Multiple sequence alignment - TraesCS4A01G079100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G079100 chr4A 100.000 5706 0 0 1 5706 80839668 80845373 0.000000e+00 10538.0
1 TraesCS4A01G079100 chr4A 88.182 110 5 1 1417 1518 539752683 539752574 2.160000e-24 124.0
2 TraesCS4A01G079100 chr4A 79.130 115 16 1 1412 1518 583950209 583950095 7.930000e-09 73.1
3 TraesCS4A01G079100 chr4D 92.514 2498 131 30 1585 4045 409141514 409143992 0.000000e+00 3526.0
4 TraesCS4A01G079100 chr4D 94.970 1491 51 8 4224 5706 409143981 409145455 0.000000e+00 2316.0
5 TraesCS4A01G079100 chr4D 90.512 527 34 11 894 1410 409140782 409141302 0.000000e+00 682.0
6 TraesCS4A01G079100 chr4D 90.984 122 11 0 3876 3997 409144109 409143988 1.270000e-36 165.0
7 TraesCS4A01G079100 chr4D 88.889 108 4 1 1417 1516 360762932 360763039 6.000000e-25 126.0
8 TraesCS4A01G079100 chr4D 88.889 72 8 0 3876 3947 64576167 64576238 7.870000e-14 89.8
9 TraesCS4A01G079100 chr4D 81.416 113 12 4 1413 1516 440586837 440586725 3.660000e-12 84.2
10 TraesCS4A01G079100 chr4B 94.313 1811 78 15 1761 3560 506926894 506925098 0.000000e+00 2750.0
11 TraesCS4A01G079100 chr4B 94.903 1491 53 8 4233 5706 506924341 506922857 0.000000e+00 2311.0
12 TraesCS4A01G079100 chr4B 90.303 495 41 5 3558 4045 506924940 506924446 4.820000e-180 641.0
13 TraesCS4A01G079100 chr4B 89.727 477 30 11 950 1410 506927872 506927399 4.920000e-165 592.0
14 TraesCS4A01G079100 chr4B 85.873 361 43 4 417 770 519506427 519506068 1.500000e-100 377.0
15 TraesCS4A01G079100 chr4B 92.771 166 12 0 4045 4210 206802590 206802755 2.050000e-59 241.0
16 TraesCS4A01G079100 chr4B 85.542 166 15 1 3876 4041 506924222 506924378 1.270000e-36 165.0
17 TraesCS4A01G079100 chr4B 87.903 124 13 1 4231 4352 506924495 506924618 1.660000e-30 145.0
18 TraesCS4A01G079100 chr1D 83.668 747 104 11 32 767 88219435 88220174 0.000000e+00 688.0
19 TraesCS4A01G079100 chr1D 86.842 114 7 1 1417 1522 85196224 85196111 2.790000e-23 121.0
20 TraesCS4A01G079100 chr2D 83.133 747 108 8 32 767 73486280 73487019 0.000000e+00 665.0
21 TraesCS4A01G079100 chr2D 81.842 760 100 13 40 770 509227074 509226324 6.320000e-169 604.0
22 TraesCS4A01G079100 chr2D 94.444 180 9 1 4040 4218 268894289 268894468 5.630000e-70 276.0
23 TraesCS4A01G079100 chr2D 93.976 166 10 0 4045 4210 512768303 512768138 9.490000e-63 252.0
24 TraesCS4A01G079100 chr2D 81.250 144 23 4 3874 4015 334320221 334320362 4.670000e-21 113.0
25 TraesCS4A01G079100 chr5B 86.107 619 78 5 39 655 438501347 438501959 0.000000e+00 660.0
26 TraesCS4A01G079100 chr5B 90.960 177 15 1 4043 4218 573003543 573003719 2.660000e-58 237.0
27 TraesCS4A01G079100 chr1A 83.516 728 99 13 50 767 84627746 84628462 0.000000e+00 660.0
28 TraesCS4A01G079100 chr1A 89.286 84 7 2 1442 1523 578480331 578480248 2.810000e-18 104.0
29 TraesCS4A01G079100 chr1A 80.992 121 14 4 1411 1522 462008029 462008149 2.830000e-13 87.9
30 TraesCS4A01G079100 chr1A 90.698 43 2 2 1412 1454 578522484 578522444 7.990000e-04 56.5
31 TraesCS4A01G079100 chr6A 83.495 721 84 17 49 764 435311193 435311883 1.730000e-179 640.0
32 TraesCS4A01G079100 chr6A 96.154 52 0 2 4311 4361 607376952 607377002 3.660000e-12 84.2
33 TraesCS4A01G079100 chr3A 81.989 744 111 15 40 770 27047530 27046797 1.360000e-170 610.0
34 TraesCS4A01G079100 chr2B 81.732 739 105 15 39 769 764738717 764739433 1.770000e-164 590.0
35 TraesCS4A01G079100 chr2B 80.339 590 95 13 39 624 463478581 463479153 1.470000e-115 427.0
36 TraesCS4A01G079100 chr2B 80.000 145 24 4 3873 4015 402689028 402688887 1.010000e-17 102.0
37 TraesCS4A01G079100 chr2B 91.228 57 2 3 4312 4368 13775315 13775262 2.200000e-09 75.0
38 TraesCS4A01G079100 chr3D 83.659 563 85 6 213 770 612310364 612309804 1.820000e-144 523.0
39 TraesCS4A01G079100 chr3D 89.674 184 17 2 4037 4218 467283479 467283662 3.440000e-57 233.0
40 TraesCS4A01G079100 chr3D 92.593 81 6 0 1442 1522 25403926 25403846 3.610000e-22 117.0
41 TraesCS4A01G079100 chr7D 80.403 546 79 14 32 554 138511853 138511313 1.930000e-104 390.0
42 TraesCS4A01G079100 chr2A 93.370 181 11 1 4040 4219 317953342 317953162 3.390000e-67 267.0
43 TraesCS4A01G079100 chr5D 93.750 176 11 0 4043 4218 299073584 299073409 1.220000e-66 265.0
44 TraesCS4A01G079100 chr5D 90.909 132 9 3 3873 4003 301576141 301576012 2.110000e-39 174.0
45 TraesCS4A01G079100 chr5D 86.842 114 7 2 1414 1519 560243045 560242932 2.790000e-23 121.0
46 TraesCS4A01G079100 chr5D 85.321 109 8 1 1417 1517 263142943 263142835 7.820000e-19 106.0
47 TraesCS4A01G079100 chr5D 93.750 48 1 2 4312 4358 551289253 551289207 2.850000e-08 71.3
48 TraesCS4A01G079100 chr7A 92.529 174 11 1 4046 4219 503442319 503442490 1.230000e-61 248.0
49 TraesCS4A01G079100 chr7A 91.160 181 11 4 4043 4218 356367918 356367738 2.050000e-59 241.0
50 TraesCS4A01G079100 chr5A 92.481 133 7 3 3873 4003 395915487 395915618 2.710000e-43 187.0
51 TraesCS4A01G079100 chr5A 87.619 105 5 1 1417 1513 651518341 651518445 1.300000e-21 115.0
52 TraesCS4A01G079100 chr5A 82.301 113 12 3 1414 1518 622371723 622371611 2.190000e-14 91.6
53 TraesCS4A01G079100 chr5A 95.918 49 0 2 4311 4358 265046127 265046080 1.700000e-10 78.7
54 TraesCS4A01G079100 chrUn 87.963 108 5 2 1417 1516 288604690 288604583 2.790000e-23 121.0
55 TraesCS4A01G079100 chrUn 95.745 47 0 2 4312 4358 198026596 198026640 2.200000e-09 75.0
56 TraesCS4A01G079100 chrUn 95.745 47 0 2 4312 4358 347055317 347055361 2.200000e-09 75.0
57 TraesCS4A01G079100 chr7B 87.963 108 5 2 1417 1516 709475548 709475655 2.790000e-23 121.0
58 TraesCS4A01G079100 chr3B 84.615 117 10 4 1412 1521 242208722 242208607 6.040000e-20 110.0
59 TraesCS4A01G079100 chr1B 83.333 114 11 3 1412 1517 457470200 457470087 1.310000e-16 99.0
60 TraesCS4A01G079100 chr1B 91.071 56 2 3 4312 4367 586766307 586766255 7.930000e-09 73.1
61 TraesCS4A01G079100 chr6B 90.698 43 3 1 1414 1456 469780413 469780454 7.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G079100 chr4A 80839668 80845373 5705 False 10538.000000 10538 100.000000 1 5706 1 chr4A.!!$F1 5705
1 TraesCS4A01G079100 chr4D 409140782 409145455 4673 False 2174.666667 3526 92.665333 894 5706 3 chr4D.!!$F3 4812
2 TraesCS4A01G079100 chr4B 506922857 506927872 5015 True 1573.500000 2750 92.311500 950 5706 4 chr4B.!!$R2 4756
3 TraesCS4A01G079100 chr1D 88219435 88220174 739 False 688.000000 688 83.668000 32 767 1 chr1D.!!$F1 735
4 TraesCS4A01G079100 chr2D 73486280 73487019 739 False 665.000000 665 83.133000 32 767 1 chr2D.!!$F1 735
5 TraesCS4A01G079100 chr2D 509226324 509227074 750 True 604.000000 604 81.842000 40 770 1 chr2D.!!$R1 730
6 TraesCS4A01G079100 chr5B 438501347 438501959 612 False 660.000000 660 86.107000 39 655 1 chr5B.!!$F1 616
7 TraesCS4A01G079100 chr1A 84627746 84628462 716 False 660.000000 660 83.516000 50 767 1 chr1A.!!$F1 717
8 TraesCS4A01G079100 chr6A 435311193 435311883 690 False 640.000000 640 83.495000 49 764 1 chr6A.!!$F1 715
9 TraesCS4A01G079100 chr3A 27046797 27047530 733 True 610.000000 610 81.989000 40 770 1 chr3A.!!$R1 730
10 TraesCS4A01G079100 chr2B 764738717 764739433 716 False 590.000000 590 81.732000 39 769 1 chr2B.!!$F2 730
11 TraesCS4A01G079100 chr2B 463478581 463479153 572 False 427.000000 427 80.339000 39 624 1 chr2B.!!$F1 585
12 TraesCS4A01G079100 chr3D 612309804 612310364 560 True 523.000000 523 83.659000 213 770 1 chr3D.!!$R2 557
13 TraesCS4A01G079100 chr7D 138511313 138511853 540 True 390.000000 390 80.403000 32 554 1 chr7D.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 927 0.040646 TGTGGGACGGATGGAGTAGT 59.959 55.0 0.00 0.00 0.00 2.73 F
1458 1553 0.032678 AGGACACTTCAGACAGCGTG 59.967 55.0 0.00 0.00 0.00 5.34 F
1471 1566 0.248580 CAGCGTGCAAAACAGCTCAA 60.249 50.0 0.00 0.00 36.80 3.02 F
2373 2787 0.613777 GACCGGGTCTGAAATCAGGT 59.386 55.0 19.92 1.08 43.91 4.00 F
4091 4681 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2373 2787 0.039618 GGTCTTGGGCCCATTGAGAA 59.960 55.000 29.23 8.68 0.00 2.87 R
2379 2795 0.846693 GTGATAGGTCTTGGGCCCAT 59.153 55.000 29.23 13.57 0.00 4.00 R
2957 3373 1.665679 CAGTCCATTCGTAATGCGCTT 59.334 47.619 9.73 0.00 41.07 4.68 R
4134 4724 0.036875 AGTACACAGCCTTTCCCTGC 59.963 55.000 0.00 0.00 33.65 4.85 R
5077 5677 1.015109 GATGTGTGCTGCCATCTCAG 58.985 55.000 9.28 0.00 35.63 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.307153 GTAGTCCATGCTTCCCCCA 58.693 57.895 0.00 0.00 0.00 4.96
19 20 0.107165 GTAGTCCATGCTTCCCCCAC 60.107 60.000 0.00 0.00 0.00 4.61
20 21 1.622607 TAGTCCATGCTTCCCCCACG 61.623 60.000 0.00 0.00 0.00 4.94
21 22 4.424711 TCCATGCTTCCCCCACGC 62.425 66.667 0.00 0.00 0.00 5.34
22 23 4.431131 CCATGCTTCCCCCACGCT 62.431 66.667 0.00 0.00 0.00 5.07
23 24 3.136123 CATGCTTCCCCCACGCTG 61.136 66.667 0.00 0.00 0.00 5.18
24 25 3.650950 ATGCTTCCCCCACGCTGT 61.651 61.111 0.00 0.00 0.00 4.40
25 26 3.628646 ATGCTTCCCCCACGCTGTC 62.629 63.158 0.00 0.00 0.00 3.51
27 28 4.410400 CTTCCCCCACGCTGTCCC 62.410 72.222 0.00 0.00 0.00 4.46
37 38 3.468140 GCTGTCCCCCGTCCCTAC 61.468 72.222 0.00 0.00 0.00 3.18
70 83 2.595463 GTGCTTGTGCCTGCCTCA 60.595 61.111 0.00 0.00 38.71 3.86
288 304 0.673644 CACCGGAAGAATGCGAAGGT 60.674 55.000 9.46 0.00 43.91 3.50
301 317 1.679153 GCGAAGGTTCTCTAGCTAGCT 59.321 52.381 23.12 23.12 36.11 3.32
302 318 2.879646 GCGAAGGTTCTCTAGCTAGCTA 59.120 50.000 22.85 22.85 36.11 3.32
314 330 5.492895 TCTAGCTAGCTATATCGAGCAGTT 58.507 41.667 24.36 0.00 45.43 3.16
522 596 4.448976 GGAAGGGGAAGGGGCTGC 62.449 72.222 0.00 0.00 0.00 5.25
627 701 3.445805 ACTTTGGTGGTCGTTTGAACATT 59.554 39.130 0.00 0.00 45.27 2.71
640 720 7.646130 GTCGTTTGAACATTTGATCTTTTGGTA 59.354 33.333 0.00 0.00 0.00 3.25
662 743 6.127451 GGTAAAAGTAATGGCTTGCCTATGTT 60.127 38.462 13.18 5.53 0.00 2.71
671 752 3.552068 GGCTTGCCTATGTTCGTTTGTTT 60.552 43.478 4.11 0.00 0.00 2.83
692 773 7.922837 TGTTTATCTATGTAGTTCGATCGACA 58.077 34.615 19.26 13.65 0.00 4.35
703 784 1.933181 TCGATCGACATTGCATGGTTC 59.067 47.619 15.15 0.00 33.60 3.62
709 790 5.017294 TCGACATTGCATGGTTCAGTATA 57.983 39.130 0.00 0.00 33.60 1.47
750 831 6.872628 ATAAGATACACGGATGTAGACGAA 57.127 37.500 0.00 0.00 44.51 3.85
770 851 0.107654 ACTATTTGAGGAGTGCCCGC 60.108 55.000 0.00 0.00 40.87 6.13
771 852 1.153449 TATTTGAGGAGTGCCCGCG 60.153 57.895 0.00 0.00 40.87 6.46
772 853 2.587322 TATTTGAGGAGTGCCCGCGG 62.587 60.000 21.04 21.04 40.87 6.46
789 870 3.423154 GGCACGGGCGTTTGAGAG 61.423 66.667 2.17 0.00 42.47 3.20
790 871 3.423154 GCACGGGCGTTTGAGAGG 61.423 66.667 0.00 0.00 0.00 3.69
791 872 2.030562 CACGGGCGTTTGAGAGGT 59.969 61.111 0.00 0.00 0.00 3.85
792 873 1.597027 CACGGGCGTTTGAGAGGTT 60.597 57.895 0.00 0.00 0.00 3.50
793 874 1.301479 ACGGGCGTTTGAGAGGTTC 60.301 57.895 0.00 0.00 0.00 3.62
794 875 2.033194 CGGGCGTTTGAGAGGTTCC 61.033 63.158 0.00 0.00 0.00 3.62
795 876 1.375326 GGGCGTTTGAGAGGTTCCT 59.625 57.895 0.00 0.00 0.00 3.36
796 877 0.250770 GGGCGTTTGAGAGGTTCCTT 60.251 55.000 0.00 0.00 0.00 3.36
797 878 1.605753 GGCGTTTGAGAGGTTCCTTT 58.394 50.000 0.00 0.00 0.00 3.11
798 879 2.551504 GGGCGTTTGAGAGGTTCCTTTA 60.552 50.000 0.00 0.00 0.00 1.85
799 880 2.483106 GGCGTTTGAGAGGTTCCTTTAC 59.517 50.000 0.00 0.00 0.00 2.01
800 881 3.135994 GCGTTTGAGAGGTTCCTTTACA 58.864 45.455 0.00 0.00 0.00 2.41
801 882 3.059120 GCGTTTGAGAGGTTCCTTTACAC 60.059 47.826 0.00 0.00 0.00 2.90
802 883 3.183775 CGTTTGAGAGGTTCCTTTACACG 59.816 47.826 0.00 0.00 0.00 4.49
803 884 3.396260 TTGAGAGGTTCCTTTACACGG 57.604 47.619 0.00 0.00 0.00 4.94
804 885 1.001633 TGAGAGGTTCCTTTACACGGC 59.998 52.381 0.00 0.00 0.00 5.68
805 886 0.323957 AGAGGTTCCTTTACACGGCC 59.676 55.000 0.00 0.00 0.00 6.13
806 887 1.004200 AGGTTCCTTTACACGGCCG 60.004 57.895 26.86 26.86 0.00 6.13
807 888 1.301953 GGTTCCTTTACACGGCCGT 60.302 57.895 28.70 28.70 0.00 5.68
808 889 0.886043 GGTTCCTTTACACGGCCGTT 60.886 55.000 32.11 22.02 0.00 4.44
809 890 0.236449 GTTCCTTTACACGGCCGTTG 59.764 55.000 32.11 25.40 0.00 4.10
810 891 0.106335 TTCCTTTACACGGCCGTTGA 59.894 50.000 32.11 17.35 0.00 3.18
811 892 0.322322 TCCTTTACACGGCCGTTGAT 59.678 50.000 32.11 19.85 0.00 2.57
812 893 0.446222 CCTTTACACGGCCGTTGATG 59.554 55.000 32.11 20.61 0.00 3.07
813 894 0.179200 CTTTACACGGCCGTTGATGC 60.179 55.000 32.11 0.00 0.00 3.91
814 895 0.604243 TTTACACGGCCGTTGATGCT 60.604 50.000 32.11 10.56 0.00 3.79
815 896 1.017177 TTACACGGCCGTTGATGCTC 61.017 55.000 32.11 0.00 0.00 4.26
816 897 2.845752 TACACGGCCGTTGATGCTCC 62.846 60.000 32.11 0.00 0.00 4.70
817 898 3.706373 ACGGCCGTTGATGCTCCT 61.706 61.111 28.70 0.00 0.00 3.69
818 899 2.892425 CGGCCGTTGATGCTCCTC 60.892 66.667 19.50 0.00 0.00 3.71
819 900 2.514824 GGCCGTTGATGCTCCTCC 60.515 66.667 0.00 0.00 0.00 4.30
820 901 2.892425 GCCGTTGATGCTCCTCCG 60.892 66.667 0.00 0.00 0.00 4.63
821 902 2.892640 CCGTTGATGCTCCTCCGA 59.107 61.111 0.00 0.00 0.00 4.55
822 903 1.443407 CCGTTGATGCTCCTCCGAT 59.557 57.895 0.00 0.00 0.00 4.18
823 904 0.673985 CCGTTGATGCTCCTCCGATA 59.326 55.000 0.00 0.00 0.00 2.92
824 905 1.273606 CCGTTGATGCTCCTCCGATAT 59.726 52.381 0.00 0.00 0.00 1.63
825 906 2.289072 CCGTTGATGCTCCTCCGATATT 60.289 50.000 0.00 0.00 0.00 1.28
826 907 3.056821 CCGTTGATGCTCCTCCGATATTA 60.057 47.826 0.00 0.00 0.00 0.98
827 908 4.382040 CCGTTGATGCTCCTCCGATATTAT 60.382 45.833 0.00 0.00 0.00 1.28
828 909 4.564372 CGTTGATGCTCCTCCGATATTATG 59.436 45.833 0.00 0.00 0.00 1.90
829 910 5.482908 GTTGATGCTCCTCCGATATTATGT 58.517 41.667 0.00 0.00 0.00 2.29
830 911 5.077134 TGATGCTCCTCCGATATTATGTG 57.923 43.478 0.00 0.00 0.00 3.21
831 912 3.961480 TGCTCCTCCGATATTATGTGG 57.039 47.619 0.00 0.00 0.00 4.17
832 913 2.567169 TGCTCCTCCGATATTATGTGGG 59.433 50.000 0.00 0.00 0.00 4.61
833 914 2.832129 GCTCCTCCGATATTATGTGGGA 59.168 50.000 0.00 0.00 0.00 4.37
834 915 3.368531 GCTCCTCCGATATTATGTGGGAC 60.369 52.174 0.00 0.00 0.00 4.46
835 916 2.823747 TCCTCCGATATTATGTGGGACG 59.176 50.000 0.00 0.00 0.00 4.79
836 917 2.094182 CCTCCGATATTATGTGGGACGG 60.094 54.545 0.00 0.00 40.16 4.79
837 918 2.823747 CTCCGATATTATGTGGGACGGA 59.176 50.000 0.00 0.00 44.18 4.69
838 919 3.437213 TCCGATATTATGTGGGACGGAT 58.563 45.455 0.00 0.00 42.14 4.18
839 920 3.194755 TCCGATATTATGTGGGACGGATG 59.805 47.826 0.00 0.00 42.14 3.51
840 921 3.521560 CGATATTATGTGGGACGGATGG 58.478 50.000 0.00 0.00 0.00 3.51
841 922 3.194755 CGATATTATGTGGGACGGATGGA 59.805 47.826 0.00 0.00 0.00 3.41
842 923 4.678044 CGATATTATGTGGGACGGATGGAG 60.678 50.000 0.00 0.00 0.00 3.86
843 924 1.874129 TTATGTGGGACGGATGGAGT 58.126 50.000 0.00 0.00 0.00 3.85
844 925 2.759839 TATGTGGGACGGATGGAGTA 57.240 50.000 0.00 0.00 0.00 2.59
845 926 1.414158 ATGTGGGACGGATGGAGTAG 58.586 55.000 0.00 0.00 0.00 2.57
846 927 0.040646 TGTGGGACGGATGGAGTAGT 59.959 55.000 0.00 0.00 0.00 2.73
847 928 1.192428 GTGGGACGGATGGAGTAGTT 58.808 55.000 0.00 0.00 0.00 2.24
848 929 1.553704 GTGGGACGGATGGAGTAGTTT 59.446 52.381 0.00 0.00 0.00 2.66
849 930 2.027469 GTGGGACGGATGGAGTAGTTTT 60.027 50.000 0.00 0.00 0.00 2.43
850 931 2.640826 TGGGACGGATGGAGTAGTTTTT 59.359 45.455 0.00 0.00 0.00 1.94
912 993 0.605589 CTCCCGGGTTGAACCAAGTC 60.606 60.000 22.86 0.00 41.02 3.01
946 1027 1.079543 CTCTCAACCTCCACAGCCG 60.080 63.158 0.00 0.00 0.00 5.52
965 1046 2.143925 CGAACTGAACTTCTGAACCCC 58.856 52.381 2.88 0.00 0.00 4.95
967 1048 3.551846 GAACTGAACTTCTGAACCCCAA 58.448 45.455 2.88 0.00 0.00 4.12
1066 1153 4.510340 CCATATCCTTGTTTGCGTACTACC 59.490 45.833 0.00 0.00 0.00 3.18
1086 1173 4.521062 CTCTTCGGCAGGAGCGGG 62.521 72.222 0.00 0.00 43.41 6.13
1102 1189 1.847798 CGGGTCCAAGTTCCCATGGA 61.848 60.000 15.22 0.00 43.57 3.41
1185 1272 2.842462 ACGCCCCTCATCCGCATA 60.842 61.111 0.00 0.00 0.00 3.14
1224 1317 0.388134 CCGGGTGCGAGGTATATTCG 60.388 60.000 0.00 5.52 40.85 3.34
1231 1324 1.888512 GCGAGGTATATTCGTGGGGTA 59.111 52.381 10.17 0.00 40.08 3.69
1266 1360 1.082104 CCGCTTTGCTGTTTCGGTC 60.082 57.895 0.00 0.00 35.75 4.79
1271 1365 2.548480 GCTTTGCTGTTTCGGTCTAAGT 59.452 45.455 0.00 0.00 0.00 2.24
1272 1366 3.744426 GCTTTGCTGTTTCGGTCTAAGTA 59.256 43.478 0.00 0.00 0.00 2.24
1273 1367 4.392138 GCTTTGCTGTTTCGGTCTAAGTAT 59.608 41.667 0.00 0.00 0.00 2.12
1281 1376 6.860080 TGTTTCGGTCTAAGTATTGAGGTAG 58.140 40.000 0.00 0.00 0.00 3.18
1284 1379 5.748402 TCGGTCTAAGTATTGAGGTAGTGA 58.252 41.667 0.00 0.00 0.00 3.41
1290 1385 9.099454 GTCTAAGTATTGAGGTAGTGAATTTGG 57.901 37.037 0.00 0.00 0.00 3.28
1299 1394 6.592607 TGAGGTAGTGAATTTGGTATTCGAAC 59.407 38.462 0.00 0.00 0.00 3.95
1301 1396 4.939509 AGTGAATTTGGTATTCGAACGG 57.060 40.909 0.00 0.00 0.00 4.44
1396 1491 3.410631 TCGAGGAGGTAATTTGTGCAA 57.589 42.857 0.00 0.00 0.00 4.08
1399 1494 4.764823 TCGAGGAGGTAATTTGTGCAATTT 59.235 37.500 0.00 0.00 36.43 1.82
1406 1501 7.003402 AGGTAATTTGTGCAATTTGGTGTAT 57.997 32.000 0.00 0.00 36.43 2.29
1408 1503 8.589338 AGGTAATTTGTGCAATTTGGTGTATAA 58.411 29.630 0.00 0.00 36.43 0.98
1413 1508 9.669887 ATTTGTGCAATTTGGTGTATAATCAAT 57.330 25.926 0.00 0.00 0.00 2.57
1415 1510 7.609960 TGTGCAATTTGGTGTATAATCAATGT 58.390 30.769 0.00 0.00 0.00 2.71
1417 1512 9.579768 GTGCAATTTGGTGTATAATCAATGTTA 57.420 29.630 0.00 0.00 0.00 2.41
1418 1513 9.579768 TGCAATTTGGTGTATAATCAATGTTAC 57.420 29.630 0.00 0.00 0.00 2.50
1419 1514 9.801873 GCAATTTGGTGTATAATCAATGTTACT 57.198 29.630 0.00 0.00 0.00 2.24
1423 1518 7.446106 TGGTGTATAATCAATGTTACTCCCT 57.554 36.000 0.00 0.00 30.71 4.20
1424 1519 7.506114 TGGTGTATAATCAATGTTACTCCCTC 58.494 38.462 0.00 0.00 30.71 4.30
1426 1521 7.657761 GGTGTATAATCAATGTTACTCCCTCTG 59.342 40.741 0.00 0.00 0.00 3.35
1427 1522 8.204836 GTGTATAATCAATGTTACTCCCTCTGT 58.795 37.037 0.00 0.00 0.00 3.41
1428 1523 8.768397 TGTATAATCAATGTTACTCCCTCTGTT 58.232 33.333 0.00 0.00 0.00 3.16
1429 1524 9.262358 GTATAATCAATGTTACTCCCTCTGTTC 57.738 37.037 0.00 0.00 0.00 3.18
1430 1525 5.762179 ATCAATGTTACTCCCTCTGTTCA 57.238 39.130 0.00 0.00 0.00 3.18
1431 1526 4.894784 TCAATGTTACTCCCTCTGTTCAC 58.105 43.478 0.00 0.00 0.00 3.18
1432 1527 4.593206 TCAATGTTACTCCCTCTGTTCACT 59.407 41.667 0.00 0.00 0.00 3.41
1433 1528 5.071788 TCAATGTTACTCCCTCTGTTCACTT 59.928 40.000 0.00 0.00 0.00 3.16
1434 1529 5.568620 ATGTTACTCCCTCTGTTCACTTT 57.431 39.130 0.00 0.00 0.00 2.66
1435 1530 5.367945 TGTTACTCCCTCTGTTCACTTTT 57.632 39.130 0.00 0.00 0.00 2.27
1436 1531 6.488769 TGTTACTCCCTCTGTTCACTTTTA 57.511 37.500 0.00 0.00 0.00 1.52
1437 1532 7.074653 TGTTACTCCCTCTGTTCACTTTTAT 57.925 36.000 0.00 0.00 0.00 1.40
1438 1533 8.197592 TGTTACTCCCTCTGTTCACTTTTATA 57.802 34.615 0.00 0.00 0.00 0.98
1439 1534 8.653191 TGTTACTCCCTCTGTTCACTTTTATAA 58.347 33.333 0.00 0.00 0.00 0.98
1440 1535 9.152595 GTTACTCCCTCTGTTCACTTTTATAAG 57.847 37.037 0.00 0.00 37.40 1.73
1441 1536 6.712276 ACTCCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
1442 1537 6.500751 ACTCCCTCTGTTCACTTTTATAAGGA 59.499 38.462 0.00 0.00 35.61 3.36
1443 1538 6.708285 TCCCTCTGTTCACTTTTATAAGGAC 58.292 40.000 0.00 0.00 35.61 3.85
1444 1539 6.271391 TCCCTCTGTTCACTTTTATAAGGACA 59.729 38.462 0.00 0.02 35.61 4.02
1445 1540 6.371825 CCCTCTGTTCACTTTTATAAGGACAC 59.628 42.308 0.00 0.00 35.61 3.67
1446 1541 7.162082 CCTCTGTTCACTTTTATAAGGACACT 58.838 38.462 0.00 0.00 35.61 3.55
1447 1542 7.661847 CCTCTGTTCACTTTTATAAGGACACTT 59.338 37.037 0.00 0.00 40.74 3.16
1448 1543 8.603242 TCTGTTCACTTTTATAAGGACACTTC 57.397 34.615 0.00 0.00 38.14 3.01
1449 1544 8.208224 TCTGTTCACTTTTATAAGGACACTTCA 58.792 33.333 0.00 0.00 38.14 3.02
1450 1545 8.378172 TGTTCACTTTTATAAGGACACTTCAG 57.622 34.615 0.00 0.00 38.14 3.02
1451 1546 8.208224 TGTTCACTTTTATAAGGACACTTCAGA 58.792 33.333 0.00 0.00 38.14 3.27
1452 1547 8.496751 GTTCACTTTTATAAGGACACTTCAGAC 58.503 37.037 0.00 0.00 38.14 3.51
1453 1548 7.732025 TCACTTTTATAAGGACACTTCAGACA 58.268 34.615 0.00 0.00 38.14 3.41
1454 1549 7.872993 TCACTTTTATAAGGACACTTCAGACAG 59.127 37.037 0.00 0.00 38.14 3.51
1455 1550 6.651225 ACTTTTATAAGGACACTTCAGACAGC 59.349 38.462 0.00 0.00 38.14 4.40
1456 1551 2.724977 TAAGGACACTTCAGACAGCG 57.275 50.000 0.00 0.00 38.14 5.18
1457 1552 0.753262 AAGGACACTTCAGACAGCGT 59.247 50.000 0.00 0.00 28.54 5.07
1458 1553 0.032678 AGGACACTTCAGACAGCGTG 59.967 55.000 0.00 0.00 0.00 5.34
1459 1554 1.560860 GGACACTTCAGACAGCGTGC 61.561 60.000 0.00 0.00 0.00 5.34
1460 1555 0.875908 GACACTTCAGACAGCGTGCA 60.876 55.000 0.00 0.00 0.00 4.57
1461 1556 0.461870 ACACTTCAGACAGCGTGCAA 60.462 50.000 0.00 0.00 0.00 4.08
1462 1557 0.657312 CACTTCAGACAGCGTGCAAA 59.343 50.000 0.00 0.00 0.00 3.68
1463 1558 1.063912 CACTTCAGACAGCGTGCAAAA 59.936 47.619 0.00 0.00 0.00 2.44
1464 1559 1.064060 ACTTCAGACAGCGTGCAAAAC 59.936 47.619 0.00 0.00 0.00 2.43
1465 1560 1.063912 CTTCAGACAGCGTGCAAAACA 59.936 47.619 0.00 0.00 0.00 2.83
1466 1561 0.657312 TCAGACAGCGTGCAAAACAG 59.343 50.000 0.00 0.00 0.00 3.16
1467 1562 0.931662 CAGACAGCGTGCAAAACAGC 60.932 55.000 0.00 0.00 0.00 4.40
1468 1563 1.097547 AGACAGCGTGCAAAACAGCT 61.098 50.000 0.00 0.00 38.58 4.24
1469 1564 0.658536 GACAGCGTGCAAAACAGCTC 60.659 55.000 0.00 0.00 36.80 4.09
1470 1565 1.356270 CAGCGTGCAAAACAGCTCA 59.644 52.632 0.00 0.00 36.80 4.26
1471 1566 0.248580 CAGCGTGCAAAACAGCTCAA 60.249 50.000 0.00 0.00 36.80 3.02
1472 1567 0.670162 AGCGTGCAAAACAGCTCAAT 59.330 45.000 0.00 0.00 34.86 2.57
1473 1568 1.067516 AGCGTGCAAAACAGCTCAATT 59.932 42.857 0.00 0.00 34.86 2.32
1474 1569 1.860326 GCGTGCAAAACAGCTCAATTT 59.140 42.857 0.00 0.00 34.99 1.82
1475 1570 2.097250 GCGTGCAAAACAGCTCAATTTC 60.097 45.455 0.00 0.00 34.99 2.17
1476 1571 3.114809 CGTGCAAAACAGCTCAATTTCA 58.885 40.909 0.00 0.00 34.99 2.69
1477 1572 3.180980 CGTGCAAAACAGCTCAATTTCAG 59.819 43.478 0.00 0.00 34.99 3.02
1478 1573 4.114794 GTGCAAAACAGCTCAATTTCAGT 58.885 39.130 0.00 0.00 34.99 3.41
1479 1574 4.567959 GTGCAAAACAGCTCAATTTCAGTT 59.432 37.500 0.00 0.00 34.99 3.16
1480 1575 4.567558 TGCAAAACAGCTCAATTTCAGTTG 59.432 37.500 0.00 0.00 34.99 3.16
1481 1576 4.567959 GCAAAACAGCTCAATTTCAGTTGT 59.432 37.500 0.00 0.00 36.94 3.32
1482 1577 5.276536 GCAAAACAGCTCAATTTCAGTTGTC 60.277 40.000 4.64 0.00 34.53 3.18
1483 1578 5.841957 AAACAGCTCAATTTCAGTTGTCT 57.158 34.783 4.64 0.00 34.53 3.41
1484 1579 4.825546 ACAGCTCAATTTCAGTTGTCTG 57.174 40.909 0.00 0.00 42.54 3.51
1495 1590 4.866508 TCAGTTGTCTGAAACGACCTAT 57.133 40.909 0.00 0.00 46.17 2.57
1496 1591 5.970317 TCAGTTGTCTGAAACGACCTATA 57.030 39.130 0.00 0.00 46.17 1.31
1497 1592 6.335471 TCAGTTGTCTGAAACGACCTATAA 57.665 37.500 0.00 0.00 46.17 0.98
1498 1593 6.751157 TCAGTTGTCTGAAACGACCTATAAA 58.249 36.000 0.00 0.00 46.17 1.40
1499 1594 7.211573 TCAGTTGTCTGAAACGACCTATAAAA 58.788 34.615 0.00 0.00 46.17 1.52
1500 1595 7.384115 TCAGTTGTCTGAAACGACCTATAAAAG 59.616 37.037 0.00 0.00 46.17 2.27
1501 1596 7.170998 CAGTTGTCTGAAACGACCTATAAAAGT 59.829 37.037 0.00 0.00 42.51 2.66
1502 1597 7.170998 AGTTGTCTGAAACGACCTATAAAAGTG 59.829 37.037 0.00 0.00 42.51 3.16
1503 1598 6.751157 TGTCTGAAACGACCTATAAAAGTGA 58.249 36.000 0.00 0.00 32.97 3.41
1504 1599 7.211573 TGTCTGAAACGACCTATAAAAGTGAA 58.788 34.615 0.00 0.00 32.97 3.18
1505 1600 7.711772 TGTCTGAAACGACCTATAAAAGTGAAA 59.288 33.333 0.00 0.00 32.97 2.69
1506 1601 8.221766 GTCTGAAACGACCTATAAAAGTGAAAG 58.778 37.037 0.00 0.00 0.00 2.62
1507 1602 7.386848 TCTGAAACGACCTATAAAAGTGAAAGG 59.613 37.037 0.00 0.00 0.00 3.11
1508 1603 7.218614 TGAAACGACCTATAAAAGTGAAAGGA 58.781 34.615 0.00 0.00 0.00 3.36
1509 1604 7.716123 TGAAACGACCTATAAAAGTGAAAGGAA 59.284 33.333 0.00 0.00 0.00 3.36
1510 1605 7.668525 AACGACCTATAAAAGTGAAAGGAAG 57.331 36.000 0.00 0.00 0.00 3.46
1511 1606 6.171213 ACGACCTATAAAAGTGAAAGGAAGG 58.829 40.000 0.00 0.00 0.00 3.46
1512 1607 6.013984 ACGACCTATAAAAGTGAAAGGAAGGA 60.014 38.462 0.00 0.00 0.00 3.36
1513 1608 6.535508 CGACCTATAAAAGTGAAAGGAAGGAG 59.464 42.308 0.00 0.00 0.00 3.69
1533 1788 7.354751 AGGAGTAGTTTATAGAAGCCAGAAG 57.645 40.000 0.00 0.00 0.00 2.85
1551 1806 3.835395 AGAAGGGGAGAAGTGTGAAGTAG 59.165 47.826 0.00 0.00 0.00 2.57
1552 1807 3.544698 AGGGGAGAAGTGTGAAGTAGA 57.455 47.619 0.00 0.00 0.00 2.59
1554 1809 5.208294 AGGGGAGAAGTGTGAAGTAGATA 57.792 43.478 0.00 0.00 0.00 1.98
1555 1810 5.205056 AGGGGAGAAGTGTGAAGTAGATAG 58.795 45.833 0.00 0.00 0.00 2.08
1556 1811 5.044030 AGGGGAGAAGTGTGAAGTAGATAGA 60.044 44.000 0.00 0.00 0.00 1.98
1557 1812 5.300792 GGGGAGAAGTGTGAAGTAGATAGAG 59.699 48.000 0.00 0.00 0.00 2.43
1558 1813 5.889289 GGGAGAAGTGTGAAGTAGATAGAGT 59.111 44.000 0.00 0.00 0.00 3.24
1559 1814 6.378848 GGGAGAAGTGTGAAGTAGATAGAGTT 59.621 42.308 0.00 0.00 0.00 3.01
1560 1815 7.415877 GGGAGAAGTGTGAAGTAGATAGAGTTC 60.416 44.444 0.00 0.00 0.00 3.01
1561 1816 7.079182 AGAAGTGTGAAGTAGATAGAGTTCG 57.921 40.000 0.00 0.00 32.33 3.95
1562 1817 6.655848 AGAAGTGTGAAGTAGATAGAGTTCGT 59.344 38.462 0.00 0.00 32.33 3.85
1563 1818 6.184580 AGTGTGAAGTAGATAGAGTTCGTG 57.815 41.667 0.00 0.00 32.33 4.35
1564 1819 5.124138 AGTGTGAAGTAGATAGAGTTCGTGG 59.876 44.000 0.00 0.00 32.33 4.94
1565 1820 5.008331 TGTGAAGTAGATAGAGTTCGTGGT 58.992 41.667 0.00 0.00 32.33 4.16
1566 1821 5.106277 TGTGAAGTAGATAGAGTTCGTGGTG 60.106 44.000 0.00 0.00 32.33 4.17
1567 1822 5.008331 TGAAGTAGATAGAGTTCGTGGTGT 58.992 41.667 0.00 0.00 32.33 4.16
1569 1824 5.979288 AGTAGATAGAGTTCGTGGTGTTT 57.021 39.130 0.00 0.00 0.00 2.83
1570 1825 5.952033 AGTAGATAGAGTTCGTGGTGTTTC 58.048 41.667 0.00 0.00 0.00 2.78
1571 1826 4.189639 AGATAGAGTTCGTGGTGTTTCC 57.810 45.455 0.00 0.00 0.00 3.13
1572 1827 2.427232 TAGAGTTCGTGGTGTTTCCG 57.573 50.000 0.00 0.00 39.52 4.30
1573 1828 0.878961 AGAGTTCGTGGTGTTTCCGC 60.879 55.000 0.00 0.00 42.80 5.54
1574 1829 1.153329 AGTTCGTGGTGTTTCCGCA 60.153 52.632 0.00 0.00 46.24 5.69
1577 1832 1.532007 GTTCGTGGTGTTTCCGCAATA 59.468 47.619 0.00 0.00 46.24 1.90
1578 1833 1.880271 TCGTGGTGTTTCCGCAATAA 58.120 45.000 0.00 0.00 46.24 1.40
1579 1834 2.219458 TCGTGGTGTTTCCGCAATAAA 58.781 42.857 0.00 0.00 46.24 1.40
1608 1992 3.372660 AGAGTTCGTGGTGAGAAGTTC 57.627 47.619 0.00 0.00 32.00 3.01
1613 1998 1.613925 TCGTGGTGAGAAGTTCCTGAG 59.386 52.381 0.00 0.00 0.00 3.35
1632 2017 1.820519 AGCGATTCATGCAATGTTGGT 59.179 42.857 0.00 0.00 46.80 3.67
1633 2018 2.159338 AGCGATTCATGCAATGTTGGTC 60.159 45.455 0.00 0.00 46.80 4.02
1635 2020 3.173599 CGATTCATGCAATGTTGGTCAC 58.826 45.455 0.00 0.00 46.80 3.67
1637 2022 1.889545 TCATGCAATGTTGGTCACGA 58.110 45.000 0.00 0.00 46.80 4.35
1638 2023 1.535028 TCATGCAATGTTGGTCACGAC 59.465 47.619 0.00 0.00 46.80 4.34
1639 2024 1.401409 CATGCAATGTTGGTCACGACC 60.401 52.381 9.38 9.38 45.14 4.79
1677 2063 2.495155 TGGGAGGTCATGTTCATGTG 57.505 50.000 11.73 0.00 0.00 3.21
1686 2072 1.131126 CATGTTCATGTGGCGAGTTCC 59.869 52.381 4.80 0.00 0.00 3.62
1744 2130 7.957992 AAGTATAGTCCTAGCATATGTACCC 57.042 40.000 4.29 0.00 0.00 3.69
1749 2135 8.967779 ATAGTCCTAGCATATGTACCCTTTTA 57.032 34.615 4.29 0.00 0.00 1.52
1751 2137 8.967779 AGTCCTAGCATATGTACCCTTTTATA 57.032 34.615 4.29 0.00 0.00 0.98
1752 2138 9.562226 AGTCCTAGCATATGTACCCTTTTATAT 57.438 33.333 4.29 0.00 0.00 0.86
1753 2139 9.601217 GTCCTAGCATATGTACCCTTTTATATG 57.399 37.037 4.29 0.00 36.86 1.78
1776 2185 7.759489 TGTTATGAGTTGCTAAAGGAACAAT 57.241 32.000 15.46 10.98 46.84 2.71
1778 2187 7.446931 TGTTATGAGTTGCTAAAGGAACAATCA 59.553 33.333 15.46 11.53 46.84 2.57
1779 2188 5.689383 TGAGTTGCTAAAGGAACAATCAC 57.311 39.130 15.46 3.84 46.84 3.06
1826 2235 4.661222 TGGAAAGCACCATTCAGTTATGA 58.339 39.130 0.00 0.00 34.77 2.15
1827 2236 4.458989 TGGAAAGCACCATTCAGTTATGAC 59.541 41.667 0.00 0.00 33.02 3.06
1828 2237 4.702131 GGAAAGCACCATTCAGTTATGACT 59.298 41.667 0.00 0.00 34.35 3.41
1829 2238 5.183904 GGAAAGCACCATTCAGTTATGACTT 59.816 40.000 0.00 0.00 34.35 3.01
1830 2239 5.633830 AAGCACCATTCAGTTATGACTTG 57.366 39.130 0.00 0.00 34.35 3.16
1831 2240 4.655963 AGCACCATTCAGTTATGACTTGT 58.344 39.130 0.00 0.00 34.35 3.16
1832 2241 4.456911 AGCACCATTCAGTTATGACTTGTG 59.543 41.667 0.00 0.00 35.84 3.33
1833 2242 4.455533 GCACCATTCAGTTATGACTTGTGA 59.544 41.667 4.64 0.00 35.16 3.58
1839 2248 7.041167 CCATTCAGTTATGACTTGTGAGTTTCA 60.041 37.037 0.00 0.00 35.88 2.69
1857 2266 8.656806 TGAGTTTCAAGTATAAAAGAGAAGGGA 58.343 33.333 0.00 0.00 0.00 4.20
1873 2282 6.042437 AGAGAAGGGATTTTGAATTGTGCTTT 59.958 34.615 0.00 0.00 0.00 3.51
1978 2387 3.606595 ATGGATGAGGCATGAGATACG 57.393 47.619 0.00 0.00 0.00 3.06
1980 2389 2.700371 TGGATGAGGCATGAGATACGTT 59.300 45.455 0.00 0.00 0.00 3.99
1989 2398 6.291377 AGGCATGAGATACGTTGTTGATATT 58.709 36.000 0.00 0.00 0.00 1.28
1990 2399 6.425114 AGGCATGAGATACGTTGTTGATATTC 59.575 38.462 0.00 0.00 0.00 1.75
1991 2400 6.202762 GGCATGAGATACGTTGTTGATATTCA 59.797 38.462 0.00 0.00 0.00 2.57
1992 2401 7.286508 GCATGAGATACGTTGTTGATATTCAG 58.713 38.462 0.00 0.00 0.00 3.02
1993 2402 7.042456 GCATGAGATACGTTGTTGATATTCAGT 60.042 37.037 0.00 0.00 0.00 3.41
1994 2403 8.820933 CATGAGATACGTTGTTGATATTCAGTT 58.179 33.333 0.00 0.00 0.00 3.16
1998 2407 9.825972 AGATACGTTGTTGATATTCAGTTTTTG 57.174 29.630 0.00 0.00 0.00 2.44
1999 2408 8.964420 ATACGTTGTTGATATTCAGTTTTTGG 57.036 30.769 0.00 0.00 0.00 3.28
2001 2410 7.932335 ACGTTGTTGATATTCAGTTTTTGGTA 58.068 30.769 0.00 0.00 0.00 3.25
2003 2412 7.858382 CGTTGTTGATATTCAGTTTTTGGTACA 59.142 33.333 0.00 0.00 0.00 2.90
2004 2413 9.180678 GTTGTTGATATTCAGTTTTTGGTACAG 57.819 33.333 0.00 0.00 42.39 2.74
2057 2471 5.530915 TCTTTTGACTTAACATGACACTGGG 59.469 40.000 0.00 0.00 0.00 4.45
2066 2480 8.522830 ACTTAACATGACACTGGGATTTTTATG 58.477 33.333 0.00 0.00 0.00 1.90
2068 2482 5.332743 ACATGACACTGGGATTTTTATGGT 58.667 37.500 0.00 0.00 0.00 3.55
2069 2483 5.185635 ACATGACACTGGGATTTTTATGGTG 59.814 40.000 0.00 0.00 0.00 4.17
2131 2545 2.180159 TAACAGAAGGGAGTGCCGGC 62.180 60.000 22.73 22.73 33.83 6.13
2176 2590 1.033746 TTGCTCCTGCTTATGGCTGC 61.034 55.000 0.00 0.00 42.39 5.25
2230 2644 3.522553 CGTTGAGAAGGTATGGAGGTTC 58.477 50.000 0.00 0.00 0.00 3.62
2233 2647 3.791320 TGAGAAGGTATGGAGGTTCTGT 58.209 45.455 0.00 0.00 29.28 3.41
2235 2649 5.338632 TGAGAAGGTATGGAGGTTCTGTTA 58.661 41.667 0.00 0.00 29.28 2.41
2261 2675 7.383687 TGTTCGAGAATTCTTGGTGTACTAAT 58.616 34.615 20.44 0.00 0.00 1.73
2263 2677 9.362539 GTTCGAGAATTCTTGGTGTACTAATTA 57.637 33.333 20.44 0.00 0.00 1.40
2278 2692 4.455606 ACTAATTAGGACATTCTGCTGCC 58.544 43.478 16.73 0.00 0.00 4.85
2314 2728 9.734620 TGAATTTCTACTTGAATTGTCTTGTTG 57.265 29.630 0.00 0.00 34.24 3.33
2318 2732 8.958119 TTCTACTTGAATTGTCTTGTTGTACT 57.042 30.769 0.00 0.00 0.00 2.73
2351 2765 7.930865 AGATGAACTAATTTAGATCAGACCAGC 59.069 37.037 17.84 2.43 40.27 4.85
2358 2772 1.686355 AGATCAGACCAGCTAGACCG 58.314 55.000 0.00 0.00 0.00 4.79
2373 2787 0.613777 GACCGGGTCTGAAATCAGGT 59.386 55.000 19.92 1.08 43.91 4.00
2379 2795 3.557054 CGGGTCTGAAATCAGGTTCTCAA 60.557 47.826 10.37 0.00 43.91 3.02
2402 2818 2.556559 GGGCCCAAGACCTATCACAAAA 60.557 50.000 19.95 0.00 0.00 2.44
2517 2933 1.541672 CCTTTCAAGGGTGTGGGGT 59.458 57.895 0.00 0.00 42.66 4.95
2584 3000 4.225042 TCTCCTACCAATGTTGCACAGTAT 59.775 41.667 0.00 0.00 0.00 2.12
2629 3045 9.595823 TTATGTTCCTGCTATGTAGTTTTACTC 57.404 33.333 0.00 0.00 0.00 2.59
2630 3046 6.999950 TGTTCCTGCTATGTAGTTTTACTCA 58.000 36.000 0.00 0.00 0.00 3.41
2676 3092 0.673644 TTGAAGCGCTTGGAGCTACC 60.674 55.000 30.47 10.98 45.31 3.18
2894 3310 1.603678 GCCTGACACTGGCAAATGTTG 60.604 52.381 13.25 3.08 45.75 3.33
2910 3326 5.505173 AATGTTGCCCTAATTCTGATTCG 57.495 39.130 0.00 0.00 0.00 3.34
3466 3886 6.149308 TGGAATAGCTATGCATACGATTTTGG 59.851 38.462 13.93 0.00 0.00 3.28
3483 3903 0.973632 TGGTGTGCGATTCCTGTACT 59.026 50.000 0.00 0.00 0.00 2.73
3508 3928 3.795877 CAGTTCCAAGCCACACAATTTT 58.204 40.909 0.00 0.00 0.00 1.82
3509 3929 3.556775 CAGTTCCAAGCCACACAATTTTG 59.443 43.478 0.00 0.00 0.00 2.44
3525 3945 8.636213 ACACAATTTTGAAGAATGACTCAATCT 58.364 29.630 0.00 0.00 0.00 2.40
3537 3957 5.023533 TGACTCAATCTATTGGTGTAGGC 57.976 43.478 3.00 0.00 38.30 3.93
3571 4151 9.821662 CGTACTGAGATCGTATATAAATTGTCA 57.178 33.333 0.00 0.00 0.00 3.58
3586 4166 1.807139 TGTCATATGCACAGCGTTGT 58.193 45.000 0.00 0.00 38.31 3.32
3672 4257 0.396811 ACTGCAGTCCGCCTTTAACT 59.603 50.000 15.25 0.00 41.33 2.24
3685 4270 5.124776 CCGCCTTTAACTGATCAACCAATTA 59.875 40.000 0.00 0.00 0.00 1.40
3730 4317 8.158132 TCCCTACAACTTAAATACATGTTGACA 58.842 33.333 2.30 0.00 41.35 3.58
3731 4318 8.788806 CCCTACAACTTAAATACATGTTGACAA 58.211 33.333 2.30 0.00 41.35 3.18
3759 4346 2.311841 CTCTTGGGTTATTGGGTCCCTT 59.688 50.000 10.00 0.00 41.58 3.95
3899 4486 5.595814 ACTCCCTCCGTTCCTAGATATAA 57.404 43.478 0.00 0.00 0.00 0.98
4001 4590 3.624861 GCTCACACACATGAAATCCCTAG 59.375 47.826 0.00 0.00 0.00 3.02
4035 4625 9.267084 GAGATGATTTATTTAGAAGACTCCCAC 57.733 37.037 0.00 0.00 0.00 4.61
4045 4635 2.814805 AGACTCCCACCCATGATTTG 57.185 50.000 0.00 0.00 0.00 2.32
4046 4636 2.278245 AGACTCCCACCCATGATTTGA 58.722 47.619 0.00 0.00 0.00 2.69
4047 4637 2.649312 AGACTCCCACCCATGATTTGAA 59.351 45.455 0.00 0.00 0.00 2.69
4048 4638 3.019564 GACTCCCACCCATGATTTGAAG 58.980 50.000 0.00 0.00 0.00 3.02
4049 4639 2.291800 ACTCCCACCCATGATTTGAAGG 60.292 50.000 0.00 0.00 0.00 3.46
4050 4640 1.006998 TCCCACCCATGATTTGAAGGG 59.993 52.381 0.00 0.00 46.96 3.95
4051 4641 1.488390 CCACCCATGATTTGAAGGGG 58.512 55.000 0.00 0.00 45.83 4.79
4054 4644 1.342374 ACCCATGATTTGAAGGGGAGC 60.342 52.381 1.34 0.00 45.83 4.70
4055 4645 1.406903 CCATGATTTGAAGGGGAGCC 58.593 55.000 0.00 0.00 0.00 4.70
4056 4646 1.063417 CCATGATTTGAAGGGGAGCCT 60.063 52.381 0.00 0.00 0.00 4.58
4058 4648 2.220653 TGATTTGAAGGGGAGCCTTG 57.779 50.000 0.00 0.00 0.00 3.61
4060 4650 0.615827 ATTTGAAGGGGAGCCTTGGC 60.616 55.000 2.97 2.97 0.00 4.52
4069 4659 3.605749 GAGCCTTGGCACAGCGGTA 62.606 63.158 14.54 0.00 42.39 4.02
4070 4660 2.671619 GCCTTGGCACAGCGGTAA 60.672 61.111 6.79 0.00 42.39 2.85
4072 4662 1.875963 CCTTGGCACAGCGGTAAAG 59.124 57.895 0.00 0.00 42.39 1.85
4073 4663 1.210155 CTTGGCACAGCGGTAAAGC 59.790 57.895 0.00 0.00 42.39 3.51
4082 4672 1.956802 GCGGTAAAGCTGTTGCCTT 59.043 52.632 11.70 0.00 40.80 4.35
4083 4673 0.387239 GCGGTAAAGCTGTTGCCTTG 60.387 55.000 11.70 2.30 40.80 3.61
4084 4674 0.951558 CGGTAAAGCTGTTGCCTTGT 59.048 50.000 11.70 0.00 40.80 3.16
4085 4675 1.334960 CGGTAAAGCTGTTGCCTTGTG 60.335 52.381 11.70 0.00 40.80 3.33
4086 4676 1.953686 GGTAAAGCTGTTGCCTTGTGA 59.046 47.619 7.98 0.00 40.80 3.58
4089 4679 0.395586 AAGCTGTTGCCTTGTGACCA 60.396 50.000 0.00 0.00 40.80 4.02
4091 4681 0.038892 GCTGTTGCCTTGTGACCATG 60.039 55.000 0.00 0.00 0.00 3.66
4092 4682 1.608055 CTGTTGCCTTGTGACCATGA 58.392 50.000 0.00 0.00 0.00 3.07
4093 4683 1.538512 CTGTTGCCTTGTGACCATGAG 59.461 52.381 0.00 0.00 0.00 2.90
4094 4684 0.883833 GTTGCCTTGTGACCATGAGG 59.116 55.000 0.00 0.00 42.21 3.86
4105 4695 3.143675 CCATGAGGTCACAGGTTCG 57.856 57.895 0.00 0.00 0.00 3.95
4106 4696 0.608130 CCATGAGGTCACAGGTTCGA 59.392 55.000 0.00 0.00 0.00 3.71
4107 4697 1.404717 CCATGAGGTCACAGGTTCGAG 60.405 57.143 0.00 0.00 0.00 4.04
4109 4699 0.959553 TGAGGTCACAGGTTCGAGTC 59.040 55.000 0.00 0.00 0.00 3.36
4110 4700 0.244178 GAGGTCACAGGTTCGAGTCC 59.756 60.000 1.17 1.17 0.00 3.85
4111 4701 1.186267 AGGTCACAGGTTCGAGTCCC 61.186 60.000 5.32 0.00 0.00 4.46
4112 4702 1.080705 GTCACAGGTTCGAGTCCCG 60.081 63.158 5.32 0.00 40.25 5.14
4113 4703 2.261671 CACAGGTTCGAGTCCCGG 59.738 66.667 0.00 0.00 39.14 5.73
4114 4704 2.116772 ACAGGTTCGAGTCCCGGA 59.883 61.111 0.73 0.00 39.14 5.14
4115 4705 1.532316 ACAGGTTCGAGTCCCGGAA 60.532 57.895 0.73 0.00 39.14 4.30
4116 4706 1.117142 ACAGGTTCGAGTCCCGGAAA 61.117 55.000 0.73 0.00 39.14 3.13
4118 4708 1.117142 AGGTTCGAGTCCCGGAAACA 61.117 55.000 0.73 0.00 39.14 2.83
4120 4710 1.005394 TTCGAGTCCCGGAAACAGC 60.005 57.895 0.73 0.00 39.14 4.40
4121 4711 2.434359 CGAGTCCCGGAAACAGCC 60.434 66.667 0.73 0.00 33.91 4.85
4122 4712 2.943978 CGAGTCCCGGAAACAGCCT 61.944 63.158 0.73 0.00 33.91 4.58
4123 4713 1.079057 GAGTCCCGGAAACAGCCTC 60.079 63.158 0.73 0.00 0.00 4.70
4125 4715 1.128188 AGTCCCGGAAACAGCCTCTT 61.128 55.000 0.73 0.00 0.00 2.85
4126 4716 0.955919 GTCCCGGAAACAGCCTCTTG 60.956 60.000 0.73 0.00 0.00 3.02
4127 4717 2.335712 CCCGGAAACAGCCTCTTGC 61.336 63.158 0.73 0.00 41.71 4.01
4128 4718 1.600636 CCGGAAACAGCCTCTTGCA 60.601 57.895 0.00 0.00 44.83 4.08
4129 4719 1.580845 CCGGAAACAGCCTCTTGCAG 61.581 60.000 0.00 0.00 44.83 4.41
4134 4724 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
4135 4725 0.886563 ACAGCCTCTTGCAGAAATGC 59.113 50.000 0.00 0.00 44.83 3.56
4137 4727 1.135373 CAGCCTCTTGCAGAAATGCAG 60.135 52.381 2.87 0.00 46.21 4.41
4138 4728 0.172803 GCCTCTTGCAGAAATGCAGG 59.827 55.000 6.04 6.04 46.21 4.85
4139 4729 0.815734 CCTCTTGCAGAAATGCAGGG 59.184 55.000 11.70 8.10 46.21 4.45
4140 4730 1.615116 CCTCTTGCAGAAATGCAGGGA 60.615 52.381 11.70 9.29 46.21 4.20
4141 4731 2.165167 CTCTTGCAGAAATGCAGGGAA 58.835 47.619 11.70 0.00 46.21 3.97
4142 4732 2.559668 CTCTTGCAGAAATGCAGGGAAA 59.440 45.455 11.70 0.00 46.21 3.13
4143 4733 2.559668 TCTTGCAGAAATGCAGGGAAAG 59.440 45.455 11.70 3.07 46.21 2.62
4144 4734 1.259609 TGCAGAAATGCAGGGAAAGG 58.740 50.000 0.00 0.00 40.23 3.11
4145 4735 0.108472 GCAGAAATGCAGGGAAAGGC 60.108 55.000 0.00 0.00 34.41 4.35
4147 4737 1.203994 CAGAAATGCAGGGAAAGGCTG 59.796 52.381 0.00 0.00 0.00 4.85
4149 4739 0.971386 AAATGCAGGGAAAGGCTGTG 59.029 50.000 0.00 0.00 0.00 3.66
4150 4740 0.178953 AATGCAGGGAAAGGCTGTGT 60.179 50.000 0.00 0.00 0.00 3.72
4151 4741 0.698238 ATGCAGGGAAAGGCTGTGTA 59.302 50.000 0.00 0.00 0.00 2.90
4152 4742 0.250727 TGCAGGGAAAGGCTGTGTAC 60.251 55.000 0.00 0.00 0.00 2.90
4153 4743 0.036875 GCAGGGAAAGGCTGTGTACT 59.963 55.000 0.00 0.00 0.00 2.73
4154 4744 1.278127 GCAGGGAAAGGCTGTGTACTA 59.722 52.381 0.00 0.00 0.00 1.82
4155 4745 2.092914 GCAGGGAAAGGCTGTGTACTAT 60.093 50.000 0.00 0.00 0.00 2.12
4156 4746 3.134081 GCAGGGAAAGGCTGTGTACTATA 59.866 47.826 0.00 0.00 0.00 1.31
4157 4747 4.740934 GCAGGGAAAGGCTGTGTACTATAG 60.741 50.000 0.00 0.00 0.00 1.31
4158 4748 4.649674 CAGGGAAAGGCTGTGTACTATAGA 59.350 45.833 6.78 0.00 0.00 1.98
4159 4749 4.650131 AGGGAAAGGCTGTGTACTATAGAC 59.350 45.833 6.78 1.24 0.00 2.59
4160 4750 4.404715 GGGAAAGGCTGTGTACTATAGACA 59.595 45.833 6.78 3.95 0.00 3.41
4161 4751 5.349809 GGAAAGGCTGTGTACTATAGACAC 58.650 45.833 19.93 19.93 46.07 3.67
4171 4761 5.798934 GTGTACTATAGACACAAAGTGGTCG 59.201 44.000 20.99 0.00 45.36 4.79
4172 4762 4.451629 ACTATAGACACAAAGTGGTCGG 57.548 45.455 6.78 0.00 37.94 4.79
4173 4763 4.084287 ACTATAGACACAAAGTGGTCGGA 58.916 43.478 6.78 0.00 37.94 4.55
4174 4764 2.806608 TAGACACAAAGTGGTCGGAC 57.193 50.000 0.00 0.00 37.94 4.79
4175 4765 0.106149 AGACACAAAGTGGTCGGACC 59.894 55.000 20.36 20.36 37.94 4.46
4176 4766 0.883370 GACACAAAGTGGTCGGACCC 60.883 60.000 23.81 14.91 37.50 4.46
4177 4767 1.342672 ACACAAAGTGGTCGGACCCT 61.343 55.000 23.81 16.82 37.50 4.34
4178 4768 0.884704 CACAAAGTGGTCGGACCCTG 60.885 60.000 23.81 16.81 37.50 4.45
4179 4769 1.966451 CAAAGTGGTCGGACCCTGC 60.966 63.158 23.81 13.84 37.50 4.85
4180 4770 3.530910 AAAGTGGTCGGACCCTGCG 62.531 63.158 23.81 0.00 37.50 5.18
4204 4794 4.814294 GGAGCTACGTGCACCGGG 62.814 72.222 12.15 0.00 42.21 5.73
4215 4805 2.282462 CACCGGGCTGCCTTCTTT 60.282 61.111 19.68 0.00 0.00 2.52
4216 4806 1.903404 CACCGGGCTGCCTTCTTTT 60.903 57.895 19.68 0.00 0.00 2.27
4217 4807 1.152546 ACCGGGCTGCCTTCTTTTT 60.153 52.632 19.68 0.00 0.00 1.94
4218 4808 0.111639 ACCGGGCTGCCTTCTTTTTA 59.888 50.000 19.68 0.00 0.00 1.52
4219 4809 0.526211 CCGGGCTGCCTTCTTTTTAC 59.474 55.000 19.68 0.00 0.00 2.01
4220 4810 1.534729 CGGGCTGCCTTCTTTTTACT 58.465 50.000 19.68 0.00 0.00 2.24
4221 4811 1.468914 CGGGCTGCCTTCTTTTTACTC 59.531 52.381 19.68 0.00 0.00 2.59
4222 4812 1.819288 GGGCTGCCTTCTTTTTACTCC 59.181 52.381 19.68 0.00 0.00 3.85
4223 4813 1.819288 GGCTGCCTTCTTTTTACTCCC 59.181 52.381 12.43 0.00 0.00 4.30
4256 4846 1.357137 TGTGTGGGAGCTGATTGGTA 58.643 50.000 0.00 0.00 0.00 3.25
4300 4890 8.480501 ACAAAGGTTATACACTGTATATTCCGT 58.519 33.333 9.31 10.08 0.00 4.69
4301 4891 9.321562 CAAAGGTTATACACTGTATATTCCGTT 57.678 33.333 9.31 13.97 0.00 4.44
4627 5227 1.419387 AGTGGGATGAGGCATCTAAGC 59.581 52.381 0.00 0.00 40.39 3.09
4685 5285 1.488812 TGACACCAACTGCTACTGGTT 59.511 47.619 1.93 0.00 43.62 3.67
4758 5358 5.107875 GCAATTTTGTCATTCTTCGTTGTCC 60.108 40.000 0.00 0.00 0.00 4.02
4762 5362 2.035449 TGTCATTCTTCGTTGTCCGTCT 59.965 45.455 0.00 0.00 37.94 4.18
4862 5462 3.515104 ACCTCAAATTTTATGGCACCCTG 59.485 43.478 0.00 0.00 0.00 4.45
4865 5465 5.452356 CCTCAAATTTTATGGCACCCTGATC 60.452 44.000 0.00 0.00 0.00 2.92
4957 5557 2.508526 AGCCAACCATTCAGACTGTTC 58.491 47.619 1.59 0.00 0.00 3.18
4988 5588 6.757947 TGCAAATCTTCTTGTTTTTCTTCAGG 59.242 34.615 0.00 0.00 0.00 3.86
5013 5613 2.039418 TGTACACTGCTCAAGTCACCT 58.961 47.619 0.00 0.00 36.83 4.00
5014 5614 2.224042 TGTACACTGCTCAAGTCACCTG 60.224 50.000 0.00 0.00 36.83 4.00
5077 5677 4.785511 TGCTACTACTGTCTTGGTTCTC 57.214 45.455 0.00 0.00 0.00 2.87
5121 5721 6.422776 ACTAGTCTGCGATAAAAACCATTG 57.577 37.500 0.00 0.00 0.00 2.82
5259 5860 8.642935 TTATGAATATTTCAGAACACCCACAA 57.357 30.769 0.00 0.00 43.98 3.33
5260 5861 6.573664 TGAATATTTCAGAACACCCACAAG 57.426 37.500 0.00 0.00 34.08 3.16
5265 5872 5.766150 TTTCAGAACACCCACAAGTTATG 57.234 39.130 0.00 0.00 38.07 1.90
5315 5922 2.769209 ACCTCCTCCTAGATTGTGCAT 58.231 47.619 0.00 0.00 0.00 3.96
5317 5924 2.038295 CCTCCTCCTAGATTGTGCATCC 59.962 54.545 0.00 0.00 31.20 3.51
5326 5933 0.748005 ATTGTGCATCCTACACGGCC 60.748 55.000 0.00 0.00 41.03 6.13
5332 5939 1.112113 CATCCTACACGGCCACTAGT 58.888 55.000 2.24 0.00 0.00 2.57
5473 6080 2.436109 GAGGCCAGCCCTTTGTCA 59.564 61.111 5.01 0.00 46.60 3.58
5530 6137 3.317571 AGCGGTGGCAGCTCTTCT 61.318 61.111 15.48 3.70 41.83 2.85
5587 6194 1.229625 ATGGAGAGTGGTCAGGGCA 60.230 57.895 0.00 0.00 0.00 5.36
5660 6267 0.095935 CTGCACGTTGCTGTAGATGC 59.904 55.000 10.54 0.00 45.31 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.107165 GTGGGGGAAGCATGGACTAC 60.107 60.000 0.00 0.00 0.00 2.73
1 2 1.622607 CGTGGGGGAAGCATGGACTA 61.623 60.000 0.00 0.00 0.00 2.59
2 3 2.971598 CGTGGGGGAAGCATGGACT 61.972 63.158 0.00 0.00 0.00 3.85
3 4 2.438434 CGTGGGGGAAGCATGGAC 60.438 66.667 0.00 0.00 0.00 4.02
4 5 4.424711 GCGTGGGGGAAGCATGGA 62.425 66.667 0.00 0.00 0.00 3.41
5 6 4.431131 AGCGTGGGGGAAGCATGG 62.431 66.667 0.00 0.00 0.00 3.66
6 7 3.136123 CAGCGTGGGGGAAGCATG 61.136 66.667 0.00 0.00 0.00 4.06
7 8 3.628646 GACAGCGTGGGGGAAGCAT 62.629 63.158 0.00 0.00 0.00 3.79
8 9 4.329545 GACAGCGTGGGGGAAGCA 62.330 66.667 0.00 0.00 0.00 3.91
10 11 4.410400 GGGACAGCGTGGGGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
20 21 3.468140 GTAGGGACGGGGGACAGC 61.468 72.222 0.00 0.00 0.00 4.40
21 22 2.762875 GGTAGGGACGGGGGACAG 60.763 72.222 0.00 0.00 0.00 3.51
22 23 4.764771 CGGTAGGGACGGGGGACA 62.765 72.222 0.00 0.00 0.00 4.02
91 104 4.724602 GCGCGCACCTCTGACTCA 62.725 66.667 29.10 0.00 0.00 3.41
129 142 4.148825 CGTCCCTCTCCCTTGCCG 62.149 72.222 0.00 0.00 0.00 5.69
178 194 0.179073 CATCAGGCTCCACGGGTAAG 60.179 60.000 0.00 0.00 0.00 2.34
186 202 1.000359 TCGTCCTCATCAGGCTCCA 60.000 57.895 0.00 0.00 40.12 3.86
245 261 2.775856 GCCGAGCATCTGTCTCCGA 61.776 63.158 0.00 0.00 0.00 4.55
288 304 5.735766 TGCTCGATATAGCTAGCTAGAGAA 58.264 41.667 29.31 21.92 43.19 2.87
339 355 2.925170 AGCCGAGCCACCTCTGTT 60.925 61.111 0.00 0.00 35.90 3.16
408 425 1.953686 GGAGAAGGAGGAGACGATGAG 59.046 57.143 0.00 0.00 0.00 2.90
522 596 0.107654 GATCTTCACCACTTCCGGGG 60.108 60.000 0.00 0.00 0.00 5.73
570 644 6.445357 ACGGACAACTTGAAACTACATTTT 57.555 33.333 0.00 0.00 0.00 1.82
572 646 4.210537 CGACGGACAACTTGAAACTACATT 59.789 41.667 0.00 0.00 0.00 2.71
640 720 5.393027 CGAACATAGGCAAGCCATTACTTTT 60.393 40.000 14.40 0.00 38.92 2.27
662 743 9.229784 GATCGAACTACATAGATAAACAAACGA 57.770 33.333 0.00 0.00 0.00 3.85
671 752 7.021790 GCAATGTCGATCGAACTACATAGATA 58.978 38.462 21.31 0.00 32.44 1.98
716 797 8.690884 CATCCGTGTATCTTATATCTGATCCTT 58.309 37.037 0.00 0.00 0.00 3.36
750 831 1.679032 GCGGGCACTCCTCAAATAGTT 60.679 52.381 0.00 0.00 0.00 2.24
772 853 3.423154 CTCTCAAACGCCCGTGCC 61.423 66.667 0.00 0.00 0.00 5.01
773 854 3.423154 CCTCTCAAACGCCCGTGC 61.423 66.667 0.00 0.00 0.00 5.34
774 855 1.566018 GAACCTCTCAAACGCCCGTG 61.566 60.000 0.00 0.00 0.00 4.94
775 856 1.301479 GAACCTCTCAAACGCCCGT 60.301 57.895 0.00 0.00 0.00 5.28
776 857 2.033194 GGAACCTCTCAAACGCCCG 61.033 63.158 0.00 0.00 0.00 6.13
777 858 0.250770 AAGGAACCTCTCAAACGCCC 60.251 55.000 0.00 0.00 0.00 6.13
778 859 1.605753 AAAGGAACCTCTCAAACGCC 58.394 50.000 0.00 0.00 0.00 5.68
779 860 3.059120 GTGTAAAGGAACCTCTCAAACGC 60.059 47.826 0.00 0.00 0.00 4.84
780 861 3.183775 CGTGTAAAGGAACCTCTCAAACG 59.816 47.826 0.00 0.00 0.00 3.60
781 862 3.497262 CCGTGTAAAGGAACCTCTCAAAC 59.503 47.826 0.00 0.00 37.88 2.93
782 863 3.735591 CCGTGTAAAGGAACCTCTCAAA 58.264 45.455 0.00 0.00 37.88 2.69
783 864 2.549349 GCCGTGTAAAGGAACCTCTCAA 60.549 50.000 0.00 0.00 37.88 3.02
784 865 1.001633 GCCGTGTAAAGGAACCTCTCA 59.998 52.381 0.00 0.00 37.88 3.27
785 866 1.675116 GGCCGTGTAAAGGAACCTCTC 60.675 57.143 0.00 0.00 37.88 3.20
786 867 0.323957 GGCCGTGTAAAGGAACCTCT 59.676 55.000 0.00 0.00 37.88 3.69
787 868 1.017701 CGGCCGTGTAAAGGAACCTC 61.018 60.000 19.50 0.00 37.88 3.85
788 869 1.004200 CGGCCGTGTAAAGGAACCT 60.004 57.895 19.50 0.00 37.88 3.50
789 870 0.886043 AACGGCCGTGTAAAGGAACC 60.886 55.000 34.95 0.00 37.88 3.62
790 871 0.236449 CAACGGCCGTGTAAAGGAAC 59.764 55.000 34.95 0.00 37.88 3.62
791 872 0.106335 TCAACGGCCGTGTAAAGGAA 59.894 50.000 34.95 8.31 37.88 3.36
792 873 0.322322 ATCAACGGCCGTGTAAAGGA 59.678 50.000 34.95 21.49 37.88 3.36
793 874 0.446222 CATCAACGGCCGTGTAAAGG 59.554 55.000 34.95 15.36 39.09 3.11
794 875 0.179200 GCATCAACGGCCGTGTAAAG 60.179 55.000 34.95 21.31 0.00 1.85
795 876 0.604243 AGCATCAACGGCCGTGTAAA 60.604 50.000 34.95 17.94 0.00 2.01
796 877 1.004320 AGCATCAACGGCCGTGTAA 60.004 52.632 34.95 20.71 0.00 2.41
797 878 1.447140 GAGCATCAACGGCCGTGTA 60.447 57.895 34.95 23.57 33.17 2.90
798 879 2.742372 GAGCATCAACGGCCGTGT 60.742 61.111 34.95 19.26 33.17 4.49
799 880 3.499737 GGAGCATCAACGGCCGTG 61.500 66.667 34.95 24.92 36.25 4.94
800 881 3.665675 GAGGAGCATCAACGGCCGT 62.666 63.158 28.70 28.70 36.25 5.68
801 882 2.892425 GAGGAGCATCAACGGCCG 60.892 66.667 26.86 26.86 36.25 6.13
802 883 2.514824 GGAGGAGCATCAACGGCC 60.515 66.667 0.00 0.00 36.25 6.13
803 884 2.650813 ATCGGAGGAGCATCAACGGC 62.651 60.000 0.00 0.00 36.25 5.68
804 885 0.673985 TATCGGAGGAGCATCAACGG 59.326 55.000 0.00 0.00 36.25 4.44
805 886 2.732412 ATATCGGAGGAGCATCAACG 57.268 50.000 0.00 0.00 36.25 4.10
806 887 5.349817 CACATAATATCGGAGGAGCATCAAC 59.650 44.000 0.00 0.00 36.25 3.18
807 888 5.482006 CACATAATATCGGAGGAGCATCAA 58.518 41.667 0.00 0.00 36.25 2.57
808 889 4.081476 CCACATAATATCGGAGGAGCATCA 60.081 45.833 0.00 0.00 36.25 3.07
809 890 4.437239 CCACATAATATCGGAGGAGCATC 58.563 47.826 0.00 0.00 0.00 3.91
810 891 3.198635 CCCACATAATATCGGAGGAGCAT 59.801 47.826 0.00 0.00 0.00 3.79
811 892 2.567169 CCCACATAATATCGGAGGAGCA 59.433 50.000 0.00 0.00 0.00 4.26
812 893 2.832129 TCCCACATAATATCGGAGGAGC 59.168 50.000 0.00 0.00 0.00 4.70
813 894 3.119459 CGTCCCACATAATATCGGAGGAG 60.119 52.174 0.00 0.00 31.61 3.69
814 895 2.823747 CGTCCCACATAATATCGGAGGA 59.176 50.000 0.00 0.00 31.61 3.71
815 896 2.094182 CCGTCCCACATAATATCGGAGG 60.094 54.545 0.00 0.00 38.96 4.30
816 897 2.823747 TCCGTCCCACATAATATCGGAG 59.176 50.000 0.00 0.00 40.28 4.63
817 898 2.879154 TCCGTCCCACATAATATCGGA 58.121 47.619 0.00 0.00 42.33 4.55
818 899 3.521560 CATCCGTCCCACATAATATCGG 58.478 50.000 0.00 0.00 38.16 4.18
819 900 3.194755 TCCATCCGTCCCACATAATATCG 59.805 47.826 0.00 0.00 0.00 2.92
820 901 4.223032 ACTCCATCCGTCCCACATAATATC 59.777 45.833 0.00 0.00 0.00 1.63
821 902 4.168101 ACTCCATCCGTCCCACATAATAT 58.832 43.478 0.00 0.00 0.00 1.28
822 903 3.583228 ACTCCATCCGTCCCACATAATA 58.417 45.455 0.00 0.00 0.00 0.98
823 904 2.408565 ACTCCATCCGTCCCACATAAT 58.591 47.619 0.00 0.00 0.00 1.28
824 905 1.874129 ACTCCATCCGTCCCACATAA 58.126 50.000 0.00 0.00 0.00 1.90
825 906 2.091499 ACTACTCCATCCGTCCCACATA 60.091 50.000 0.00 0.00 0.00 2.29
826 907 1.343075 ACTACTCCATCCGTCCCACAT 60.343 52.381 0.00 0.00 0.00 3.21
827 908 0.040646 ACTACTCCATCCGTCCCACA 59.959 55.000 0.00 0.00 0.00 4.17
828 909 1.192428 AACTACTCCATCCGTCCCAC 58.808 55.000 0.00 0.00 0.00 4.61
829 910 1.946984 AAACTACTCCATCCGTCCCA 58.053 50.000 0.00 0.00 0.00 4.37
830 911 3.345508 AAAAACTACTCCATCCGTCCC 57.654 47.619 0.00 0.00 0.00 4.46
912 993 2.933834 AGGGAGGGGGACAAACCG 60.934 66.667 0.00 0.00 40.11 4.44
917 998 1.229529 GTTGAGAGGGAGGGGGACA 60.230 63.158 0.00 0.00 0.00 4.02
919 1000 2.182858 GAGGTTGAGAGGGAGGGGGA 62.183 65.000 0.00 0.00 0.00 4.81
920 1001 1.690985 GAGGTTGAGAGGGAGGGGG 60.691 68.421 0.00 0.00 0.00 5.40
921 1002 1.690985 GGAGGTTGAGAGGGAGGGG 60.691 68.421 0.00 0.00 0.00 4.79
946 1027 3.208747 TGGGGTTCAGAAGTTCAGTTC 57.791 47.619 5.50 0.00 0.00 3.01
1212 1299 4.015084 AGATACCCCACGAATATACCTCG 58.985 47.826 4.86 4.86 42.06 4.63
1224 1317 0.107654 GCACACAGGAGATACCCCAC 60.108 60.000 0.00 0.00 40.05 4.61
1231 1324 1.601171 GGAGCTGCACACAGGAGAT 59.399 57.895 0.00 0.00 44.63 2.75
1259 1353 6.660521 TCACTACCTCAATACTTAGACCGAAA 59.339 38.462 0.00 0.00 0.00 3.46
1271 1365 8.479689 TCGAATACCAAATTCACTACCTCAATA 58.520 33.333 0.00 0.00 0.00 1.90
1272 1366 7.335627 TCGAATACCAAATTCACTACCTCAAT 58.664 34.615 0.00 0.00 0.00 2.57
1273 1367 6.703319 TCGAATACCAAATTCACTACCTCAA 58.297 36.000 0.00 0.00 0.00 3.02
1281 1376 3.729762 GCCCGTTCGAATACCAAATTCAC 60.730 47.826 0.00 0.00 0.00 3.18
1284 1379 2.422127 CAGCCCGTTCGAATACCAAATT 59.578 45.455 0.00 0.00 0.00 1.82
1290 1385 0.459585 TCTGCAGCCCGTTCGAATAC 60.460 55.000 9.47 0.00 0.00 1.89
1299 1394 2.515523 CCCAGAATCTGCAGCCCG 60.516 66.667 9.47 0.00 0.00 6.13
1301 1396 0.750911 CTTCCCCAGAATCTGCAGCC 60.751 60.000 9.47 0.28 0.00 4.85
1359 1454 1.482621 CGATGATCTTCACCGCCACG 61.483 60.000 9.10 0.00 0.00 4.94
1368 1463 6.201806 CACAAATTACCTCCTCGATGATCTTC 59.798 42.308 0.00 0.00 0.00 2.87
1374 1469 3.270027 TGCACAAATTACCTCCTCGATG 58.730 45.455 0.00 0.00 0.00 3.84
1396 1491 9.131791 GGGAGTAACATTGATTATACACCAAAT 57.868 33.333 0.00 0.00 32.65 2.32
1399 1494 7.347222 AGAGGGAGTAACATTGATTATACACCA 59.653 37.037 0.00 0.00 32.65 4.17
1406 1501 7.038302 AGTGAACAGAGGGAGTAACATTGATTA 60.038 37.037 0.00 0.00 0.00 1.75
1408 1503 5.249393 AGTGAACAGAGGGAGTAACATTGAT 59.751 40.000 0.00 0.00 0.00 2.57
1410 1505 4.899502 AGTGAACAGAGGGAGTAACATTG 58.100 43.478 0.00 0.00 0.00 2.82
1411 1506 5.568620 AAGTGAACAGAGGGAGTAACATT 57.431 39.130 0.00 0.00 0.00 2.71
1413 1508 5.367945 AAAAGTGAACAGAGGGAGTAACA 57.632 39.130 0.00 0.00 0.00 2.41
1415 1510 8.319146 CCTTATAAAAGTGAACAGAGGGAGTAA 58.681 37.037 0.00 0.00 0.00 2.24
1417 1512 6.500751 TCCTTATAAAAGTGAACAGAGGGAGT 59.499 38.462 0.00 0.00 0.00 3.85
1418 1513 6.819146 GTCCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 0.00 4.30
1419 1514 6.271391 TGTCCTTATAAAAGTGAACAGAGGGA 59.729 38.462 0.00 0.00 0.00 4.20
1420 1515 6.371825 GTGTCCTTATAAAAGTGAACAGAGGG 59.628 42.308 0.00 0.00 0.00 4.30
1421 1516 7.162082 AGTGTCCTTATAAAAGTGAACAGAGG 58.838 38.462 0.00 0.00 0.00 3.69
1423 1518 8.208224 TGAAGTGTCCTTATAAAAGTGAACAGA 58.792 33.333 0.00 0.00 0.00 3.41
1424 1519 8.378172 TGAAGTGTCCTTATAAAAGTGAACAG 57.622 34.615 0.00 0.00 0.00 3.16
1426 1521 8.496751 GTCTGAAGTGTCCTTATAAAAGTGAAC 58.503 37.037 0.00 0.00 0.00 3.18
1427 1522 8.208224 TGTCTGAAGTGTCCTTATAAAAGTGAA 58.792 33.333 0.00 0.00 0.00 3.18
1428 1523 7.732025 TGTCTGAAGTGTCCTTATAAAAGTGA 58.268 34.615 0.00 0.00 0.00 3.41
1429 1524 7.360438 GCTGTCTGAAGTGTCCTTATAAAAGTG 60.360 40.741 0.00 0.00 0.00 3.16
1430 1525 6.651225 GCTGTCTGAAGTGTCCTTATAAAAGT 59.349 38.462 0.00 0.00 0.00 2.66
1431 1526 6.183360 CGCTGTCTGAAGTGTCCTTATAAAAG 60.183 42.308 0.00 0.00 0.00 2.27
1432 1527 5.637810 CGCTGTCTGAAGTGTCCTTATAAAA 59.362 40.000 0.00 0.00 0.00 1.52
1433 1528 5.168569 CGCTGTCTGAAGTGTCCTTATAAA 58.831 41.667 0.00 0.00 0.00 1.40
1434 1529 4.219944 ACGCTGTCTGAAGTGTCCTTATAA 59.780 41.667 0.00 0.00 36.11 0.98
1435 1530 3.762288 ACGCTGTCTGAAGTGTCCTTATA 59.238 43.478 0.00 0.00 36.11 0.98
1436 1531 2.563179 ACGCTGTCTGAAGTGTCCTTAT 59.437 45.455 0.00 0.00 36.11 1.73
1437 1532 1.961394 ACGCTGTCTGAAGTGTCCTTA 59.039 47.619 0.00 0.00 36.11 2.69
1438 1533 0.753262 ACGCTGTCTGAAGTGTCCTT 59.247 50.000 0.00 0.00 36.11 3.36
1439 1534 0.032678 CACGCTGTCTGAAGTGTCCT 59.967 55.000 4.00 0.00 38.84 3.85
1440 1535 1.560860 GCACGCTGTCTGAAGTGTCC 61.561 60.000 4.00 0.00 38.84 4.02
1441 1536 0.875908 TGCACGCTGTCTGAAGTGTC 60.876 55.000 0.00 2.16 38.84 3.67
1442 1537 0.461870 TTGCACGCTGTCTGAAGTGT 60.462 50.000 0.00 3.98 41.53 3.55
1443 1538 0.657312 TTTGCACGCTGTCTGAAGTG 59.343 50.000 0.00 0.00 37.63 3.16
1444 1539 1.064060 GTTTTGCACGCTGTCTGAAGT 59.936 47.619 0.00 0.00 0.00 3.01
1445 1540 1.063912 TGTTTTGCACGCTGTCTGAAG 59.936 47.619 0.00 0.00 0.00 3.02
1446 1541 1.063912 CTGTTTTGCACGCTGTCTGAA 59.936 47.619 0.00 0.00 0.00 3.02
1447 1542 0.657312 CTGTTTTGCACGCTGTCTGA 59.343 50.000 0.00 0.00 0.00 3.27
1448 1543 0.931662 GCTGTTTTGCACGCTGTCTG 60.932 55.000 0.00 0.00 0.00 3.51
1449 1544 1.097547 AGCTGTTTTGCACGCTGTCT 61.098 50.000 0.00 0.00 32.88 3.41
1450 1545 0.658536 GAGCTGTTTTGCACGCTGTC 60.659 55.000 0.00 0.00 33.77 3.51
1451 1546 1.356624 GAGCTGTTTTGCACGCTGT 59.643 52.632 0.00 0.00 33.77 4.40
1452 1547 0.248580 TTGAGCTGTTTTGCACGCTG 60.249 50.000 0.00 0.00 33.77 5.18
1453 1548 0.670162 ATTGAGCTGTTTTGCACGCT 59.330 45.000 0.00 0.00 35.40 5.07
1454 1549 1.490621 AATTGAGCTGTTTTGCACGC 58.509 45.000 0.00 0.00 34.99 5.34
1455 1550 3.114809 TGAAATTGAGCTGTTTTGCACG 58.885 40.909 0.00 0.00 34.99 5.34
1456 1551 4.114794 ACTGAAATTGAGCTGTTTTGCAC 58.885 39.130 0.00 0.00 34.99 4.57
1457 1552 4.389890 ACTGAAATTGAGCTGTTTTGCA 57.610 36.364 0.00 0.00 34.99 4.08
1458 1553 4.567959 ACAACTGAAATTGAGCTGTTTTGC 59.432 37.500 0.00 0.00 33.57 3.68
1459 1554 6.020121 CAGACAACTGAAATTGAGCTGTTTTG 60.020 38.462 0.00 0.00 46.03 2.44
1460 1555 6.038356 CAGACAACTGAAATTGAGCTGTTTT 58.962 36.000 0.00 0.00 46.03 2.43
1461 1556 5.585390 CAGACAACTGAAATTGAGCTGTTT 58.415 37.500 0.00 0.00 46.03 2.83
1462 1557 5.179045 CAGACAACTGAAATTGAGCTGTT 57.821 39.130 0.00 0.00 46.03 3.16
1463 1558 4.825546 CAGACAACTGAAATTGAGCTGT 57.174 40.909 0.00 0.00 46.03 4.40
1475 1570 7.170998 ACTTTTATAGGTCGTTTCAGACAACTG 59.829 37.037 0.00 0.00 42.62 3.16
1476 1571 7.170998 CACTTTTATAGGTCGTTTCAGACAACT 59.829 37.037 0.00 0.00 42.62 3.16
1477 1572 7.170320 TCACTTTTATAGGTCGTTTCAGACAAC 59.830 37.037 0.00 0.00 42.62 3.32
1478 1573 7.211573 TCACTTTTATAGGTCGTTTCAGACAA 58.788 34.615 0.00 0.00 42.62 3.18
1479 1574 6.751157 TCACTTTTATAGGTCGTTTCAGACA 58.249 36.000 0.00 0.00 42.62 3.41
1480 1575 7.647907 TTCACTTTTATAGGTCGTTTCAGAC 57.352 36.000 0.00 0.00 40.25 3.51
1481 1576 7.386848 CCTTTCACTTTTATAGGTCGTTTCAGA 59.613 37.037 0.00 0.00 0.00 3.27
1482 1577 7.386848 TCCTTTCACTTTTATAGGTCGTTTCAG 59.613 37.037 0.00 0.00 0.00 3.02
1483 1578 7.218614 TCCTTTCACTTTTATAGGTCGTTTCA 58.781 34.615 0.00 0.00 0.00 2.69
1484 1579 7.662604 TCCTTTCACTTTTATAGGTCGTTTC 57.337 36.000 0.00 0.00 0.00 2.78
1485 1580 7.174426 CCTTCCTTTCACTTTTATAGGTCGTTT 59.826 37.037 0.00 0.00 0.00 3.60
1486 1581 6.653740 CCTTCCTTTCACTTTTATAGGTCGTT 59.346 38.462 0.00 0.00 0.00 3.85
1487 1582 6.013984 TCCTTCCTTTCACTTTTATAGGTCGT 60.014 38.462 0.00 0.00 0.00 4.34
1488 1583 6.403878 TCCTTCCTTTCACTTTTATAGGTCG 58.596 40.000 0.00 0.00 0.00 4.79
1489 1584 7.395617 ACTCCTTCCTTTCACTTTTATAGGTC 58.604 38.462 0.00 0.00 0.00 3.85
1490 1585 7.331089 ACTCCTTCCTTTCACTTTTATAGGT 57.669 36.000 0.00 0.00 0.00 3.08
1491 1586 8.541234 ACTACTCCTTCCTTTCACTTTTATAGG 58.459 37.037 0.00 0.00 0.00 2.57
1492 1587 9.945904 AACTACTCCTTCCTTTCACTTTTATAG 57.054 33.333 0.00 0.00 0.00 1.31
1497 1592 9.945904 CTATAAACTACTCCTTCCTTTCACTTT 57.054 33.333 0.00 0.00 0.00 2.66
1498 1593 9.322769 TCTATAAACTACTCCTTCCTTTCACTT 57.677 33.333 0.00 0.00 0.00 3.16
1499 1594 8.896722 TCTATAAACTACTCCTTCCTTTCACT 57.103 34.615 0.00 0.00 0.00 3.41
1500 1595 9.589111 CTTCTATAAACTACTCCTTCCTTTCAC 57.411 37.037 0.00 0.00 0.00 3.18
1501 1596 8.258708 GCTTCTATAAACTACTCCTTCCTTTCA 58.741 37.037 0.00 0.00 0.00 2.69
1502 1597 7.711772 GGCTTCTATAAACTACTCCTTCCTTTC 59.288 40.741 0.00 0.00 0.00 2.62
1503 1598 7.182206 TGGCTTCTATAAACTACTCCTTCCTTT 59.818 37.037 0.00 0.00 0.00 3.11
1504 1599 6.672657 TGGCTTCTATAAACTACTCCTTCCTT 59.327 38.462 0.00 0.00 0.00 3.36
1505 1600 6.203072 TGGCTTCTATAAACTACTCCTTCCT 58.797 40.000 0.00 0.00 0.00 3.36
1506 1601 6.324254 TCTGGCTTCTATAAACTACTCCTTCC 59.676 42.308 0.00 0.00 0.00 3.46
1507 1602 7.349412 TCTGGCTTCTATAAACTACTCCTTC 57.651 40.000 0.00 0.00 0.00 3.46
1508 1603 7.147637 CCTTCTGGCTTCTATAAACTACTCCTT 60.148 40.741 0.00 0.00 0.00 3.36
1509 1604 6.325286 CCTTCTGGCTTCTATAAACTACTCCT 59.675 42.308 0.00 0.00 0.00 3.69
1510 1605 6.463190 CCCTTCTGGCTTCTATAAACTACTCC 60.463 46.154 0.00 0.00 0.00 3.85
1511 1606 6.463190 CCCCTTCTGGCTTCTATAAACTACTC 60.463 46.154 0.00 0.00 0.00 2.59
1512 1607 5.367060 CCCCTTCTGGCTTCTATAAACTACT 59.633 44.000 0.00 0.00 0.00 2.57
1513 1608 5.365895 TCCCCTTCTGGCTTCTATAAACTAC 59.634 44.000 0.00 0.00 0.00 2.73
1520 1615 2.877154 TCTCCCCTTCTGGCTTCTAT 57.123 50.000 0.00 0.00 0.00 1.98
1533 1788 5.202004 TCTATCTACTTCACACTTCTCCCC 58.798 45.833 0.00 0.00 0.00 4.81
1551 1806 2.921754 CGGAAACACCACGAACTCTATC 59.078 50.000 0.00 0.00 38.90 2.08
1552 1807 2.929592 GCGGAAACACCACGAACTCTAT 60.930 50.000 0.00 0.00 38.90 1.98
1554 1809 0.878961 GCGGAAACACCACGAACTCT 60.879 55.000 0.00 0.00 38.90 3.24
1555 1810 1.155424 TGCGGAAACACCACGAACTC 61.155 55.000 0.00 0.00 38.90 3.01
1556 1811 0.745128 TTGCGGAAACACCACGAACT 60.745 50.000 0.00 0.00 38.90 3.01
1557 1812 0.309612 ATTGCGGAAACACCACGAAC 59.690 50.000 0.00 0.00 38.90 3.95
1558 1813 1.880271 TATTGCGGAAACACCACGAA 58.120 45.000 0.00 0.00 38.90 3.85
1559 1814 1.880271 TTATTGCGGAAACACCACGA 58.120 45.000 0.00 0.00 38.90 4.35
1560 1815 2.690173 TTTATTGCGGAAACACCACG 57.310 45.000 0.00 0.00 38.90 4.94
1582 1837 5.244178 ACTTCTCACCACGAACTCTATCTTT 59.756 40.000 0.00 0.00 0.00 2.52
1608 1992 1.674441 ACATTGCATGAATCGCTCAGG 59.326 47.619 0.00 0.00 37.52 3.86
1613 1998 2.187707 GACCAACATTGCATGAATCGC 58.812 47.619 0.00 0.00 0.00 4.58
1653 2038 3.524095 TGAACATGACCTCCCAAATGT 57.476 42.857 0.00 0.00 34.79 2.71
1668 2054 0.396435 AGGAACTCGCCACATGAACA 59.604 50.000 0.00 0.00 0.00 3.18
1718 2104 9.471702 GGGTACATATGCTAGGACTATACTTAA 57.528 37.037 1.58 0.00 0.00 1.85
1724 2110 7.873699 AAAAGGGTACATATGCTAGGACTAT 57.126 36.000 1.58 0.00 0.00 2.12
1729 2115 9.959721 AACATATAAAAGGGTACATATGCTAGG 57.040 33.333 1.58 0.00 35.63 3.02
1749 2135 9.461312 TTGTTCCTTTAGCAACTCATAACATAT 57.539 29.630 0.00 0.00 0.00 1.78
1751 2137 7.759489 TTGTTCCTTTAGCAACTCATAACAT 57.241 32.000 0.00 0.00 0.00 2.71
1752 2138 7.446931 TGATTGTTCCTTTAGCAACTCATAACA 59.553 33.333 0.00 0.00 30.44 2.41
1753 2139 7.750903 GTGATTGTTCCTTTAGCAACTCATAAC 59.249 37.037 0.00 0.00 30.44 1.89
1756 2142 5.769662 TGTGATTGTTCCTTTAGCAACTCAT 59.230 36.000 0.00 0.00 30.44 2.90
1758 2144 5.239525 ACTGTGATTGTTCCTTTAGCAACTC 59.760 40.000 0.00 0.00 30.44 3.01
1761 2170 5.359576 ACAACTGTGATTGTTCCTTTAGCAA 59.640 36.000 0.00 0.00 39.86 3.91
1763 2172 5.438761 ACAACTGTGATTGTTCCTTTAGC 57.561 39.130 0.00 0.00 39.86 3.09
1829 2238 9.273016 CCTTCTCTTTTATACTTGAAACTCACA 57.727 33.333 0.00 0.00 0.00 3.58
1830 2239 8.722394 CCCTTCTCTTTTATACTTGAAACTCAC 58.278 37.037 0.00 0.00 0.00 3.51
1831 2240 8.656806 TCCCTTCTCTTTTATACTTGAAACTCA 58.343 33.333 0.00 0.00 0.00 3.41
1832 2241 9.674068 ATCCCTTCTCTTTTATACTTGAAACTC 57.326 33.333 0.00 0.00 0.00 3.01
1845 2254 6.707608 GCACAATTCAAAATCCCTTCTCTTTT 59.292 34.615 0.00 0.00 0.00 2.27
1851 2260 6.866010 AAAAGCACAATTCAAAATCCCTTC 57.134 33.333 0.00 0.00 0.00 3.46
1899 2308 9.725019 TGCAAGGAAGTAATTCGATATTATCAT 57.275 29.630 4.63 0.00 0.00 2.45
1978 2387 9.180678 CTGTACCAAAAACTGAATATCAACAAC 57.819 33.333 0.00 0.00 0.00 3.32
1980 2389 8.458573 ACTGTACCAAAAACTGAATATCAACA 57.541 30.769 0.00 0.00 0.00 3.33
2032 2446 6.207417 CCCAGTGTCATGTTAAGTCAAAAGAT 59.793 38.462 0.00 0.00 0.00 2.40
2057 2471 7.807977 TCAGAGCCTAATCACCATAAAAATC 57.192 36.000 0.00 0.00 0.00 2.17
2066 2480 4.133078 CCAGATTTCAGAGCCTAATCACC 58.867 47.826 0.00 0.00 32.11 4.02
2068 2482 3.137176 CCCCAGATTTCAGAGCCTAATCA 59.863 47.826 0.00 0.00 32.11 2.57
2069 2483 3.392616 TCCCCAGATTTCAGAGCCTAATC 59.607 47.826 0.00 0.00 0.00 1.75
2131 2545 0.940126 CCAAGCTAATAGCCGTGCTG 59.060 55.000 8.88 0.00 43.77 4.41
2176 2590 3.091545 AGGAATAACAACATGGCACCTG 58.908 45.455 0.00 0.00 0.00 4.00
2230 2644 6.147821 ACACCAAGAATTCTCGAACATAACAG 59.852 38.462 8.78 0.00 0.00 3.16
2233 2647 7.383687 AGTACACCAAGAATTCTCGAACATAA 58.616 34.615 8.78 0.00 0.00 1.90
2235 2649 5.794894 AGTACACCAAGAATTCTCGAACAT 58.205 37.500 8.78 0.00 0.00 2.71
2261 2675 0.613260 ACGGCAGCAGAATGTCCTAA 59.387 50.000 0.00 0.00 39.31 2.69
2263 2677 0.176680 CTACGGCAGCAGAATGTCCT 59.823 55.000 0.00 0.00 39.31 3.85
2278 2692 4.124851 AGTAGAAATTCAGGGTGCTACG 57.875 45.455 0.00 0.00 34.85 3.51
2285 2699 7.693969 AGACAATTCAAGTAGAAATTCAGGG 57.306 36.000 0.00 0.00 40.22 4.45
2288 2702 9.734620 CAACAAGACAATTCAAGTAGAAATTCA 57.265 29.630 0.00 0.00 40.22 2.57
2351 2765 2.101582 CCTGATTTCAGACCCGGTCTAG 59.898 54.545 20.04 12.12 46.59 2.43
2358 2772 3.703001 TGAGAACCTGATTTCAGACCC 57.297 47.619 9.15 0.00 46.59 4.46
2373 2787 0.039618 GGTCTTGGGCCCATTGAGAA 59.960 55.000 29.23 8.68 0.00 2.87
2379 2795 0.846693 GTGATAGGTCTTGGGCCCAT 59.153 55.000 29.23 13.57 0.00 4.00
2517 2933 2.397044 ATCCAACCAGGCCTGAAAAA 57.603 45.000 34.91 15.16 37.29 1.94
2584 3000 6.815089 ACATAAGCAACAAACAGGATTGAAA 58.185 32.000 0.00 0.00 34.38 2.69
2629 3045 5.443185 TGAGACTGGAAAGCAATCTTTTG 57.557 39.130 0.00 0.00 42.24 2.44
2630 3046 6.469782 TTTGAGACTGGAAAGCAATCTTTT 57.530 33.333 0.00 0.00 42.24 2.27
2785 3201 5.648092 AGGCTGAACCATTAGTTTGTATGTC 59.352 40.000 0.00 0.00 43.14 3.06
2894 3310 3.142174 CCCTTCGAATCAGAATTAGGGC 58.858 50.000 0.00 0.00 33.50 5.19
2910 3326 2.554462 GTCAGCAAAGAAACCTCCCTTC 59.446 50.000 0.00 0.00 0.00 3.46
2957 3373 1.665679 CAGTCCATTCGTAATGCGCTT 59.334 47.619 9.73 0.00 41.07 4.68
3420 3837 7.716799 TCCATAACTGCTGGTCAATAAAAAT 57.283 32.000 0.00 0.00 35.19 1.82
3428 3845 3.455910 AGCTATTCCATAACTGCTGGTCA 59.544 43.478 0.00 0.00 35.19 4.02
3466 3886 2.540101 GCATAGTACAGGAATCGCACAC 59.460 50.000 0.00 0.00 0.00 3.82
3483 3903 1.202867 TGTGTGGCTTGGAACTGCATA 60.203 47.619 0.00 0.00 0.00 3.14
3508 3928 7.397221 ACACCAATAGATTGAGTCATTCTTCA 58.603 34.615 19.70 6.45 40.14 3.02
3509 3929 7.856145 ACACCAATAGATTGAGTCATTCTTC 57.144 36.000 19.70 4.31 40.14 2.87
3571 4151 2.609459 GCTAGAACAACGCTGTGCATAT 59.391 45.455 0.00 0.00 35.37 1.78
3578 4158 4.928661 AATAACTGCTAGAACAACGCTG 57.071 40.909 0.00 0.00 0.00 5.18
3663 4248 6.036470 GCTAATTGGTTGATCAGTTAAAGGC 58.964 40.000 0.00 0.00 0.00 4.35
3672 4257 5.378230 AGATCAGGCTAATTGGTTGATCA 57.622 39.130 25.34 0.00 44.02 2.92
3685 4270 6.521527 AGGGAAATATTACAAGATCAGGCT 57.478 37.500 0.00 0.00 0.00 4.58
3730 4317 8.170730 GGACCCAATAACCCAAGAGATAATATT 58.829 37.037 0.00 0.00 0.00 1.28
3731 4318 7.257419 GGGACCCAATAACCCAAGAGATAATAT 60.257 40.741 5.33 0.00 42.81 1.28
3738 4325 1.923148 AGGGACCCAATAACCCAAGAG 59.077 52.381 14.60 0.00 45.43 2.85
3864 4451 3.952323 CGGAGGGAGTATGTAAGTCTTCA 59.048 47.826 0.00 0.00 0.00 3.02
3874 4461 3.225177 TCTAGGAACGGAGGGAGTATG 57.775 52.381 0.00 0.00 0.00 2.39
3925 4512 2.036733 GCAATACACCCTATAGTCCGCA 59.963 50.000 0.00 0.00 0.00 5.69
3926 4513 2.612221 GGCAATACACCCTATAGTCCGC 60.612 54.545 0.00 0.00 0.00 5.54
3931 4520 5.885912 ACAACAAAGGCAATACACCCTATAG 59.114 40.000 0.00 0.00 0.00 1.31
4035 4625 1.406903 GCTCCCCTTCAAATCATGGG 58.593 55.000 0.00 0.00 39.37 4.00
4047 4637 3.655211 CTGTGCCAAGGCTCCCCT 61.655 66.667 12.96 0.00 45.77 4.79
4051 4641 3.605749 TACCGCTGTGCCAAGGCTC 62.606 63.158 12.96 9.45 42.51 4.70
4054 4644 1.875963 CTTTACCGCTGTGCCAAGG 59.124 57.895 0.00 0.00 0.00 3.61
4055 4645 1.210155 GCTTTACCGCTGTGCCAAG 59.790 57.895 0.00 0.00 0.00 3.61
4056 4646 1.228124 AGCTTTACCGCTGTGCCAA 60.228 52.632 0.00 0.00 39.16 4.52
4065 4655 0.951558 ACAAGGCAACAGCTTTACCG 59.048 50.000 0.00 0.00 41.41 4.02
4067 4657 2.287608 GGTCACAAGGCAACAGCTTTAC 60.288 50.000 0.00 0.00 41.41 2.01
4068 4658 1.953686 GGTCACAAGGCAACAGCTTTA 59.046 47.619 0.00 0.00 41.41 1.85
4069 4659 0.746659 GGTCACAAGGCAACAGCTTT 59.253 50.000 0.00 0.00 41.41 3.51
4070 4660 0.395586 TGGTCACAAGGCAACAGCTT 60.396 50.000 0.00 0.00 41.41 3.74
4072 4662 0.038892 CATGGTCACAAGGCAACAGC 60.039 55.000 0.00 0.00 41.41 4.40
4073 4663 1.538512 CTCATGGTCACAAGGCAACAG 59.461 52.381 0.00 0.00 41.41 3.16
4075 4665 0.883833 CCTCATGGTCACAAGGCAAC 59.116 55.000 0.00 0.00 0.00 4.17
4089 4679 1.546476 GACTCGAACCTGTGACCTCAT 59.454 52.381 0.00 0.00 0.00 2.90
4091 4681 0.244178 GGACTCGAACCTGTGACCTC 59.756 60.000 1.64 0.00 0.00 3.85
4092 4682 1.186267 GGGACTCGAACCTGTGACCT 61.186 60.000 7.98 0.00 0.00 3.85
4093 4683 1.292541 GGGACTCGAACCTGTGACC 59.707 63.158 7.98 0.00 0.00 4.02
4094 4684 1.080705 CGGGACTCGAACCTGTGAC 60.081 63.158 8.47 0.00 42.43 3.67
4095 4685 2.273179 CCGGGACTCGAACCTGTGA 61.273 63.158 13.70 0.00 42.43 3.58
4096 4686 1.812686 TTCCGGGACTCGAACCTGTG 61.813 60.000 0.00 7.45 42.43 3.66
4098 4688 0.669625 GTTTCCGGGACTCGAACCTG 60.670 60.000 0.00 9.41 42.43 4.00
4099 4689 1.117142 TGTTTCCGGGACTCGAACCT 61.117 55.000 0.00 0.00 42.43 3.50
4100 4690 0.669625 CTGTTTCCGGGACTCGAACC 60.670 60.000 0.00 0.28 42.43 3.62
4101 4691 1.289800 GCTGTTTCCGGGACTCGAAC 61.290 60.000 0.00 0.00 42.43 3.95
4102 4692 1.005394 GCTGTTTCCGGGACTCGAA 60.005 57.895 0.00 0.00 42.43 3.71
4103 4693 2.654877 GCTGTTTCCGGGACTCGA 59.345 61.111 0.00 0.00 42.43 4.04
4104 4694 2.434359 GGCTGTTTCCGGGACTCG 60.434 66.667 0.00 0.00 38.88 4.18
4105 4695 1.079057 GAGGCTGTTTCCGGGACTC 60.079 63.158 0.00 0.00 0.00 3.36
4106 4696 1.128188 AAGAGGCTGTTTCCGGGACT 61.128 55.000 0.00 0.00 0.00 3.85
4107 4697 0.955919 CAAGAGGCTGTTTCCGGGAC 60.956 60.000 0.00 1.11 0.00 4.46
4109 4699 2.335712 GCAAGAGGCTGTTTCCGGG 61.336 63.158 0.00 0.00 40.25 5.73
4110 4700 1.580845 CTGCAAGAGGCTGTTTCCGG 61.581 60.000 0.00 0.00 45.15 5.14
4111 4701 0.603707 TCTGCAAGAGGCTGTTTCCG 60.604 55.000 0.00 0.00 38.67 4.30
4112 4702 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
4127 4717 1.203994 CAGCCTTTCCCTGCATTTCTG 59.796 52.381 0.00 0.00 0.00 3.02
4128 4718 1.203100 ACAGCCTTTCCCTGCATTTCT 60.203 47.619 0.00 0.00 33.65 2.52
4129 4719 1.067354 CACAGCCTTTCCCTGCATTTC 60.067 52.381 0.00 0.00 33.65 2.17
4134 4724 0.036875 AGTACACAGCCTTTCCCTGC 59.963 55.000 0.00 0.00 33.65 4.85
4135 4725 3.914426 ATAGTACACAGCCTTTCCCTG 57.086 47.619 0.00 0.00 36.41 4.45
4137 4727 4.404715 TGTCTATAGTACACAGCCTTTCCC 59.595 45.833 0.00 0.00 0.00 3.97
4138 4728 5.349809 GTGTCTATAGTACACAGCCTTTCC 58.650 45.833 20.99 1.84 45.26 3.13
4147 4737 5.798934 CGACCACTTTGTGTCTATAGTACAC 59.201 44.000 19.93 19.93 45.96 2.90
4149 4739 5.124457 TCCGACCACTTTGTGTCTATAGTAC 59.876 44.000 0.00 1.68 0.00 2.73
4150 4740 5.124457 GTCCGACCACTTTGTGTCTATAGTA 59.876 44.000 0.00 0.00 0.00 1.82
4151 4741 4.082354 GTCCGACCACTTTGTGTCTATAGT 60.082 45.833 0.00 0.00 0.00 2.12
4152 4742 4.421948 GTCCGACCACTTTGTGTCTATAG 58.578 47.826 0.00 0.00 0.00 1.31
4153 4743 3.194116 GGTCCGACCACTTTGTGTCTATA 59.806 47.826 13.05 0.00 38.42 1.31
4154 4744 2.028385 GGTCCGACCACTTTGTGTCTAT 60.028 50.000 13.05 0.00 38.42 1.98
4155 4745 1.342174 GGTCCGACCACTTTGTGTCTA 59.658 52.381 13.05 0.00 38.42 2.59
4156 4746 0.106149 GGTCCGACCACTTTGTGTCT 59.894 55.000 13.05 0.00 38.42 3.41
4157 4747 0.883370 GGGTCCGACCACTTTGTGTC 60.883 60.000 19.43 0.00 41.02 3.67
4158 4748 1.147600 GGGTCCGACCACTTTGTGT 59.852 57.895 19.43 0.00 41.02 3.72
4159 4749 0.884704 CAGGGTCCGACCACTTTGTG 60.885 60.000 19.43 2.96 41.02 3.33
4160 4750 1.450211 CAGGGTCCGACCACTTTGT 59.550 57.895 19.43 0.00 41.02 2.83
4161 4751 1.966451 GCAGGGTCCGACCACTTTG 60.966 63.158 19.43 11.88 41.02 2.77
4162 4752 2.430367 GCAGGGTCCGACCACTTT 59.570 61.111 19.43 0.00 41.02 2.66
4163 4753 4.003788 CGCAGGGTCCGACCACTT 62.004 66.667 19.43 1.42 41.02 3.16
4176 4766 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4179 4769 4.796231 ACGTAGCTCCCGCTTGCG 62.796 66.667 8.14 8.14 46.47 4.85
4180 4770 3.188786 CACGTAGCTCCCGCTTGC 61.189 66.667 5.69 0.00 46.47 4.01
4181 4771 3.188786 GCACGTAGCTCCCGCTTG 61.189 66.667 5.69 0.00 46.47 4.01
4182 4772 3.691342 TGCACGTAGCTCCCGCTT 61.691 61.111 10.54 0.00 46.47 4.68
4198 4788 1.463553 AAAAAGAAGGCAGCCCGGTG 61.464 55.000 8.22 0.00 35.76 4.94
4199 4789 0.111639 TAAAAAGAAGGCAGCCCGGT 59.888 50.000 8.22 0.00 35.76 5.28
4200 4790 0.526211 GTAAAAAGAAGGCAGCCCGG 59.474 55.000 8.22 0.00 35.76 5.73
4201 4791 1.468914 GAGTAAAAAGAAGGCAGCCCG 59.531 52.381 8.22 0.00 35.76 6.13
4202 4792 1.819288 GGAGTAAAAAGAAGGCAGCCC 59.181 52.381 8.22 0.00 0.00 5.19
4203 4793 1.819288 GGGAGTAAAAAGAAGGCAGCC 59.181 52.381 1.84 1.84 0.00 4.85
4204 4794 2.489722 CTGGGAGTAAAAAGAAGGCAGC 59.510 50.000 0.00 0.00 0.00 5.25
4205 4795 2.489722 GCTGGGAGTAAAAAGAAGGCAG 59.510 50.000 0.00 0.00 0.00 4.85
4206 4796 2.514803 GCTGGGAGTAAAAAGAAGGCA 58.485 47.619 0.00 0.00 0.00 4.75
4207 4797 1.819288 GGCTGGGAGTAAAAAGAAGGC 59.181 52.381 0.00 0.00 0.00 4.35
4208 4798 3.154827 TGGCTGGGAGTAAAAAGAAGG 57.845 47.619 0.00 0.00 0.00 3.46
4209 4799 4.335416 TCATGGCTGGGAGTAAAAAGAAG 58.665 43.478 0.00 0.00 0.00 2.85
4210 4800 4.380843 TCATGGCTGGGAGTAAAAAGAA 57.619 40.909 0.00 0.00 0.00 2.52
4211 4801 4.591321 ATCATGGCTGGGAGTAAAAAGA 57.409 40.909 0.00 0.00 0.00 2.52
4212 4802 5.185635 TGAAATCATGGCTGGGAGTAAAAAG 59.814 40.000 0.00 0.00 0.00 2.27
4213 4803 5.083122 TGAAATCATGGCTGGGAGTAAAAA 58.917 37.500 0.00 0.00 0.00 1.94
4214 4804 4.671831 TGAAATCATGGCTGGGAGTAAAA 58.328 39.130 0.00 0.00 0.00 1.52
4215 4805 4.314522 TGAAATCATGGCTGGGAGTAAA 57.685 40.909 0.00 0.00 0.00 2.01
4216 4806 4.524802 ATGAAATCATGGCTGGGAGTAA 57.475 40.909 0.00 0.00 34.83 2.24
4239 4829 1.833630 CTCTACCAATCAGCTCCCACA 59.166 52.381 0.00 0.00 0.00 4.17
4256 4846 5.304357 CCTTTGTTGTCAATTTTACCCCTCT 59.696 40.000 0.00 0.00 33.32 3.69
4317 4907 7.404104 TCCGTTCCTAGATATAGGGTGTATAGA 59.596 40.741 13.45 0.03 37.81 1.98
4369 4961 4.625742 CGAACTTTCCATCAACTATCACGT 59.374 41.667 0.00 0.00 0.00 4.49
4434 5034 6.599244 GTCAGATGGATGGAAGTATTTTCACA 59.401 38.462 0.00 0.00 0.00 3.58
4627 5227 8.814235 GCCAAATATTCATCATTGAAGAACTTG 58.186 33.333 6.48 9.88 44.75 3.16
4685 5285 8.519799 AGTTTTTACTGATCAAGAAACTCCAA 57.480 30.769 14.59 1.92 33.46 3.53
4758 5358 3.306166 ACTCGTCAACTGTTTTCAAGACG 59.694 43.478 18.54 18.54 43.84 4.18
4762 5362 4.452795 TGTTCACTCGTCAACTGTTTTCAA 59.547 37.500 0.00 0.00 0.00 2.69
4855 5455 0.744771 GGAACCTTCGATCAGGGTGC 60.745 60.000 8.03 2.48 38.42 5.01
4862 5462 2.761208 TCTTCCAGAGGAACCTTCGATC 59.239 50.000 0.00 0.00 36.71 3.69
4865 5465 4.946478 ATATCTTCCAGAGGAACCTTCG 57.054 45.455 0.00 0.00 36.71 3.79
4957 5557 7.917505 AGAAAAACAAGAAGATTTGCAGTGTAG 59.082 33.333 0.00 0.00 0.00 2.74
4988 5588 2.213499 ACTTGAGCAGTGTACAACAGC 58.787 47.619 0.00 1.89 41.42 4.40
5013 5613 9.758651 AAATAACTGCGTATACATAGATGAACA 57.241 29.630 3.32 0.00 0.00 3.18
5043 5643 9.527157 AGACAGTAGTAGCATAGATGATTGTAT 57.473 33.333 0.00 0.00 0.00 2.29
5077 5677 1.015109 GATGTGTGCTGCCATCTCAG 58.985 55.000 9.28 0.00 35.63 3.35
5121 5721 4.740695 GCGATGATCTGTTAGAACACCTAC 59.259 45.833 0.00 0.00 29.64 3.18
5241 5842 6.072175 GCATAACTTGTGGGTGTTCTGAAATA 60.072 38.462 0.00 0.00 0.00 1.40
5293 5900 3.031736 TGCACAATCTAGGAGGAGGTAC 58.968 50.000 0.00 0.00 0.00 3.34
5315 5922 1.180029 GAACTAGTGGCCGTGTAGGA 58.820 55.000 0.00 0.00 45.00 2.94
5317 5924 1.816835 TCAGAACTAGTGGCCGTGTAG 59.183 52.381 0.00 0.85 0.00 2.74
5326 5933 4.152526 CGAAGAAGTCGTCAGAACTAGTG 58.847 47.826 0.00 0.00 45.09 2.74
5473 6080 2.627217 GGAGGGGAGGAACATGTACTCT 60.627 54.545 22.41 11.36 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.