGGTCCTTTGT 59.884 55.000 0.00 0.00 0.00 2.83 F
584 1074 0.115745 TCCCTCCGGTCCTTTGTACT 59.884 55.000 0.00 0.00 0.00 2.73 F
1638 2134 0.307760 GAGGCACAACCACGTTTGAG 59.692 55.000 6.97 0.39 43.14 3.02 F
2790 3310 1.466360 GCGCCACATGCTTGTTCTTAG 60.466 52.381 1.83 0.00 38.05 2.18 F
3636 4159 1.771783 ATGCACACCTGCTGACCTGA 61.772 55.000 0.00 0.00 44.57 3.86 F
4292 5188 0.808060 TTGCAGTTCGCTCGTTCACA 60.808 50.000 0.00 0.00 43.06 3.58 F
5100 6007 0.322726 TGCACCAGCTACATGCATGT 60.323 50.000 33.20 33.20 44.17 3.21 F
5271 6178 1.022451 GGCGAATCTGGCACCGTTTA 61.022 55.000 0.00 0.00 0.00 2.01 F
7153 8071 0.400213 TGTGGGGCAGGTAAAGACTG 59.600 55.000 0.00 0.00 38.95 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 3041 0.734889 CCGTGAGCAATGTGATTCCC 59.265 55.000 0.00 0.00 0.00 3.97 R
2663 3182 7.121315 AGCATATTTTGAAGGAACTAACCTGAC 59.879 37.037 0.00 0.00 38.49 3.51 R
3621 4144 1.002888 CAGATTCAGGTCAGCAGGTGT 59.997 52.381 0.00 0.00 0.00 4.16 R
4017 4913 0.105778 TGCACACATGTTGTCCTCGA 59.894 50.000 0.00 0.00 35.67 4.04 R
4930 5837 0.441533 CTTGCTGCAGCTTCTACACG 59.558 55.000 36.61 11.66 42.66 4.49 R
5317 6224 1.682849 CCACTGAACCCCGATTCCA 59.317 57.895 0.00 0.00 0.00 3.53 R
7082 8000 0.252761 TCATGAATGCCGAGCTGGAA 59.747 50.000 0.00 0.00 42.00 3.53 R
7237 8156 2.257894 CTTCTCAGACACGCAGATCAC 58.742 52.381 0.00 0.00 0.00 3.06 R
8551 9516 1.067915 CGCATTTGGTGTAAAGTGGGG 60.068 52.381 0.00 0.00 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.219646 GTCGTTGGTTACTTCCGCAA 58.780 50.000 0.00 0.00 0.00 4.85
126 127 6.022107 TCCCATGAAAAATCTCTCCATGAT 57.978 37.500 0.00 0.00 37.41 2.45
198 200 7.760131 AAATCAAAACTAAATCATCGGCATG 57.240 32.000 0.00 0.00 0.00 4.06
227 236 2.418628 AGCCAAATCATACGAAACCACG 59.581 45.455 0.00 0.00 39.31 4.94
252 261 3.866703 TTGGTGACCTACAACCAATGA 57.133 42.857 2.11 0.00 35.99 2.57
340 349 2.534019 CCATATTGCGCGGCGACTT 61.534 57.895 28.54 11.46 0.00 3.01
355 845 1.303888 ACTTGCTCGTCGACCCCTA 60.304 57.895 10.58 0.00 0.00 3.53
422 912 0.457853 TTCAACCGATCTTCCTCGCG 60.458 55.000 0.00 0.00 37.33 5.87
451 941 3.926058 ATGCTAATAGAAACCACGGGT 57.074 42.857 0.00 0.00 37.65 5.28
474 964 3.181472 GGGCCTAAATGCAAAATCTCCAG 60.181 47.826 0.84 0.00 0.00 3.86
537 1027 2.103373 ACTCGCCTCAGCTGATTTAGA 58.897 47.619 18.63 13.09 36.60 2.10
559 1049 1.548081 TAATCCGAGTCAACCGTCCA 58.452 50.000 0.00 0.00 0.00 4.02
560 1050 0.682852 AATCCGAGTCAACCGTCCAA 59.317 50.000 0.00 0.00 0.00 3.53
561 1051 0.246635 ATCCGAGTCAACCGTCCAAG 59.753 55.000 0.00 0.00 0.00 3.61
562 1052 1.111116 TCCGAGTCAACCGTCCAAGT 61.111 55.000 0.00 0.00 0.00 3.16
563 1053 0.599558 CCGAGTCAACCGTCCAAGTA 59.400 55.000 0.00 0.00 0.00 2.24
564 1054 1.668047 CCGAGTCAACCGTCCAAGTAC 60.668 57.143 0.00 0.00 0.00 2.73
565 1055 1.268899 CGAGTCAACCGTCCAAGTACT 59.731 52.381 0.00 0.00 0.00 2.73
566 1056 2.667724 CGAGTCAACCGTCCAAGTACTC 60.668 54.545 0.00 0.00 0.00 2.59
567 1057 1.617357 AGTCAACCGTCCAAGTACTCC 59.383 52.381 0.00 0.00 0.00 3.85
568 1058 0.971386 TCAACCGTCCAAGTACTCCC 59.029 55.000 0.00 0.00 0.00 4.30
569 1059 0.974383 CAACCGTCCAAGTACTCCCT 59.026 55.000 0.00 0.00 0.00 4.20
570 1060 1.067071 CAACCGTCCAAGTACTCCCTC 60.067 57.143 0.00 0.00 0.00 4.30
571 1061 0.614134 ACCGTCCAAGTACTCCCTCC 60.614 60.000 0.00 0.00 0.00 4.30
572 1062 1.664321 CCGTCCAAGTACTCCCTCCG 61.664 65.000 0.00 0.00 0.00 4.63
573 1063 1.664321 CGTCCAAGTACTCCCTCCGG 61.664 65.000 0.00 0.00 0.00 5.14
574 1064 0.614134 GTCCAAGTACTCCCTCCGGT 60.614 60.000 0.00 0.00 0.00 5.28
575 1065 0.324091 TCCAAGTACTCCCTCCGGTC 60.324 60.000 0.00 0.00 0.00 4.79
576 1066 1.328430 CCAAGTACTCCCTCCGGTCC 61.328 65.000 0.00 0.00 0.00 4.46
577 1067 0.324460 CAAGTACTCCCTCCGGTCCT 60.324 60.000 0.00 0.00 0.00 3.85
578 1068 0.412640 AAGTACTCCCTCCGGTCCTT 59.587 55.000 0.00 0.00 0.00 3.36
579 1069 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
580 1070 0.535797 GTACTCCCTCCGGTCCTTTG 59.464 60.000 0.00 0.00 0.00 2.77
581 1071 0.115745 TACTCCCTCCGGTCCTTTGT 59.884 55.000 0.00 0.00 0.00 2.83
582 1072 0.115745 ACTCCCTCCGGTCCTTTGTA 59.884 55.000 0.00 0.00 0.00 2.41
583 1073 0.535797 CTCCCTCCGGTCCTTTGTAC 59.464 60.000 0.00 0.00 0.00 2.90
584 1074 0.115745 TCCCTCCGGTCCTTTGTACT 59.884 55.000 0.00 0.00 0.00 2.73
585 1075 0.535797 CCCTCCGGTCCTTTGTACTC 59.464 60.000 0.00 0.00 0.00 2.59
586 1076 1.558233 CCTCCGGTCCTTTGTACTCT 58.442 55.000 0.00 0.00 0.00 3.24
587 1077 1.204941 CCTCCGGTCCTTTGTACTCTG 59.795 57.143 0.00 0.00 0.00 3.35
588 1078 0.606604 TCCGGTCCTTTGTACTCTGC 59.393 55.000 0.00 0.00 0.00 4.26
589 1079 0.320374 CCGGTCCTTTGTACTCTGCA 59.680 55.000 0.00 0.00 0.00 4.41
590 1080 1.066143 CCGGTCCTTTGTACTCTGCAT 60.066 52.381 0.00 0.00 0.00 3.96
591 1081 2.167693 CCGGTCCTTTGTACTCTGCATA 59.832 50.000 0.00 0.00 0.00 3.14
592 1082 3.181465 CCGGTCCTTTGTACTCTGCATAT 60.181 47.826 0.00 0.00 0.00 1.78
593 1083 4.038763 CCGGTCCTTTGTACTCTGCATATA 59.961 45.833 0.00 0.00 0.00 0.86
594 1084 5.452776 CCGGTCCTTTGTACTCTGCATATAA 60.453 44.000 0.00 0.00 0.00 0.98
595 1085 5.692204 CGGTCCTTTGTACTCTGCATATAAG 59.308 44.000 0.00 0.00 0.00 1.73
596 1086 6.461092 CGGTCCTTTGTACTCTGCATATAAGA 60.461 42.308 0.00 0.00 0.00 2.10
597 1087 7.272978 GGTCCTTTGTACTCTGCATATAAGAA 58.727 38.462 0.00 0.00 0.00 2.52
598 1088 7.934120 GGTCCTTTGTACTCTGCATATAAGAAT 59.066 37.037 0.00 0.00 0.00 2.40
599 1089 9.331282 GTCCTTTGTACTCTGCATATAAGAATT 57.669 33.333 0.00 0.00 0.00 2.17
600 1090 9.330063 TCCTTTGTACTCTGCATATAAGAATTG 57.670 33.333 0.00 0.00 0.00 2.32
601 1091 9.113838 CCTTTGTACTCTGCATATAAGAATTGT 57.886 33.333 0.00 0.00 0.00 2.71
603 1093 8.662781 TTGTACTCTGCATATAAGAATTGTCC 57.337 34.615 0.00 0.00 0.00 4.02
604 1094 6.923508 TGTACTCTGCATATAAGAATTGTCCG 59.076 38.462 0.00 0.00 0.00 4.79
605 1095 6.161855 ACTCTGCATATAAGAATTGTCCGA 57.838 37.500 0.00 0.00 0.00 4.55
606 1096 6.582636 ACTCTGCATATAAGAATTGTCCGAA 58.417 36.000 0.00 0.00 0.00 4.30
607 1097 6.703607 ACTCTGCATATAAGAATTGTCCGAAG 59.296 38.462 0.00 0.00 0.00 3.79
608 1098 6.582636 TCTGCATATAAGAATTGTCCGAAGT 58.417 36.000 0.00 0.00 0.00 3.01
609 1099 6.701841 TCTGCATATAAGAATTGTCCGAAGTC 59.298 38.462 0.00 0.00 0.00 3.01
610 1100 6.345298 TGCATATAAGAATTGTCCGAAGTCA 58.655 36.000 0.00 0.00 0.00 3.41
611 1101 6.821160 TGCATATAAGAATTGTCCGAAGTCAA 59.179 34.615 0.00 0.00 0.00 3.18
612 1102 7.335673 TGCATATAAGAATTGTCCGAAGTCAAA 59.664 33.333 0.00 0.00 0.00 2.69
613 1103 7.640240 GCATATAAGAATTGTCCGAAGTCAAAC 59.360 37.037 0.00 0.00 0.00 2.93
614 1104 8.883731 CATATAAGAATTGTCCGAAGTCAAACT 58.116 33.333 0.00 0.00 0.00 2.66
615 1105 7.745620 ATAAGAATTGTCCGAAGTCAAACTT 57.254 32.000 0.00 0.00 41.95 2.66
772 1262 8.911247 ATAAAGTTGATCAAATTTTACGAGGC 57.089 30.769 31.53 7.53 39.07 4.70
773 1263 6.575162 AAGTTGATCAAATTTTACGAGGCT 57.425 33.333 15.05 0.00 0.00 4.58
774 1264 6.575162 AGTTGATCAAATTTTACGAGGCTT 57.425 33.333 10.35 0.00 0.00 4.35
775 1265 6.381801 AGTTGATCAAATTTTACGAGGCTTG 58.618 36.000 10.35 0.00 0.00 4.01
776 1266 6.206634 AGTTGATCAAATTTTACGAGGCTTGA 59.793 34.615 10.35 0.00 0.00 3.02
777 1267 5.938322 TGATCAAATTTTACGAGGCTTGAC 58.062 37.500 9.20 0.00 0.00 3.18
778 1268 5.705441 TGATCAAATTTTACGAGGCTTGACT 59.295 36.000 9.20 0.00 0.00 3.41
779 1269 6.206634 TGATCAAATTTTACGAGGCTTGACTT 59.793 34.615 9.20 0.00 0.00 3.01
780 1270 6.385649 TCAAATTTTACGAGGCTTGACTTT 57.614 33.333 9.20 0.00 0.00 2.66
781 1271 7.499321 TCAAATTTTACGAGGCTTGACTTTA 57.501 32.000 9.20 0.00 0.00 1.85
782 1272 7.581476 TCAAATTTTACGAGGCTTGACTTTAG 58.419 34.615 9.20 0.00 0.00 1.85
783 1273 7.442969 TCAAATTTTACGAGGCTTGACTTTAGA 59.557 33.333 9.20 0.00 0.00 2.10
784 1274 6.723131 ATTTTACGAGGCTTGACTTTAGAC 57.277 37.500 9.20 0.00 0.00 2.59
785 1275 4.859304 TTACGAGGCTTGACTTTAGACA 57.141 40.909 9.20 0.00 0.00 3.41
786 1276 3.746045 ACGAGGCTTGACTTTAGACAA 57.254 42.857 9.20 0.00 0.00 3.18
787 1277 4.067972 ACGAGGCTTGACTTTAGACAAA 57.932 40.909 9.20 0.00 30.22 2.83
788 1278 4.642429 ACGAGGCTTGACTTTAGACAAAT 58.358 39.130 9.20 0.00 30.22 2.32
789 1279 5.063880 ACGAGGCTTGACTTTAGACAAATT 58.936 37.500 9.20 0.00 30.22 1.82
790 1280 5.531287 ACGAGGCTTGACTTTAGACAAATTT 59.469 36.000 9.20 0.00 30.22 1.82
791 1281 6.039382 ACGAGGCTTGACTTTAGACAAATTTT 59.961 34.615 9.20 0.00 30.22 1.82
792 1282 7.227910 ACGAGGCTTGACTTTAGACAAATTTTA 59.772 33.333 9.20 0.00 30.22 1.52
793 1283 8.237267 CGAGGCTTGACTTTAGACAAATTTTAT 58.763 33.333 0.00 0.00 30.22 1.40
813 1303 7.868906 TTTATATGGGAAGTAAAAAGGACCG 57.131 36.000 0.00 0.00 0.00 4.79
814 1304 2.572209 TGGGAAGTAAAAAGGACCGG 57.428 50.000 0.00 0.00 0.00 5.28
815 1305 2.056359 TGGGAAGTAAAAAGGACCGGA 58.944 47.619 9.46 0.00 0.00 5.14
816 1306 2.039348 TGGGAAGTAAAAAGGACCGGAG 59.961 50.000 9.46 0.00 0.00 4.63
931 1421 2.385803 CTCTCGCTCTACCCCCTAAAA 58.614 52.381 0.00 0.00 0.00 1.52
969 1459 2.312140 TCTATCTCTTCCCCTATCCCCG 59.688 54.545 0.00 0.00 0.00 5.73
978 1469 1.416480 CCCTATCCCCGAGAAACCCC 61.416 65.000 0.00 0.00 0.00 4.95
979 1470 1.746517 CTATCCCCGAGAAACCCCG 59.253 63.158 0.00 0.00 0.00 5.73
1283 1774 5.680619 TGAACTTGAGCTGTTTTCTCCTAA 58.319 37.500 0.00 0.00 0.00 2.69
1546 2042 1.598676 CGATCATTTGCAATGGCGGAG 60.599 52.381 0.00 0.00 45.35 4.63
1638 2134 0.307760 GAGGCACAACCACGTTTGAG 59.692 55.000 6.97 0.39 43.14 3.02
1680 2176 6.684686 ACATATGCTTATTTGCTATGCTTGG 58.315 36.000 1.58 0.00 32.54 3.61
1688 2184 3.367992 TTGCTATGCTTGGTGTTTGTG 57.632 42.857 0.00 0.00 0.00 3.33
1693 2189 2.861462 TGCTTGGTGTTTGTGTAAGC 57.139 45.000 0.00 0.00 42.92 3.09
1763 2259 9.293404 GGATATGATGAATTGGAAGAGAATGAA 57.707 33.333 0.00 0.00 0.00 2.57
1911 2407 4.901785 TTATCTTGTACTCCCTCCCTCT 57.098 45.455 0.00 0.00 0.00 3.69
1925 2421 3.777522 CCTCCCTCTGGAATTAGTTGACT 59.222 47.826 0.00 0.00 41.17 3.41
1933 2429 8.043710 CCTCTGGAATTAGTTGACTATCAAACT 58.956 37.037 0.00 0.00 38.22 2.66
1957 2453 7.560262 ACTGATGTACCTAGTAGCACTGAAATA 59.440 37.037 0.00 0.00 0.00 1.40
1981 2477 4.401202 TGTCTAGATACATCCGTTTGAGCA 59.599 41.667 0.00 0.00 0.00 4.26
2001 2497 3.001330 GCATCAACTAATTCCGAACGGAG 59.999 47.826 15.34 7.27 46.06 4.63
2049 2546 3.870419 GACTGACTGATGAGATTGGCTTC 59.130 47.826 0.00 0.00 0.00 3.86
2131 2628 9.550406 GTACACTACACCATTATTTATAAGGCA 57.450 33.333 0.00 0.00 0.00 4.75
2333 2852 2.736400 CGATGCACTACACATGCTCTGA 60.736 50.000 0.00 0.00 43.77 3.27
2460 2979 5.794726 ATTGCTATGCCTATTTTGATGCA 57.205 34.783 0.00 0.00 38.23 3.96
2498 3017 4.127171 TGTTGCTTTCAGGAACTAGTGAC 58.873 43.478 9.24 0.00 45.30 3.67
2522 3041 3.171277 GGCAAAACTTATGCGTGCTAAG 58.829 45.455 0.00 8.53 44.75 2.18
2663 3182 4.753107 TGGGCTGTAAACGAGAAACTAAAG 59.247 41.667 0.00 0.00 0.00 1.85
2672 3191 7.710766 AAACGAGAAACTAAAGTCAGGTTAG 57.289 36.000 0.00 0.00 35.16 2.34
2721 3240 6.000891 TGTTCATTACTCATTTGTGCTGAC 57.999 37.500 0.00 0.00 0.00 3.51
2731 3251 3.552132 TTTGTGCTGACAAGGTACTCA 57.448 42.857 0.00 0.00 43.03 3.41
2790 3310 1.466360 GCGCCACATGCTTGTTCTTAG 60.466 52.381 1.83 0.00 38.05 2.18
2812 3332 5.445964 AGTGTTATGGGGCTTAAGTAATGG 58.554 41.667 4.02 0.00 0.00 3.16
2815 3335 2.818751 TGGGGCTTAAGTAATGGGTG 57.181 50.000 4.02 0.00 0.00 4.61
2819 3339 4.230964 TGGGGCTTAAGTAATGGGTGTATT 59.769 41.667 4.02 0.00 0.00 1.89
2870 3390 8.687242 TGTTGGCGTATTATTTTCCATAATTGA 58.313 29.630 0.00 0.00 0.00 2.57
3026 3547 8.146412 TGTTTACTACTCCCTCTGTAAAGAAAC 58.854 37.037 0.00 0.00 36.13 2.78
3028 3549 6.347859 ACTACTCCCTCTGTAAAGAAACAG 57.652 41.667 0.00 0.00 46.78 3.16
3110 3631 7.171848 TCTGCAACGTTTTACATAGTAATGTGT 59.828 33.333 0.00 0.00 45.99 3.72
3111 3632 7.640852 TGCAACGTTTTACATAGTAATGTGTT 58.359 30.769 0.00 0.00 45.99 3.32
3112 3633 8.129840 TGCAACGTTTTACATAGTAATGTGTTT 58.870 29.630 0.00 0.00 45.99 2.83
3113 3634 8.624028 GCAACGTTTTACATAGTAATGTGTTTC 58.376 33.333 0.00 0.00 45.99 2.78
3114 3635 9.872757 CAACGTTTTACATAGTAATGTGTTTCT 57.127 29.630 0.00 0.00 45.99 2.52
3153 3674 8.637196 TGACTATATGTTACCATCTCCTACAG 57.363 38.462 0.00 0.00 32.29 2.74
3176 3697 8.934697 ACAGTCTGGATAGCCAATACTTAAATA 58.065 33.333 11.08 0.00 45.41 1.40
3215 3737 7.692291 CGTAGTCATGCTTTTAACAAATCGATT 59.308 33.333 4.39 4.39 0.00 3.34
3277 3799 7.625828 AAAATGTGTTACCATAGAGGCTTAC 57.374 36.000 0.00 0.00 43.14 2.34
3337 3859 7.989947 ACTATTAGGTCACTCTATTGGGAAA 57.010 36.000 0.00 0.00 0.00 3.13
3338 3860 8.388656 ACTATTAGGTCACTCTATTGGGAAAA 57.611 34.615 0.00 0.00 0.00 2.29
3339 3861 8.265764 ACTATTAGGTCACTCTATTGGGAAAAC 58.734 37.037 0.00 0.00 0.00 2.43
3340 3862 3.939066 AGGTCACTCTATTGGGAAAACG 58.061 45.455 0.00 0.00 0.00 3.60
3386 3908 8.992073 CGATGATTCATGTAGGACATATTTCAA 58.008 33.333 3.32 0.00 36.53 2.69
3421 3944 5.475220 TCCACTGCAATTTCCTCGAATTTAA 59.525 36.000 0.00 0.00 0.00 1.52
3460 3983 6.943146 TGTTGGTTTACATTTGTAGAGCCATA 59.057 34.615 7.67 0.00 33.73 2.74
3461 3984 7.448777 TGTTGGTTTACATTTGTAGAGCCATAA 59.551 33.333 7.67 0.00 33.73 1.90
3496 4019 4.260212 CCGTCCAAAATAGAAGTGCATACG 60.260 45.833 0.00 0.00 0.00 3.06
3497 4020 4.328983 CGTCCAAAATAGAAGTGCATACGT 59.671 41.667 0.00 0.00 0.00 3.57
3514 4037 8.428536 GTGCATACGTTCTGTAGATTAATGATC 58.571 37.037 0.00 0.00 36.25 2.92
3516 4039 8.978539 GCATACGTTCTGTAGATTAATGATCAA 58.021 33.333 0.00 0.00 36.25 2.57
3621 4144 5.047021 GTCTATCAGACCATTAGGCTATGCA 60.047 44.000 0.00 0.00 39.28 3.96
3636 4159 1.771783 ATGCACACCTGCTGACCTGA 61.772 55.000 0.00 0.00 44.57 3.86
3718 4614 6.039605 TGCAGTGTCTTTGATTTCATTTCTGA 59.960 34.615 0.00 0.00 0.00 3.27
3803 4699 9.334947 ACTGATGAGAATCGAAATTATGTTGAT 57.665 29.630 0.00 0.00 38.61 2.57
3946 4842 3.382832 AGCGACCCTGAGAACCCG 61.383 66.667 0.00 0.00 0.00 5.28
3967 4863 7.290061 ACCCGTAACTATACACTATGGAGTAA 58.710 38.462 0.00 0.00 33.32 2.24
4017 4913 4.400251 ACCATTCGATCTGCATGACAAATT 59.600 37.500 0.00 0.00 0.00 1.82
4151 5047 3.713764 CTCATAGGTCCCAAATGGAGAGT 59.286 47.826 0.00 0.00 46.38 3.24
4224 5120 6.203145 TGACAAGAATTTGCATTCATTTGGTG 59.797 34.615 3.04 0.00 41.37 4.17
4292 5188 0.808060 TTGCAGTTCGCTCGTTCACA 60.808 50.000 0.00 0.00 43.06 3.58
4579 5485 3.866651 CTTAGCAGCTTGACTACATGGT 58.133 45.455 0.00 0.00 33.35 3.55
4668 5574 5.968528 ATTAATGCGTTGTTGACCCTTTA 57.031 34.783 0.08 0.00 0.00 1.85
4817 5723 3.708631 AGTCTCATCCGACCAGATTCATT 59.291 43.478 0.00 0.00 34.46 2.57
4833 5739 6.585322 CAGATTCATTGTTTTCTCCAGAAAGC 59.415 38.462 8.53 8.53 43.90 3.51
4892 5799 2.713708 AGGCCTTCCTAATTCCAGATCC 59.286 50.000 0.00 0.00 42.06 3.36
4947 5854 1.374631 CCGTGTAGAAGCTGCAGCA 60.375 57.895 38.24 17.15 45.16 4.41
4952 5859 3.265791 GTGTAGAAGCTGCAGCAAGTAT 58.734 45.455 38.24 22.59 45.16 2.12
4974 5881 2.029623 ACGTAGGACACATCGCCTTAT 58.970 47.619 0.00 0.00 35.73 1.73
5100 6007 0.322726 TGCACCAGCTACATGCATGT 60.323 50.000 33.20 33.20 44.17 3.21
5223 6130 2.436646 CACCAGGCTAGCCAACGG 60.437 66.667 34.70 30.20 38.92 4.44
5271 6178 1.022451 GGCGAATCTGGCACCGTTTA 61.022 55.000 0.00 0.00 0.00 2.01
5299 6206 3.441572 CGATCTGAGCAAATTTGAACCCT 59.558 43.478 22.31 8.95 0.00 4.34
5317 6224 7.918076 TGAACCCTGTTCTAGATAAATCTGTT 58.082 34.615 8.30 0.00 37.76 3.16
5644 6551 6.894654 TCCATGTCACAATACATACCCATTTT 59.105 34.615 0.00 0.00 38.01 1.82
5645 6552 8.055790 TCCATGTCACAATACATACCCATTTTA 58.944 33.333 0.00 0.00 38.01 1.52
5646 6553 8.352201 CCATGTCACAATACATACCCATTTTAG 58.648 37.037 0.00 0.00 38.01 1.85
6518 7430 8.519799 TGTAATTGTCCCTTTTAGATTCCATC 57.480 34.615 0.00 0.00 0.00 3.51
6554 7466 3.915437 AAGGTTTTACCAACATCTGCG 57.085 42.857 0.00 0.00 41.95 5.18
6652 7569 7.721842 TCATAAAAACTCATGGTCAAGGTTACA 59.278 33.333 0.00 0.00 0.00 2.41
6711 7628 6.399639 TCCTTCCTTTTGTAAAATCGCTTT 57.600 33.333 0.00 0.00 0.00 3.51
6718 7635 6.256757 CCTTTTGTAAAATCGCTTTGTTTCCA 59.743 34.615 0.00 0.00 0.00 3.53
6762 7679 1.405526 CCGTTCGTCCACTGGATTGAT 60.406 52.381 0.00 0.00 32.73 2.57
6850 7768 3.308401 TGCATGAAGCCTAGATCTACCA 58.692 45.455 0.00 0.00 44.83 3.25
6877 7795 9.090692 CTTTTGTCCATTTGATATCATTTCACC 57.909 33.333 6.17 0.00 0.00 4.02
7006 7924 1.284198 AGTGCTCTGATGGGATTGCTT 59.716 47.619 0.00 0.00 0.00 3.91
7082 8000 6.006449 ACCATGAACTTCTTAGCTTGACAAT 58.994 36.000 0.00 0.00 0.00 2.71
7123 8041 9.274206 CATGAGATGACATCTTCATAGTTCATT 57.726 33.333 18.89 0.00 45.67 2.57
7151 8069 3.249687 CTGTGGGGCAGGTAAAGAC 57.750 57.895 0.00 0.00 41.42 3.01
7153 8071 0.400213 TGTGGGGCAGGTAAAGACTG 59.600 55.000 0.00 0.00 38.95 3.51
7237 8156 2.301296 ACCTCTCCAGACATGTCACTTG 59.699 50.000 27.02 16.31 0.00 3.16
7354 8273 4.695396 TGCATCAAAACTCTTGCACAAAT 58.305 34.783 0.00 0.00 39.98 2.32
7365 8284 2.064434 TGCACAAATTGACTGTCCCA 57.936 45.000 5.17 0.00 0.00 4.37
7380 8299 1.413077 GTCCCAGGTCATACTGTAGCC 59.587 57.143 0.00 0.00 36.75 3.93
7411 8330 5.466127 TTTGAATGCTAGTATTTCCCCCT 57.534 39.130 7.53 0.00 0.00 4.79
7419 8338 3.825908 AGTATTTCCCCCTCTTTTGCA 57.174 42.857 0.00 0.00 0.00 4.08
7584 8503 7.175293 TGTTGGTTTTATCTACCGCTTGTTAAT 59.825 33.333 0.00 0.00 38.55 1.40
7587 8506 6.471198 GGTTTTATCTACCGCTTGTTAATTGC 59.529 38.462 0.00 0.00 0.00 3.56
7588 8507 6.745159 TTTATCTACCGCTTGTTAATTGCA 57.255 33.333 0.00 0.00 0.00 4.08
7589 8508 4.616181 ATCTACCGCTTGTTAATTGCAC 57.384 40.909 0.00 0.00 0.00 4.57
7590 8509 3.670625 TCTACCGCTTGTTAATTGCACT 58.329 40.909 0.00 0.00 0.00 4.40
7591 8510 4.823157 TCTACCGCTTGTTAATTGCACTA 58.177 39.130 0.00 0.00 0.00 2.74
7592 8511 5.424757 TCTACCGCTTGTTAATTGCACTAT 58.575 37.500 0.00 0.00 0.00 2.12
7593 8512 4.355543 ACCGCTTGTTAATTGCACTATG 57.644 40.909 0.00 0.00 0.00 2.23
7594 8513 3.108144 CCGCTTGTTAATTGCACTATGC 58.892 45.455 0.00 0.00 45.29 3.14
7595 8514 3.181497 CCGCTTGTTAATTGCACTATGCT 60.181 43.478 2.02 0.00 45.31 3.79
7596 8515 4.414852 CGCTTGTTAATTGCACTATGCTT 58.585 39.130 2.02 0.00 45.31 3.91
7597 8516 5.448496 CCGCTTGTTAATTGCACTATGCTTA 60.448 40.000 2.02 0.00 45.31 3.09
7598 8517 5.678483 CGCTTGTTAATTGCACTATGCTTAG 59.322 40.000 5.13 5.13 45.31 2.18
7599 8518 6.456853 CGCTTGTTAATTGCACTATGCTTAGA 60.457 38.462 13.22 0.00 45.31 2.10
7600 8519 6.909357 GCTTGTTAATTGCACTATGCTTAGAG 59.091 38.462 13.22 6.66 45.31 2.43
7601 8520 7.414540 GCTTGTTAATTGCACTATGCTTAGAGT 60.415 37.037 13.22 0.00 45.31 3.24
7602 8521 7.539712 TGTTAATTGCACTATGCTTAGAGTC 57.460 36.000 13.22 3.41 45.31 3.36
7603 8522 6.538742 TGTTAATTGCACTATGCTTAGAGTCC 59.461 38.462 13.22 0.20 45.31 3.85
7604 8523 5.365021 AATTGCACTATGCTTAGAGTCCT 57.635 39.130 13.22 0.00 45.31 3.85
7605 8524 3.808466 TGCACTATGCTTAGAGTCCTG 57.192 47.619 13.22 2.36 45.31 3.86
7606 8525 3.099905 TGCACTATGCTTAGAGTCCTGT 58.900 45.455 13.22 0.00 45.31 4.00
7607 8526 3.515502 TGCACTATGCTTAGAGTCCTGTT 59.484 43.478 13.22 0.00 45.31 3.16
7608 8527 3.868077 GCACTATGCTTAGAGTCCTGTTG 59.132 47.826 13.22 0.42 40.96 3.33
7609 8528 4.437239 CACTATGCTTAGAGTCCTGTTGG 58.563 47.826 13.22 0.00 0.00 3.77
7610 8529 4.081420 CACTATGCTTAGAGTCCTGTTGGT 60.081 45.833 13.22 0.00 34.23 3.67
7611 8530 4.532521 ACTATGCTTAGAGTCCTGTTGGTT 59.467 41.667 13.22 0.00 34.23 3.67
7612 8531 3.857157 TGCTTAGAGTCCTGTTGGTTT 57.143 42.857 0.00 0.00 34.23 3.27
7613 8532 4.164843 TGCTTAGAGTCCTGTTGGTTTT 57.835 40.909 0.00 0.00 34.23 2.43
7614 8533 5.298989 TGCTTAGAGTCCTGTTGGTTTTA 57.701 39.130 0.00 0.00 34.23 1.52
7615 8534 5.876357 TGCTTAGAGTCCTGTTGGTTTTAT 58.124 37.500 0.00 0.00 34.23 1.40
7616 8535 5.938125 TGCTTAGAGTCCTGTTGGTTTTATC 59.062 40.000 0.00 0.00 34.23 1.75
7617 8536 6.174049 GCTTAGAGTCCTGTTGGTTTTATCT 58.826 40.000 0.00 0.00 34.23 1.98
7618 8537 7.038587 TGCTTAGAGTCCTGTTGGTTTTATCTA 60.039 37.037 0.00 0.00 34.23 1.98
7619 8538 7.278203 GCTTAGAGTCCTGTTGGTTTTATCTAC 59.722 40.741 0.00 0.00 34.23 2.59
7620 8539 6.681729 AGAGTCCTGTTGGTTTTATCTACA 57.318 37.500 0.00 0.00 34.23 2.74
7695 8615 3.193267 TGCTGATTCCCTTGTATGTTTGC 59.807 43.478 0.00 0.00 0.00 3.68
7710 8630 3.702048 TGCTGACCGGGTAGCACC 61.702 66.667 25.29 4.14 44.36 5.01
7978 8898 0.386113 TTGCTGGCCAAAACGGTAAC 59.614 50.000 7.01 0.00 36.97 2.50
8017 8946 3.450904 AGGTTGATACTTCACAGGGCTA 58.549 45.455 0.00 0.00 0.00 3.93
8189 9152 2.202570 CGGTACCACGGAGCTTCG 60.203 66.667 14.32 14.32 0.00 3.79
8222 9185 2.947652 GGGTTTTAAGATCGGTTAGGCC 59.052 50.000 0.00 0.00 0.00 5.19
8279 9242 7.192148 ACGCAGTACATGTAAAAACATTACA 57.808 32.000 7.25 3.76 41.94 2.41
8306 9269 0.929615 TTCGGACGAACACGGTTTTC 59.070 50.000 2.62 0.00 0.00 2.29
8393 9357 2.716424 TCATCCCCACCTTCAGAGTTTT 59.284 45.455 0.00 0.00 0.00 2.43
8397 9361 3.031013 CCCCACCTTCAGAGTTTTTGTT 58.969 45.455 0.00 0.00 0.00 2.83
8398 9362 3.068165 CCCCACCTTCAGAGTTTTTGTTC 59.932 47.826 0.00 0.00 0.00 3.18
8399 9363 3.699038 CCCACCTTCAGAGTTTTTGTTCA 59.301 43.478 0.00 0.00 0.00 3.18
8400 9364 4.159506 CCCACCTTCAGAGTTTTTGTTCAA 59.840 41.667 0.00 0.00 0.00 2.69
8401 9365 5.163416 CCCACCTTCAGAGTTTTTGTTCAAT 60.163 40.000 0.00 0.00 0.00 2.57
8402 9366 5.979517 CCACCTTCAGAGTTTTTGTTCAATC 59.020 40.000 0.00 0.00 0.00 2.67
8427 9391 5.416639 TCAATCTGAATCCTGACAAACCATG 59.583 40.000 0.00 0.00 0.00 3.66
8477 9441 4.932799 CCACATCACCGTATAAGTTTGACA 59.067 41.667 0.00 0.00 0.00 3.58
8511 9476 2.076100 TCATTTGCGCCTAGAAGTGTG 58.924 47.619 4.18 0.00 0.00 3.82
8551 9516 0.967887 GCAGGGGAAGGGAAGCTTTC 60.968 60.000 0.00 0.00 0.00 2.62
8570 9535 2.243810 TCCCCACTTTACACCAAATGC 58.756 47.619 0.00 0.00 0.00 3.56
8884 9850 4.754114 GTCCTCATCAGGTAGCATCAATTC 59.246 45.833 0.00 0.00 41.28 2.17
8885 9851 4.657504 TCCTCATCAGGTAGCATCAATTCT 59.342 41.667 0.00 0.00 41.28 2.40
8886 9852 5.840693 TCCTCATCAGGTAGCATCAATTCTA 59.159 40.000 0.00 0.00 41.28 2.10
8915 9881 0.252284 ACCGACAGGGATCAGAACCT 60.252 55.000 0.00 0.00 43.47 3.50
8994 9960 4.988486 GCGTGCCAGCAACTGCAC 62.988 66.667 4.22 4.61 45.16 4.57
8995 9961 3.282157 CGTGCCAGCAACTGCACT 61.282 61.111 12.18 0.00 45.16 4.40
8996 9962 2.333938 GTGCCAGCAACTGCACTG 59.666 61.111 4.22 0.00 45.16 3.66
8997 9963 3.598715 TGCCAGCAACTGCACTGC 61.599 61.111 7.78 7.78 45.16 4.40
8998 9964 3.598715 GCCAGCAACTGCACTGCA 61.599 61.111 16.32 3.11 45.16 4.41
9021 9987 6.402442 GCATGAACACTTTCAAATTTATGGGC 60.402 38.462 0.00 0.00 45.01 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.604875 ACCAACGACATTACCGAAGAT 57.395 42.857 0.00 0.00 0.00 2.40
8 9 3.181527 GCGGAAGTAACCAACGACATTAC 60.182 47.826 0.00 0.00 0.00 1.89
32 33 4.345859 TTTTGTAGACTCGGACATGGTT 57.654 40.909 0.00 0.00 0.00 3.67
126 127 6.339730 GGGATTTGTTCACATGCATGATTTA 58.660 36.000 32.75 11.74 0.00 1.40
180 182 5.066505 GGAAGTCATGCCGATGATTTAGTTT 59.933 40.000 0.00 0.00 40.78 2.66
198 200 4.945246 TCGTATGATTTGGCTAGGAAGTC 58.055 43.478 0.00 0.00 0.00 3.01
227 236 1.539827 GGTTGTAGGTCACCAATGCAC 59.460 52.381 0.00 0.00 0.00 4.57
252 261 5.508200 TTTTAGAACGGATTTGTTGCTGT 57.492 34.783 0.00 0.00 30.75 4.40
323 332 1.368019 CAAGTCGCCGCGCAATATG 60.368 57.895 8.75 0.00 0.00 1.78
324 333 3.014036 CAAGTCGCCGCGCAATAT 58.986 55.556 8.75 0.00 0.00 1.28
340 349 2.034532 TGTAGGGGTCGACGAGCA 59.965 61.111 26.49 5.44 0.00 4.26
346 355 2.125326 CCATCGCTGTAGGGGTCGA 61.125 63.158 0.00 0.00 35.34 4.20
422 912 2.631418 TCTATTAGCATAGCGACCGC 57.369 50.000 6.25 6.25 42.33 5.68
451 941 2.765699 GGAGATTTTGCATTTAGGCCCA 59.234 45.455 0.00 0.00 0.00 5.36
474 964 4.899239 CAGATGGACCCGAGCGGC 62.899 72.222 2.79 0.00 33.26 6.53
537 1027 3.055675 TGGACGGTTGACTCGGATTAATT 60.056 43.478 0.00 0.00 0.00 1.40
568 1058 1.404315 GCAGAGTACAAAGGACCGGAG 60.404 57.143 9.46 0.00 0.00 4.63
569 1059 0.606604 GCAGAGTACAAAGGACCGGA 59.393 55.000 9.46 0.00 0.00 5.14
570 1060 0.320374 TGCAGAGTACAAAGGACCGG 59.680 55.000 0.00 0.00 0.00 5.28
571 1061 2.386661 ATGCAGAGTACAAAGGACCG 57.613 50.000 0.00 0.00 0.00 4.79
572 1062 6.817184 TCTTATATGCAGAGTACAAAGGACC 58.183 40.000 0.00 0.00 0.00 4.46
573 1063 8.894768 ATTCTTATATGCAGAGTACAAAGGAC 57.105 34.615 0.00 0.00 0.00 3.85
574 1064 9.330063 CAATTCTTATATGCAGAGTACAAAGGA 57.670 33.333 0.00 0.00 0.00 3.36
575 1065 9.113838 ACAATTCTTATATGCAGAGTACAAAGG 57.886 33.333 0.00 0.00 0.00 3.11
577 1067 9.109393 GGACAATTCTTATATGCAGAGTACAAA 57.891 33.333 0.00 0.00 0.00 2.83
578 1068 7.438160 CGGACAATTCTTATATGCAGAGTACAA 59.562 37.037 0.00 0.00 0.00 2.41
579 1069 6.923508 CGGACAATTCTTATATGCAGAGTACA 59.076 38.462 0.00 0.00 0.00 2.90
580 1070 7.145985 TCGGACAATTCTTATATGCAGAGTAC 58.854 38.462 0.00 0.00 0.00 2.73
581 1071 7.284919 TCGGACAATTCTTATATGCAGAGTA 57.715 36.000 0.00 0.00 0.00 2.59
582 1072 6.161855 TCGGACAATTCTTATATGCAGAGT 57.838 37.500 0.00 0.00 0.00 3.24
583 1073 6.703607 ACTTCGGACAATTCTTATATGCAGAG 59.296 38.462 0.00 0.00 0.00 3.35
584 1074 6.582636 ACTTCGGACAATTCTTATATGCAGA 58.417 36.000 0.00 0.00 0.00 4.26
585 1075 6.479990 TGACTTCGGACAATTCTTATATGCAG 59.520 38.462 0.00 0.00 0.00 4.41
586 1076 6.345298 TGACTTCGGACAATTCTTATATGCA 58.655 36.000 0.00 0.00 0.00 3.96
587 1077 6.844696 TGACTTCGGACAATTCTTATATGC 57.155 37.500 0.00 0.00 0.00 3.14
588 1078 8.883731 AGTTTGACTTCGGACAATTCTTATATG 58.116 33.333 0.00 0.00 30.77 1.78
589 1079 9.449719 AAGTTTGACTTCGGACAATTCTTATAT 57.550 29.630 0.00 0.00 31.77 0.86
590 1080 8.842358 AAGTTTGACTTCGGACAATTCTTATA 57.158 30.769 0.00 0.00 31.77 0.98
591 1081 7.745620 AAGTTTGACTTCGGACAATTCTTAT 57.254 32.000 0.00 0.00 31.77 1.73
592 1082 7.186021 GAAGTTTGACTTCGGACAATTCTTA 57.814 36.000 5.20 0.00 44.22 2.10
593 1083 6.061231 GAAGTTTGACTTCGGACAATTCTT 57.939 37.500 5.20 0.00 44.22 2.52
594 1084 5.674933 GAAGTTTGACTTCGGACAATTCT 57.325 39.130 5.20 0.00 44.22 2.40
746 1236 9.997482 GCCTCGTAAAATTTGATCAACTTTATA 57.003 29.630 20.24 13.26 0.00 0.98
747 1237 8.739972 AGCCTCGTAAAATTTGATCAACTTTAT 58.260 29.630 20.24 14.00 0.00 1.40
748 1238 8.106247 AGCCTCGTAAAATTTGATCAACTTTA 57.894 30.769 20.24 16.87 0.00 1.85
749 1239 6.981722 AGCCTCGTAAAATTTGATCAACTTT 58.018 32.000 15.78 15.78 0.00 2.66
750 1240 6.575162 AGCCTCGTAAAATTTGATCAACTT 57.425 33.333 7.89 6.42 0.00 2.66
751 1241 6.206634 TCAAGCCTCGTAAAATTTGATCAACT 59.793 34.615 7.89 0.00 0.00 3.16
752 1242 6.305638 GTCAAGCCTCGTAAAATTTGATCAAC 59.694 38.462 7.89 0.00 0.00 3.18
753 1243 6.206634 AGTCAAGCCTCGTAAAATTTGATCAA 59.793 34.615 3.38 3.38 0.00 2.57
754 1244 5.705441 AGTCAAGCCTCGTAAAATTTGATCA 59.295 36.000 0.00 0.00 0.00 2.92
755 1245 6.183309 AGTCAAGCCTCGTAAAATTTGATC 57.817 37.500 0.00 0.00 0.00 2.92
756 1246 6.575162 AAGTCAAGCCTCGTAAAATTTGAT 57.425 33.333 0.00 0.00 0.00 2.57
757 1247 6.385649 AAAGTCAAGCCTCGTAAAATTTGA 57.614 33.333 0.00 0.00 0.00 2.69
758 1248 7.534239 GTCTAAAGTCAAGCCTCGTAAAATTTG 59.466 37.037 0.00 0.00 0.00 2.32
759 1249 7.227910 TGTCTAAAGTCAAGCCTCGTAAAATTT 59.772 33.333 0.00 0.00 0.00 1.82
760 1250 6.708949 TGTCTAAAGTCAAGCCTCGTAAAATT 59.291 34.615 0.00 0.00 0.00 1.82
761 1251 6.228258 TGTCTAAAGTCAAGCCTCGTAAAAT 58.772 36.000 0.00 0.00 0.00 1.82
762 1252 5.603596 TGTCTAAAGTCAAGCCTCGTAAAA 58.396 37.500 0.00 0.00 0.00 1.52
763 1253 5.204409 TGTCTAAAGTCAAGCCTCGTAAA 57.796 39.130 0.00 0.00 0.00 2.01
764 1254 4.859304 TGTCTAAAGTCAAGCCTCGTAA 57.141 40.909 0.00 0.00 0.00 3.18
765 1255 4.859304 TTGTCTAAAGTCAAGCCTCGTA 57.141 40.909 0.00 0.00 0.00 3.43
766 1256 3.746045 TTGTCTAAAGTCAAGCCTCGT 57.254 42.857 0.00 0.00 0.00 4.18
767 1257 5.613358 AATTTGTCTAAAGTCAAGCCTCG 57.387 39.130 0.00 0.00 0.00 4.63
787 1277 8.909923 CGGTCCTTTTTACTTCCCATATAAAAT 58.090 33.333 0.00 0.00 30.18 1.82
788 1278 7.339976 CCGGTCCTTTTTACTTCCCATATAAAA 59.660 37.037 0.00 0.00 0.00 1.52
789 1279 6.829811 CCGGTCCTTTTTACTTCCCATATAAA 59.170 38.462 0.00 0.00 0.00 1.40
790 1280 6.158344 TCCGGTCCTTTTTACTTCCCATATAA 59.842 38.462 0.00 0.00 0.00 0.98
791 1281 5.666718 TCCGGTCCTTTTTACTTCCCATATA 59.333 40.000 0.00 0.00 0.00 0.86
792 1282 4.475747 TCCGGTCCTTTTTACTTCCCATAT 59.524 41.667 0.00 0.00 0.00 1.78
793 1283 3.845398 TCCGGTCCTTTTTACTTCCCATA 59.155 43.478 0.00 0.00 0.00 2.74
794 1284 2.645797 TCCGGTCCTTTTTACTTCCCAT 59.354 45.455 0.00 0.00 0.00 4.00
795 1285 2.039348 CTCCGGTCCTTTTTACTTCCCA 59.961 50.000 0.00 0.00 0.00 4.37
796 1286 2.617276 CCTCCGGTCCTTTTTACTTCCC 60.617 54.545 0.00 0.00 0.00 3.97
797 1287 2.617276 CCCTCCGGTCCTTTTTACTTCC 60.617 54.545 0.00 0.00 0.00 3.46
798 1288 2.303890 TCCCTCCGGTCCTTTTTACTTC 59.696 50.000 0.00 0.00 0.00 3.01
799 1289 2.305052 CTCCCTCCGGTCCTTTTTACTT 59.695 50.000 0.00 0.00 0.00 2.24
800 1290 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
801 1291 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
802 1292 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
803 1293 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
804 1294 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
805 1295 0.115745 TGTACTCCCTCCGGTCCTTT 59.884 55.000 0.00 0.00 0.00 3.11
806 1296 0.324460 CTGTACTCCCTCCGGTCCTT 60.324 60.000 0.00 0.00 0.00 3.36
807 1297 1.306970 CTGTACTCCCTCCGGTCCT 59.693 63.158 0.00 0.00 0.00 3.85
808 1298 2.424733 GCTGTACTCCCTCCGGTCC 61.425 68.421 0.00 0.00 0.00 4.46
809 1299 2.772691 CGCTGTACTCCCTCCGGTC 61.773 68.421 0.00 0.00 0.00 4.79
810 1300 2.754658 CGCTGTACTCCCTCCGGT 60.755 66.667 0.00 0.00 0.00 5.28
811 1301 2.754658 ACGCTGTACTCCCTCCGG 60.755 66.667 0.00 0.00 0.00 5.14
812 1302 2.490217 CACGCTGTACTCCCTCCG 59.510 66.667 0.00 0.00 0.00 4.63
813 1303 2.167398 TTGCACGCTGTACTCCCTCC 62.167 60.000 0.00 0.00 0.00 4.30
814 1304 0.320421 TTTGCACGCTGTACTCCCTC 60.320 55.000 0.00 0.00 0.00 4.30
815 1305 0.320771 CTTTGCACGCTGTACTCCCT 60.321 55.000 0.00 0.00 0.00 4.20
816 1306 0.602905 ACTTTGCACGCTGTACTCCC 60.603 55.000 0.00 0.00 0.00 4.30
817 1307 1.226746 AACTTTGCACGCTGTACTCC 58.773 50.000 0.00 0.00 0.00 3.85
931 1421 8.528044 AGAGATAGAACGAGAGGATAGTTTTT 57.472 34.615 0.00 0.00 0.00 1.94
947 1437 3.245658 CGGGGATAGGGGAAGAGATAGAA 60.246 52.174 0.00 0.00 0.00 2.10
969 1459 0.672711 CGGAGGTTTCGGGGTTTCTC 60.673 60.000 0.00 0.00 0.00 2.87
1174 1665 2.507102 CTGAGCAACGACGGCGAT 60.507 61.111 22.49 0.16 41.64 4.58
1185 1676 2.461300 ACATAGTAGGGAGCTGAGCA 57.539 50.000 7.39 0.00 0.00 4.26
1283 1774 8.992073 GTGCTAAATTCCAAATGTTTCAAGATT 58.008 29.630 0.00 0.00 0.00 2.40
1305 1796 7.464830 CGCAAAAGTAGTTATACTATGTGCT 57.535 36.000 12.28 0.00 41.54 4.40
1546 2042 1.817099 CATCTTCCGTGCCTCCAGC 60.817 63.158 0.00 0.00 44.14 4.85
1638 2134 1.810151 TGTTCGGGCAGAAATGTAAGC 59.190 47.619 0.54 0.00 41.10 3.09
1680 2176 6.250527 CACACTTAAGTTGCTTACACAAACAC 59.749 38.462 5.07 0.00 0.00 3.32
1688 2184 4.561735 TTGCCACACTTAAGTTGCTTAC 57.438 40.909 5.07 0.00 0.00 2.34
1693 2189 5.751243 ACTACTTTGCCACACTTAAGTTG 57.249 39.130 5.07 7.94 33.28 3.16
1809 2305 2.094854 TCTTCGAAGTTCTAACGCCTCC 60.095 50.000 23.85 0.00 0.00 4.30
1878 2374 9.010029 GGGAGTACAAGATAAACAAGAAATCAA 57.990 33.333 0.00 0.00 0.00 2.57
1911 2407 9.166173 CATCAGTTTGATAGTCAACTAATTCCA 57.834 33.333 0.00 0.00 35.89 3.53
1925 2421 7.560262 AGTGCTACTAGGTACATCAGTTTGATA 59.440 37.037 0.00 0.00 34.28 2.15
1933 2429 6.791867 ATTTCAGTGCTACTAGGTACATCA 57.208 37.500 0.00 0.00 0.00 3.07
1957 2453 5.069119 TGCTCAAACGGATGTATCTAGACAT 59.931 40.000 0.00 0.00 42.82 3.06
1981 2477 3.449737 TCCTCCGTTCGGAATTAGTTGAT 59.550 43.478 14.79 0.00 33.41 2.57
1995 2491 6.170846 TCTTAGTTTCTTTCTTCCTCCGTT 57.829 37.500 0.00 0.00 0.00 4.44
2131 2628 1.144503 CCTAAGCATGCAAGGAGGGAT 59.855 52.381 26.91 0.00 31.64 3.85
2333 2852 4.523943 TCCACTAAAACAGCAATTGAGCAT 59.476 37.500 10.34 0.00 36.85 3.79
2437 2956 6.897706 TGCATCAAAATAGGCATAGCAATA 57.102 33.333 0.00 0.00 0.00 1.90
2460 2979 9.646427 TGAAAGCAACAAATTTGTAGTTTAGTT 57.354 25.926 23.53 11.50 41.31 2.24
2498 3017 3.661764 CGCATAAGTTTTGCCGCG 58.338 55.556 11.98 0.00 36.75 6.46
2522 3041 0.734889 CCGTGAGCAATGTGATTCCC 59.265 55.000 0.00 0.00 0.00 3.97
2663 3182 7.121315 AGCATATTTTGAAGGAACTAACCTGAC 59.879 37.037 0.00 0.00 38.49 3.51
2672 3191 9.822185 AATAATGGAAGCATATTTTGAAGGAAC 57.178 29.630 0.00 0.00 0.00 3.62
2721 3240 8.091449 AGTACAGAGAAGAATTTGAGTACCTTG 58.909 37.037 0.00 0.00 33.06 3.61
2790 3310 4.583073 CCCATTACTTAAGCCCCATAACAC 59.417 45.833 1.29 0.00 0.00 3.32
2938 3458 3.207778 TCTTTGTGTTAACCCAAGACGG 58.792 45.455 2.48 0.00 33.12 4.79
3026 3547 6.809196 AGCGTTTAGATCACTAAAGTCTTCTG 59.191 38.462 0.00 0.00 45.42 3.02
3028 3549 7.030768 AGAGCGTTTAGATCACTAAAGTCTTC 58.969 38.462 0.00 0.00 45.42 2.87
3082 3603 8.561212 ACATTACTATGTAAAACGTTGCAGAAA 58.439 29.630 0.00 0.00 43.12 2.52
3176 3697 4.381292 GCATGACTACGGTTACCTGTTACT 60.381 45.833 0.00 0.00 0.00 2.24
3186 3707 6.380095 TTTGTTAAAAGCATGACTACGGTT 57.620 33.333 0.00 0.00 0.00 4.44
3269 3791 1.274447 ACTGTGGTAACCGTAAGCCTC 59.726 52.381 0.00 0.00 0.00 4.70
3277 3799 4.817517 AGAGTGATTTACTGTGGTAACCG 58.182 43.478 0.00 0.00 40.53 4.44
3333 3855 3.007635 CCAATAGAGTGACCCGTTTTCC 58.992 50.000 0.00 0.00 0.00 3.13
3334 3856 3.007635 CCCAATAGAGTGACCCGTTTTC 58.992 50.000 0.00 0.00 0.00 2.29
3335 3857 2.640826 TCCCAATAGAGTGACCCGTTTT 59.359 45.455 0.00 0.00 0.00 2.43
3336 3858 2.262637 TCCCAATAGAGTGACCCGTTT 58.737 47.619 0.00 0.00 0.00 3.60
3337 3859 1.946984 TCCCAATAGAGTGACCCGTT 58.053 50.000 0.00 0.00 0.00 4.44
3338 3860 1.946984 TTCCCAATAGAGTGACCCGT 58.053 50.000 0.00 0.00 0.00 5.28
3339 3861 3.007635 GTTTTCCCAATAGAGTGACCCG 58.992 50.000 0.00 0.00 0.00 5.28
3340 3862 3.007635 CGTTTTCCCAATAGAGTGACCC 58.992 50.000 0.00 0.00 0.00 4.46
3386 3908 3.902881 TTGCAGTGGAACAAACCAAAT 57.097 38.095 0.00 0.00 44.16 2.32
3421 3944 7.511268 TGTAAACCAACACTATACAAGAAGGT 58.489 34.615 0.00 0.00 0.00 3.50
3460 3983 1.291272 GGACGGAGCGTTGGTAGTT 59.709 57.895 0.00 0.00 41.37 2.24
3461 3984 1.466025 TTGGACGGAGCGTTGGTAGT 61.466 55.000 0.00 0.00 41.37 2.73
3514 4037 8.647143 AAAAACAATTGTGGATAGTGAGTTTG 57.353 30.769 12.82 0.00 0.00 2.93
3516 4039 7.287696 AGGAAAAACAATTGTGGATAGTGAGTT 59.712 33.333 12.82 0.00 0.00 3.01
3518 4041 7.040478 TGAGGAAAAACAATTGTGGATAGTGAG 60.040 37.037 12.82 0.00 0.00 3.51
3519 4042 6.775142 TGAGGAAAAACAATTGTGGATAGTGA 59.225 34.615 12.82 0.00 0.00 3.41
3526 4049 5.693104 CACATCTGAGGAAAAACAATTGTGG 59.307 40.000 12.82 0.00 31.46 4.17
3572 4095 9.699410 ACATTCATCAGGGAAATGAAGTAAATA 57.301 29.630 5.00 0.00 44.07 1.40
3621 4144 1.002888 CAGATTCAGGTCAGCAGGTGT 59.997 52.381 0.00 0.00 0.00 4.16
3636 4159 6.311445 CAGTTCGTGCTCTTATGTTACAGATT 59.689 38.462 0.00 0.00 0.00 2.40
3718 4614 8.316946 TCACATATCAACAATTTCAGAGACTCT 58.683 33.333 0.00 0.00 0.00 3.24
3798 4694 0.464554 GCCAGGAGCCCAGTATCAAC 60.465 60.000 0.00 0.00 34.35 3.18
3803 4699 2.589610 ATCGAGCCAGGAGCCCAGTA 62.590 60.000 0.00 0.00 45.47 2.74
3889 4785 7.275183 TCACTTTTCAAACATCTGAGAGAAGA 58.725 34.615 0.00 0.00 0.00 2.87
3967 4863 8.206189 CCAACCATAAAAATCCTATTCATTGCT 58.794 33.333 0.00 0.00 0.00 3.91
4017 4913 0.105778 TGCACACATGTTGTCCTCGA 59.894 50.000 0.00 0.00 35.67 4.04
4090 4986 2.106511 AGGCTGCTTTTAGGACTTCACA 59.893 45.455 0.00 0.00 0.00 3.58
4091 4987 2.784347 AGGCTGCTTTTAGGACTTCAC 58.216 47.619 0.00 0.00 0.00 3.18
4151 5047 2.140839 TGGCCACATTGACATATGCA 57.859 45.000 0.00 0.00 0.00 3.96
4292 5188 3.071874 TGCGAATCCTGAACCTGAATT 57.928 42.857 0.00 0.00 0.00 2.17
4647 5553 5.704888 CATAAAGGGTCAACAACGCATTAA 58.295 37.500 0.00 0.00 43.06 1.40
4764 5670 1.269012 CATGTGGCCCCAAAGTGAAT 58.731 50.000 0.00 0.00 0.00 2.57
4817 5723 1.604604 CGGGCTTTCTGGAGAAAACA 58.395 50.000 3.52 0.00 42.72 2.83
4892 5799 1.302832 GAGCAGTCCACCAGTTGGG 60.303 63.158 2.79 0.00 46.92 4.12
4930 5837 0.441533 CTTGCTGCAGCTTCTACACG 59.558 55.000 36.61 11.66 42.66 4.49
4947 5854 3.488721 GCGATGTGTCCTACGTGATACTT 60.489 47.826 0.00 0.00 0.00 2.24
4952 5859 0.963856 AGGCGATGTGTCCTACGTGA 60.964 55.000 0.00 0.00 0.00 4.35
5010 5917 1.175983 GGATCCGATGAGTCGCCTCT 61.176 60.000 0.00 0.00 46.32 3.69
5077 5984 1.298157 GCATGTAGCTGGTGCACGAA 61.298 55.000 11.45 0.13 42.74 3.85
5100 6007 3.449227 CAGCTACTCGACCCGGCA 61.449 66.667 0.00 0.00 0.00 5.69
5268 6175 4.465632 TTTGCTCAGATCGGTAGCTAAA 57.534 40.909 15.09 11.54 37.16 1.85
5271 6178 3.550437 AATTTGCTCAGATCGGTAGCT 57.450 42.857 15.09 0.00 37.16 3.32
5299 6206 7.710907 CCGATTCCAACAGATTTATCTAGAACA 59.289 37.037 0.00 0.00 34.85 3.18
5317 6224 1.682849 CCACTGAACCCCGATTCCA 59.317 57.895 0.00 0.00 0.00 3.53
5346 6253 4.269183 TGTGAATCATAGTTGCCGGATTT 58.731 39.130 5.05 0.00 30.60 2.17
5481 6388 6.072112 TGTTTTCAGTTATTCAGTGAAGGC 57.928 37.500 11.91 4.11 44.22 4.35
5644 6551 7.327214 GGTAAAAATGCAATTGTCCCAATCTA 58.673 34.615 7.40 0.00 36.10 1.98
5645 6552 6.172630 GGTAAAAATGCAATTGTCCCAATCT 58.827 36.000 7.40 0.00 36.10 2.40
5646 6553 5.353956 GGGTAAAAATGCAATTGTCCCAATC 59.646 40.000 7.40 0.00 36.10 2.67
6143 7054 4.085357 TGTAGGTGATGTTTGCTGAACT 57.915 40.909 5.39 0.00 39.08 3.01
6518 7430 7.439955 GGTAAAACCTTAAAATGTTTGACTGGG 59.560 37.037 9.56 0.00 36.48 4.45
6554 7466 8.557029 CGGACCTAATTCTATTAATTTGGTGTC 58.443 37.037 17.32 10.47 42.72 3.67
6652 7569 6.118170 CCTCCTACATTGACATGTCTCAAAT 58.882 40.000 25.55 14.56 43.06 2.32
6718 7635 6.489022 GGTGTTGGTAAGTCCTTTATCAAGTT 59.511 38.462 0.00 0.00 41.73 2.66
6779 7697 5.366829 AAACAATACCTGCCGTAAAAGAC 57.633 39.130 0.00 0.00 0.00 3.01
6850 7768 9.643693 GTGAAATGATATCAAATGGACAAAAGT 57.356 29.630 9.99 0.00 0.00 2.66
6877 7795 6.707161 ACATGGTCCTGTTCAAATCATTTTTG 59.293 34.615 0.00 0.00 0.00 2.44
7046 7964 4.993705 AGTTCATGGTGGTCTTAAGGAA 57.006 40.909 1.85 0.00 0.00 3.36
7082 8000 0.252761 TCATGAATGCCGAGCTGGAA 59.747 50.000 0.00 0.00 42.00 3.53
7123 8041 3.080641 CCCCACAGTCCTGCATGA 58.919 61.111 0.00 0.00 0.00 3.07
7237 8156 2.257894 CTTCTCAGACACGCAGATCAC 58.742 52.381 0.00 0.00 0.00 3.06
7391 8310 4.307259 AGAGGGGGAAATACTAGCATTCA 58.693 43.478 0.00 0.00 0.00 2.57
7587 8506 4.081420 ACCAACAGGACTCTAAGCATAGTG 60.081 45.833 0.00 0.00 0.00 2.74
7588 8507 4.097418 ACCAACAGGACTCTAAGCATAGT 58.903 43.478 0.00 0.00 0.00 2.12
7589 8508 4.744795 ACCAACAGGACTCTAAGCATAG 57.255 45.455 0.00 0.00 0.00 2.23
7590 8509 5.499004 AAACCAACAGGACTCTAAGCATA 57.501 39.130 0.00 0.00 0.00 3.14
7591 8510 4.373156 AAACCAACAGGACTCTAAGCAT 57.627 40.909 0.00 0.00 0.00 3.79
7592 8511 3.857157 AAACCAACAGGACTCTAAGCA 57.143 42.857 0.00 0.00 0.00 3.91
7593 8512 6.174049 AGATAAAACCAACAGGACTCTAAGC 58.826 40.000 0.00 0.00 0.00 3.09
7594 8513 8.311836 TGTAGATAAAACCAACAGGACTCTAAG 58.688 37.037 0.00 0.00 0.00 2.18
7595 8514 8.197592 TGTAGATAAAACCAACAGGACTCTAA 57.802 34.615 0.00 0.00 0.00 2.10
7596 8515 7.578955 GCTGTAGATAAAACCAACAGGACTCTA 60.579 40.741 0.00 0.00 38.36 2.43
7597 8516 6.681729 TGTAGATAAAACCAACAGGACTCT 57.318 37.500 0.00 0.00 0.00 3.24
7598 8517 5.351740 GCTGTAGATAAAACCAACAGGACTC 59.648 44.000 0.00 0.00 38.36 3.36
7599 8518 5.013183 AGCTGTAGATAAAACCAACAGGACT 59.987 40.000 0.00 0.00 38.36 3.85
7600 8519 5.246307 AGCTGTAGATAAAACCAACAGGAC 58.754 41.667 0.00 0.00 38.36 3.85
7601 8520 5.499004 AGCTGTAGATAAAACCAACAGGA 57.501 39.130 0.00 0.00 38.36 3.86
7602 8521 5.473504 ACAAGCTGTAGATAAAACCAACAGG 59.526 40.000 0.00 0.00 38.36 4.00
7603 8522 6.560253 ACAAGCTGTAGATAAAACCAACAG 57.440 37.500 0.00 0.00 40.38 3.16
7604 8523 6.952773 AACAAGCTGTAGATAAAACCAACA 57.047 33.333 0.00 0.00 0.00 3.33
7605 8524 8.565416 ACTTAACAAGCTGTAGATAAAACCAAC 58.435 33.333 0.00 0.00 0.00 3.77
7606 8525 8.564574 CACTTAACAAGCTGTAGATAAAACCAA 58.435 33.333 0.00 0.00 0.00 3.67
7607 8526 7.308348 GCACTTAACAAGCTGTAGATAAAACCA 60.308 37.037 0.00 0.00 0.00 3.67
7608 8527 7.021790 GCACTTAACAAGCTGTAGATAAAACC 58.978 38.462 0.00 0.00 0.00 3.27
7609 8528 7.534239 GTGCACTTAACAAGCTGTAGATAAAAC 59.466 37.037 10.32 0.00 0.00 2.43
7610 8529 7.444183 AGTGCACTTAACAAGCTGTAGATAAAA 59.556 33.333 15.25 0.00 0.00 1.52
7611 8530 6.934645 AGTGCACTTAACAAGCTGTAGATAAA 59.065 34.615 15.25 0.00 0.00 1.40
7612 8531 6.464222 AGTGCACTTAACAAGCTGTAGATAA 58.536 36.000 15.25 0.00 0.00 1.75
7613 8532 6.037786 AGTGCACTTAACAAGCTGTAGATA 57.962 37.500 15.25 0.00 0.00 1.98
7614 8533 4.899502 AGTGCACTTAACAAGCTGTAGAT 58.100 39.130 15.25 0.00 0.00 1.98
7615 8534 4.336889 AGTGCACTTAACAAGCTGTAGA 57.663 40.909 15.25 0.00 0.00 2.59
7616 8535 5.446473 GCATAGTGCACTTAACAAGCTGTAG 60.446 44.000 27.06 1.58 44.26 2.74
7617 8536 4.391830 GCATAGTGCACTTAACAAGCTGTA 59.608 41.667 27.06 1.76 44.26 2.74
7618 8537 3.189287 GCATAGTGCACTTAACAAGCTGT 59.811 43.478 27.06 0.00 44.26 4.40
7619 8538 3.751621 GCATAGTGCACTTAACAAGCTG 58.248 45.455 27.06 10.57 44.26 4.24
7710 8630 1.269166 GCGTACACAGATCAGGAACG 58.731 55.000 0.00 0.28 0.00 3.95
7978 8898 2.097142 ACCTCGACGAAGAATTAGACCG 59.903 50.000 0.00 0.00 0.00 4.79
8175 9104 2.372264 ACTTATCGAAGCTCCGTGGTA 58.628 47.619 0.00 0.00 35.97 3.25
8176 9105 1.183549 ACTTATCGAAGCTCCGTGGT 58.816 50.000 0.00 0.00 35.97 4.16
8177 9106 2.295253 AACTTATCGAAGCTCCGTGG 57.705 50.000 0.00 0.00 35.97 4.94
8178 9107 4.267928 CCTAAAACTTATCGAAGCTCCGTG 59.732 45.833 0.00 0.00 35.97 4.94
8179 9108 4.430908 CCTAAAACTTATCGAAGCTCCGT 58.569 43.478 0.00 0.00 35.97 4.69
8180 9109 3.802685 CCCTAAAACTTATCGAAGCTCCG 59.197 47.826 0.00 0.00 35.97 4.63
8182 9111 4.767478 ACCCCTAAAACTTATCGAAGCTC 58.233 43.478 0.00 0.00 35.97 4.09
8189 9152 8.618677 CCGATCTTAAAACCCCTAAAACTTATC 58.381 37.037 0.00 0.00 0.00 1.75
8222 9185 4.006989 TGGGAGTACACATTTTGGATTCG 58.993 43.478 0.00 0.00 0.00 3.34
8279 9242 3.123959 CCGTGTTCGTCCGAAAATACATT 59.876 43.478 3.37 0.00 35.75 2.71
8290 9253 1.262417 GGAAGAAAACCGTGTTCGTCC 59.738 52.381 17.49 17.49 43.32 4.79
8306 9269 4.264460 ACAAACTAGCTGAGAGTGGAAG 57.736 45.455 0.00 0.00 0.00 3.46
8393 9357 7.120285 GTCAGGATTCAGATTGAGATTGAACAA 59.880 37.037 0.00 0.00 34.04 2.83
8397 9361 6.303903 TGTCAGGATTCAGATTGAGATTGA 57.696 37.500 0.00 0.00 0.00 2.57
8398 9362 6.997239 TTGTCAGGATTCAGATTGAGATTG 57.003 37.500 0.00 0.00 0.00 2.67
8399 9363 6.376581 GGTTTGTCAGGATTCAGATTGAGATT 59.623 38.462 0.00 0.00 0.00 2.40
8400 9364 5.884792 GGTTTGTCAGGATTCAGATTGAGAT 59.115 40.000 0.00 0.00 0.00 2.75
8401 9365 5.221904 TGGTTTGTCAGGATTCAGATTGAGA 60.222 40.000 0.00 0.00 0.00 3.27
8402 9366 5.005740 TGGTTTGTCAGGATTCAGATTGAG 58.994 41.667 0.00 0.00 0.00 3.02
8427 9391 4.965382 GCAGTCGCTTTCCATAAAATGGTC 60.965 45.833 5.86 0.00 42.57 4.02
8477 9441 3.250762 CGCAAATGATGATAATGTCCCGT 59.749 43.478 0.00 0.00 0.00 5.28
8480 9444 3.254166 AGGCGCAAATGATGATAATGTCC 59.746 43.478 10.83 0.00 0.00 4.02
8511 9476 7.011857 CCCTGCTTAGAATGATGAGAAAACTAC 59.988 40.741 0.00 0.00 0.00 2.73
8551 9516 1.067915 CGCATTTGGTGTAAAGTGGGG 60.068 52.381 0.00 0.00 0.00 4.96
8884 9850 1.338337 CCTGTCGGTGGCAGATAGTAG 59.662 57.143 0.00 0.00 36.12 2.57
8885 9851 1.399714 CCTGTCGGTGGCAGATAGTA 58.600 55.000 0.00 0.00 36.12 1.82
8886 9852 1.330655 CCCTGTCGGTGGCAGATAGT 61.331 60.000 0.00 0.00 36.12 2.12
8994 9960 7.148540 CCCATAAATTTGAAAGTGTTCATGCAG 60.149 37.037 0.00 0.00 43.29 4.41
8995 9961 6.649973 CCCATAAATTTGAAAGTGTTCATGCA 59.350 34.615 0.00 0.00 43.29 3.96
8996 9962 6.402442 GCCCATAAATTTGAAAGTGTTCATGC 60.402 38.462 0.00 0.00 43.29 4.06
8997 9963 6.092533 GGCCCATAAATTTGAAAGTGTTCATG 59.907 38.462 0.00 0.00 43.29 3.07
8998 9964 6.172630 GGCCCATAAATTTGAAAGTGTTCAT 58.827 36.000 0.00 0.00 43.29 2.57
9021 9987 2.498167 GCCATGATAGTAAGGCAGTGG 58.502 52.381 0.00 0.00 46.26 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.