Multiple sequence alignment - TraesCS4A01G078800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G078800 chr4A 100.000 6925 0 0 1 6925 80146849 80139925 0.000000e+00 12789.0
1 TraesCS4A01G078800 chr4A 100.000 699 0 0 7149 7847 80139701 80139003 0.000000e+00 1291.0
2 TraesCS4A01G078800 chr4A 81.931 321 33 17 3232 3530 715637020 715637337 1.690000e-61 248.0
3 TraesCS4A01G078800 chr4A 81.931 321 33 17 3232 3530 715917379 715917062 1.690000e-61 248.0
4 TraesCS4A01G078800 chr4A 93.333 165 11 0 3915 4079 252243900 252243736 2.190000e-60 244.0
5 TraesCS4A01G078800 chr4A 92.135 89 7 0 615 703 615217749 615217661 8.270000e-25 126.0
6 TraesCS4A01G078800 chr4A 88.333 60 5 2 7286 7345 300446641 300446698 3.930000e-08 71.3
7 TraesCS4A01G078800 chr4A 100.000 34 0 0 5907 5940 80140910 80140877 6.570000e-06 63.9
8 TraesCS4A01G078800 chr4A 100.000 34 0 0 5940 5973 80140943 80140910 6.570000e-06 63.9
9 TraesCS4A01G078800 chr4B 96.714 5113 115 20 848 5940 507362415 507367494 0.000000e+00 8462.0
10 TraesCS4A01G078800 chr4B 97.883 992 14 3 5940 6925 507367461 507368451 0.000000e+00 1709.0
11 TraesCS4A01G078800 chr4B 90.500 200 5 2 334 533 507362122 507362307 1.310000e-62 252.0
12 TraesCS4A01G078800 chr4B 96.000 125 3 1 702 826 507362306 507362428 1.340000e-47 202.0
13 TraesCS4A01G078800 chr4B 84.821 112 17 0 7735 7846 613294671 613294560 6.440000e-21 113.0
14 TraesCS4A01G078800 chr4B 87.013 77 5 3 531 604 385955154 385955080 1.810000e-11 82.4
15 TraesCS4A01G078800 chr4D 96.819 2452 43 10 1230 3672 408577561 408575136 0.000000e+00 4063.0
16 TraesCS4A01G078800 chr4D 97.231 2275 40 9 3674 5940 408572911 408570652 0.000000e+00 3831.0
17 TraesCS4A01G078800 chr4D 98.079 989 15 2 5940 6925 408570685 408569698 0.000000e+00 1718.0
18 TraesCS4A01G078800 chr4D 85.192 547 55 13 7 533 408580549 408580009 8.960000e-149 538.0
19 TraesCS4A01G078800 chr4D 97.927 193 4 0 910 1102 408578281 408578089 1.260000e-87 335.0
20 TraesCS4A01G078800 chr4D 95.935 123 3 1 702 824 408580010 408579890 1.730000e-46 198.0
21 TraesCS4A01G078800 chr4D 90.217 92 9 0 612 703 26895868 26895777 3.850000e-23 121.0
22 TraesCS4A01G078800 chr4D 85.714 112 14 2 7465 7575 163708553 163708663 4.980000e-22 117.0
23 TraesCS4A01G078800 chr4D 78.289 152 32 1 131 282 96210686 96210536 6.480000e-16 97.1
24 TraesCS4A01G078800 chr4D 86.842 76 6 1 7149 7224 408569716 408569645 1.810000e-11 82.4
25 TraesCS4A01G078800 chr5D 92.398 1710 104 15 958 2655 82179797 82181492 0.000000e+00 2414.0
26 TraesCS4A01G078800 chr5D 89.105 1900 142 37 4075 5937 82182780 82184651 0.000000e+00 2302.0
27 TraesCS4A01G078800 chr5D 86.974 1213 118 27 2710 3912 82181595 82182777 0.000000e+00 1328.0
28 TraesCS4A01G078800 chr5D 90.519 1002 81 8 5936 6925 82184617 82185616 0.000000e+00 1312.0
29 TraesCS4A01G078800 chr5D 95.732 164 7 0 3914 4077 198954906 198955069 1.680000e-66 265.0
30 TraesCS4A01G078800 chr5D 93.827 162 10 0 3915 4076 27354253 27354414 2.190000e-60 244.0
31 TraesCS4A01G078800 chr5D 92.453 53 1 1 7290 7339 354949675 354949727 1.090000e-08 73.1
32 TraesCS4A01G078800 chr5B 92.053 1724 109 17 958 2670 90499804 90501510 0.000000e+00 2399.0
33 TraesCS4A01G078800 chr5B 88.773 1915 138 37 4075 5945 90502562 90504443 0.000000e+00 2274.0
34 TraesCS4A01G078800 chr5B 90.329 1003 81 12 5936 6925 90504400 90505399 0.000000e+00 1301.0
35 TraesCS4A01G078800 chr5B 87.874 701 63 18 3222 3912 90501871 90502559 0.000000e+00 804.0
36 TraesCS4A01G078800 chr5B 86.757 370 36 10 2705 3072 90501509 90501867 4.410000e-107 399.0
37 TraesCS4A01G078800 chr5B 89.781 137 13 1 3395 3530 681001412 681001276 2.910000e-39 174.0
38 TraesCS4A01G078800 chr5B 79.182 269 25 13 3273 3530 415776424 415776672 2.930000e-34 158.0
39 TraesCS4A01G078800 chr5B 91.429 70 4 2 43 111 693039791 693039859 2.330000e-15 95.3
40 TraesCS4A01G078800 chr5A 91.657 1726 116 18 958 2670 78144496 78146206 0.000000e+00 2364.0
41 TraesCS4A01G078800 chr5A 89.155 1918 132 39 4075 5945 78153052 78154940 0.000000e+00 2320.0
42 TraesCS4A01G078800 chr5A 90.818 1002 77 10 5936 6925 78154897 78155895 0.000000e+00 1327.0
43 TraesCS4A01G078800 chr5A 87.263 895 84 23 2749 3625 78146223 78147105 0.000000e+00 994.0
44 TraesCS4A01G078800 chr5A 88.119 101 12 0 606 706 113610631 113610531 3.850000e-23 121.0
45 TraesCS4A01G078800 chr5A 88.462 52 5 1 177 227 662286263 662286314 2.360000e-05 62.1
46 TraesCS4A01G078800 chr6A 80.382 576 75 24 7290 7841 424796105 424795544 3.410000e-108 403.0
47 TraesCS4A01G078800 chr6A 78.528 326 60 5 7456 7777 457755940 457755621 1.030000e-48 206.0
48 TraesCS4A01G078800 chr6A 87.640 89 4 5 19 103 15787112 15787027 6.480000e-16 97.1
49 TraesCS4A01G078800 chr3B 81.764 499 56 20 7361 7841 748628192 748628673 1.240000e-102 385.0
50 TraesCS4A01G078800 chr3B 76.667 240 31 11 42 256 13951357 13951118 8.320000e-20 110.0
51 TraesCS4A01G078800 chr6D 79.878 492 82 8 7361 7845 354535601 354536082 2.100000e-90 344.0
52 TraesCS4A01G078800 chr6D 84.906 106 15 1 7456 7561 107817307 107817411 1.080000e-18 106.0
53 TraesCS4A01G078800 chr6D 90.141 71 7 0 7295 7365 354759526 354759596 8.380000e-15 93.5
54 TraesCS4A01G078800 chr6D 93.220 59 3 1 43 101 62200649 62200592 1.400000e-12 86.1
55 TraesCS4A01G078800 chr6D 93.182 44 3 0 184 227 41539639 41539682 1.830000e-06 65.8
56 TraesCS4A01G078800 chr3D 80.288 416 61 15 1938 2344 477626429 477626832 2.140000e-75 294.0
57 TraesCS4A01G078800 chr3D 79.710 138 26 2 7426 7562 453215705 453215841 1.800000e-16 99.0
58 TraesCS4A01G078800 chr3D 89.231 65 7 0 7302 7366 543918922 543918986 1.810000e-11 82.4
59 TraesCS4A01G078800 chr2D 80.299 401 69 4 7451 7845 560954204 560954600 2.140000e-75 294.0
60 TraesCS4A01G078800 chr2D 91.209 91 8 0 613 703 10049178 10049268 2.970000e-24 124.0
61 TraesCS4A01G078800 chr2D 93.548 62 4 0 45 106 14643813 14643874 8.380000e-15 93.5
62 TraesCS4A01G078800 chr2D 88.312 77 7 1 30 106 14438886 14438960 3.020000e-14 91.6
63 TraesCS4A01G078800 chr2D 92.500 40 3 0 234 273 529354353 529354392 3.060000e-04 58.4
64 TraesCS4A01G078800 chr1A 94.444 162 9 0 3915 4076 84012547 84012386 4.700000e-62 250.0
65 TraesCS4A01G078800 chr1A 89.781 137 13 1 3395 3530 575198342 575198478 2.910000e-39 174.0
66 TraesCS4A01G078800 chr1A 93.590 78 4 1 7290 7366 62830669 62830592 1.790000e-21 115.0
67 TraesCS4A01G078800 chr2B 94.410 161 9 0 3914 4074 115381524 115381684 1.690000e-61 248.0
68 TraesCS4A01G078800 chr2B 93.827 162 9 1 3915 4076 245730395 245730555 7.870000e-60 243.0
69 TraesCS4A01G078800 chr2B 81.212 165 29 2 118 281 73999592 73999429 1.780000e-26 132.0
70 TraesCS4A01G078800 chr2B 97.143 35 1 0 570 604 105753476 105753442 8.500000e-05 60.2
71 TraesCS4A01G078800 chr6B 92.398 171 13 0 3914 4084 36133666 36133496 2.190000e-60 244.0
72 TraesCS4A01G078800 chr6B 87.963 108 11 2 613 720 594447715 594447610 8.270000e-25 126.0
73 TraesCS4A01G078800 chr6B 91.209 91 8 0 613 703 98854383 98854293 2.970000e-24 124.0
74 TraesCS4A01G078800 chr6B 91.209 91 8 0 613 703 523343787 523343877 2.970000e-24 124.0
75 TraesCS4A01G078800 chr6B 84.375 64 9 1 542 604 544695535 544695472 2.360000e-05 62.1
76 TraesCS4A01G078800 chr7B 79.878 328 53 6 7455 7778 452966574 452966256 2.200000e-55 228.0
77 TraesCS4A01G078800 chr7B 91.209 91 8 0 613 703 611709397 611709487 2.970000e-24 124.0
78 TraesCS4A01G078800 chrUn 84.753 223 28 6 2718 2938 88801975 88802193 1.330000e-52 219.0
79 TraesCS4A01G078800 chr7A 73.453 501 106 12 7361 7846 520892051 520891563 6.300000e-36 163.0
80 TraesCS4A01G078800 chr7A 78.027 223 32 8 7628 7846 191288663 191288454 2.970000e-24 124.0
81 TraesCS4A01G078800 chr2A 78.800 250 29 8 3273 3519 67464894 67465122 6.350000e-31 147.0
82 TraesCS4A01G078800 chr2A 81.188 101 10 6 18 111 5688918 5688820 1.090000e-08 73.1
83 TraesCS4A01G078800 chr2A 83.784 74 11 1 532 604 82209051 82208978 1.410000e-07 69.4
84 TraesCS4A01G078800 chr7D 91.209 91 8 0 613 703 4806990 4806900 2.970000e-24 124.0
85 TraesCS4A01G078800 chr7D 83.051 118 20 0 165 282 26655365 26655248 2.990000e-19 108.0
86 TraesCS4A01G078800 chr1D 87.755 98 11 1 7465 7562 408970001 408969905 6.440000e-21 113.0
87 TraesCS4A01G078800 chr1D 84.545 110 13 3 7465 7574 322072716 322072611 1.080000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G078800 chr4A 80139003 80146849 7846 True 7040.000000 12789 100.000000 1 7847 2 chr4A.!!$R4 7846
1 TraesCS4A01G078800 chr4B 507362122 507368451 6329 False 2656.250000 8462 95.274250 334 6925 4 chr4B.!!$F1 6591
2 TraesCS4A01G078800 chr4D 408569645 408580549 10904 True 1537.914286 4063 94.003571 7 7224 7 chr4D.!!$R3 7217
3 TraesCS4A01G078800 chr5D 82179797 82185616 5819 False 1839.000000 2414 89.749000 958 6925 4 chr5D.!!$F4 5967
4 TraesCS4A01G078800 chr5B 90499804 90505399 5595 False 1435.400000 2399 89.157200 958 6925 5 chr5B.!!$F3 5967
5 TraesCS4A01G078800 chr5A 78153052 78155895 2843 False 1823.500000 2320 89.986500 4075 6925 2 chr5A.!!$F3 2850
6 TraesCS4A01G078800 chr5A 78144496 78147105 2609 False 1679.000000 2364 89.460000 958 3625 2 chr5A.!!$F2 2667
7 TraesCS4A01G078800 chr6A 424795544 424796105 561 True 403.000000 403 80.382000 7290 7841 1 chr6A.!!$R2 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 850 0.323725 ATTGGATGGAGCACGCCTTT 60.324 50.000 0.00 0.00 0.00 3.11 F
831 851 0.539438 TTGGATGGAGCACGCCTTTT 60.539 50.000 0.00 0.00 0.00 2.27 F
861 881 0.659957 GAATCTTGGATGGAGCACGC 59.340 55.000 0.00 0.00 0.00 5.34 F
2477 4429 2.299582 CTGGTTTGATGCACCAATTGGA 59.700 45.455 31.22 9.31 43.96 3.53 F
3706 8004 0.249657 CAGAGGCTTATCGACCTGGC 60.250 60.000 0.00 0.00 36.05 4.85 F
3845 8143 1.532868 CACCTTTCTCAAGCCTCAACG 59.467 52.381 0.00 0.00 0.00 4.10 F
4930 9262 1.959042 AATGCGGAGTCACATCCATC 58.041 50.000 0.00 0.00 39.53 3.51 F
5928 10281 1.689984 TTGTGGCTCAATTGTCTGCA 58.310 45.000 17.32 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2068 4016 1.665916 CACCTCGTGTGCTCAGGTG 60.666 63.158 10.23 10.23 43.06 4.00 R
2139 4088 3.265791 GTGGAGCATTCTTACAGACCTG 58.734 50.000 0.00 0.00 0.00 4.00 R
2623 4575 3.622163 TGTGCCAAAACAAAGCTTGAATG 59.378 39.130 0.00 0.00 0.00 2.67 R
3807 8105 1.068194 GTGTCGACTACTTCTGCAGCT 60.068 52.381 17.92 0.00 0.00 4.24 R
4930 9262 0.592637 TTCAGCAAGTGCATTGGTCG 59.407 50.000 6.00 7.11 46.55 4.79 R
5099 9431 1.968493 ACCTGTAGCGAAAGGAGTGAA 59.032 47.619 10.46 0.00 37.01 3.18 R
5942 10295 1.689984 TGCAGACAATTGAGCCACAA 58.310 45.000 13.59 0.00 42.95 3.33 R
7279 11646 0.032130 GTCTGTCGCCTCACTGTTGA 59.968 55.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.576078 TGAGTGGCTTTTCAGAAAGGA 57.424 42.857 9.16 0.00 42.04 3.36
79 84 7.924103 AAAATGTTTGTCGAAACCTATCAAC 57.076 32.000 0.00 0.00 40.81 3.18
81 86 5.412526 TGTTTGTCGAAACCTATCAACAC 57.587 39.130 0.00 0.00 40.81 3.32
94 99 5.189145 ACCTATCAACACGGGATCTAGTTTT 59.811 40.000 0.00 0.00 0.00 2.43
95 100 5.523916 CCTATCAACACGGGATCTAGTTTTG 59.476 44.000 0.00 11.21 31.48 2.44
97 102 4.963373 TCAACACGGGATCTAGTTTTGAA 58.037 39.130 15.20 5.09 35.11 2.69
98 103 4.994852 TCAACACGGGATCTAGTTTTGAAG 59.005 41.667 15.20 0.00 35.11 3.02
99 104 4.884668 ACACGGGATCTAGTTTTGAAGA 57.115 40.909 0.00 0.00 0.00 2.87
100 105 5.422214 ACACGGGATCTAGTTTTGAAGAT 57.578 39.130 0.00 0.00 0.00 2.40
103 108 6.715264 ACACGGGATCTAGTTTTGAAGATTTT 59.285 34.615 0.00 0.00 0.00 1.82
104 109 7.023575 CACGGGATCTAGTTTTGAAGATTTTG 58.976 38.462 0.00 0.00 0.00 2.44
105 110 6.940298 ACGGGATCTAGTTTTGAAGATTTTGA 59.060 34.615 0.00 0.00 0.00 2.69
107 112 7.414540 CGGGATCTAGTTTTGAAGATTTTGAGG 60.415 40.741 0.00 0.00 0.00 3.86
108 113 7.394641 GGGATCTAGTTTTGAAGATTTTGAGGT 59.605 37.037 0.00 0.00 0.00 3.85
109 114 8.239998 GGATCTAGTTTTGAAGATTTTGAGGTG 58.760 37.037 0.00 0.00 0.00 4.00
110 115 8.924511 ATCTAGTTTTGAAGATTTTGAGGTGA 57.075 30.769 0.00 0.00 0.00 4.02
111 116 8.746052 TCTAGTTTTGAAGATTTTGAGGTGAA 57.254 30.769 0.00 0.00 0.00 3.18
112 117 9.184523 TCTAGTTTTGAAGATTTTGAGGTGAAA 57.815 29.630 0.00 0.00 0.00 2.69
115 120 9.101655 AGTTTTGAAGATTTTGAGGTGAAAATG 57.898 29.630 0.00 0.00 36.00 2.32
116 121 9.097257 GTTTTGAAGATTTTGAGGTGAAAATGA 57.903 29.630 0.00 0.00 36.00 2.57
117 122 9.835389 TTTTGAAGATTTTGAGGTGAAAATGAT 57.165 25.926 0.00 0.00 36.00 2.45
118 123 8.821147 TTGAAGATTTTGAGGTGAAAATGATG 57.179 30.769 0.00 0.00 36.00 3.07
122 141 4.764679 TTTGAGGTGAAAATGATGGACG 57.235 40.909 0.00 0.00 0.00 4.79
125 144 0.802494 GGTGAAAATGATGGACGCGT 59.198 50.000 13.85 13.85 0.00 6.01
129 148 2.004017 GAAAATGATGGACGCGTGGTA 58.996 47.619 20.70 2.02 0.00 3.25
192 211 6.378710 AAGAGAAAACTCTAAGGTTGCAAC 57.621 37.500 21.59 21.59 32.66 4.17
199 218 3.214328 CTCTAAGGTTGCAACAAGTGGT 58.786 45.455 29.55 10.75 0.00 4.16
217 236 4.440214 GCACATGCAACACGCTAC 57.560 55.556 0.00 0.00 43.06 3.58
218 237 1.868997 GCACATGCAACACGCTACT 59.131 52.632 0.00 0.00 43.06 2.57
231 250 0.859232 CGCTACTTGTCGCAACTTGT 59.141 50.000 0.00 0.00 0.00 3.16
232 251 1.136611 CGCTACTTGTCGCAACTTGTC 60.137 52.381 0.00 0.00 0.00 3.18
252 271 3.503748 GTCAAGGTGGAAGTGATCTTTGG 59.496 47.826 0.00 0.00 33.64 3.28
256 275 3.084786 GGTGGAAGTGATCTTTGGAAGG 58.915 50.000 0.00 0.00 33.64 3.46
258 277 4.398319 GTGGAAGTGATCTTTGGAAGGAA 58.602 43.478 0.00 0.00 33.64 3.36
262 281 6.012508 TGGAAGTGATCTTTGGAAGGAATACT 60.013 38.462 0.00 0.00 33.64 2.12
311 330 4.753610 CCGCATGATTAAGATGACATGTCT 59.246 41.667 25.55 11.93 41.14 3.41
404 423 4.299586 TGCATAAAGGTTGAGTGGATGA 57.700 40.909 0.00 0.00 0.00 2.92
521 541 4.977739 TCCTCCAGAATCCATATGAAACCT 59.022 41.667 3.65 0.00 0.00 3.50
535 555 9.956720 CCATATGAAACCTTTTGAATCATACTC 57.043 33.333 3.65 0.00 36.22 2.59
536 556 9.956720 CATATGAAACCTTTTGAATCATACTCC 57.043 33.333 0.00 0.00 36.22 3.85
537 557 6.834168 TGAAACCTTTTGAATCATACTCCC 57.166 37.500 0.00 0.00 0.00 4.30
538 558 6.552008 TGAAACCTTTTGAATCATACTCCCT 58.448 36.000 0.00 0.00 0.00 4.20
540 560 7.508977 TGAAACCTTTTGAATCATACTCCCTTT 59.491 33.333 0.00 0.00 0.00 3.11
541 561 8.950007 AAACCTTTTGAATCATACTCCCTTTA 57.050 30.769 0.00 0.00 0.00 1.85
542 562 9.547279 AAACCTTTTGAATCATACTCCCTTTAT 57.453 29.630 0.00 0.00 0.00 1.40
543 563 9.547279 AACCTTTTGAATCATACTCCCTTTATT 57.453 29.630 0.00 0.00 0.00 1.40
544 564 9.190317 ACCTTTTGAATCATACTCCCTTTATTC 57.810 33.333 0.00 0.00 0.00 1.75
545 565 8.633561 CCTTTTGAATCATACTCCCTTTATTCC 58.366 37.037 0.00 0.00 0.00 3.01
546 566 9.189156 CTTTTGAATCATACTCCCTTTATTCCA 57.811 33.333 0.00 0.00 0.00 3.53
547 567 9.540538 TTTTGAATCATACTCCCTTTATTCCAA 57.459 29.630 0.00 0.00 0.00 3.53
548 568 9.540538 TTTGAATCATACTCCCTTTATTCCAAA 57.459 29.630 0.00 0.00 0.00 3.28
549 569 9.540538 TTGAATCATACTCCCTTTATTCCAAAA 57.459 29.630 0.00 0.00 0.00 2.44
550 570 9.713684 TGAATCATACTCCCTTTATTCCAAAAT 57.286 29.630 0.00 0.00 0.00 1.82
557 577 8.996651 ACTCCCTTTATTCCAAAATATAGTGG 57.003 34.615 0.00 0.00 36.13 4.00
558 578 7.505923 ACTCCCTTTATTCCAAAATATAGTGGC 59.494 37.037 0.51 0.00 34.68 5.01
559 579 7.591821 TCCCTTTATTCCAAAATATAGTGGCT 58.408 34.615 0.51 0.00 34.68 4.75
560 580 7.724061 TCCCTTTATTCCAAAATATAGTGGCTC 59.276 37.037 0.51 0.00 34.68 4.70
561 581 7.505585 CCCTTTATTCCAAAATATAGTGGCTCA 59.494 37.037 0.51 0.00 34.68 4.26
562 582 9.082313 CCTTTATTCCAAAATATAGTGGCTCAT 57.918 33.333 0.51 0.00 34.68 2.90
563 583 9.903682 CTTTATTCCAAAATATAGTGGCTCATG 57.096 33.333 0.51 0.00 34.68 3.07
564 584 8.995027 TTATTCCAAAATATAGTGGCTCATGT 57.005 30.769 0.00 0.00 34.68 3.21
565 585 7.902920 ATTCCAAAATATAGTGGCTCATGTT 57.097 32.000 0.00 0.00 34.68 2.71
566 586 7.716799 TTCCAAAATATAGTGGCTCATGTTT 57.283 32.000 0.00 0.00 34.68 2.83
567 587 7.716799 TCCAAAATATAGTGGCTCATGTTTT 57.283 32.000 0.00 0.00 34.68 2.43
568 588 8.133024 TCCAAAATATAGTGGCTCATGTTTTT 57.867 30.769 0.00 0.00 34.68 1.94
569 589 8.250332 TCCAAAATATAGTGGCTCATGTTTTTC 58.750 33.333 0.00 0.00 34.68 2.29
570 590 8.034215 CCAAAATATAGTGGCTCATGTTTTTCA 58.966 33.333 0.00 0.00 0.00 2.69
571 591 9.421806 CAAAATATAGTGGCTCATGTTTTTCAA 57.578 29.630 0.00 0.00 0.00 2.69
572 592 9.643693 AAAATATAGTGGCTCATGTTTTTCAAG 57.356 29.630 0.00 0.00 0.00 3.02
573 593 5.649782 ATAGTGGCTCATGTTTTTCAAGG 57.350 39.130 0.00 0.00 0.00 3.61
574 594 3.299503 AGTGGCTCATGTTTTTCAAGGT 58.700 40.909 0.00 0.00 0.00 3.50
575 595 4.469657 AGTGGCTCATGTTTTTCAAGGTA 58.530 39.130 0.00 0.00 0.00 3.08
576 596 4.278419 AGTGGCTCATGTTTTTCAAGGTAC 59.722 41.667 0.00 0.00 0.00 3.34
577 597 4.037446 GTGGCTCATGTTTTTCAAGGTACA 59.963 41.667 0.00 0.00 0.00 2.90
578 598 4.646945 TGGCTCATGTTTTTCAAGGTACAA 59.353 37.500 0.00 0.00 0.00 2.41
579 599 4.982295 GGCTCATGTTTTTCAAGGTACAAC 59.018 41.667 0.00 0.00 0.00 3.32
580 600 5.221244 GGCTCATGTTTTTCAAGGTACAACT 60.221 40.000 0.00 0.00 0.00 3.16
581 601 6.273071 GCTCATGTTTTTCAAGGTACAACTT 58.727 36.000 0.00 0.00 0.00 2.66
582 602 6.756542 GCTCATGTTTTTCAAGGTACAACTTT 59.243 34.615 0.00 0.00 0.00 2.66
583 603 7.918562 GCTCATGTTTTTCAAGGTACAACTTTA 59.081 33.333 0.00 0.00 0.00 1.85
584 604 9.796120 CTCATGTTTTTCAAGGTACAACTTTAA 57.204 29.630 0.00 0.00 0.00 1.52
585 605 9.575783 TCATGTTTTTCAAGGTACAACTTTAAC 57.424 29.630 0.00 0.00 0.00 2.01
586 606 8.813282 CATGTTTTTCAAGGTACAACTTTAACC 58.187 33.333 0.00 0.00 0.00 2.85
587 607 7.893658 TGTTTTTCAAGGTACAACTTTAACCA 58.106 30.769 0.00 0.00 35.64 3.67
588 608 8.532819 TGTTTTTCAAGGTACAACTTTAACCAT 58.467 29.630 0.00 0.00 35.64 3.55
616 636 7.760131 TTTAACTAACGATCTTGTATTCCCG 57.240 36.000 0.00 0.00 0.00 5.14
617 637 4.996788 ACTAACGATCTTGTATTCCCGT 57.003 40.909 0.00 0.00 0.00 5.28
618 638 4.929781 ACTAACGATCTTGTATTCCCGTC 58.070 43.478 0.00 0.00 0.00 4.79
619 639 2.486951 ACGATCTTGTATTCCCGTCG 57.513 50.000 0.00 0.00 0.00 5.12
620 640 1.129326 CGATCTTGTATTCCCGTCGC 58.871 55.000 0.00 0.00 0.00 5.19
621 641 1.535226 CGATCTTGTATTCCCGTCGCA 60.535 52.381 0.00 0.00 0.00 5.10
622 642 2.128035 GATCTTGTATTCCCGTCGCAG 58.872 52.381 0.00 0.00 0.00 5.18
623 643 0.892755 TCTTGTATTCCCGTCGCAGT 59.107 50.000 0.00 0.00 0.00 4.40
624 644 1.135199 TCTTGTATTCCCGTCGCAGTC 60.135 52.381 0.00 0.00 0.00 3.51
625 645 0.457166 TTGTATTCCCGTCGCAGTCG 60.457 55.000 0.00 0.00 39.05 4.18
632 652 2.050351 CGTCGCAGTCGGTCTTGT 60.050 61.111 0.00 0.00 35.06 3.16
633 653 1.660575 CGTCGCAGTCGGTCTTGTT 60.661 57.895 0.00 0.00 35.06 2.83
634 654 1.853319 GTCGCAGTCGGTCTTGTTG 59.147 57.895 0.00 0.00 36.13 3.33
635 655 1.300620 TCGCAGTCGGTCTTGTTGG 60.301 57.895 0.00 0.00 36.13 3.77
636 656 1.594293 CGCAGTCGGTCTTGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
637 657 1.157870 CGCAGTCGGTCTTGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
638 658 1.870580 CGCAGTCGGTCTTGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
639 659 2.215196 GCAGTCGGTCTTGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
640 660 2.614983 GCAGTCGGTCTTGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
641 661 3.252458 GCAGTCGGTCTTGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
642 662 4.261447 GCAGTCGGTCTTGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
643 663 5.735070 GCAGTCGGTCTTGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
644 664 6.513720 GCAGTCGGTCTTGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
645 665 7.590279 CAGTCGGTCTTGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
646 666 7.537306 CAGTCGGTCTTGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
647 667 7.446013 AGTCGGTCTTGTTGGTTAAATTTATGA 59.554 33.333 0.00 0.00 0.00 2.15
648 668 8.241367 GTCGGTCTTGTTGGTTAAATTTATGAT 58.759 33.333 0.00 0.00 0.00 2.45
649 669 8.455682 TCGGTCTTGTTGGTTAAATTTATGATC 58.544 33.333 0.00 0.00 0.00 2.92
650 670 8.240682 CGGTCTTGTTGGTTAAATTTATGATCA 58.759 33.333 0.00 0.00 0.00 2.92
651 671 9.921637 GGTCTTGTTGGTTAAATTTATGATCAA 57.078 29.630 0.00 0.00 0.00 2.57
693 713 8.687824 AAAATGAAGCACTATATTTTGGAACG 57.312 30.769 0.00 0.00 33.05 3.95
694 714 5.811399 TGAAGCACTATATTTTGGAACGG 57.189 39.130 0.00 0.00 0.00 4.44
695 715 5.492895 TGAAGCACTATATTTTGGAACGGA 58.507 37.500 0.00 0.00 0.00 4.69
696 716 5.584649 TGAAGCACTATATTTTGGAACGGAG 59.415 40.000 0.00 0.00 0.00 4.63
697 717 4.451900 AGCACTATATTTTGGAACGGAGG 58.548 43.478 0.00 0.00 0.00 4.30
698 718 3.564225 GCACTATATTTTGGAACGGAGGG 59.436 47.826 0.00 0.00 0.00 4.30
699 719 4.685030 GCACTATATTTTGGAACGGAGGGA 60.685 45.833 0.00 0.00 0.00 4.20
700 720 5.057149 CACTATATTTTGGAACGGAGGGAG 58.943 45.833 0.00 0.00 0.00 4.30
779 799 3.129462 GGAGCTTTAAGATTCCAACTGCC 59.871 47.826 9.92 0.00 0.00 4.85
824 844 3.179443 TCGTTCTATTGGATGGAGCAC 57.821 47.619 0.00 0.00 0.00 4.40
826 846 1.599542 GTTCTATTGGATGGAGCACGC 59.400 52.381 0.00 0.00 0.00 5.34
829 849 0.546122 TATTGGATGGAGCACGCCTT 59.454 50.000 0.00 0.00 0.00 4.35
830 850 0.323725 ATTGGATGGAGCACGCCTTT 60.324 50.000 0.00 0.00 0.00 3.11
831 851 0.539438 TTGGATGGAGCACGCCTTTT 60.539 50.000 0.00 0.00 0.00 2.27
833 853 0.733150 GGATGGAGCACGCCTTTTAC 59.267 55.000 0.00 0.00 0.00 2.01
835 855 2.084546 GATGGAGCACGCCTTTTACTT 58.915 47.619 0.00 0.00 0.00 2.24
836 856 1.975660 TGGAGCACGCCTTTTACTTT 58.024 45.000 0.00 0.00 0.00 2.66
837 857 2.303175 TGGAGCACGCCTTTTACTTTT 58.697 42.857 0.00 0.00 0.00 2.27
838 858 2.034053 TGGAGCACGCCTTTTACTTTTG 59.966 45.455 0.00 0.00 0.00 2.44
839 859 2.051423 GAGCACGCCTTTTACTTTTGC 58.949 47.619 0.00 0.00 0.00 3.68
850 870 5.858581 CCTTTTACTTTTGCGAGAATCTTGG 59.141 40.000 0.00 0.00 0.00 3.61
851 871 6.293955 CCTTTTACTTTTGCGAGAATCTTGGA 60.294 38.462 0.00 0.00 0.00 3.53
852 872 6.817765 TTTACTTTTGCGAGAATCTTGGAT 57.182 33.333 0.00 0.00 0.00 3.41
854 874 3.441572 ACTTTTGCGAGAATCTTGGATGG 59.558 43.478 0.00 0.00 0.00 3.51
861 881 0.659957 GAATCTTGGATGGAGCACGC 59.340 55.000 0.00 0.00 0.00 5.34
906 2449 3.086600 CCCCAGAGCCAGAGGGAC 61.087 72.222 0.00 0.00 45.80 4.46
907 2450 3.086600 CCCAGAGCCAGAGGGACC 61.087 72.222 0.00 0.00 45.80 4.46
908 2451 3.086600 CCAGAGCCAGAGGGACCC 61.087 72.222 0.59 0.59 35.59 4.46
1437 3384 3.561503 GTTTGTTTGTACAGGATTCGGC 58.438 45.455 0.00 0.00 35.28 5.54
1441 3388 3.438781 TGTTTGTACAGGATTCGGCAATC 59.561 43.478 0.00 2.32 38.19 2.67
1502 3449 3.342269 GCACATACAAATACGCACGAAG 58.658 45.455 0.00 0.00 0.00 3.79
1601 3549 7.201705 GGCATTTTATTCGTAGTAAGCTTTCCT 60.202 37.037 3.20 3.75 0.00 3.36
2010 3958 8.110860 AGTTAATTGATCCAAAGTGTAAGGTG 57.889 34.615 0.00 0.00 0.00 4.00
2019 3967 4.393062 CCAAAGTGTAAGGTGAGCATACAG 59.607 45.833 0.00 0.00 30.70 2.74
2068 4016 7.477144 TGTGTTCGGTGTATCATTATGATTC 57.523 36.000 13.25 8.82 38.26 2.52
2115 4063 4.553351 CGCGTGAAACTGCATATGATGAAT 60.553 41.667 6.97 0.00 36.43 2.57
2477 4429 2.299582 CTGGTTTGATGCACCAATTGGA 59.700 45.455 31.22 9.31 43.96 3.53
2619 4571 6.604171 TGCCTATGATATGGTGAACATCTTT 58.396 36.000 0.00 0.00 41.03 2.52
2620 4572 7.744733 TGCCTATGATATGGTGAACATCTTTA 58.255 34.615 0.00 0.00 41.03 1.85
2621 4573 7.879677 TGCCTATGATATGGTGAACATCTTTAG 59.120 37.037 0.00 0.00 41.03 1.85
2623 4575 9.429359 CCTATGATATGGTGAACATCTTTAGTC 57.571 37.037 0.00 0.00 41.03 2.59
2624 4576 9.987272 CTATGATATGGTGAACATCTTTAGTCA 57.013 33.333 0.00 0.00 41.03 3.41
2627 4579 9.330063 TGATATGGTGAACATCTTTAGTCATTC 57.670 33.333 0.00 0.00 41.03 2.67
2628 4580 9.330063 GATATGGTGAACATCTTTAGTCATTCA 57.670 33.333 0.00 0.00 41.03 2.57
2629 4581 9.685276 ATATGGTGAACATCTTTAGTCATTCAA 57.315 29.630 0.00 0.00 41.03 2.69
2630 4582 7.439157 TGGTGAACATCTTTAGTCATTCAAG 57.561 36.000 0.00 0.00 0.00 3.02
2631 4583 6.072508 TGGTGAACATCTTTAGTCATTCAAGC 60.073 38.462 0.00 0.00 0.00 4.01
2700 4737 3.073209 TGTGCCCAAGTTAGACATACCAA 59.927 43.478 0.00 0.00 0.00 3.67
2905 4954 8.520119 ACCATCCAAACATACCCTATATTAGT 57.480 34.615 0.00 0.00 0.00 2.24
3011 5063 6.129115 CCACAAAATACGACTGAAAAATGCAG 60.129 38.462 0.00 0.00 39.26 4.41
3145 5213 1.196354 GCAAGAGCTACAAGCACACAG 59.804 52.381 1.22 0.00 45.56 3.66
3152 5220 3.012518 GCTACAAGCACACAGATCCATT 58.987 45.455 0.00 0.00 41.89 3.16
3158 5226 6.392354 ACAAGCACACAGATCCATTTATTTG 58.608 36.000 0.00 0.00 0.00 2.32
3706 8004 0.249657 CAGAGGCTTATCGACCTGGC 60.250 60.000 0.00 0.00 36.05 4.85
3745 8043 9.643693 CAATTTCTTTTACCAGAACATATTGCT 57.356 29.630 0.00 0.00 32.28 3.91
3845 8143 1.532868 CACCTTTCTCAAGCCTCAACG 59.467 52.381 0.00 0.00 0.00 4.10
3936 8236 9.455144 TTTGTACTCCCTCCATTCCTAAATATA 57.545 33.333 0.00 0.00 0.00 0.86
3945 8245 9.508642 CCTCCATTCCTAAATATAAGACCTTTC 57.491 37.037 0.00 0.00 0.00 2.62
3964 8264 9.267084 GACCTTTCAGAGATTTCAATATAGACC 57.733 37.037 0.00 0.00 0.00 3.85
4086 8386 3.709653 ACGGAGGGAGTATTTAGCAATGA 59.290 43.478 0.00 0.00 0.00 2.57
4181 8485 9.577222 AAATTGGATGAATGGTTTGAAGAAATT 57.423 25.926 0.00 0.00 0.00 1.82
4189 8493 9.094578 TGAATGGTTTGAAGAAATTGGGTTATA 57.905 29.630 0.00 0.00 0.00 0.98
4190 8494 9.366216 GAATGGTTTGAAGAAATTGGGTTATAC 57.634 33.333 0.00 0.00 0.00 1.47
4191 8495 8.664669 ATGGTTTGAAGAAATTGGGTTATACT 57.335 30.769 0.00 0.00 0.00 2.12
4192 8496 7.891561 TGGTTTGAAGAAATTGGGTTATACTG 58.108 34.615 0.00 0.00 0.00 2.74
4193 8497 7.507616 TGGTTTGAAGAAATTGGGTTATACTGT 59.492 33.333 0.00 0.00 0.00 3.55
4194 8498 8.364894 GGTTTGAAGAAATTGGGTTATACTGTT 58.635 33.333 0.00 0.00 0.00 3.16
4227 8531 5.488341 TGGCACTCTAGTTTGTTTATCCTC 58.512 41.667 0.00 0.00 0.00 3.71
4250 8556 5.945784 TCTTTGCTTGGCTAAACATATGTCT 59.054 36.000 9.23 0.00 0.00 3.41
4886 9218 2.696526 TTCTGGTAGGAGGCGGATAT 57.303 50.000 0.00 0.00 0.00 1.63
4930 9262 1.959042 AATGCGGAGTCACATCCATC 58.041 50.000 0.00 0.00 39.53 3.51
5001 9333 6.375455 TCTTGAAGCAATGGAGAAGGTAATTC 59.625 38.462 0.00 0.00 38.28 2.17
5092 9424 4.884164 GTGCCAGCTACAAGGATCTAAAAT 59.116 41.667 0.00 0.00 0.00 1.82
5099 9431 9.553064 CAGCTACAAGGATCTAAAATAGAATGT 57.447 33.333 0.00 0.00 38.50 2.71
5343 9680 5.461032 TGAAAACTTCAGTTGGTGTTGTT 57.539 34.783 0.00 0.00 38.44 2.83
5677 10018 8.972127 TGTTAGTTGGCCATGCTTTTATATTTA 58.028 29.630 6.09 0.00 0.00 1.40
5921 10274 2.560105 GGCTTCTCTTTGTGGCTCAATT 59.440 45.455 2.46 0.00 35.84 2.32
5922 10275 3.572584 GCTTCTCTTTGTGGCTCAATTG 58.427 45.455 2.46 0.00 35.84 2.32
5923 10276 3.005155 GCTTCTCTTTGTGGCTCAATTGT 59.995 43.478 5.13 0.00 35.84 2.71
5924 10277 4.791974 CTTCTCTTTGTGGCTCAATTGTC 58.208 43.478 5.13 0.00 35.84 3.18
5925 10278 4.090761 TCTCTTTGTGGCTCAATTGTCT 57.909 40.909 5.13 0.00 35.84 3.41
5926 10279 3.817084 TCTCTTTGTGGCTCAATTGTCTG 59.183 43.478 5.13 0.00 35.84 3.51
5927 10280 2.294233 TCTTTGTGGCTCAATTGTCTGC 59.706 45.455 5.13 8.55 35.84 4.26
5928 10281 1.689984 TTGTGGCTCAATTGTCTGCA 58.310 45.000 17.32 0.00 0.00 4.41
5929 10282 1.689984 TGTGGCTCAATTGTCTGCAA 58.310 45.000 17.32 7.98 39.16 4.08
5930 10283 2.241160 TGTGGCTCAATTGTCTGCAAT 58.759 42.857 17.32 0.00 46.38 3.56
5944 10297 7.697352 TTGTCTGCAATTTGTATGTTCTTTG 57.303 32.000 0.00 0.00 0.00 2.77
5945 10298 6.804677 TGTCTGCAATTTGTATGTTCTTTGT 58.195 32.000 0.00 0.00 0.00 2.83
5946 10299 6.696583 TGTCTGCAATTTGTATGTTCTTTGTG 59.303 34.615 0.00 0.00 0.00 3.33
5947 10300 6.144402 GTCTGCAATTTGTATGTTCTTTGTGG 59.856 38.462 0.00 0.00 0.00 4.17
5948 10301 4.749099 TGCAATTTGTATGTTCTTTGTGGC 59.251 37.500 0.00 0.00 0.00 5.01
5949 10302 4.990426 GCAATTTGTATGTTCTTTGTGGCT 59.010 37.500 0.00 0.00 0.00 4.75
5950 10303 5.119125 GCAATTTGTATGTTCTTTGTGGCTC 59.881 40.000 0.00 0.00 0.00 4.70
5951 10304 6.215121 CAATTTGTATGTTCTTTGTGGCTCA 58.785 36.000 0.00 0.00 0.00 4.26
5952 10305 5.843673 TTTGTATGTTCTTTGTGGCTCAA 57.156 34.783 0.00 0.00 0.00 3.02
5953 10306 6.403866 TTTGTATGTTCTTTGTGGCTCAAT 57.596 33.333 2.46 0.00 35.84 2.57
5957 10310 4.305989 TGTTCTTTGTGGCTCAATTGTC 57.694 40.909 5.13 0.00 35.84 3.18
6235 10592 5.164620 TCCAGATGCTGATTCACTTTACA 57.835 39.130 0.00 0.00 32.44 2.41
6285 10642 1.156736 CAAGAACAGTGGTTAGCGGG 58.843 55.000 0.00 0.00 37.36 6.13
6422 10783 2.568623 ATGAGCAGAACCGGAAAGTT 57.431 45.000 9.46 0.00 0.00 2.66
6498 10859 0.736053 GGTTTTGGCCGCATCGAATA 59.264 50.000 0.00 0.00 0.00 1.75
6584 10951 1.275291 TGTACAGTAGCAGCCACTTCC 59.725 52.381 0.00 0.00 0.00 3.46
7227 11594 3.963383 ACACCGTTGTGATTGAAGAAC 57.037 42.857 0.00 0.00 45.76 3.01
7228 11595 2.286833 ACACCGTTGTGATTGAAGAACG 59.713 45.455 0.00 0.00 45.76 3.95
7229 11596 1.263217 ACCGTTGTGATTGAAGAACGC 59.737 47.619 0.00 0.00 43.30 4.84
7230 11597 1.531149 CCGTTGTGATTGAAGAACGCT 59.469 47.619 0.00 0.00 43.30 5.07
7231 11598 2.032030 CCGTTGTGATTGAAGAACGCTT 60.032 45.455 0.00 0.00 43.30 4.68
7232 11599 2.966708 CGTTGTGATTGAAGAACGCTTG 59.033 45.455 0.00 0.00 39.50 4.01
7233 11600 3.546020 CGTTGTGATTGAAGAACGCTTGT 60.546 43.478 0.00 0.00 39.50 3.16
7234 11601 4.351192 GTTGTGATTGAAGAACGCTTGTT 58.649 39.130 0.00 0.00 38.91 2.83
7235 11602 3.951306 TGTGATTGAAGAACGCTTGTTG 58.049 40.909 0.00 0.00 35.50 3.33
7236 11603 3.376859 TGTGATTGAAGAACGCTTGTTGT 59.623 39.130 0.00 0.00 35.50 3.32
7237 11604 4.142491 TGTGATTGAAGAACGCTTGTTGTT 60.142 37.500 0.00 0.00 41.31 2.83
7238 11605 4.798387 GTGATTGAAGAACGCTTGTTGTTT 59.202 37.500 0.00 0.00 38.99 2.83
7239 11606 4.797868 TGATTGAAGAACGCTTGTTGTTTG 59.202 37.500 0.00 0.00 38.99 2.93
7240 11607 3.840890 TGAAGAACGCTTGTTGTTTGT 57.159 38.095 0.00 0.00 38.99 2.83
7241 11608 3.753842 TGAAGAACGCTTGTTGTTTGTC 58.246 40.909 0.00 0.00 38.99 3.18
7242 11609 3.189495 TGAAGAACGCTTGTTGTTTGTCA 59.811 39.130 0.00 0.00 38.99 3.58
7243 11610 3.131240 AGAACGCTTGTTGTTTGTCAC 57.869 42.857 0.00 0.00 35.50 3.67
7244 11611 2.159435 AGAACGCTTGTTGTTTGTCACC 60.159 45.455 0.00 0.00 35.50 4.02
7245 11612 1.459450 ACGCTTGTTGTTTGTCACCT 58.541 45.000 0.00 0.00 0.00 4.00
7246 11613 1.400494 ACGCTTGTTGTTTGTCACCTC 59.600 47.619 0.00 0.00 0.00 3.85
7247 11614 1.268539 CGCTTGTTGTTTGTCACCTCC 60.269 52.381 0.00 0.00 0.00 4.30
7248 11615 1.067060 GCTTGTTGTTTGTCACCTCCC 59.933 52.381 0.00 0.00 0.00 4.30
7249 11616 1.681264 CTTGTTGTTTGTCACCTCCCC 59.319 52.381 0.00 0.00 0.00 4.81
7250 11617 0.106419 TGTTGTTTGTCACCTCCCCC 60.106 55.000 0.00 0.00 0.00 5.40
7265 11632 3.614192 CCCCCTCCCCCTTTTTGA 58.386 61.111 0.00 0.00 0.00 2.69
7266 11633 1.388133 CCCCCTCCCCCTTTTTGAG 59.612 63.158 0.00 0.00 0.00 3.02
7267 11634 1.443729 CCCCCTCCCCCTTTTTGAGT 61.444 60.000 0.00 0.00 0.00 3.41
7268 11635 0.251787 CCCCTCCCCCTTTTTGAGTG 60.252 60.000 0.00 0.00 0.00 3.51
7269 11636 0.482887 CCCTCCCCCTTTTTGAGTGT 59.517 55.000 0.00 0.00 0.00 3.55
7270 11637 1.708551 CCCTCCCCCTTTTTGAGTGTA 59.291 52.381 0.00 0.00 0.00 2.90
7271 11638 2.554564 CCCTCCCCCTTTTTGAGTGTAC 60.555 54.545 0.00 0.00 0.00 2.90
7272 11639 2.375509 CCTCCCCCTTTTTGAGTGTACT 59.624 50.000 0.00 0.00 0.00 2.73
7273 11640 3.181433 CCTCCCCCTTTTTGAGTGTACTT 60.181 47.826 0.00 0.00 0.00 2.24
7274 11641 4.470602 CTCCCCCTTTTTGAGTGTACTTT 58.529 43.478 0.00 0.00 0.00 2.66
7275 11642 4.466827 TCCCCCTTTTTGAGTGTACTTTC 58.533 43.478 0.00 0.00 0.00 2.62
7276 11643 3.252458 CCCCCTTTTTGAGTGTACTTTCG 59.748 47.826 0.00 0.00 0.00 3.46
7277 11644 3.252458 CCCCTTTTTGAGTGTACTTTCGG 59.748 47.826 0.00 0.00 0.00 4.30
7278 11645 3.304458 CCCTTTTTGAGTGTACTTTCGGC 60.304 47.826 0.00 0.00 0.00 5.54
7279 11646 3.564225 CCTTTTTGAGTGTACTTTCGGCT 59.436 43.478 0.00 0.00 0.00 5.52
7280 11647 4.319549 CCTTTTTGAGTGTACTTTCGGCTC 60.320 45.833 0.00 0.00 0.00 4.70
7281 11648 3.462483 TTTGAGTGTACTTTCGGCTCA 57.538 42.857 0.00 0.00 34.80 4.26
7282 11649 3.462483 TTGAGTGTACTTTCGGCTCAA 57.538 42.857 0.00 0.00 41.89 3.02
7283 11650 2.750948 TGAGTGTACTTTCGGCTCAAC 58.249 47.619 0.00 0.00 33.84 3.18
7284 11651 2.101750 TGAGTGTACTTTCGGCTCAACA 59.898 45.455 0.00 0.00 33.84 3.33
7285 11652 2.731976 GAGTGTACTTTCGGCTCAACAG 59.268 50.000 0.00 0.00 0.00 3.16
7286 11653 2.102588 AGTGTACTTTCGGCTCAACAGT 59.897 45.455 0.00 0.00 0.00 3.55
7287 11654 2.221055 GTGTACTTTCGGCTCAACAGTG 59.779 50.000 0.00 0.00 0.00 3.66
7288 11655 2.101750 TGTACTTTCGGCTCAACAGTGA 59.898 45.455 0.00 0.00 0.00 3.41
7318 11685 1.751544 GGCCTATTCCCGCCGTTTT 60.752 57.895 0.00 0.00 34.94 2.43
7327 11694 2.632544 CCGCCGTTTTCCCCCTTTC 61.633 63.158 0.00 0.00 0.00 2.62
7345 11712 4.347607 CTTTCCCTCCATTTCCTCATTGT 58.652 43.478 0.00 0.00 0.00 2.71
7346 11713 4.402616 TTCCCTCCATTTCCTCATTGTT 57.597 40.909 0.00 0.00 0.00 2.83
7347 11714 4.402616 TCCCTCCATTTCCTCATTGTTT 57.597 40.909 0.00 0.00 0.00 2.83
7348 11715 4.750941 TCCCTCCATTTCCTCATTGTTTT 58.249 39.130 0.00 0.00 0.00 2.43
7350 11717 4.081476 CCCTCCATTTCCTCATTGTTTTCC 60.081 45.833 0.00 0.00 0.00 3.13
7353 11720 3.840078 CCATTTCCTCATTGTTTTCCCCT 59.160 43.478 0.00 0.00 0.00 4.79
7354 11721 4.286808 CCATTTCCTCATTGTTTTCCCCTT 59.713 41.667 0.00 0.00 0.00 3.95
7359 11739 0.246360 CATTGTTTTCCCCTTCCGCC 59.754 55.000 0.00 0.00 0.00 6.13
7378 11758 3.126879 CGCCATGCTGCCGAAGAA 61.127 61.111 0.00 0.00 0.00 2.52
7384 11764 2.684881 CCATGCTGCCGAAGAAGTATTT 59.315 45.455 0.00 0.00 0.00 1.40
7394 11774 0.107165 AGAAGTATTTGGCCCCTCGC 60.107 55.000 0.00 0.00 0.00 5.03
7405 11785 4.803426 CCCTCGCCTCGCTGTCAC 62.803 72.222 0.00 0.00 0.00 3.67
7406 11786 3.753434 CCTCGCCTCGCTGTCACT 61.753 66.667 0.00 0.00 0.00 3.41
7407 11787 2.505777 CTCGCCTCGCTGTCACTG 60.506 66.667 0.00 0.00 0.00 3.66
7408 11788 4.724602 TCGCCTCGCTGTCACTGC 62.725 66.667 0.00 0.00 0.00 4.40
7418 11798 1.226686 CTGTCACTGCACTGCCACTC 61.227 60.000 0.00 0.00 0.00 3.51
7419 11799 1.070445 GTCACTGCACTGCCACTCT 59.930 57.895 0.00 0.00 0.00 3.24
7420 11800 0.533755 GTCACTGCACTGCCACTCTT 60.534 55.000 0.00 0.00 0.00 2.85
7432 11812 1.952367 GCCACTCTTGATTCCACCCAG 60.952 57.143 0.00 0.00 0.00 4.45
7435 11815 0.745845 CTCTTGATTCCACCCAGCCG 60.746 60.000 0.00 0.00 0.00 5.52
7437 11817 0.322456 CTTGATTCCACCCAGCCGAA 60.322 55.000 0.00 0.00 0.00 4.30
7439 11819 1.299976 GATTCCACCCAGCCGAAGT 59.700 57.895 0.00 0.00 0.00 3.01
7441 11821 0.988832 ATTCCACCCAGCCGAAGTAA 59.011 50.000 0.00 0.00 0.00 2.24
7449 11838 1.339151 CCAGCCGAAGTAAAGGAAGCT 60.339 52.381 0.00 0.00 0.00 3.74
7455 11844 2.352960 CGAAGTAAAGGAAGCTGATGGC 59.647 50.000 0.00 0.00 42.19 4.40
7458 11847 3.350833 AGTAAAGGAAGCTGATGGCAAG 58.649 45.455 0.00 0.00 44.79 4.01
7469 11858 3.645660 TGGCAAGACCATCGGGCA 61.646 61.111 0.00 0.00 46.36 5.36
7480 11869 3.329542 ATCGGGCATGTCCAACGCT 62.330 57.895 18.31 0.00 36.21 5.07
7486 11875 0.950555 GCATGTCCAACGCTGAGTGA 60.951 55.000 0.00 0.00 0.00 3.41
7488 11877 1.462283 CATGTCCAACGCTGAGTGAAG 59.538 52.381 0.00 0.00 0.00 3.02
7499 11888 1.375326 GAGTGAAGGGCGGAGGTTT 59.625 57.895 0.00 0.00 0.00 3.27
7501 11890 0.613777 AGTGAAGGGCGGAGGTTTAG 59.386 55.000 0.00 0.00 0.00 1.85
7505 11894 4.468689 GGGCGGAGGTTTAGCGCT 62.469 66.667 17.26 17.26 40.11 5.92
7508 11897 2.511600 CGGAGGTTTAGCGCTGGG 60.512 66.667 22.90 0.00 0.00 4.45
7521 11910 2.976490 GCTGGGAGGCTGTCACCAT 61.976 63.158 0.00 0.00 31.62 3.55
7527 11916 2.509336 GGCTGTCACCATCGACCG 60.509 66.667 0.00 0.00 34.88 4.79
7534 11923 3.467226 ACCATCGACCGGCGGAAT 61.467 61.111 35.78 19.42 41.33 3.01
7542 11931 2.100879 GACCGGCGGAATAGGCTCAT 62.101 60.000 35.78 5.26 34.19 2.90
7543 11932 1.374758 CCGGCGGAATAGGCTCATC 60.375 63.158 24.41 0.00 34.19 2.92
7546 11935 1.005630 GCGGAATAGGCTCATCGCT 60.006 57.895 14.16 0.00 40.00 4.93
7564 11953 1.899437 CTAAGAAGGCCAGGGACGCA 61.899 60.000 5.01 0.00 0.00 5.24
7583 11978 4.880537 CAGCGGCGGAGTAGGCAG 62.881 72.222 9.78 0.00 36.37 4.85
7586 11981 2.561956 GCGGCGGAGTAGGCAGATA 61.562 63.158 9.78 0.00 36.37 1.98
7596 11991 3.556999 AGTAGGCAGATACGTCTCACAT 58.443 45.455 3.60 0.00 30.42 3.21
7610 12005 4.467769 GTCTCACATGGGGATGATGAATT 58.532 43.478 0.00 0.00 0.00 2.17
7613 12008 2.030540 CACATGGGGATGATGAATTCGC 60.031 50.000 0.04 0.00 0.00 4.70
7614 12009 1.198408 CATGGGGATGATGAATTCGCG 59.802 52.381 0.00 0.00 28.87 5.87
7616 12011 0.886490 GGGGATGATGAATTCGCGCT 60.886 55.000 5.56 0.00 0.00 5.92
7620 12015 1.096967 ATGATGAATTCGCGCTGCCA 61.097 50.000 5.56 0.00 0.00 4.92
7621 12016 1.297893 GATGAATTCGCGCTGCCAC 60.298 57.895 5.56 0.00 0.00 5.01
7622 12017 1.709147 GATGAATTCGCGCTGCCACT 61.709 55.000 5.56 0.00 0.00 4.00
7626 12021 1.361668 AATTCGCGCTGCCACTACTG 61.362 55.000 5.56 0.00 0.00 2.74
7630 12025 4.393155 CGCTGCCACTACTGCCCA 62.393 66.667 0.00 0.00 0.00 5.36
7632 12027 2.749682 CTGCCACTACTGCCCACA 59.250 61.111 0.00 0.00 0.00 4.17
7633 12028 1.073025 CTGCCACTACTGCCCACAA 59.927 57.895 0.00 0.00 0.00 3.33
7641 12036 0.245539 TACTGCCCACAAGCTACGTC 59.754 55.000 0.00 0.00 0.00 4.34
7663 12058 4.299547 AGCCAACAGAGCGTCGCA 62.300 61.111 21.09 0.00 34.64 5.10
7666 12061 2.456119 CCAACAGAGCGTCGCATCC 61.456 63.158 21.09 8.06 0.00 3.51
7667 12062 2.125512 AACAGAGCGTCGCATCCC 60.126 61.111 21.09 5.44 0.00 3.85
7735 12130 0.456221 CTGGCTACTTCGACGGTGAT 59.544 55.000 0.00 0.00 0.00 3.06
7736 12131 0.172578 TGGCTACTTCGACGGTGATG 59.827 55.000 0.00 0.00 0.00 3.07
7738 12133 0.457853 GCTACTTCGACGGTGATGCA 60.458 55.000 0.00 0.00 0.00 3.96
7747 12142 0.613260 ACGGTGATGCACATGGTAGT 59.387 50.000 0.00 0.00 35.86 2.73
7751 12146 3.081061 GGTGATGCACATGGTAGTTTCA 58.919 45.455 0.00 0.00 35.86 2.69
7762 12157 3.492337 TGGTAGTTTCAACCCCAACATC 58.508 45.455 0.00 0.00 36.06 3.06
7766 12161 2.091333 AGTTTCAACCCCAACATCACCT 60.091 45.455 0.00 0.00 0.00 4.00
7767 12162 2.286365 TTCAACCCCAACATCACCTC 57.714 50.000 0.00 0.00 0.00 3.85
7772 12167 2.438434 CCAACATCACCTCCCCGC 60.438 66.667 0.00 0.00 0.00 6.13
7810 12205 2.285668 TCCCCCTCTGGCCTGAAG 60.286 66.667 13.89 7.53 0.00 3.02
7811 12206 2.285668 CCCCCTCTGGCCTGAAGA 60.286 66.667 13.89 2.23 0.00 2.87
7819 12214 2.111999 CTGGCCTGAAGACCGACCAA 62.112 60.000 3.32 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.895297 TCCTTTCTGAAAAGCCACTCATTT 59.105 37.500 4.18 0.00 40.53 2.32
1 2 4.473444 TCCTTTCTGAAAAGCCACTCATT 58.527 39.130 4.18 0.00 40.53 2.57
2 3 4.104383 TCCTTTCTGAAAAGCCACTCAT 57.896 40.909 4.18 0.00 40.53 2.90
3 4 3.576078 TCCTTTCTGAAAAGCCACTCA 57.424 42.857 4.18 0.00 40.53 3.41
4 5 4.918810 TTTCCTTTCTGAAAAGCCACTC 57.081 40.909 4.18 0.00 40.53 3.51
5 6 5.675684 TTTTTCCTTTCTGAAAAGCCACT 57.324 34.783 4.18 0.00 43.09 4.00
59 64 4.025563 CGTGTTGATAGGTTTCGACAAACA 60.026 41.667 2.63 0.00 43.41 2.83
63 68 2.610976 CCCGTGTTGATAGGTTTCGACA 60.611 50.000 0.00 0.00 37.62 4.35
79 84 6.743575 AAATCTTCAAAACTAGATCCCGTG 57.256 37.500 0.00 0.00 0.00 4.94
81 86 7.377766 TCAAAATCTTCAAAACTAGATCCCG 57.622 36.000 0.00 0.00 0.00 5.14
94 99 7.233144 TCCATCATTTTCACCTCAAAATCTTCA 59.767 33.333 0.00 0.00 34.37 3.02
95 100 7.543520 GTCCATCATTTTCACCTCAAAATCTTC 59.456 37.037 0.00 0.00 34.37 2.87
97 102 6.349611 CGTCCATCATTTTCACCTCAAAATCT 60.350 38.462 0.00 0.00 34.37 2.40
98 103 5.801947 CGTCCATCATTTTCACCTCAAAATC 59.198 40.000 0.00 0.00 34.37 2.17
99 104 5.713025 CGTCCATCATTTTCACCTCAAAAT 58.287 37.500 0.00 0.00 36.57 1.82
100 105 4.558496 GCGTCCATCATTTTCACCTCAAAA 60.558 41.667 0.00 0.00 0.00 2.44
103 108 2.083774 GCGTCCATCATTTTCACCTCA 58.916 47.619 0.00 0.00 0.00 3.86
104 109 1.062587 CGCGTCCATCATTTTCACCTC 59.937 52.381 0.00 0.00 0.00 3.85
105 110 1.086696 CGCGTCCATCATTTTCACCT 58.913 50.000 0.00 0.00 0.00 4.00
107 112 1.465689 CCACGCGTCCATCATTTTCAC 60.466 52.381 9.86 0.00 0.00 3.18
108 113 0.801872 CCACGCGTCCATCATTTTCA 59.198 50.000 9.86 0.00 0.00 2.69
109 114 0.802494 ACCACGCGTCCATCATTTTC 59.198 50.000 9.86 0.00 0.00 2.29
110 115 2.102070 TACCACGCGTCCATCATTTT 57.898 45.000 9.86 0.00 0.00 1.82
111 116 2.325583 ATACCACGCGTCCATCATTT 57.674 45.000 9.86 0.00 0.00 2.32
112 117 3.069016 TCTTATACCACGCGTCCATCATT 59.931 43.478 9.86 0.00 0.00 2.57
115 120 2.292569 TCTCTTATACCACGCGTCCATC 59.707 50.000 9.86 0.00 0.00 3.51
116 121 2.304092 TCTCTTATACCACGCGTCCAT 58.696 47.619 9.86 5.29 0.00 3.41
117 122 1.753930 TCTCTTATACCACGCGTCCA 58.246 50.000 9.86 0.00 0.00 4.02
118 123 3.366440 AATCTCTTATACCACGCGTCC 57.634 47.619 9.86 0.00 0.00 4.79
174 193 5.394115 CCACTTGTTGCAACCTTAGAGTTTT 60.394 40.000 26.14 3.03 0.00 2.43
182 201 0.175531 GCACCACTTGTTGCAACCTT 59.824 50.000 26.14 7.95 0.00 3.50
184 203 0.805711 GTGCACCACTTGTTGCAACC 60.806 55.000 26.14 9.01 39.10 3.77
209 228 0.249322 AGTTGCGACAAGTAGCGTGT 60.249 50.000 6.90 0.00 33.77 4.49
211 230 0.859232 CAAGTTGCGACAAGTAGCGT 59.141 50.000 6.90 0.00 33.77 5.07
213 232 1.864711 TGACAAGTTGCGACAAGTAGC 59.135 47.619 6.90 0.00 0.00 3.58
214 233 3.059597 CCTTGACAAGTTGCGACAAGTAG 60.060 47.826 23.50 13.46 37.02 2.57
215 234 2.869801 CCTTGACAAGTTGCGACAAGTA 59.130 45.455 23.50 4.02 37.02 2.24
216 235 1.670811 CCTTGACAAGTTGCGACAAGT 59.329 47.619 23.50 3.89 37.02 3.16
217 236 1.670811 ACCTTGACAAGTTGCGACAAG 59.329 47.619 20.95 20.95 38.02 3.16
218 237 1.400142 CACCTTGACAAGTTGCGACAA 59.600 47.619 14.03 6.66 0.00 3.18
231 250 3.394274 TCCAAAGATCACTTCCACCTTGA 59.606 43.478 0.00 0.00 35.05 3.02
232 251 3.754965 TCCAAAGATCACTTCCACCTTG 58.245 45.455 0.00 0.00 35.05 3.61
287 306 3.817084 ACATGTCATCTTAATCATGCGGG 59.183 43.478 0.00 0.00 40.57 6.13
290 309 7.959689 AGTAGACATGTCATCTTAATCATGC 57.040 36.000 27.02 6.51 40.57 4.06
380 399 5.716228 TCATCCACTCAACCTTTATGCAAAT 59.284 36.000 0.00 0.00 0.00 2.32
484 503 9.218525 GGATTCTGGAGGATTATATTCCTATGA 57.781 37.037 14.75 10.73 46.35 2.15
521 541 9.540538 TTGGAATAAAGGGAGTATGATTCAAAA 57.459 29.630 0.00 0.00 0.00 2.44
533 553 7.725844 AGCCACTATATTTTGGAATAAAGGGAG 59.274 37.037 6.49 0.00 34.46 4.30
535 555 7.505585 TGAGCCACTATATTTTGGAATAAAGGG 59.494 37.037 6.49 0.00 34.46 3.95
536 556 8.463930 TGAGCCACTATATTTTGGAATAAAGG 57.536 34.615 6.49 0.00 34.46 3.11
537 557 9.903682 CATGAGCCACTATATTTTGGAATAAAG 57.096 33.333 6.49 0.00 34.46 1.85
538 558 9.420118 ACATGAGCCACTATATTTTGGAATAAA 57.580 29.630 0.00 0.00 34.46 1.40
540 560 8.995027 AACATGAGCCACTATATTTTGGAATA 57.005 30.769 0.00 0.00 34.46 1.75
541 561 7.902920 AACATGAGCCACTATATTTTGGAAT 57.097 32.000 0.00 0.00 34.46 3.01
542 562 7.716799 AAACATGAGCCACTATATTTTGGAA 57.283 32.000 0.00 0.00 34.46 3.53
543 563 7.716799 AAAACATGAGCCACTATATTTTGGA 57.283 32.000 0.00 0.00 34.46 3.53
544 564 8.034215 TGAAAAACATGAGCCACTATATTTTGG 58.966 33.333 0.00 0.00 35.81 3.28
545 565 8.984891 TGAAAAACATGAGCCACTATATTTTG 57.015 30.769 0.00 0.00 0.00 2.44
546 566 9.643693 CTTGAAAAACATGAGCCACTATATTTT 57.356 29.630 0.00 0.00 0.00 1.82
547 567 8.253113 CCTTGAAAAACATGAGCCACTATATTT 58.747 33.333 0.00 0.00 0.00 1.40
548 568 7.397192 ACCTTGAAAAACATGAGCCACTATATT 59.603 33.333 0.00 0.00 0.00 1.28
549 569 6.891908 ACCTTGAAAAACATGAGCCACTATAT 59.108 34.615 0.00 0.00 0.00 0.86
550 570 6.245408 ACCTTGAAAAACATGAGCCACTATA 58.755 36.000 0.00 0.00 0.00 1.31
551 571 5.079643 ACCTTGAAAAACATGAGCCACTAT 58.920 37.500 0.00 0.00 0.00 2.12
552 572 4.469657 ACCTTGAAAAACATGAGCCACTA 58.530 39.130 0.00 0.00 0.00 2.74
553 573 3.299503 ACCTTGAAAAACATGAGCCACT 58.700 40.909 0.00 0.00 0.00 4.00
554 574 3.733443 ACCTTGAAAAACATGAGCCAC 57.267 42.857 0.00 0.00 0.00 5.01
555 575 4.211125 TGTACCTTGAAAAACATGAGCCA 58.789 39.130 0.00 0.00 0.00 4.75
556 576 4.846779 TGTACCTTGAAAAACATGAGCC 57.153 40.909 0.00 0.00 0.00 4.70
557 577 5.831997 AGTTGTACCTTGAAAAACATGAGC 58.168 37.500 0.00 0.00 0.00 4.26
558 578 9.796120 TTAAAGTTGTACCTTGAAAAACATGAG 57.204 29.630 0.00 0.00 0.00 2.90
559 579 9.575783 GTTAAAGTTGTACCTTGAAAAACATGA 57.424 29.630 0.00 0.00 0.00 3.07
560 580 8.813282 GGTTAAAGTTGTACCTTGAAAAACATG 58.187 33.333 0.00 0.00 0.00 3.21
561 581 8.532819 TGGTTAAAGTTGTACCTTGAAAAACAT 58.467 29.630 7.85 0.00 33.05 2.71
562 582 7.893658 TGGTTAAAGTTGTACCTTGAAAAACA 58.106 30.769 7.85 0.00 33.05 2.83
563 583 8.936070 ATGGTTAAAGTTGTACCTTGAAAAAC 57.064 30.769 7.85 0.00 33.05 2.43
590 610 8.823818 CGGGAATACAAGATCGTTAGTTAAATT 58.176 33.333 0.00 0.00 0.00 1.82
591 611 7.983484 ACGGGAATACAAGATCGTTAGTTAAAT 59.017 33.333 0.00 0.00 0.00 1.40
592 612 7.322664 ACGGGAATACAAGATCGTTAGTTAAA 58.677 34.615 0.00 0.00 0.00 1.52
593 613 6.866480 ACGGGAATACAAGATCGTTAGTTAA 58.134 36.000 0.00 0.00 0.00 2.01
594 614 6.455360 ACGGGAATACAAGATCGTTAGTTA 57.545 37.500 0.00 0.00 0.00 2.24
595 615 5.334724 ACGGGAATACAAGATCGTTAGTT 57.665 39.130 0.00 0.00 0.00 2.24
596 616 4.497006 CGACGGGAATACAAGATCGTTAGT 60.497 45.833 0.00 0.00 0.00 2.24
597 617 3.973135 CGACGGGAATACAAGATCGTTAG 59.027 47.826 0.00 0.00 0.00 2.34
598 618 3.793129 GCGACGGGAATACAAGATCGTTA 60.793 47.826 0.00 0.00 0.00 3.18
599 619 2.805845 CGACGGGAATACAAGATCGTT 58.194 47.619 0.00 0.00 0.00 3.85
600 620 1.535437 GCGACGGGAATACAAGATCGT 60.535 52.381 0.00 0.00 0.00 3.73
601 621 1.129326 GCGACGGGAATACAAGATCG 58.871 55.000 0.00 0.00 0.00 3.69
602 622 2.128035 CTGCGACGGGAATACAAGATC 58.872 52.381 0.00 0.00 0.00 2.75
603 623 1.480954 ACTGCGACGGGAATACAAGAT 59.519 47.619 0.00 0.00 0.00 2.40
604 624 0.892755 ACTGCGACGGGAATACAAGA 59.107 50.000 0.00 0.00 0.00 3.02
605 625 1.278238 GACTGCGACGGGAATACAAG 58.722 55.000 0.00 0.00 0.00 3.16
606 626 0.457166 CGACTGCGACGGGAATACAA 60.457 55.000 0.00 0.00 40.82 2.41
607 627 1.138036 CGACTGCGACGGGAATACA 59.862 57.895 0.00 0.00 40.82 2.29
608 628 1.588139 CCGACTGCGACGGGAATAC 60.588 63.158 10.40 0.00 45.65 1.89
609 629 2.802792 CCGACTGCGACGGGAATA 59.197 61.111 10.40 0.00 45.65 1.75
615 635 1.660575 AACAAGACCGACTGCGACG 60.661 57.895 0.00 0.00 40.82 5.12
616 636 1.557443 CCAACAAGACCGACTGCGAC 61.557 60.000 0.00 0.00 40.82 5.19
617 637 1.300620 CCAACAAGACCGACTGCGA 60.301 57.895 0.00 0.00 40.82 5.10
618 638 1.157870 AACCAACAAGACCGACTGCG 61.158 55.000 0.00 0.00 37.24 5.18
619 639 1.873698 TAACCAACAAGACCGACTGC 58.126 50.000 0.00 0.00 0.00 4.40
620 640 5.432885 AATTTAACCAACAAGACCGACTG 57.567 39.130 0.00 0.00 0.00 3.51
621 641 7.446013 TCATAAATTTAACCAACAAGACCGACT 59.554 33.333 1.21 0.00 0.00 4.18
622 642 7.586747 TCATAAATTTAACCAACAAGACCGAC 58.413 34.615 1.21 0.00 0.00 4.79
623 643 7.747155 TCATAAATTTAACCAACAAGACCGA 57.253 32.000 1.21 0.00 0.00 4.69
624 644 8.240682 TGATCATAAATTTAACCAACAAGACCG 58.759 33.333 1.21 0.00 0.00 4.79
625 645 9.921637 TTGATCATAAATTTAACCAACAAGACC 57.078 29.630 1.21 0.00 0.00 3.85
667 687 9.139174 CGTTCCAAAATATAGTGCTTCATTTTT 57.861 29.630 0.00 0.00 30.27 1.94
668 688 7.759433 CCGTTCCAAAATATAGTGCTTCATTTT 59.241 33.333 0.00 0.00 32.29 1.82
669 689 7.122055 TCCGTTCCAAAATATAGTGCTTCATTT 59.878 33.333 0.00 0.00 0.00 2.32
670 690 6.601613 TCCGTTCCAAAATATAGTGCTTCATT 59.398 34.615 0.00 0.00 0.00 2.57
671 691 6.119536 TCCGTTCCAAAATATAGTGCTTCAT 58.880 36.000 0.00 0.00 0.00 2.57
672 692 5.492895 TCCGTTCCAAAATATAGTGCTTCA 58.507 37.500 0.00 0.00 0.00 3.02
673 693 5.007724 CCTCCGTTCCAAAATATAGTGCTTC 59.992 44.000 0.00 0.00 0.00 3.86
674 694 4.881850 CCTCCGTTCCAAAATATAGTGCTT 59.118 41.667 0.00 0.00 0.00 3.91
675 695 4.451900 CCTCCGTTCCAAAATATAGTGCT 58.548 43.478 0.00 0.00 0.00 4.40
676 696 3.564225 CCCTCCGTTCCAAAATATAGTGC 59.436 47.826 0.00 0.00 0.00 4.40
677 697 5.031066 TCCCTCCGTTCCAAAATATAGTG 57.969 43.478 0.00 0.00 0.00 2.74
678 698 4.720273 ACTCCCTCCGTTCCAAAATATAGT 59.280 41.667 0.00 0.00 0.00 2.12
679 699 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
680 700 5.901276 ACTACTCCCTCCGTTCCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
681 701 4.720273 ACTACTCCCTCCGTTCCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
682 702 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
683 703 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
684 704 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
685 705 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
686 706 2.042162 ACTACTACTCCCTCCGTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
687 707 1.637553 ACTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
688 708 2.092484 AGACTACTACTCCCTCCGTTCC 60.092 54.545 0.00 0.00 0.00 3.62
689 709 2.944349 CAGACTACTACTCCCTCCGTTC 59.056 54.545 0.00 0.00 0.00 3.95
690 710 2.575279 TCAGACTACTACTCCCTCCGTT 59.425 50.000 0.00 0.00 0.00 4.44
691 711 2.194859 TCAGACTACTACTCCCTCCGT 58.805 52.381 0.00 0.00 0.00 4.69
692 712 3.278668 TTCAGACTACTACTCCCTCCG 57.721 52.381 0.00 0.00 0.00 4.63
693 713 5.997384 TTTTTCAGACTACTACTCCCTCC 57.003 43.478 0.00 0.00 0.00 4.30
779 799 1.078567 GCTCCAGCCTTCAGACCAG 60.079 63.158 0.00 0.00 34.31 4.00
826 846 5.858581 CCAAGATTCTCGCAAAAGTAAAAGG 59.141 40.000 0.00 0.00 0.00 3.11
829 849 6.349280 CCATCCAAGATTCTCGCAAAAGTAAA 60.349 38.462 0.00 0.00 0.00 2.01
830 850 5.123820 CCATCCAAGATTCTCGCAAAAGTAA 59.876 40.000 0.00 0.00 0.00 2.24
831 851 4.635765 CCATCCAAGATTCTCGCAAAAGTA 59.364 41.667 0.00 0.00 0.00 2.24
833 853 3.691118 TCCATCCAAGATTCTCGCAAAAG 59.309 43.478 0.00 0.00 0.00 2.27
835 855 3.273434 CTCCATCCAAGATTCTCGCAAA 58.727 45.455 0.00 0.00 0.00 3.68
836 856 2.910199 CTCCATCCAAGATTCTCGCAA 58.090 47.619 0.00 0.00 0.00 4.85
837 857 1.473965 GCTCCATCCAAGATTCTCGCA 60.474 52.381 0.00 0.00 0.00 5.10
838 858 1.224965 GCTCCATCCAAGATTCTCGC 58.775 55.000 0.00 0.00 0.00 5.03
839 859 2.208431 GTGCTCCATCCAAGATTCTCG 58.792 52.381 0.00 0.00 0.00 4.04
840 860 2.208431 CGTGCTCCATCCAAGATTCTC 58.792 52.381 0.00 0.00 0.00 2.87
841 861 1.745141 GCGTGCTCCATCCAAGATTCT 60.745 52.381 0.00 0.00 0.00 2.40
843 863 0.254178 AGCGTGCTCCATCCAAGATT 59.746 50.000 0.00 0.00 0.00 2.40
844 864 0.463295 CAGCGTGCTCCATCCAAGAT 60.463 55.000 0.00 0.00 0.00 2.40
850 870 3.857854 CGTGCAGCGTGCTCCATC 61.858 66.667 10.54 0.00 45.31 3.51
861 881 3.699894 AGGGAGACAGGCGTGCAG 61.700 66.667 6.26 0.00 0.00 4.41
894 914 0.399233 ACTATGGGTCCCTCTGGCTC 60.399 60.000 10.00 0.00 0.00 4.70
907 2450 6.263168 GTCTCATTGGTCCCATTAAACTATGG 59.737 42.308 0.00 0.00 43.90 2.74
908 2451 6.828273 TGTCTCATTGGTCCCATTAAACTATG 59.172 38.462 0.00 0.00 0.00 2.23
922 2465 2.700371 TGTGAGTCACTGTCTCATTGGT 59.300 45.455 23.29 0.00 42.63 3.67
927 2470 4.433615 GTTTTCTGTGAGTCACTGTCTCA 58.566 43.478 23.29 5.14 39.25 3.27
1437 3384 6.645003 TGGATAGATTTCATAACGGTCGATTG 59.355 38.462 0.00 0.00 0.00 2.67
1441 3388 5.751509 TGTTGGATAGATTTCATAACGGTCG 59.248 40.000 0.00 0.00 0.00 4.79
1575 3523 6.910972 GGAAAGCTTACTACGAATAAAATGCC 59.089 38.462 0.00 0.00 0.00 4.40
1601 3549 1.202989 TGGTACCTGCATTTTCAGCCA 60.203 47.619 14.36 0.00 32.87 4.75
2068 4016 1.665916 CACCTCGTGTGCTCAGGTG 60.666 63.158 10.23 10.23 43.06 4.00
2139 4088 3.265791 GTGGAGCATTCTTACAGACCTG 58.734 50.000 0.00 0.00 0.00 4.00
2402 4351 7.494298 TGAGATAAGATAAACGCATAACAGCAA 59.506 33.333 0.00 0.00 0.00 3.91
2619 4571 5.163468 TGCCAAAACAAAGCTTGAATGACTA 60.163 36.000 0.00 0.00 0.00 2.59
2620 4572 4.122046 GCCAAAACAAAGCTTGAATGACT 58.878 39.130 0.00 0.00 0.00 3.41
2621 4573 3.870419 TGCCAAAACAAAGCTTGAATGAC 59.130 39.130 0.00 0.00 0.00 3.06
2623 4575 3.622163 TGTGCCAAAACAAAGCTTGAATG 59.378 39.130 0.00 0.00 0.00 2.67
2624 4576 3.871485 TGTGCCAAAACAAAGCTTGAAT 58.129 36.364 0.00 0.00 0.00 2.57
2812 4851 4.160065 TGTTATTTGGTTGGATGGCTGATG 59.840 41.667 0.00 0.00 0.00 3.07
2813 4852 4.352009 TGTTATTTGGTTGGATGGCTGAT 58.648 39.130 0.00 0.00 0.00 2.90
2977 5026 6.038825 TCAGTCGTATTTTGTGGTGAAAACAT 59.961 34.615 0.00 0.00 0.00 2.71
3145 5213 4.218312 ACTGGCCCTCAAATAAATGGATC 58.782 43.478 0.00 0.00 0.00 3.36
3152 5220 2.300956 TGCAACTGGCCCTCAAATAA 57.699 45.000 0.00 0.00 43.89 1.40
3158 5226 1.134907 CATCAAATGCAACTGGCCCTC 60.135 52.381 0.00 0.00 43.89 4.30
3695 7993 2.131709 CGGGAAGGCCAGGTCGATA 61.132 63.158 5.01 0.00 35.15 2.92
3706 8004 2.162681 AGAAATTGCACTTCGGGAAGG 58.837 47.619 12.65 3.57 42.53 3.46
3807 8105 1.068194 GTGTCGACTACTTCTGCAGCT 60.068 52.381 17.92 0.00 0.00 4.24
3845 8143 2.225255 GCACCTGTGAAGAAAGAGAAGC 59.775 50.000 0.51 0.00 0.00 3.86
3945 8245 9.133627 CGTATGTGGTCTATATTGAAATCTCTG 57.866 37.037 0.00 0.00 0.00 3.35
3956 8256 5.801531 TTTGCTCCGTATGTGGTCTATAT 57.198 39.130 0.00 0.00 0.00 0.86
3964 8264 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
4086 8386 3.245586 TGACCCATAATGAAAACAGGGCT 60.246 43.478 0.00 0.00 39.97 5.19
4150 8454 5.875910 TCAAACCATTCATCCAATTTCATGC 59.124 36.000 0.00 0.00 0.00 4.06
4181 8485 7.218614 CCATAACGGATTAACAGTATAACCCA 58.781 38.462 0.00 0.00 36.56 4.51
4189 8493 4.081087 AGAGTGCCATAACGGATTAACAGT 60.081 41.667 0.00 0.00 36.56 3.55
4190 8494 4.442706 AGAGTGCCATAACGGATTAACAG 58.557 43.478 0.00 0.00 36.56 3.16
4191 8495 4.481368 AGAGTGCCATAACGGATTAACA 57.519 40.909 0.00 0.00 36.56 2.41
4192 8496 5.598769 ACTAGAGTGCCATAACGGATTAAC 58.401 41.667 0.00 0.00 36.56 2.01
4193 8497 5.864418 ACTAGAGTGCCATAACGGATTAA 57.136 39.130 0.00 0.00 36.56 1.40
4194 8498 5.864418 AACTAGAGTGCCATAACGGATTA 57.136 39.130 0.00 0.00 36.56 1.75
4195 8499 4.755266 AACTAGAGTGCCATAACGGATT 57.245 40.909 0.00 0.00 36.56 3.01
4196 8500 4.081087 ACAAACTAGAGTGCCATAACGGAT 60.081 41.667 0.00 0.00 36.56 4.18
4197 8501 3.259876 ACAAACTAGAGTGCCATAACGGA 59.740 43.478 0.00 0.00 36.56 4.69
4227 8531 6.199937 AGACATATGTTTAGCCAAGCAAAG 57.800 37.500 10.30 0.00 0.00 2.77
4250 8556 7.373617 TGCTGGAACATATCTTAGTCCATAA 57.626 36.000 0.00 0.00 38.20 1.90
4556 8865 6.589907 ACCCAAAACAGAAAAATATCGCAATC 59.410 34.615 0.00 0.00 0.00 2.67
4562 8871 7.384932 CCTGAACACCCAAAACAGAAAAATATC 59.615 37.037 0.00 0.00 0.00 1.63
4930 9262 0.592637 TTCAGCAAGTGCATTGGTCG 59.407 50.000 6.00 7.11 46.55 4.79
5001 9333 6.091169 GCCATTTCACATGGTTCAAGTAAATG 59.909 38.462 0.00 0.00 41.17 2.32
5092 9424 4.537135 AGCGAAAGGAGTGAACATTCTA 57.463 40.909 0.00 0.00 0.00 2.10
5099 9431 1.968493 ACCTGTAGCGAAAGGAGTGAA 59.032 47.619 10.46 0.00 37.01 3.18
5247 9582 4.397420 TCTCCTGTATTCAGCAAAGCAAA 58.603 39.130 0.00 0.00 40.09 3.68
5343 9680 2.093288 CAGCAGACAGGCAAGGAGATAA 60.093 50.000 0.00 0.00 35.83 1.75
5880 10233 4.080356 AGCCTGTTTATAGATTGCCACAGA 60.080 41.667 0.00 0.00 34.74 3.41
5921 10274 6.696583 CACAAAGAACATACAAATTGCAGACA 59.303 34.615 0.00 0.00 0.00 3.41
5922 10275 6.144402 CCACAAAGAACATACAAATTGCAGAC 59.856 38.462 0.00 0.00 0.00 3.51
5923 10276 6.215121 CCACAAAGAACATACAAATTGCAGA 58.785 36.000 0.00 0.00 0.00 4.26
5924 10277 5.107375 GCCACAAAGAACATACAAATTGCAG 60.107 40.000 0.00 0.00 0.00 4.41
5925 10278 4.749099 GCCACAAAGAACATACAAATTGCA 59.251 37.500 0.00 0.00 0.00 4.08
5926 10279 4.990426 AGCCACAAAGAACATACAAATTGC 59.010 37.500 0.00 0.00 0.00 3.56
5927 10280 6.215121 TGAGCCACAAAGAACATACAAATTG 58.785 36.000 0.00 0.00 0.00 2.32
5928 10281 6.403866 TGAGCCACAAAGAACATACAAATT 57.596 33.333 0.00 0.00 0.00 1.82
5929 10282 6.403866 TTGAGCCACAAAGAACATACAAAT 57.596 33.333 0.00 0.00 35.39 2.32
5930 10283 5.843673 TTGAGCCACAAAGAACATACAAA 57.156 34.783 0.00 0.00 35.39 2.83
5931 10284 6.183360 ACAATTGAGCCACAAAGAACATACAA 60.183 34.615 13.59 0.00 42.03 2.41
5932 10285 5.301551 ACAATTGAGCCACAAAGAACATACA 59.698 36.000 13.59 0.00 42.03 2.29
5933 10286 5.772521 ACAATTGAGCCACAAAGAACATAC 58.227 37.500 13.59 0.00 42.03 2.39
5934 10287 5.769662 AGACAATTGAGCCACAAAGAACATA 59.230 36.000 13.59 0.00 42.03 2.29
5935 10288 4.586001 AGACAATTGAGCCACAAAGAACAT 59.414 37.500 13.59 0.00 42.03 2.71
5936 10289 3.953612 AGACAATTGAGCCACAAAGAACA 59.046 39.130 13.59 0.00 42.03 3.18
5937 10290 4.293415 CAGACAATTGAGCCACAAAGAAC 58.707 43.478 13.59 0.00 42.03 3.01
5938 10291 3.243501 GCAGACAATTGAGCCACAAAGAA 60.244 43.478 13.59 0.00 42.03 2.52
5939 10292 2.294233 GCAGACAATTGAGCCACAAAGA 59.706 45.455 13.59 0.00 42.03 2.52
5940 10293 2.034939 TGCAGACAATTGAGCCACAAAG 59.965 45.455 13.59 0.00 42.03 2.77
5941 10294 2.030371 TGCAGACAATTGAGCCACAAA 58.970 42.857 13.59 0.00 42.03 2.83
5942 10295 1.689984 TGCAGACAATTGAGCCACAA 58.310 45.000 13.59 0.00 42.95 3.33
5943 10296 1.689984 TTGCAGACAATTGAGCCACA 58.310 45.000 13.59 0.74 0.00 4.17
5953 10306 6.700960 CAGGAAAACATACAAATTGCAGACAA 59.299 34.615 0.00 0.00 40.87 3.18
5957 10310 7.712264 TTTCAGGAAAACATACAAATTGCAG 57.288 32.000 0.00 0.00 0.00 4.41
6003 10356 3.826466 AGCGCTTCAAACATAAGAAAGC 58.174 40.909 2.64 0.00 0.00 3.51
6235 10592 6.775142 TCTTCTCCAACATCGATCTCTTCTAT 59.225 38.462 0.00 0.00 0.00 1.98
6285 10642 4.460382 TCAAGAGGGATGAATTTGACAAGC 59.540 41.667 0.00 0.00 0.00 4.01
6422 10783 4.261572 GGTTTAAGATTGCAGAGCACACAA 60.262 41.667 0.00 0.00 38.71 3.33
6498 10859 5.567430 GTTCCTTACCTTTGTATGGTCCTT 58.433 41.667 0.00 0.00 41.08 3.36
6584 10951 3.708563 AATGTCAGTTTCCACAAACCG 57.291 42.857 0.00 0.00 42.72 4.44
7169 11536 6.090898 TCGAAAGGCGTCAAATTTTTCAAAAA 59.909 30.769 0.00 0.00 41.80 1.94
7170 11537 5.577164 TCGAAAGGCGTCAAATTTTTCAAAA 59.423 32.000 0.00 0.00 41.80 2.44
7171 11538 5.103000 TCGAAAGGCGTCAAATTTTTCAAA 58.897 33.333 0.00 0.00 41.80 2.69
7172 11539 4.673441 TCGAAAGGCGTCAAATTTTTCAA 58.327 34.783 0.00 0.00 41.80 2.69
7173 11540 4.286910 CTCGAAAGGCGTCAAATTTTTCA 58.713 39.130 0.00 0.00 41.80 2.69
7174 11541 3.119628 GCTCGAAAGGCGTCAAATTTTTC 59.880 43.478 0.00 0.00 41.80 2.29
7175 11542 3.049912 GCTCGAAAGGCGTCAAATTTTT 58.950 40.909 0.00 0.00 41.80 1.94
7176 11543 2.034053 TGCTCGAAAGGCGTCAAATTTT 59.966 40.909 0.00 0.00 41.80 1.82
7177 11544 1.606668 TGCTCGAAAGGCGTCAAATTT 59.393 42.857 0.00 0.00 41.80 1.82
7178 11545 1.069227 GTGCTCGAAAGGCGTCAAATT 60.069 47.619 0.00 0.00 41.80 1.82
7179 11546 0.517316 GTGCTCGAAAGGCGTCAAAT 59.483 50.000 0.00 0.00 41.80 2.32
7221 11588 3.542310 GTGACAAACAACAAGCGTTCTTC 59.458 43.478 0.00 0.00 31.13 2.87
7224 11591 2.159435 AGGTGACAAACAACAAGCGTTC 60.159 45.455 0.00 0.00 38.92 3.95
7225 11592 1.816224 AGGTGACAAACAACAAGCGTT 59.184 42.857 0.00 0.00 38.92 4.84
7226 11593 1.400494 GAGGTGACAAACAACAAGCGT 59.600 47.619 0.00 0.00 38.92 5.07
7227 11594 1.268539 GGAGGTGACAAACAACAAGCG 60.269 52.381 0.00 0.00 38.92 4.68
7228 11595 1.067060 GGGAGGTGACAAACAACAAGC 59.933 52.381 0.00 0.00 38.92 4.01
7229 11596 1.681264 GGGGAGGTGACAAACAACAAG 59.319 52.381 0.00 0.00 38.92 3.16
7230 11597 1.686741 GGGGGAGGTGACAAACAACAA 60.687 52.381 0.00 0.00 38.92 2.83
7231 11598 0.106419 GGGGGAGGTGACAAACAACA 60.106 55.000 0.00 0.00 38.92 3.33
7232 11599 2.728397 GGGGGAGGTGACAAACAAC 58.272 57.895 0.00 0.00 36.27 3.32
7248 11615 1.388133 CTCAAAAAGGGGGAGGGGG 59.612 63.158 0.00 0.00 0.00 5.40
7249 11616 0.251787 CACTCAAAAAGGGGGAGGGG 60.252 60.000 0.00 0.00 32.98 4.79
7250 11617 0.482887 ACACTCAAAAAGGGGGAGGG 59.517 55.000 0.00 0.00 38.06 4.30
7251 11618 2.375509 AGTACACTCAAAAAGGGGGAGG 59.624 50.000 0.00 0.00 29.99 4.30
7252 11619 3.790089 AGTACACTCAAAAAGGGGGAG 57.210 47.619 0.00 0.00 29.99 4.30
7253 11620 4.466827 GAAAGTACACTCAAAAAGGGGGA 58.533 43.478 0.00 0.00 29.99 4.81
7254 11621 3.252458 CGAAAGTACACTCAAAAAGGGGG 59.748 47.826 0.00 0.00 29.99 5.40
7255 11622 3.252458 CCGAAAGTACACTCAAAAAGGGG 59.748 47.826 0.00 0.00 29.99 4.79
7256 11623 3.304458 GCCGAAAGTACACTCAAAAAGGG 60.304 47.826 0.00 0.00 0.00 3.95
7257 11624 3.564225 AGCCGAAAGTACACTCAAAAAGG 59.436 43.478 0.00 0.00 0.00 3.11
7258 11625 4.272504 TGAGCCGAAAGTACACTCAAAAAG 59.727 41.667 0.00 0.00 34.59 2.27
7259 11626 4.193090 TGAGCCGAAAGTACACTCAAAAA 58.807 39.130 0.00 0.00 34.59 1.94
7260 11627 3.799366 TGAGCCGAAAGTACACTCAAAA 58.201 40.909 0.00 0.00 34.59 2.44
7261 11628 3.462483 TGAGCCGAAAGTACACTCAAA 57.538 42.857 0.00 0.00 34.59 2.69
7262 11629 3.128349 GTTGAGCCGAAAGTACACTCAA 58.872 45.455 0.00 0.00 43.18 3.02
7263 11630 2.101750 TGTTGAGCCGAAAGTACACTCA 59.898 45.455 0.00 0.00 35.67 3.41
7264 11631 2.731976 CTGTTGAGCCGAAAGTACACTC 59.268 50.000 0.00 0.00 0.00 3.51
7265 11632 2.102588 ACTGTTGAGCCGAAAGTACACT 59.897 45.455 0.00 0.00 0.00 3.55
7266 11633 2.221055 CACTGTTGAGCCGAAAGTACAC 59.779 50.000 0.00 0.00 0.00 2.90
7267 11634 2.101750 TCACTGTTGAGCCGAAAGTACA 59.898 45.455 0.00 0.00 0.00 2.90
7268 11635 2.731976 CTCACTGTTGAGCCGAAAGTAC 59.268 50.000 0.00 0.00 42.99 2.73
7269 11636 3.026630 CTCACTGTTGAGCCGAAAGTA 57.973 47.619 0.00 0.00 42.99 2.24
7270 11637 1.871080 CTCACTGTTGAGCCGAAAGT 58.129 50.000 0.00 0.00 42.99 2.66
7279 11646 0.032130 GTCTGTCGCCTCACTGTTGA 59.968 55.000 0.00 0.00 0.00 3.18
7280 11647 0.249447 TGTCTGTCGCCTCACTGTTG 60.249 55.000 0.00 0.00 0.00 3.33
7281 11648 0.032678 CTGTCTGTCGCCTCACTGTT 59.967 55.000 0.00 0.00 0.00 3.16
7282 11649 1.662608 CTGTCTGTCGCCTCACTGT 59.337 57.895 0.00 0.00 0.00 3.55
7283 11650 1.080230 CCTGTCTGTCGCCTCACTG 60.080 63.158 0.00 0.00 0.00 3.66
7284 11651 2.936912 GCCTGTCTGTCGCCTCACT 61.937 63.158 0.00 0.00 0.00 3.41
7285 11652 2.433318 GCCTGTCTGTCGCCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
7286 11653 3.695606 GGCCTGTCTGTCGCCTCA 61.696 66.667 0.00 0.00 39.70 3.86
7294 11661 1.227674 GCGGGAATAGGCCTGTCTG 60.228 63.158 17.99 3.86 36.65 3.51
7305 11672 2.361992 GGGGAAAACGGCGGGAAT 60.362 61.111 13.24 0.00 0.00 3.01
7318 11685 1.007607 GAAATGGAGGGAAAGGGGGA 58.992 55.000 0.00 0.00 0.00 4.81
7327 11694 4.081476 GGAAAACAATGAGGAAATGGAGGG 60.081 45.833 0.00 0.00 0.00 4.30
7345 11712 4.354162 CGGGGCGGAAGGGGAAAA 62.354 66.667 0.00 0.00 0.00 2.29
7369 11749 1.459450 GGCCAAATACTTCTTCGGCA 58.541 50.000 0.00 0.00 41.41 5.69
7373 11753 2.289565 CGAGGGGCCAAATACTTCTTC 58.710 52.381 4.39 0.00 0.00 2.87
7394 11774 2.025969 CAGTGCAGTGACAGCGAGG 61.026 63.158 16.94 0.00 33.85 4.63
7396 11776 2.662857 GCAGTGCAGTGACAGCGA 60.663 61.111 25.76 0.00 33.85 4.93
7399 11779 1.226686 GAGTGGCAGTGCAGTGACAG 61.227 60.000 30.55 0.66 35.59 3.51
7400 11780 1.227645 GAGTGGCAGTGCAGTGACA 60.228 57.895 26.52 26.52 30.91 3.58
7401 11781 0.533755 AAGAGTGGCAGTGCAGTGAC 60.534 55.000 25.76 23.52 0.00 3.67
7402 11782 0.533531 CAAGAGTGGCAGTGCAGTGA 60.534 55.000 25.76 1.83 0.00 3.41
7403 11783 0.533531 TCAAGAGTGGCAGTGCAGTG 60.534 55.000 18.61 17.56 0.00 3.66
7404 11784 0.399454 ATCAAGAGTGGCAGTGCAGT 59.601 50.000 18.61 6.02 0.00 4.40
7405 11785 1.467734 GAATCAAGAGTGGCAGTGCAG 59.532 52.381 18.61 0.00 0.00 4.41
7406 11786 1.527034 GAATCAAGAGTGGCAGTGCA 58.473 50.000 18.61 0.00 0.00 4.57
7407 11787 0.807496 GGAATCAAGAGTGGCAGTGC 59.193 55.000 6.55 6.55 0.00 4.40
7408 11788 1.808945 GTGGAATCAAGAGTGGCAGTG 59.191 52.381 0.00 0.00 0.00 3.66
7409 11789 1.271597 GGTGGAATCAAGAGTGGCAGT 60.272 52.381 0.00 0.00 0.00 4.40
7418 11798 0.322456 TTCGGCTGGGTGGAATCAAG 60.322 55.000 0.00 0.00 0.00 3.02
7419 11799 0.322456 CTTCGGCTGGGTGGAATCAA 60.322 55.000 0.00 0.00 0.00 2.57
7420 11800 1.299648 CTTCGGCTGGGTGGAATCA 59.700 57.895 0.00 0.00 0.00 2.57
7432 11812 2.094762 TCAGCTTCCTTTACTTCGGC 57.905 50.000 0.00 0.00 0.00 5.54
7435 11815 3.347216 TGCCATCAGCTTCCTTTACTTC 58.653 45.455 0.00 0.00 44.23 3.01
7437 11817 3.009473 TCTTGCCATCAGCTTCCTTTACT 59.991 43.478 0.00 0.00 44.23 2.24
7439 11819 3.347216 GTCTTGCCATCAGCTTCCTTTA 58.653 45.455 0.00 0.00 44.23 1.85
7441 11821 1.615384 GGTCTTGCCATCAGCTTCCTT 60.615 52.381 0.00 0.00 44.23 3.36
7455 11844 1.097547 GGACATGCCCGATGGTCTTG 61.098 60.000 0.00 0.00 36.23 3.02
7458 11847 1.077787 TTGGACATGCCCGATGGTC 60.078 57.895 0.00 0.00 36.23 4.02
7463 11852 4.015406 AGCGTTGGACATGCCCGA 62.015 61.111 0.00 0.00 38.31 5.14
7464 11853 3.803082 CAGCGTTGGACATGCCCG 61.803 66.667 0.00 0.00 38.31 6.13
7469 11858 1.609061 CCTTCACTCAGCGTTGGACAT 60.609 52.381 0.00 0.00 0.00 3.06
7480 11869 1.415672 AAACCTCCGCCCTTCACTCA 61.416 55.000 0.00 0.00 0.00 3.41
7486 11875 2.267961 CGCTAAACCTCCGCCCTT 59.732 61.111 0.00 0.00 0.00 3.95
7499 11888 3.461773 GACAGCCTCCCAGCGCTA 61.462 66.667 10.99 0.00 38.01 4.26
7505 11894 2.659063 CGATGGTGACAGCCTCCCA 61.659 63.158 1.47 0.00 46.20 4.37
7508 11897 1.153549 GGTCGATGGTGACAGCCTC 60.154 63.158 1.47 0.83 46.20 4.70
7518 11907 1.372997 CTATTCCGCCGGTCGATGG 60.373 63.158 17.96 6.22 41.67 3.51
7521 11910 3.908081 GCCTATTCCGCCGGTCGA 61.908 66.667 17.96 4.25 41.67 4.20
7527 11916 2.029844 GCGATGAGCCTATTCCGCC 61.030 63.158 0.00 0.00 40.81 6.13
7542 11931 1.305802 TCCCTGGCCTTCTTAGCGA 60.306 57.895 3.32 0.00 0.00 4.93
7543 11932 1.153349 GTCCCTGGCCTTCTTAGCG 60.153 63.158 3.32 0.00 0.00 4.26
7546 11935 1.899437 CTGCGTCCCTGGCCTTCTTA 61.899 60.000 3.32 0.00 0.00 2.10
7573 11968 2.291190 GTGAGACGTATCTGCCTACTCC 59.709 54.545 12.03 0.00 34.34 3.85
7577 11972 2.623416 CCATGTGAGACGTATCTGCCTA 59.377 50.000 12.03 0.00 34.34 3.93
7583 11978 2.628178 TCATCCCCATGTGAGACGTATC 59.372 50.000 2.50 2.50 0.00 2.24
7586 11981 1.139654 CATCATCCCCATGTGAGACGT 59.860 52.381 0.00 0.00 0.00 4.34
7596 11991 1.165907 GCGCGAATTCATCATCCCCA 61.166 55.000 12.10 0.00 0.00 4.96
7620 12015 0.246635 CGTAGCTTGTGGGCAGTAGT 59.753 55.000 0.00 0.00 34.17 2.73
7621 12016 0.246635 ACGTAGCTTGTGGGCAGTAG 59.753 55.000 0.00 0.00 34.17 2.57
7622 12017 0.245539 GACGTAGCTTGTGGGCAGTA 59.754 55.000 0.00 0.00 34.17 2.74
7626 12021 2.813908 CCGACGTAGCTTGTGGGC 60.814 66.667 6.85 0.00 0.00 5.36
7630 12025 3.003113 GCTCCCCGACGTAGCTTGT 62.003 63.158 0.00 0.00 33.40 3.16
7632 12027 3.459063 GGCTCCCCGACGTAGCTT 61.459 66.667 7.17 0.00 36.48 3.74
7633 12028 4.753662 TGGCTCCCCGACGTAGCT 62.754 66.667 7.17 0.00 36.48 3.32
7663 12058 2.998949 GAGAAGTTGGCCGGGGAT 59.001 61.111 2.18 0.00 0.00 3.85
7735 12130 2.235016 GGGTTGAAACTACCATGTGCA 58.765 47.619 0.00 0.00 37.40 4.57
7736 12131 1.544246 GGGGTTGAAACTACCATGTGC 59.456 52.381 0.00 0.00 37.40 4.57
7738 12133 3.227614 GTTGGGGTTGAAACTACCATGT 58.772 45.455 9.75 0.00 37.40 3.21
7747 12142 2.593026 GAGGTGATGTTGGGGTTGAAA 58.407 47.619 0.00 0.00 0.00 2.69
7751 12146 1.774300 GGGAGGTGATGTTGGGGTT 59.226 57.895 0.00 0.00 0.00 4.11
7786 12181 3.721706 CCAGAGGGGGAGGCACAC 61.722 72.222 0.00 0.00 0.00 3.82
7801 12196 2.144078 TTGGTCGGTCTTCAGGCCA 61.144 57.895 5.01 0.00 41.35 5.36
7810 12205 2.737376 GGAGTGCGTTGGTCGGTC 60.737 66.667 0.00 0.00 40.26 4.79
7811 12206 4.309950 GGGAGTGCGTTGGTCGGT 62.310 66.667 0.00 0.00 40.26 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.