Multiple sequence alignment - TraesCS4A01G077900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G077900 chr4A 100.000 7070 0 0 1 7070 77090071 77097140 0.000000e+00 13056.0
1 TraesCS4A01G077900 chr4D 93.621 2367 114 21 4726 7070 395957386 395959737 0.000000e+00 3500.0
2 TraesCS4A01G077900 chr4D 94.853 680 24 3 656 1325 395947726 395948404 0.000000e+00 1051.0
3 TraesCS4A01G077900 chr4D 95.559 653 28 1 3603 4254 395950837 395951489 0.000000e+00 1044.0
4 TraesCS4A01G077900 chr4D 95.208 480 21 2 4255 4732 395951462 395951941 0.000000e+00 758.0
5 TraesCS4A01G077900 chr4D 93.333 510 32 2 2997 3505 395950355 395950863 0.000000e+00 752.0
6 TraesCS4A01G077900 chr4D 96.907 291 9 0 1 291 25458469 25458759 8.240000e-134 488.0
7 TraesCS4A01G077900 chr4D 93.594 281 16 1 2088 2368 395949464 395949742 1.100000e-112 418.0
8 TraesCS4A01G077900 chr4D 89.474 342 16 4 2634 2957 395950011 395950350 1.420000e-111 414.0
9 TraesCS4A01G077900 chr4D 93.671 237 15 0 1504 1740 395948686 395948922 8.720000e-94 355.0
10 TraesCS4A01G077900 chr4D 90.385 208 10 5 1888 2095 395949016 395949213 1.510000e-66 265.0
11 TraesCS4A01G077900 chr4D 91.534 189 15 1 2436 2624 395949765 395949952 7.040000e-65 259.0
12 TraesCS4A01G077900 chr4D 93.960 149 9 0 1355 1503 395948403 395948551 7.140000e-55 226.0
13 TraesCS4A01G077900 chr4D 84.713 157 23 1 5498 5654 82727680 82727525 9.500000e-34 156.0
14 TraesCS4A01G077900 chr4D 90.678 118 8 2 5497 5614 405052922 405052808 3.420000e-33 154.0
15 TraesCS4A01G077900 chr4D 81.595 163 24 5 5500 5659 94865671 94865830 5.760000e-26 130.0
16 TraesCS4A01G077900 chr4D 96.875 32 1 0 5622 5653 74079475 74079506 4.000000e-03 54.7
17 TraesCS4A01G077900 chr4B 94.869 1871 79 7 663 2520 487267881 487269747 0.000000e+00 2907.0
18 TraesCS4A01G077900 chr4B 92.023 1755 83 21 3622 5357 487271004 487272720 0.000000e+00 2412.0
19 TraesCS4A01G077900 chr4B 93.321 1587 69 12 5343 6915 487272737 487274300 0.000000e+00 2309.0
20 TraesCS4A01G077900 chr4B 92.468 1009 38 18 2516 3505 487269826 487270815 0.000000e+00 1408.0
21 TraesCS4A01G077900 chr4B 93.684 380 8 2 1 380 640819396 640819033 8.010000e-154 555.0
22 TraesCS4A01G077900 chr4B 92.281 285 7 9 358 638 640818998 640818725 2.390000e-104 390.0
23 TraesCS4A01G077900 chr4B 90.244 164 14 2 5490 5653 146469375 146469214 5.560000e-51 213.0
24 TraesCS4A01G077900 chr4B 94.495 109 6 0 3494 3602 249050355 249050247 1.220000e-37 169.0
25 TraesCS4A01G077900 chr4B 90.625 128 10 2 3495 3621 639449939 639450065 1.220000e-37 169.0
26 TraesCS4A01G077900 chr5A 93.684 380 8 2 1 380 527390573 527390210 8.010000e-154 555.0
27 TraesCS4A01G077900 chr5A 93.684 380 8 2 1 380 527396587 527396950 8.010000e-154 555.0
28 TraesCS4A01G077900 chr5A 91.930 285 8 9 358 638 527396984 527397257 1.110000e-102 385.0
29 TraesCS4A01G077900 chr5A 91.228 285 10 9 358 638 527390177 527389904 2.410000e-99 374.0
30 TraesCS4A01G077900 chr5A 88.608 158 16 2 5498 5655 277725936 277726091 2.600000e-44 191.0
31 TraesCS4A01G077900 chr5A 90.984 122 10 1 3494 3615 698909208 698909088 5.670000e-36 163.0
32 TraesCS4A01G077900 chr5A 92.857 42 3 0 6329 6370 594384886 594384845 2.130000e-05 62.1
33 TraesCS4A01G077900 chr1B 93.421 380 9 2 1 380 506625408 506625045 3.730000e-152 549.0
34 TraesCS4A01G077900 chr1B 95.724 304 8 1 1 304 44362355 44362653 1.070000e-132 484.0
35 TraesCS4A01G077900 chr1B 91.930 285 8 9 358 638 506625012 506624739 1.110000e-102 385.0
36 TraesCS4A01G077900 chr1B 91.228 285 10 9 358 638 44362818 44363091 2.410000e-99 374.0
37 TraesCS4A01G077900 chr1B 87.898 157 17 2 5501 5656 507851897 507851742 4.360000e-42 183.0
38 TraesCS4A01G077900 chr1B 95.082 61 2 1 320 380 44362724 44362783 2.100000e-15 95.3
39 TraesCS4A01G077900 chr6B 96.386 332 10 2 1 331 239299178 239298848 4.820000e-151 545.0
40 TraesCS4A01G077900 chr6B 90.244 287 12 10 358 638 239298658 239298382 1.870000e-95 361.0
41 TraesCS4A01G077900 chr6B 88.961 154 15 2 5498 5651 468734617 468734466 9.360000e-44 189.0
42 TraesCS4A01G077900 chr6B 96.721 61 1 1 320 380 239298751 239298692 4.510000e-17 100.0
43 TraesCS4A01G077900 chr2D 95.876 291 12 0 1 291 19014466 19014756 8.300000e-129 472.0
44 TraesCS4A01G077900 chr2D 91.129 124 9 2 1743 1864 381869735 381869612 4.390000e-37 167.0
45 TraesCS4A01G077900 chr2D 90.551 127 10 2 1729 1855 610294538 610294414 4.390000e-37 167.0
46 TraesCS4A01G077900 chr2D 86.164 159 15 6 5498 5651 602511355 602511511 1.580000e-36 165.0
47 TraesCS4A01G077900 chr2D 91.525 118 10 0 1743 1860 158283403 158283286 5.670000e-36 163.0
48 TraesCS4A01G077900 chr2D 94.737 57 1 1 582 638 36275232 36275178 3.510000e-13 87.9
49 TraesCS4A01G077900 chr7D 96.797 281 9 0 1 281 383296959 383297239 2.990000e-128 470.0
50 TraesCS4A01G077900 chr7D 87.288 236 14 8 396 615 383297454 383297689 9.100000e-64 255.0
51 TraesCS4A01G077900 chr7D 87.662 154 18 1 5498 5651 623793585 623793433 2.030000e-40 178.0
52 TraesCS4A01G077900 chr7D 94.495 109 6 0 3494 3602 299189140 299189248 1.220000e-37 169.0
53 TraesCS4A01G077900 chr7D 84.868 152 19 4 5500 5649 485101330 485101479 4.420000e-32 150.0
54 TraesCS4A01G077900 chr7D 84.722 144 21 1 5509 5652 28874402 28874544 7.390000e-30 143.0
55 TraesCS4A01G077900 chr2B 90.263 380 6 9 1 380 27902447 27902099 1.070000e-127 468.0
56 TraesCS4A01G077900 chr2B 92.281 285 7 9 358 638 27902066 27901793 2.390000e-104 390.0
57 TraesCS4A01G077900 chr2B 90.260 154 14 1 5498 5651 566624816 566624968 4.330000e-47 200.0
58 TraesCS4A01G077900 chr2B 94.495 109 6 0 3494 3602 601733416 601733524 1.220000e-37 169.0
59 TraesCS4A01G077900 chr2B 87.879 132 14 2 1733 1862 799382909 799382778 3.420000e-33 154.0
60 TraesCS4A01G077900 chr2A 87.534 369 15 14 6488 6847 125616892 125616546 1.430000e-106 398.0
61 TraesCS4A01G077900 chr2A 92.568 148 10 1 396 542 118454192 118454339 2.000000e-50 211.0
62 TraesCS4A01G077900 chr2A 90.506 158 14 1 5493 5650 549290431 549290275 2.580000e-49 207.0
63 TraesCS4A01G077900 chr2A 86.525 141 18 1 6834 6973 125611662 125611522 3.420000e-33 154.0
64 TraesCS4A01G077900 chr2A 97.368 38 1 0 6919 6956 73927781 73927818 1.650000e-06 65.8
65 TraesCS4A01G077900 chr2A 97.143 35 1 0 624 658 562606653 562606687 7.660000e-05 60.2
66 TraesCS4A01G077900 chr7A 91.304 161 11 3 5493 5652 579808531 579808373 4.290000e-52 217.0
67 TraesCS4A01G077900 chr3B 89.441 161 16 1 5491 5651 528176349 528176190 1.200000e-47 202.0
68 TraesCS4A01G077900 chr3B 89.610 154 14 2 5498 5651 217998252 217998403 2.010000e-45 195.0
69 TraesCS4A01G077900 chr3A 89.744 156 14 2 5498 5651 310691933 310692088 1.560000e-46 198.0
70 TraesCS4A01G077900 chr5D 87.006 177 19 4 5479 5655 213477852 213478024 5.590000e-46 196.0
71 TraesCS4A01G077900 chr5D 87.898 157 18 1 5485 5641 283009674 283009829 4.360000e-42 183.0
72 TraesCS4A01G077900 chr5D 94.495 109 6 0 3494 3602 483269376 483269484 1.220000e-37 169.0
73 TraesCS4A01G077900 chr6A 89.610 154 15 1 5498 5651 118284204 118284356 2.010000e-45 195.0
74 TraesCS4A01G077900 chr1A 88.608 158 16 2 5498 5655 361357566 361357411 2.600000e-44 191.0
75 TraesCS4A01G077900 chr1A 88.387 155 17 1 5499 5653 465505095 465505248 1.210000e-42 185.0
76 TraesCS4A01G077900 chr1A 87.898 157 17 2 5501 5656 479836236 479836081 4.360000e-42 183.0
77 TraesCS4A01G077900 chr1D 86.624 157 19 2 5501 5656 379141423 379141268 9.430000e-39 172.0
78 TraesCS4A01G077900 chr1D 86.928 153 19 1 5499 5651 325485816 325485967 3.390000e-38 171.0
79 TraesCS4A01G077900 chr1D 90.083 121 12 0 1735 1855 284915949 284915829 2.640000e-34 158.0
80 TraesCS4A01G077900 chr1D 82.390 159 23 4 5498 5656 111856939 111857092 4.450000e-27 134.0
81 TraesCS4A01G077900 chr1D 83.453 139 17 5 5497 5633 267597434 267597568 2.680000e-24 124.0
82 TraesCS4A01G077900 chrUn 94.495 109 6 0 3494 3602 310882992 310883100 1.220000e-37 169.0
83 TraesCS4A01G077900 chrUn 86.607 112 15 0 5503 5614 60954833 60954944 2.680000e-24 124.0
84 TraesCS4A01G077900 chrUn 97.222 36 1 0 624 659 122084936 122084971 2.130000e-05 62.1
85 TraesCS4A01G077900 chr7B 90.476 126 10 2 3494 3617 690699475 690699600 1.580000e-36 165.0
86 TraesCS4A01G077900 chr7B 87.770 139 16 1 1725 1863 252178043 252178180 2.040000e-35 161.0
87 TraesCS4A01G077900 chr5B 93.636 110 7 0 3494 3603 147439700 147439809 1.580000e-36 165.0
88 TraesCS4A01G077900 chr5B 87.143 140 16 2 1723 1862 6886384 6886521 2.640000e-34 158.0
89 TraesCS4A01G077900 chr5B 89.855 69 2 2 582 650 273308432 273308495 4.540000e-12 84.2
90 TraesCS4A01G077900 chr3D 89.683 126 13 0 1733 1858 208640712 208640587 2.040000e-35 161.0
91 TraesCS4A01G077900 chr3D 96.875 32 1 0 5622 5653 376262401 376262432 4.000000e-03 54.7
92 TraesCS4A01G077900 chr6D 91.176 102 8 1 5498 5598 426888228 426888329 3.440000e-28 137.0
93 TraesCS4A01G077900 chr6D 85.393 89 13 0 5498 5586 690954 691042 7.550000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G077900 chr4A 77090071 77097140 7069 False 13056.000000 13056 100.000000 1 7070 1 chr4A.!!$F1 7069
1 TraesCS4A01G077900 chr4D 395957386 395959737 2351 False 3500.000000 3500 93.621000 4726 7070 1 chr4D.!!$F4 2344
2 TraesCS4A01G077900 chr4D 395947726 395951941 4215 False 554.200000 1051 93.157100 656 4732 10 chr4D.!!$F5 4076
3 TraesCS4A01G077900 chr4B 487267881 487274300 6419 False 2259.000000 2907 93.170250 663 6915 4 chr4B.!!$F2 6252
4 TraesCS4A01G077900 chr4B 640818725 640819396 671 True 472.500000 555 92.982500 1 638 2 chr4B.!!$R3 637
5 TraesCS4A01G077900 chr5A 527396587 527397257 670 False 470.000000 555 92.807000 1 638 2 chr5A.!!$F2 637
6 TraesCS4A01G077900 chr5A 527389904 527390573 669 True 464.500000 555 92.456000 1 638 2 chr5A.!!$R3 637
7 TraesCS4A01G077900 chr1B 506624739 506625408 669 True 467.000000 549 92.675500 1 638 2 chr1B.!!$R2 637
8 TraesCS4A01G077900 chr1B 44362355 44363091 736 False 317.766667 484 94.011333 1 638 3 chr1B.!!$F1 637
9 TraesCS4A01G077900 chr6B 239298382 239299178 796 True 335.333333 545 94.450333 1 638 3 chr6B.!!$R2 637
10 TraesCS4A01G077900 chr7D 383296959 383297689 730 False 362.500000 470 92.042500 1 615 2 chr7D.!!$F4 614
11 TraesCS4A01G077900 chr2B 27901793 27902447 654 True 429.000000 468 91.272000 1 638 2 chr2B.!!$R2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 903 0.253610 TGACAACCAAACAGTCGGGT 59.746 50.0 0.00 0.00 35.09 5.28 F
632 905 0.253610 ACAACCAAACAGTCGGGTGA 59.746 50.0 12.94 0.00 43.08 4.02 F
633 906 0.661020 CAACCAAACAGTCGGGTGAC 59.339 55.0 1.30 0.00 43.08 3.67 F
2291 2985 0.524862 CTGAACTGTGGAATGGCTGC 59.475 55.0 0.00 0.00 0.00 5.25 F
2416 3110 0.967662 CATGGGTGTGCAATGTCCAA 59.032 50.0 0.00 0.00 0.00 3.53 F
3554 4399 0.606604 TAGACCCAAAGCAGTCGGAC 59.393 55.0 0.00 0.00 38.08 4.79 F
3943 5001 0.251787 ACCCCTCAGGAACAATTGGC 60.252 55.0 10.83 1.05 39.89 4.52 F
5430 6521 0.693049 ACCCTGGCTGATTTCGAAGT 59.307 50.0 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2200 2894 1.128692 GCGGTCTGTATGAACTGCAAC 59.871 52.381 1.62 0.00 34.04 4.17 R
2201 2895 1.438651 GCGGTCTGTATGAACTGCAA 58.561 50.000 1.62 0.00 34.04 4.08 R
2597 3375 1.949525 CCTGCCGGTCCAAAATATGAG 59.050 52.381 1.90 0.00 0.00 2.90 R
3509 4354 0.457443 GCAGCCTTGCCCTACATTTC 59.543 55.000 0.00 0.00 44.74 2.17 R
3595 4440 0.606401 TGCTAACAGAACAGGCAGCC 60.606 55.000 1.84 1.84 0.00 4.85 R
5400 6491 0.250424 AGCCAGGGTTTGCAAATTGC 60.250 50.000 16.21 11.58 45.29 3.56 R
5553 6647 2.480419 GTGGTTCACTCATTTCAGTCCG 59.520 50.000 0.00 0.00 0.00 4.79 R
7040 8153 0.236711 GATGACGCATACATGGCAGC 59.763 55.000 0.00 0.00 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 0.874390 GAAGCCGTGCAACTCAATCA 59.126 50.000 0.00 0.00 31.75 2.57
197 198 6.762661 GGCGGTAATTGGTATTTGTTCTAGTA 59.237 38.462 0.00 0.00 0.00 1.82
425 678 7.776969 AGATATTGTGCTCTTGGAATGTTATGT 59.223 33.333 0.00 0.00 0.00 2.29
428 681 7.701539 TTGTGCTCTTGGAATGTTATGTATT 57.298 32.000 0.00 0.00 0.00 1.89
591 864 6.873076 CACATGCATTATTTTAAGGTGTGGTT 59.127 34.615 0.00 0.00 32.91 3.67
628 901 0.661020 GGTGACAACCAAACAGTCGG 59.339 55.000 0.00 0.00 46.75 4.79
630 903 0.253610 TGACAACCAAACAGTCGGGT 59.746 50.000 0.00 0.00 35.09 5.28
631 904 0.661020 GACAACCAAACAGTCGGGTG 59.339 55.000 5.60 5.60 46.03 4.61
632 905 0.253610 ACAACCAAACAGTCGGGTGA 59.746 50.000 12.94 0.00 43.08 4.02
633 906 0.661020 CAACCAAACAGTCGGGTGAC 59.339 55.000 1.30 0.00 43.08 3.67
644 917 2.353323 GTCGGGTGACTTATTGGAACC 58.647 52.381 0.00 0.00 42.08 3.62
645 918 1.979308 TCGGGTGACTTATTGGAACCA 59.021 47.619 0.00 0.00 32.28 3.67
646 919 2.372504 TCGGGTGACTTATTGGAACCAA 59.627 45.455 8.75 8.75 40.47 3.67
647 920 3.150767 CGGGTGACTTATTGGAACCAAA 58.849 45.455 10.36 0.00 39.55 3.28
648 921 3.057806 CGGGTGACTTATTGGAACCAAAC 60.058 47.826 10.36 3.26 39.55 2.93
649 922 3.892588 GGGTGACTTATTGGAACCAAACA 59.107 43.478 10.36 0.00 39.55 2.83
650 923 4.526650 GGGTGACTTATTGGAACCAAACAT 59.473 41.667 10.36 0.00 39.55 2.71
651 924 5.469479 GGTGACTTATTGGAACCAAACATG 58.531 41.667 10.36 6.63 39.55 3.21
652 925 4.923281 GTGACTTATTGGAACCAAACATGC 59.077 41.667 10.36 2.16 39.55 4.06
653 926 4.832266 TGACTTATTGGAACCAAACATGCT 59.168 37.500 10.36 0.00 39.55 3.79
654 927 5.048083 TGACTTATTGGAACCAAACATGCTC 60.048 40.000 10.36 2.47 39.55 4.26
918 1201 0.824759 CCGGATCCTTCCTTCGTTCT 59.175 55.000 10.75 0.00 40.17 3.01
1237 1523 2.876091 TCGTCGATTGAACATGAGGAC 58.124 47.619 0.00 0.00 0.00 3.85
1279 1565 2.228103 AGATTGCAGCTCATGTTGTGTG 59.772 45.455 0.00 0.00 0.00 3.82
1286 1572 2.813061 GCTCATGTTGTGTGCTTTTGT 58.187 42.857 0.00 0.00 42.53 2.83
1288 1574 3.243643 GCTCATGTTGTGTGCTTTTGTTC 59.756 43.478 0.00 0.00 42.53 3.18
1339 1625 5.179533 TGTATAGCTCGTGGTTGCATTTTA 58.820 37.500 0.00 0.00 0.00 1.52
1359 1645 9.696917 CATTTTATTTCTTGGTTAGTTCTTGCT 57.303 29.630 0.00 0.00 0.00 3.91
1365 1651 6.360370 TCTTGGTTAGTTCTTGCTAGTGAT 57.640 37.500 0.00 0.00 0.00 3.06
1576 1997 4.706035 TGTGAATTGCTTGGATTGCTTTT 58.294 34.783 0.00 0.00 0.00 2.27
1649 2070 8.843885 ATAAGAACTTTCTGTAGGGTTTACAC 57.156 34.615 0.00 0.00 37.65 2.90
1775 2196 5.294552 GGAAATACTTGTCGGAGAAATGGAG 59.705 44.000 0.00 0.00 39.69 3.86
1839 2260 9.696917 ACATCAATTTCTTCAACAAGTATTTCC 57.303 29.630 0.00 0.00 0.00 3.13
2200 2894 5.050769 GGATATGACTGCGTCAAGTAACATG 60.051 44.000 13.81 0.00 45.96 3.21
2201 2895 3.106242 TGACTGCGTCAAGTAACATGT 57.894 42.857 8.59 0.00 39.78 3.21
2291 2985 0.524862 CTGAACTGTGGAATGGCTGC 59.475 55.000 0.00 0.00 0.00 5.25
2340 3034 3.957497 ACCCTCTGCTACTATGACAAGAG 59.043 47.826 0.00 0.00 0.00 2.85
2416 3110 0.967662 CATGGGTGTGCAATGTCCAA 59.032 50.000 0.00 0.00 0.00 3.53
2597 3375 8.542953 CCTTTTTGCTTTTGTAAATCTGACTTC 58.457 33.333 0.00 0.00 34.19 3.01
2681 3508 1.376683 GTTACACGGCATGGGAGCA 60.377 57.895 0.00 0.00 35.83 4.26
2741 3568 1.907739 GGCCTAGATGACAGCCACA 59.092 57.895 0.00 0.00 45.07 4.17
2783 3610 8.369424 TGCCTAATTGATGGATGGATTAAAATG 58.631 33.333 0.00 0.00 0.00 2.32
2815 3642 4.740205 CACATAGTGCATACTTAGTGGTCG 59.260 45.833 0.00 0.00 37.09 4.79
2916 3761 8.410141 CCTTTTGTACTGTTTGATAACCAGAAA 58.590 33.333 0.00 0.00 33.15 2.52
2940 3785 1.203125 TGGTCCTGAATTGGGGGTTTC 60.203 52.381 0.00 0.00 0.00 2.78
2948 3793 5.483583 CCTGAATTGGGGGTTTCATTTAGAA 59.516 40.000 0.00 0.00 31.83 2.10
2971 3816 8.865090 AGAAGGGTCATAAGTCATAACTCATAG 58.135 37.037 0.00 0.00 33.48 2.23
2988 3833 6.578023 ACTCATAGAGTGAAAGGCTCATAAC 58.422 40.000 0.00 0.00 41.76 1.89
3067 3912 6.148948 TCAAATAGTGAACTTGAAATTGGCG 58.851 36.000 0.00 0.00 31.51 5.69
3134 3979 6.997655 TGTCTATTCCTATTGCCTGTGATAG 58.002 40.000 0.00 0.00 0.00 2.08
3158 4003 4.998671 TGTTTTGTTTGGCAGAATGAGA 57.001 36.364 0.00 0.00 39.69 3.27
3253 4098 4.178545 AGTTGCCATGAGTTAATGTTGC 57.821 40.909 0.00 0.00 0.00 4.17
3267 4112 3.831637 TTGCTGGCAAGGGTGGGT 61.832 61.111 3.72 0.00 0.00 4.51
3345 4190 2.031682 GCAATCTAGCTGGGCATAAACG 60.032 50.000 0.00 0.00 0.00 3.60
3416 4261 1.839994 TCCCATGATCAGTCTGAACCC 59.160 52.381 6.64 0.25 0.00 4.11
3497 4342 7.095523 GCATGTTTTGTTCTGTTAGCATGAAAT 60.096 33.333 0.00 0.00 35.76 2.17
3498 4343 9.409312 CATGTTTTGTTCTGTTAGCATGAAATA 57.591 29.630 0.00 0.00 35.76 1.40
3499 4344 9.630098 ATGTTTTGTTCTGTTAGCATGAAATAG 57.370 29.630 0.00 0.00 0.00 1.73
3500 4345 7.594758 TGTTTTGTTCTGTTAGCATGAAATAGC 59.405 33.333 0.00 0.00 0.00 2.97
3501 4346 5.818136 TGTTCTGTTAGCATGAAATAGCC 57.182 39.130 0.00 0.00 0.00 3.93
3502 4347 5.500234 TGTTCTGTTAGCATGAAATAGCCT 58.500 37.500 0.00 0.00 0.00 4.58
3503 4348 5.586243 TGTTCTGTTAGCATGAAATAGCCTC 59.414 40.000 0.00 0.00 0.00 4.70
3504 4349 5.620738 TCTGTTAGCATGAAATAGCCTCT 57.379 39.130 0.00 0.00 0.00 3.69
3505 4350 5.994250 TCTGTTAGCATGAAATAGCCTCTT 58.006 37.500 0.00 0.00 0.00 2.85
3506 4351 5.819379 TCTGTTAGCATGAAATAGCCTCTTG 59.181 40.000 0.00 0.00 0.00 3.02
3507 4352 4.883585 TGTTAGCATGAAATAGCCTCTTGG 59.116 41.667 0.00 0.00 0.00 3.61
3508 4353 3.939740 AGCATGAAATAGCCTCTTGGA 57.060 42.857 0.00 0.00 34.57 3.53
3509 4354 3.818180 AGCATGAAATAGCCTCTTGGAG 58.182 45.455 0.00 0.00 34.57 3.86
3510 4355 3.457380 AGCATGAAATAGCCTCTTGGAGA 59.543 43.478 0.00 0.00 34.57 3.71
3511 4356 4.080129 AGCATGAAATAGCCTCTTGGAGAA 60.080 41.667 0.00 0.00 34.57 2.87
3512 4357 4.641989 GCATGAAATAGCCTCTTGGAGAAA 59.358 41.667 0.00 0.00 34.57 2.52
3513 4358 5.301298 GCATGAAATAGCCTCTTGGAGAAAT 59.699 40.000 0.00 0.00 34.57 2.17
3514 4359 6.735145 GCATGAAATAGCCTCTTGGAGAAATG 60.735 42.308 0.00 0.00 34.57 2.32
3515 4360 5.819991 TGAAATAGCCTCTTGGAGAAATGT 58.180 37.500 0.00 0.00 34.57 2.71
3516 4361 6.957631 TGAAATAGCCTCTTGGAGAAATGTA 58.042 36.000 0.00 0.00 34.57 2.29
3517 4362 7.050377 TGAAATAGCCTCTTGGAGAAATGTAG 58.950 38.462 0.00 0.00 34.57 2.74
3518 4363 3.922171 AGCCTCTTGGAGAAATGTAGG 57.078 47.619 0.00 0.00 34.57 3.18
3519 4364 2.507471 AGCCTCTTGGAGAAATGTAGGG 59.493 50.000 0.00 0.00 34.57 3.53
3520 4365 2.924421 CCTCTTGGAGAAATGTAGGGC 58.076 52.381 0.00 0.00 34.57 5.19
3521 4366 2.239654 CCTCTTGGAGAAATGTAGGGCA 59.760 50.000 0.00 0.00 34.57 5.36
3522 4367 3.308402 CCTCTTGGAGAAATGTAGGGCAA 60.308 47.826 0.00 0.00 34.57 4.52
3523 4368 3.944015 CTCTTGGAGAAATGTAGGGCAAG 59.056 47.826 0.00 0.00 0.00 4.01
3524 4369 2.806945 TGGAGAAATGTAGGGCAAGG 57.193 50.000 0.00 0.00 0.00 3.61
3525 4370 1.340991 TGGAGAAATGTAGGGCAAGGC 60.341 52.381 0.00 0.00 0.00 4.35
3526 4371 1.064389 GGAGAAATGTAGGGCAAGGCT 60.064 52.381 0.00 0.00 0.00 4.58
3527 4372 2.019984 GAGAAATGTAGGGCAAGGCTG 58.980 52.381 0.00 0.00 0.00 4.85
3538 4383 2.795175 GCAAGGCTGCGTACTATAGA 57.205 50.000 6.78 0.00 39.20 1.98
3539 4384 2.395654 GCAAGGCTGCGTACTATAGAC 58.604 52.381 6.78 0.00 39.20 2.59
3540 4385 2.862921 GCAAGGCTGCGTACTATAGACC 60.863 54.545 6.78 0.00 39.20 3.85
3541 4386 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3542 4387 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3543 4388 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3544 4389 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3545 4390 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3546 4391 3.381949 CTGCGTACTATAGACCCAAAGC 58.618 50.000 6.78 2.95 0.00 3.51
3547 4392 2.761767 TGCGTACTATAGACCCAAAGCA 59.238 45.455 6.78 5.40 0.00 3.91
3548 4393 3.181479 TGCGTACTATAGACCCAAAGCAG 60.181 47.826 6.78 0.00 0.00 4.24
3549 4394 3.181478 GCGTACTATAGACCCAAAGCAGT 60.181 47.826 6.78 0.00 0.00 4.40
3550 4395 4.608951 CGTACTATAGACCCAAAGCAGTC 58.391 47.826 6.78 0.00 0.00 3.51
3551 4396 3.802948 ACTATAGACCCAAAGCAGTCG 57.197 47.619 6.78 0.00 38.08 4.18
3552 4397 2.431057 ACTATAGACCCAAAGCAGTCGG 59.569 50.000 6.78 0.00 38.08 4.79
3553 4398 1.568504 ATAGACCCAAAGCAGTCGGA 58.431 50.000 0.00 0.00 38.08 4.55
3554 4399 0.606604 TAGACCCAAAGCAGTCGGAC 59.393 55.000 0.00 0.00 38.08 4.79
3555 4400 1.671379 GACCCAAAGCAGTCGGACC 60.671 63.158 4.14 0.00 0.00 4.46
3556 4401 2.359975 CCCAAAGCAGTCGGACCC 60.360 66.667 4.14 0.00 0.00 4.46
3557 4402 2.750350 CCAAAGCAGTCGGACCCT 59.250 61.111 4.14 0.00 0.00 4.34
3558 4403 1.073199 CCAAAGCAGTCGGACCCTT 59.927 57.895 4.14 5.25 0.00 3.95
3559 4404 0.955919 CCAAAGCAGTCGGACCCTTC 60.956 60.000 4.14 0.00 0.00 3.46
3560 4405 0.955919 CAAAGCAGTCGGACCCTTCC 60.956 60.000 4.14 0.00 38.77 3.46
3561 4406 2.125766 AAAGCAGTCGGACCCTTCCC 62.126 60.000 4.14 0.00 38.99 3.97
3562 4407 4.097361 GCAGTCGGACCCTTCCCC 62.097 72.222 4.14 0.00 38.99 4.81
3563 4408 3.771160 CAGTCGGACCCTTCCCCG 61.771 72.222 4.14 0.00 46.57 5.73
3569 4414 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
3573 4418 4.410400 CTTCCCCGGACCCTGCAC 62.410 72.222 0.73 0.00 0.00 4.57
3576 4421 4.722700 CCCCGGACCCTGCACAAG 62.723 72.222 0.73 0.00 0.00 3.16
3596 4441 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3597 4442 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3598 4443 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
3599 4444 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3600 4445 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3608 4453 4.335647 ACCGGGCTGCCTGTTCTG 62.336 66.667 25.08 12.73 0.00 3.02
3636 4481 6.070538 AGCATGAAAGAAGCCTCTAGTAAAGA 60.071 38.462 0.00 0.00 0.00 2.52
3735 4793 6.569179 ATTTAAATGAGTAAACCACGCTGT 57.431 33.333 0.00 0.00 0.00 4.40
3898 4956 9.146984 CATGCATGTCTTTCAATAGAAAATTGT 57.853 29.630 18.91 0.00 42.78 2.71
3943 5001 0.251787 ACCCCTCAGGAACAATTGGC 60.252 55.000 10.83 1.05 39.89 4.52
3967 5025 7.340999 GGCCCAAATTAGGAACACTATTTTAGA 59.659 37.037 0.00 0.00 34.92 2.10
4000 5058 6.578163 TTCAATCAGTCTGCATTTGATGAA 57.422 33.333 11.21 10.10 32.23 2.57
4005 5063 8.717821 CAATCAGTCTGCATTTGATGAAATTTT 58.282 29.630 8.07 0.00 32.23 1.82
4049 5107 3.567670 AATGTTTTTGCTTTCGTTGCG 57.432 38.095 0.00 0.00 0.00 4.85
4189 5247 6.627395 TGTCCAAACAAAATACTGTACTGG 57.373 37.500 4.66 0.00 35.30 4.00
4246 5304 5.162000 GCCACAAGCATCTCATAAAGTAC 57.838 43.478 0.00 0.00 42.97 2.73
4247 5305 4.635765 GCCACAAGCATCTCATAAAGTACA 59.364 41.667 0.00 0.00 42.97 2.90
4248 5306 5.297776 GCCACAAGCATCTCATAAAGTACAT 59.702 40.000 0.00 0.00 42.97 2.29
4249 5307 6.183360 GCCACAAGCATCTCATAAAGTACATT 60.183 38.462 0.00 0.00 42.97 2.71
4250 5308 7.012327 GCCACAAGCATCTCATAAAGTACATTA 59.988 37.037 0.00 0.00 42.97 1.90
4251 5309 8.892723 CCACAAGCATCTCATAAAGTACATTAA 58.107 33.333 0.00 0.00 0.00 1.40
4252 5310 9.926751 CACAAGCATCTCATAAAGTACATTAAG 57.073 33.333 0.00 0.00 0.00 1.85
4253 5311 9.672673 ACAAGCATCTCATAAAGTACATTAAGT 57.327 29.630 0.00 0.00 0.00 2.24
4255 5313 9.890629 AAGCATCTCATAAAGTACATTAAGTCA 57.109 29.630 0.00 0.00 0.00 3.41
4256 5314 9.319143 AGCATCTCATAAAGTACATTAAGTCAC 57.681 33.333 0.00 0.00 0.00 3.67
4257 5315 9.098355 GCATCTCATAAAGTACATTAAGTCACA 57.902 33.333 0.00 0.00 0.00 3.58
4260 5318 9.151471 TCTCATAAAGTACATTAAGTCACAAGC 57.849 33.333 0.00 0.00 0.00 4.01
4261 5319 8.840833 TCATAAAGTACATTAAGTCACAAGCA 57.159 30.769 0.00 0.00 0.00 3.91
4262 5320 9.448438 TCATAAAGTACATTAAGTCACAAGCAT 57.552 29.630 0.00 0.00 0.00 3.79
4263 5321 9.708222 CATAAAGTACATTAAGTCACAAGCATC 57.292 33.333 0.00 0.00 0.00 3.91
4264 5322 6.743575 AAGTACATTAAGTCACAAGCATCC 57.256 37.500 0.00 0.00 0.00 3.51
4265 5323 5.186198 AGTACATTAAGTCACAAGCATCCC 58.814 41.667 0.00 0.00 0.00 3.85
4266 5324 4.032960 ACATTAAGTCACAAGCATCCCA 57.967 40.909 0.00 0.00 0.00 4.37
4267 5325 4.603131 ACATTAAGTCACAAGCATCCCAT 58.397 39.130 0.00 0.00 0.00 4.00
4315 5373 4.831674 ATCTGGACAGATTCATGACACA 57.168 40.909 8.95 0.00 45.31 3.72
4338 5396 5.173312 CACCATACTTAGTCGATACTTTGCG 59.827 44.000 0.00 0.00 37.15 4.85
4605 5664 6.126863 AGTTCCATTCCAGTTGTCATTCTA 57.873 37.500 0.00 0.00 0.00 2.10
4626 5685 3.489355 AGTTCAGTGTTTGGCATGATGA 58.511 40.909 0.00 0.00 0.00 2.92
4722 5782 8.023021 ACATATACACATGAGGAACACATACT 57.977 34.615 0.00 0.00 37.60 2.12
4723 5783 7.928167 ACATATACACATGAGGAACACATACTG 59.072 37.037 0.00 0.00 37.60 2.74
4728 5788 6.650807 ACACATGAGGAACACATACTGTAAAG 59.349 38.462 0.00 0.00 37.60 1.85
4902 5963 7.177568 TGCCCTTTTCTAGCAATTATTACAACA 59.822 33.333 0.00 0.00 32.56 3.33
5070 6131 4.389374 ACTGTTTTGGTCATGAACGATCT 58.611 39.130 6.21 0.00 0.00 2.75
5237 6298 7.656707 AATAATTGCATTTGGATTAATCGCC 57.343 32.000 9.32 0.00 0.00 5.54
5385 6476 7.744087 TCAAAGTAGTGCAGTTTCATGTAAT 57.256 32.000 0.00 0.00 0.00 1.89
5400 6491 4.581309 ATGTAATGAGCCTGGGGATATG 57.419 45.455 0.00 0.00 0.00 1.78
5430 6521 0.693049 ACCCTGGCTGATTTCGAAGT 59.307 50.000 0.00 0.00 0.00 3.01
5468 6561 4.763793 AGAGTGTTTAGCTGATGCAAATGT 59.236 37.500 0.00 0.00 42.74 2.71
5557 6651 6.854496 TTTTAATATGGACTGCATACGGAC 57.146 37.500 0.00 0.00 0.00 4.79
5559 6653 3.667497 ATATGGACTGCATACGGACTG 57.333 47.619 0.00 0.00 0.00 3.51
5572 6666 2.767505 ACGGACTGAAATGAGTGAACC 58.232 47.619 0.00 0.00 0.00 3.62
5574 6668 2.480419 CGGACTGAAATGAGTGAACCAC 59.520 50.000 0.00 0.00 34.10 4.16
5592 6686 3.132646 ACCACCACACTAAAACGTGTCTA 59.867 43.478 0.00 0.00 45.74 2.59
5708 6805 3.011818 TGTCAATGCAATGTGCTCTAGG 58.988 45.455 0.85 0.00 45.31 3.02
5714 6811 6.377996 TCAATGCAATGTGCTCTAGGTATTTT 59.622 34.615 0.85 0.00 45.31 1.82
5800 6897 7.064728 CCTGTTTATGCTCTAGTTAAAGACCAC 59.935 40.741 0.00 0.00 0.00 4.16
5805 6902 4.710375 TGCTCTAGTTAAAGACCACCCTAG 59.290 45.833 0.00 0.00 0.00 3.02
5931 7028 3.913573 GTGTCGTGCTATGCCGCG 61.914 66.667 0.00 0.00 0.00 6.46
5964 7061 1.183549 GGTTCAAGCTCTCGTCCCTA 58.816 55.000 0.00 0.00 0.00 3.53
6026 7123 3.495331 TCTCTAGGCATAGAAGGCTCAG 58.505 50.000 9.70 0.00 44.06 3.35
6049 7146 4.278975 AGGAAAAGAGAGCGAAGATTGT 57.721 40.909 0.00 0.00 0.00 2.71
6079 7176 5.300286 CCCTTGTCCATGTGAATATCTTTCC 59.700 44.000 0.00 0.00 0.00 3.13
6094 7191 4.460948 TCTTTCCGATACCCTGTAACAC 57.539 45.455 0.00 0.00 0.00 3.32
6174 7271 2.360165 GCTCAACCTATGCCCTTGAATG 59.640 50.000 0.00 0.00 0.00 2.67
6230 7327 1.381522 TGCATGCACATACATCGCTT 58.618 45.000 18.46 0.00 0.00 4.68
6268 7365 6.019559 GCCTTCTTTTCAAACTTGTGTCAATC 60.020 38.462 0.00 0.00 0.00 2.67
6385 7482 1.811645 TTGTCGCATCAGTCGGTCCA 61.812 55.000 0.00 0.00 0.00 4.02
6488 7585 5.127194 TCTGTCGCAGTTCACCTAGATTTAT 59.873 40.000 6.72 0.00 32.61 1.40
6562 7660 6.748333 TGCTGTTTCAAATTCTCTATCCTG 57.252 37.500 0.00 0.00 0.00 3.86
6578 7676 0.732571 CCTGTCACGCACACTGTTTT 59.267 50.000 0.00 0.00 0.00 2.43
6635 7733 0.754472 GCCATGCCTGGTAAATGCAT 59.246 50.000 9.95 0.00 46.09 3.96
6636 7734 1.269936 GCCATGCCTGGTAAATGCATC 60.270 52.381 9.95 0.00 43.49 3.91
6747 7851 1.332997 CGCCTGGCATCTGATCTTTTC 59.667 52.381 20.29 0.00 0.00 2.29
6751 7855 2.611292 CTGGCATCTGATCTTTTCGGTC 59.389 50.000 0.00 0.00 32.10 4.79
6769 7873 3.431626 CGGTCCAGTTTATCCATGCTACA 60.432 47.826 0.00 0.00 0.00 2.74
6773 7877 5.986135 GTCCAGTTTATCCATGCTACAGTAG 59.014 44.000 2.85 2.85 0.00 2.57
6917 8030 4.737649 GCCTTTTCCTGTGAAACCTTTGAG 60.738 45.833 0.00 0.00 40.12 3.02
6937 8050 2.762327 AGCCTCCGTTCGGAAATAACTA 59.238 45.455 14.79 0.00 33.41 2.24
6938 8051 3.121544 GCCTCCGTTCGGAAATAACTAG 58.878 50.000 14.79 1.30 33.41 2.57
6952 8065 7.239271 GGAAATAACTAGCGTGGTTTTAGTTC 58.761 38.462 0.00 0.00 38.30 3.01
6956 8069 6.439675 AACTAGCGTGGTTTTAGTTCAAAA 57.560 33.333 0.00 0.00 33.57 2.44
6965 8078 7.008447 CGTGGTTTTAGTTCAAAATTTCGAACA 59.992 33.333 20.97 7.23 43.20 3.18
6967 8080 8.244802 TGGTTTTAGTTCAAAATTTCGAACAGA 58.755 29.630 20.97 8.26 43.20 3.41
6969 8082 9.285770 GTTTTAGTTCAAAATTTCGAACAGACT 57.714 29.630 20.97 5.76 43.20 3.24
6995 8108 5.528690 GGTAGCTCATAATTTGCTCATCACA 59.471 40.000 0.00 0.00 38.15 3.58
6997 8110 6.073327 AGCTCATAATTTGCTCATCACATG 57.927 37.500 0.00 0.00 30.41 3.21
7013 8126 9.661187 CTCATCACATGTCTAAAATTAATGCTC 57.339 33.333 0.00 0.00 0.00 4.26
7036 8149 9.360093 GCTCTATTTGTGCTATAGTATAGTTGG 57.640 37.037 16.76 0.00 32.89 3.77
7037 8150 9.862371 CTCTATTTGTGCTATAGTATAGTTGGG 57.138 37.037 16.76 0.00 0.00 4.12
7038 8151 8.311836 TCTATTTGTGCTATAGTATAGTTGGGC 58.688 37.037 16.76 5.45 0.00 5.36
7039 8152 6.494666 TTTGTGCTATAGTATAGTTGGGCT 57.505 37.500 16.76 0.00 0.00 5.19
7040 8153 5.468540 TGTGCTATAGTATAGTTGGGCTG 57.531 43.478 16.76 0.00 0.00 4.85
7041 8154 4.246458 GTGCTATAGTATAGTTGGGCTGC 58.754 47.826 16.76 3.57 0.00 5.25
7042 8155 4.021016 GTGCTATAGTATAGTTGGGCTGCT 60.021 45.833 16.76 0.00 0.00 4.24
7043 8156 4.021104 TGCTATAGTATAGTTGGGCTGCTG 60.021 45.833 16.76 0.00 0.00 4.41
7044 8157 2.910688 TAGTATAGTTGGGCTGCTGC 57.089 50.000 7.10 7.10 38.76 5.25
7056 8169 1.645455 CTGCTGCCATGTATGCGTC 59.355 57.895 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 1.228552 ATGCGAGTTTTGCCCCTGT 60.229 52.632 0.00 0.00 0.00 4.00
317 441 2.181125 TCCAAGGCATGCATTGTTCAT 58.819 42.857 34.95 5.22 36.16 2.57
318 442 1.630223 TCCAAGGCATGCATTGTTCA 58.370 45.000 34.95 20.40 36.16 3.18
319 443 2.747396 TTCCAAGGCATGCATTGTTC 57.253 45.000 34.95 12.25 36.16 3.18
320 444 2.303600 ACATTCCAAGGCATGCATTGTT 59.696 40.909 34.95 20.96 36.16 2.83
321 445 1.903860 ACATTCCAAGGCATGCATTGT 59.096 42.857 34.95 20.09 36.16 2.71
322 446 2.684001 ACATTCCAAGGCATGCATTG 57.316 45.000 32.42 32.42 37.45 2.82
323 447 4.443739 CCATAACATTCCAAGGCATGCATT 60.444 41.667 21.36 17.13 0.00 3.56
324 448 3.070446 CCATAACATTCCAAGGCATGCAT 59.930 43.478 21.36 10.32 0.00 3.96
325 449 2.431419 CCATAACATTCCAAGGCATGCA 59.569 45.455 21.36 0.00 0.00 3.96
326 450 2.694628 TCCATAACATTCCAAGGCATGC 59.305 45.455 9.90 9.90 0.00 4.06
327 451 4.831155 AGATCCATAACATTCCAAGGCATG 59.169 41.667 0.00 0.00 0.00 4.06
328 452 4.831155 CAGATCCATAACATTCCAAGGCAT 59.169 41.667 0.00 0.00 0.00 4.40
329 453 4.079844 TCAGATCCATAACATTCCAAGGCA 60.080 41.667 0.00 0.00 0.00 4.75
330 454 4.464008 TCAGATCCATAACATTCCAAGGC 58.536 43.478 0.00 0.00 0.00 4.35
331 455 6.516194 GCATTCAGATCCATAACATTCCAAGG 60.516 42.308 0.00 0.00 0.00 3.61
375 569 8.039538 TCTAGAACATGCATTCAGATCCATATC 58.960 37.037 0.00 0.00 0.00 1.63
376 570 7.914859 TCTAGAACATGCATTCAGATCCATAT 58.085 34.615 0.00 0.00 0.00 1.78
377 571 7.307131 TCTAGAACATGCATTCAGATCCATA 57.693 36.000 0.00 0.00 0.00 2.74
378 572 6.183810 TCTAGAACATGCATTCAGATCCAT 57.816 37.500 0.00 0.00 0.00 3.41
380 574 8.666573 CAATATCTAGAACATGCATTCAGATCC 58.333 37.037 0.00 0.00 32.98 3.36
383 577 7.041576 GCACAATATCTAGAACATGCATTCAGA 60.042 37.037 0.00 0.95 0.00 3.27
385 579 6.769341 AGCACAATATCTAGAACATGCATTCA 59.231 34.615 15.73 0.00 34.27 2.57
386 580 7.172875 AGAGCACAATATCTAGAACATGCATTC 59.827 37.037 15.73 0.00 34.27 2.67
387 581 6.996879 AGAGCACAATATCTAGAACATGCATT 59.003 34.615 15.73 0.00 34.27 3.56
388 582 6.531923 AGAGCACAATATCTAGAACATGCAT 58.468 36.000 15.73 0.00 34.27 3.96
389 583 5.922053 AGAGCACAATATCTAGAACATGCA 58.078 37.500 15.73 0.00 34.27 3.96
390 584 6.293298 CCAAGAGCACAATATCTAGAACATGC 60.293 42.308 0.00 3.22 0.00 4.06
391 585 6.988580 TCCAAGAGCACAATATCTAGAACATG 59.011 38.462 0.00 0.00 0.00 3.21
392 586 7.129457 TCCAAGAGCACAATATCTAGAACAT 57.871 36.000 0.00 0.00 0.00 2.71
393 587 6.544928 TCCAAGAGCACAATATCTAGAACA 57.455 37.500 0.00 0.00 0.00 3.18
428 681 9.800433 CATAAACTTGATAATTGGTATGCACAA 57.200 29.630 0.00 0.00 0.00 3.33
625 898 1.979308 TGGTTCCAATAAGTCACCCGA 59.021 47.619 0.00 0.00 0.00 5.14
628 901 5.469479 CATGTTTGGTTCCAATAAGTCACC 58.531 41.667 5.06 0.00 0.00 4.02
630 903 4.832266 AGCATGTTTGGTTCCAATAAGTCA 59.168 37.500 5.06 2.00 0.00 3.41
631 904 5.183904 AGAGCATGTTTGGTTCCAATAAGTC 59.816 40.000 5.06 0.00 32.62 3.01
632 905 5.079643 AGAGCATGTTTGGTTCCAATAAGT 58.920 37.500 5.06 0.00 32.62 2.24
633 906 5.649782 AGAGCATGTTTGGTTCCAATAAG 57.350 39.130 5.06 0.00 32.62 1.73
634 907 7.716799 ATTAGAGCATGTTTGGTTCCAATAA 57.283 32.000 5.06 0.00 32.62 1.40
636 909 6.610075 AATTAGAGCATGTTTGGTTCCAAT 57.390 33.333 5.06 0.00 32.62 3.16
637 910 6.222389 CAAATTAGAGCATGTTTGGTTCCAA 58.778 36.000 0.00 0.00 32.62 3.53
638 911 5.279406 CCAAATTAGAGCATGTTTGGTTCCA 60.279 40.000 12.76 0.00 43.40 3.53
639 912 5.047377 TCCAAATTAGAGCATGTTTGGTTCC 60.047 40.000 17.85 0.00 46.63 3.62
640 913 6.024552 TCCAAATTAGAGCATGTTTGGTTC 57.975 37.500 17.85 0.00 46.63 3.62
641 914 6.029346 CTCCAAATTAGAGCATGTTTGGTT 57.971 37.500 17.85 0.00 46.63 3.67
642 915 5.649782 CTCCAAATTAGAGCATGTTTGGT 57.350 39.130 17.85 0.00 46.63 3.67
652 925 2.032550 CACATGCCGCTCCAAATTAGAG 59.967 50.000 0.00 1.82 0.00 2.43
653 926 2.016318 CACATGCCGCTCCAAATTAGA 58.984 47.619 0.00 0.00 0.00 2.10
654 927 1.534595 GCACATGCCGCTCCAAATTAG 60.535 52.381 0.00 0.00 34.31 1.73
675 948 6.091713 ACTCCAAAATAATCGTACTTTCACCG 59.908 38.462 0.00 0.00 0.00 4.94
708 981 5.389520 TCAGGGGACAACATGAAATTTGTA 58.610 37.500 0.00 0.00 36.06 2.41
1279 1565 7.346751 TCCATATAATCAAGGGAACAAAAGC 57.653 36.000 0.00 0.00 0.00 3.51
1286 1572 6.013379 AGCGAAGATCCATATAATCAAGGGAA 60.013 38.462 0.00 0.00 0.00 3.97
1288 1574 5.583854 CAGCGAAGATCCATATAATCAAGGG 59.416 44.000 0.00 0.00 0.00 3.95
1339 1625 7.224297 TCACTAGCAAGAACTAACCAAGAAAT 58.776 34.615 0.00 0.00 0.00 2.17
1359 1645 3.421394 AATCCCTCCCTGTCATCACTA 57.579 47.619 0.00 0.00 0.00 2.74
1360 1646 2.277008 AATCCCTCCCTGTCATCACT 57.723 50.000 0.00 0.00 0.00 3.41
1365 1651 5.494706 AGGTAATTAAAATCCCTCCCTGTCA 59.505 40.000 0.00 0.00 0.00 3.58
1468 1755 2.225727 CCAACTGAACGCTTTTACCTCC 59.774 50.000 0.00 0.00 0.00 4.30
1547 1968 4.572985 TCCAAGCAATTCACAAGTTCTG 57.427 40.909 0.00 0.00 0.00 3.02
1576 1997 2.158623 TCTTTGGGAGAGCTTTGCTTCA 60.159 45.455 0.00 0.00 39.88 3.02
1649 2070 4.091800 CAGCAACAGAAAACCAACAAACAG 59.908 41.667 0.00 0.00 0.00 3.16
1804 2225 9.087424 TGTTGAAGAAATTGATGTATCTAGACG 57.913 33.333 0.00 0.00 0.00 4.18
1825 2246 2.299582 TCCGTCCGGAAATACTTGTTGA 59.700 45.455 5.23 0.00 42.05 3.18
1827 2248 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
1839 2260 3.090037 ACTCATATAATCCCTCCGTCCG 58.910 50.000 0.00 0.00 0.00 4.79
1999 2435 1.232119 CCCACGGTAAAGCGACTTTT 58.768 50.000 8.75 0.00 35.21 2.27
2000 2436 1.232621 GCCCACGGTAAAGCGACTTT 61.233 55.000 8.75 9.27 37.46 2.66
2090 2526 4.257731 TCCAACATACTAAGCGCATTTCA 58.742 39.130 11.47 0.00 0.00 2.69
2200 2894 1.128692 GCGGTCTGTATGAACTGCAAC 59.871 52.381 1.62 0.00 34.04 4.17
2201 2895 1.438651 GCGGTCTGTATGAACTGCAA 58.561 50.000 1.62 0.00 34.04 4.08
2291 2985 7.962964 TCTACTTTTAGAGAATGTGGTGTTG 57.037 36.000 0.00 0.00 30.32 3.33
2416 3110 3.593780 AGAAAGGTAGGAGCCCAAATCTT 59.406 43.478 0.00 0.00 0.00 2.40
2427 3121 5.652324 AGTGAGTCCTAAAGAAAGGTAGGA 58.348 41.667 0.00 0.00 42.94 2.94
2428 3122 6.361768 AAGTGAGTCCTAAAGAAAGGTAGG 57.638 41.667 0.00 0.00 38.64 3.18
2504 3198 6.600350 GCAAGCAAGGTACTAAAGTAAAGAC 58.400 40.000 0.00 0.00 38.49 3.01
2597 3375 1.949525 CCTGCCGGTCCAAAATATGAG 59.050 52.381 1.90 0.00 0.00 2.90
2681 3508 2.949177 TGCCATGTAGACACCAAGTT 57.051 45.000 0.00 0.00 0.00 2.66
2741 3568 9.474313 TCAATTAGGCAGTAATGGAAAAGTAAT 57.526 29.630 0.00 0.00 29.26 1.89
2783 3610 5.601662 AGTATGCACTATGTGATGTGTACC 58.398 41.667 1.52 0.00 35.23 3.34
2916 3761 1.852965 CCCCCAATTCAGGACCAGTAT 59.147 52.381 0.00 0.00 0.00 2.12
2925 3770 6.351286 CCTTCTAAATGAAACCCCCAATTCAG 60.351 42.308 0.00 0.00 38.80 3.02
2940 3785 9.838339 AGTTATGACTTATGACCCTTCTAAATG 57.162 33.333 0.00 0.00 29.87 2.32
2948 3793 8.007742 ACTCTATGAGTTATGACTTATGACCCT 58.992 37.037 5.29 0.00 40.28 4.34
2971 3816 4.162509 ACCCTAGTTATGAGCCTTTCACTC 59.837 45.833 0.00 0.00 38.99 3.51
2988 3833 4.164221 TGGCTTCTCCAGATTAAACCCTAG 59.836 45.833 0.00 0.00 40.72 3.02
3067 3912 7.465353 AGGAGTACTACAAGTTCCTTCTAAC 57.535 40.000 8.10 0.00 32.89 2.34
3083 3928 7.091902 TGTCCTCTTCCTTCTAATAGGAGTACT 60.092 40.741 0.00 0.00 44.82 2.73
3134 3979 6.363357 GTCTCATTCTGCCAAACAAAACATAC 59.637 38.462 0.00 0.00 0.00 2.39
3158 4003 2.116125 GAGGGCCACCAGCAAAGT 59.884 61.111 6.18 0.00 46.50 2.66
3214 4059 5.354513 GGCAACTTCTTACATAGAAAGGACC 59.645 44.000 0.00 0.00 42.19 4.46
3253 4098 0.609131 CAACTACCCACCCTTGCCAG 60.609 60.000 0.00 0.00 0.00 4.85
3267 4112 5.123227 GCTAGTCATGCCAATTACCAACTA 58.877 41.667 0.00 0.00 0.00 2.24
3337 4182 2.026014 CGCCATGGCCGTTTATGC 59.974 61.111 30.79 2.76 37.98 3.14
3497 4342 3.711704 CCCTACATTTCTCCAAGAGGCTA 59.288 47.826 0.00 0.00 33.74 3.93
3498 4343 2.507471 CCCTACATTTCTCCAAGAGGCT 59.493 50.000 0.00 0.00 33.74 4.58
3499 4344 2.924421 CCCTACATTTCTCCAAGAGGC 58.076 52.381 0.00 0.00 33.74 4.70
3500 4345 2.239654 TGCCCTACATTTCTCCAAGAGG 59.760 50.000 0.00 0.00 0.00 3.69
3501 4346 3.634397 TGCCCTACATTTCTCCAAGAG 57.366 47.619 0.00 0.00 0.00 2.85
3502 4347 3.308402 CCTTGCCCTACATTTCTCCAAGA 60.308 47.826 0.00 0.00 32.22 3.02
3503 4348 3.019564 CCTTGCCCTACATTTCTCCAAG 58.980 50.000 0.00 0.00 0.00 3.61
3504 4349 2.883888 GCCTTGCCCTACATTTCTCCAA 60.884 50.000 0.00 0.00 0.00 3.53
3505 4350 1.340991 GCCTTGCCCTACATTTCTCCA 60.341 52.381 0.00 0.00 0.00 3.86
3506 4351 1.064389 AGCCTTGCCCTACATTTCTCC 60.064 52.381 0.00 0.00 0.00 3.71
3507 4352 2.019984 CAGCCTTGCCCTACATTTCTC 58.980 52.381 0.00 0.00 0.00 2.87
3508 4353 1.957113 GCAGCCTTGCCCTACATTTCT 60.957 52.381 0.00 0.00 44.74 2.52
3509 4354 0.457443 GCAGCCTTGCCCTACATTTC 59.543 55.000 0.00 0.00 44.74 2.17
3510 4355 2.583472 GCAGCCTTGCCCTACATTT 58.417 52.632 0.00 0.00 44.74 2.32
3511 4356 4.344237 GCAGCCTTGCCCTACATT 57.656 55.556 0.00 0.00 44.74 2.71
3520 4365 2.288273 GGGTCTATAGTACGCAGCCTTG 60.288 54.545 0.00 0.00 0.00 3.61
3521 4366 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3522 4367 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3523 4368 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3524 4369 3.381949 CTTTGGGTCTATAGTACGCAGC 58.618 50.000 16.00 2.07 40.36 5.25
3525 4370 3.181479 TGCTTTGGGTCTATAGTACGCAG 60.181 47.826 16.00 10.49 40.36 5.18
3526 4371 2.761767 TGCTTTGGGTCTATAGTACGCA 59.238 45.455 13.98 13.98 37.94 5.24
3527 4372 3.181478 ACTGCTTTGGGTCTATAGTACGC 60.181 47.826 0.00 6.13 0.00 4.42
3528 4373 4.608951 GACTGCTTTGGGTCTATAGTACG 58.391 47.826 0.00 0.00 0.00 3.67
3529 4374 4.499357 CCGACTGCTTTGGGTCTATAGTAC 60.499 50.000 0.00 0.00 0.00 2.73
3530 4375 3.635373 CCGACTGCTTTGGGTCTATAGTA 59.365 47.826 0.00 0.00 0.00 1.82
3531 4376 2.431057 CCGACTGCTTTGGGTCTATAGT 59.569 50.000 0.00 0.00 0.00 2.12
3532 4377 2.693591 TCCGACTGCTTTGGGTCTATAG 59.306 50.000 0.00 0.00 0.00 1.31
3533 4378 2.429610 GTCCGACTGCTTTGGGTCTATA 59.570 50.000 0.00 0.00 0.00 1.31
3534 4379 1.207329 GTCCGACTGCTTTGGGTCTAT 59.793 52.381 0.00 0.00 0.00 1.98
3535 4380 0.606604 GTCCGACTGCTTTGGGTCTA 59.393 55.000 0.00 0.00 0.00 2.59
3536 4381 1.371558 GTCCGACTGCTTTGGGTCT 59.628 57.895 0.00 0.00 0.00 3.85
3537 4382 1.671379 GGTCCGACTGCTTTGGGTC 60.671 63.158 0.00 0.00 0.00 4.46
3538 4383 2.430367 GGTCCGACTGCTTTGGGT 59.570 61.111 0.00 0.00 0.00 4.51
3539 4384 2.359975 GGGTCCGACTGCTTTGGG 60.360 66.667 0.00 0.00 0.00 4.12
3540 4385 0.955919 GAAGGGTCCGACTGCTTTGG 60.956 60.000 0.00 0.00 0.00 3.28
3541 4386 0.955919 GGAAGGGTCCGACTGCTTTG 60.956 60.000 0.00 0.00 33.05 2.77
3542 4387 1.375326 GGAAGGGTCCGACTGCTTT 59.625 57.895 0.00 0.00 33.05 3.51
3543 4388 2.593956 GGGAAGGGTCCGACTGCTT 61.594 63.158 0.00 0.00 46.04 3.91
3544 4389 3.003763 GGGAAGGGTCCGACTGCT 61.004 66.667 0.00 0.00 46.04 4.24
3545 4390 4.097361 GGGGAAGGGTCCGACTGC 62.097 72.222 0.00 0.00 46.04 4.40
3552 4397 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
3556 4401 4.410400 GTGCAGGGTCCGGGGAAG 62.410 72.222 0.00 0.00 0.00 3.46
3559 4404 4.722700 CTTGTGCAGGGTCCGGGG 62.723 72.222 0.00 0.00 0.00 5.73
3564 4409 4.329545 TCCCGCTTGTGCAGGGTC 62.330 66.667 7.78 0.00 46.04 4.46
3565 4410 4.335647 CTCCCGCTTGTGCAGGGT 62.336 66.667 7.78 0.00 46.04 4.34
3567 4412 3.315142 TAGCTCCCGCTTGTGCAGG 62.315 63.158 0.00 0.00 46.47 4.85
3568 4413 2.103042 GTAGCTCCCGCTTGTGCAG 61.103 63.158 0.00 0.00 46.47 4.41
3569 4414 2.047274 GTAGCTCCCGCTTGTGCA 60.047 61.111 0.00 0.00 46.47 4.57
3570 4415 1.450312 ATGTAGCTCCCGCTTGTGC 60.450 57.895 0.00 0.00 46.47 4.57
3571 4416 1.709147 GCATGTAGCTCCCGCTTGTG 61.709 60.000 0.00 0.00 46.47 3.33
3572 4417 1.450312 GCATGTAGCTCCCGCTTGT 60.450 57.895 0.00 0.00 46.47 3.16
3573 4418 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3574 4419 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3580 4425 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3581 4426 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3582 4427 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3583 4428 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3584 4429 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3590 4435 4.335647 AGAACAGGCAGCCCGGTG 62.336 66.667 8.22 2.10 39.59 4.94
3591 4436 4.335647 CAGAACAGGCAGCCCGGT 62.336 66.667 8.22 3.78 41.56 5.28
3592 4437 2.463589 TAACAGAACAGGCAGCCCGG 62.464 60.000 8.22 3.00 35.76 5.73
3593 4438 1.003839 TAACAGAACAGGCAGCCCG 60.004 57.895 8.22 0.00 35.76 6.13
3594 4439 1.308783 GCTAACAGAACAGGCAGCCC 61.309 60.000 8.22 0.00 0.00 5.19
3595 4440 0.606401 TGCTAACAGAACAGGCAGCC 60.606 55.000 1.84 1.84 0.00 4.85
3596 4441 1.131883 CATGCTAACAGAACAGGCAGC 59.868 52.381 0.00 0.00 36.35 5.25
3597 4442 2.703416 TCATGCTAACAGAACAGGCAG 58.297 47.619 0.00 0.00 36.35 4.85
3598 4443 2.857186 TCATGCTAACAGAACAGGCA 57.143 45.000 0.00 0.00 37.32 4.75
3599 4444 3.753272 TCTTTCATGCTAACAGAACAGGC 59.247 43.478 0.00 0.00 0.00 4.85
3600 4445 5.618640 GCTTCTTTCATGCTAACAGAACAGG 60.619 44.000 0.00 0.00 0.00 4.00
3608 4453 5.423886 ACTAGAGGCTTCTTTCATGCTAAC 58.576 41.667 2.68 0.00 34.79 2.34
3687 4728 7.823745 AGACCATGTCAAAACTTAGTGAAAT 57.176 32.000 0.00 0.00 34.60 2.17
3811 4869 3.390311 TCTGAGTCGCTACCCTCTATGTA 59.610 47.826 0.00 0.00 0.00 2.29
3967 5025 7.275888 TGCAGACTGATTGAAATTACTTGTT 57.724 32.000 6.65 0.00 0.00 2.83
4022 5080 7.944649 GCAACGAAAGCAAAAACATTTATACTC 59.055 33.333 0.00 0.00 0.00 2.59
4036 5094 2.206750 AGTTACTCGCAACGAAAGCAA 58.793 42.857 0.00 0.00 34.74 3.91
4049 5107 9.624697 TTCATAAAATGTGCATTGAAGTTACTC 57.375 29.630 0.00 0.00 0.00 2.59
4189 5247 6.389091 TGTCAATCCAATTTTACATGCAGAC 58.611 36.000 0.00 0.00 0.00 3.51
4236 5294 8.840833 TGCTTGTGACTTAATGTACTTTATGA 57.159 30.769 16.57 0.00 0.00 2.15
4240 5298 6.151144 GGGATGCTTGTGACTTAATGTACTTT 59.849 38.462 0.00 0.00 0.00 2.66
4241 5299 5.648092 GGGATGCTTGTGACTTAATGTACTT 59.352 40.000 0.00 0.00 0.00 2.24
4242 5300 5.186198 GGGATGCTTGTGACTTAATGTACT 58.814 41.667 0.00 0.00 0.00 2.73
4243 5301 4.941263 TGGGATGCTTGTGACTTAATGTAC 59.059 41.667 0.00 0.00 0.00 2.90
4244 5302 5.172687 TGGGATGCTTGTGACTTAATGTA 57.827 39.130 0.00 0.00 0.00 2.29
4245 5303 4.032960 TGGGATGCTTGTGACTTAATGT 57.967 40.909 0.00 0.00 0.00 2.71
4246 5304 6.698008 TTATGGGATGCTTGTGACTTAATG 57.302 37.500 0.00 0.00 0.00 1.90
4247 5305 6.891908 ACTTTATGGGATGCTTGTGACTTAAT 59.108 34.615 0.00 0.00 0.00 1.40
4248 5306 6.245408 ACTTTATGGGATGCTTGTGACTTAA 58.755 36.000 0.00 0.00 0.00 1.85
4249 5307 5.815581 ACTTTATGGGATGCTTGTGACTTA 58.184 37.500 0.00 0.00 0.00 2.24
4250 5308 4.666512 ACTTTATGGGATGCTTGTGACTT 58.333 39.130 0.00 0.00 0.00 3.01
4251 5309 4.307032 ACTTTATGGGATGCTTGTGACT 57.693 40.909 0.00 0.00 0.00 3.41
4252 5310 4.941263 TGTACTTTATGGGATGCTTGTGAC 59.059 41.667 0.00 0.00 0.00 3.67
4253 5311 5.172687 TGTACTTTATGGGATGCTTGTGA 57.827 39.130 0.00 0.00 0.00 3.58
4254 5312 5.589855 TGATGTACTTTATGGGATGCTTGTG 59.410 40.000 0.00 0.00 0.00 3.33
4255 5313 5.754782 TGATGTACTTTATGGGATGCTTGT 58.245 37.500 0.00 0.00 0.00 3.16
4256 5314 6.319658 ACTTGATGTACTTTATGGGATGCTTG 59.680 38.462 0.00 0.00 0.00 4.01
4257 5315 6.426587 ACTTGATGTACTTTATGGGATGCTT 58.573 36.000 0.00 0.00 0.00 3.91
4258 5316 6.006275 ACTTGATGTACTTTATGGGATGCT 57.994 37.500 0.00 0.00 0.00 3.79
4259 5317 6.699575 AACTTGATGTACTTTATGGGATGC 57.300 37.500 0.00 0.00 0.00 3.91
4260 5318 8.279970 TCAAACTTGATGTACTTTATGGGATG 57.720 34.615 0.00 0.00 31.01 3.51
4261 5319 8.877864 TTCAAACTTGATGTACTTTATGGGAT 57.122 30.769 0.00 0.00 37.00 3.85
4262 5320 7.942341 ACTTCAAACTTGATGTACTTTATGGGA 59.058 33.333 8.72 0.00 41.84 4.37
4263 5321 8.110860 ACTTCAAACTTGATGTACTTTATGGG 57.889 34.615 8.72 0.00 41.84 4.00
4264 5322 9.612620 GAACTTCAAACTTGATGTACTTTATGG 57.387 33.333 10.39 0.00 42.52 2.74
4315 5373 5.279384 CGCAAAGTATCGACTAAGTATGGT 58.721 41.667 0.00 0.00 33.58 3.55
4338 5396 3.260884 TCACTCCAGAAATAGGTGACACC 59.739 47.826 17.43 17.43 38.99 4.16
4544 5603 1.452110 CGGTGCACCAAATGAGATGA 58.548 50.000 34.16 0.00 35.14 2.92
4605 5664 3.489355 TCATCATGCCAAACACTGAACT 58.511 40.909 0.00 0.00 0.00 3.01
4626 5685 1.600485 CGCTCCAGTACCAAAACGTTT 59.400 47.619 7.96 7.96 0.00 3.60
4692 5751 9.679661 TGTGTTCCTCATGTGTATATGTAAAAT 57.320 29.630 0.00 0.00 0.00 1.82
4698 5757 8.302965 CAGTATGTGTTCCTCATGTGTATATG 57.697 38.462 0.00 0.00 0.00 1.78
4752 5812 2.695147 CCAGCCAACCATTTATCCCTTC 59.305 50.000 0.00 0.00 0.00 3.46
4902 5963 3.946824 ACTATCACCTGGGAGATTCCAT 58.053 45.455 8.84 0.00 38.64 3.41
4982 6043 1.601419 GCTGGCTGTACTGGTACCGA 61.601 60.000 7.57 0.00 35.26 4.69
5050 6111 3.501828 CCAGATCGTTCATGACCAAAACA 59.498 43.478 0.00 0.00 0.00 2.83
5070 6131 1.377202 GTCCCAGCTGAAATCGCCA 60.377 57.895 17.39 0.00 0.00 5.69
5118 6179 2.021262 TTGAATGCAAACCCCATGGA 57.979 45.000 15.22 0.00 34.81 3.41
5124 6185 7.614124 ACATGATTAATTTGAATGCAAACCC 57.386 32.000 0.00 0.00 45.94 4.11
5211 6272 9.369904 GGCGATTAATCCAAATGCAATTATTAT 57.630 29.630 9.87 0.00 33.67 1.28
5385 6476 1.151760 ATTGCATATCCCCAGGCTCA 58.848 50.000 0.00 0.00 0.00 4.26
5400 6491 0.250424 AGCCAGGGTTTGCAAATTGC 60.250 50.000 16.21 11.58 45.29 3.56
5430 6521 3.236632 CACTCTGCATGCTAGTGTGTA 57.763 47.619 30.06 7.55 36.66 2.90
5537 6631 4.830600 TCAGTCCGTATGCAGTCCATATTA 59.169 41.667 0.00 0.00 38.60 0.98
5548 6642 3.521560 TCACTCATTTCAGTCCGTATGC 58.478 45.455 0.00 0.00 0.00 3.14
5553 6647 2.480419 GTGGTTCACTCATTTCAGTCCG 59.520 50.000 0.00 0.00 0.00 4.79
5557 6651 3.003689 GTGTGGTGGTTCACTCATTTCAG 59.996 47.826 0.00 0.00 38.40 3.02
5559 6653 3.214328 AGTGTGGTGGTTCACTCATTTC 58.786 45.455 0.00 0.00 40.28 2.17
5617 6712 7.485913 TCCGTTCACAAATATAAGACGTTCTAC 59.514 37.037 0.00 0.00 0.00 2.59
5624 6719 5.667466 TCCCTCCGTTCACAAATATAAGAC 58.333 41.667 0.00 0.00 0.00 3.01
5626 6721 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
5714 6811 8.699130 TGAGATCAGCTTATATTTCAGAACTGA 58.301 33.333 0.00 0.00 37.33 3.41
5757 6854 9.435688 CATAAACAGGATAACCATAATGATCGA 57.564 33.333 0.00 0.00 38.94 3.59
5931 7028 4.237724 GCTTGAACCATTTCAGGTAAAGC 58.762 43.478 13.99 13.99 45.84 3.51
6026 7123 4.693095 ACAATCTTCGCTCTCTTTTCCTTC 59.307 41.667 0.00 0.00 0.00 3.46
6049 7146 1.039068 CACATGGACAAGGGCAACAA 58.961 50.000 0.00 0.00 39.74 2.83
6079 7176 5.957798 TCACTAAAGTGTTACAGGGTATCG 58.042 41.667 9.81 0.00 45.76 2.92
6094 7191 5.297547 TGTAGTTGAGCCACTTCACTAAAG 58.702 41.667 0.00 0.00 41.08 1.85
6129 7226 4.384208 CGGAGAATTGAGTAAACCCAGGAT 60.384 45.833 0.00 0.00 0.00 3.24
6174 7271 8.837389 GGGAAAACAGGTAATAGATACAACATC 58.163 37.037 0.00 0.00 36.14 3.06
6268 7365 0.802494 AAAGACGGCATTACCTTGCG 59.198 50.000 0.00 0.00 43.71 4.85
6273 7370 4.933400 TGAGTTTCTAAAGACGGCATTACC 59.067 41.667 0.00 0.00 0.00 2.85
6488 7585 9.672086 CGACAATAGAAACACAGGAAAAATAAA 57.328 29.630 0.00 0.00 0.00 1.40
6543 7641 6.673316 GCGTGACAGGATAGAGAATTTGAAAC 60.673 42.308 0.00 0.00 0.00 2.78
6562 7660 3.668596 ACTTAAAACAGTGTGCGTGAC 57.331 42.857 0.00 0.00 0.00 3.67
6578 7676 0.464036 CGGCAGGCAGGACATACTTA 59.536 55.000 0.00 0.00 0.00 2.24
6635 7733 4.883021 AGGACTAGTTATCCTGGTGAGA 57.117 45.455 0.00 0.00 45.29 3.27
6636 7734 5.074115 CCTAGGACTAGTTATCCTGGTGAG 58.926 50.000 1.05 1.90 46.48 3.51
6747 7851 2.332063 AGCATGGATAAACTGGACCG 57.668 50.000 0.00 0.00 0.00 4.79
6751 7855 6.040955 TCTCTACTGTAGCATGGATAAACTGG 59.959 42.308 9.98 0.00 0.00 4.00
6769 7873 7.097834 GGTTACATTGTTACTGCTTCTCTACT 58.902 38.462 5.97 0.00 0.00 2.57
6773 7877 4.092968 CGGGTTACATTGTTACTGCTTCTC 59.907 45.833 5.97 0.00 0.00 2.87
6896 8009 4.363138 GCTCAAAGGTTTCACAGGAAAAG 58.637 43.478 0.00 0.00 44.18 2.27
6901 8014 1.882623 GAGGCTCAAAGGTTTCACAGG 59.117 52.381 10.25 0.00 0.00 4.00
6917 8030 2.019948 AGTTATTTCCGAACGGAGGC 57.980 50.000 15.34 6.34 46.06 4.70
6937 8050 5.457473 CGAAATTTTGAACTAAAACCACGCT 59.543 36.000 0.00 0.00 40.80 5.07
6938 8051 5.456173 TCGAAATTTTGAACTAAAACCACGC 59.544 36.000 5.60 0.00 40.80 5.34
6952 8065 4.568152 ACCCAGTCTGTTCGAAATTTTG 57.432 40.909 0.00 0.00 0.00 2.44
6956 8069 2.567615 AGCTACCCAGTCTGTTCGAAAT 59.432 45.455 0.00 0.00 0.00 2.17
6965 8078 4.164988 AGCAAATTATGAGCTACCCAGTCT 59.835 41.667 0.00 0.00 36.73 3.24
6967 8080 4.080356 TGAGCAAATTATGAGCTACCCAGT 60.080 41.667 0.00 0.00 39.02 4.00
6969 8082 4.502105 TGAGCAAATTATGAGCTACCCA 57.498 40.909 0.00 0.00 39.02 4.51
7009 8122 9.914131 CAACTATACTATAGCACAAATAGAGCA 57.086 33.333 0.00 0.00 36.17 4.26
7013 8126 8.314751 AGCCCAACTATACTATAGCACAAATAG 58.685 37.037 0.00 3.07 33.87 1.73
7021 8134 4.499183 CAGCAGCCCAACTATACTATAGC 58.501 47.826 0.00 0.00 0.00 2.97
7024 8137 3.409026 GCAGCAGCCCAACTATACTAT 57.591 47.619 0.00 0.00 33.58 2.12
7026 8139 3.788672 GCAGCAGCCCAACTATACT 57.211 52.632 0.00 0.00 33.58 2.12
7037 8150 2.330393 CGCATACATGGCAGCAGC 59.670 61.111 0.00 0.00 41.10 5.25
7038 8151 1.091197 TGACGCATACATGGCAGCAG 61.091 55.000 0.00 0.00 0.00 4.24
7039 8152 0.464193 ATGACGCATACATGGCAGCA 60.464 50.000 0.00 0.00 0.00 4.41
7040 8153 0.236711 GATGACGCATACATGGCAGC 59.763 55.000 0.00 0.00 0.00 5.25
7041 8154 1.529865 CAGATGACGCATACATGGCAG 59.470 52.381 0.00 0.00 0.00 4.85
7042 8155 1.585297 CAGATGACGCATACATGGCA 58.415 50.000 0.00 0.00 0.00 4.92
7043 8156 0.236711 GCAGATGACGCATACATGGC 59.763 55.000 0.00 0.00 0.00 4.40
7044 8157 1.585297 TGCAGATGACGCATACATGG 58.415 50.000 0.00 0.00 33.55 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.