Multiple sequence alignment - TraesCS4A01G077400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G077400 chr4A 100.000 7781 0 0 1 7781 76617686 76625466 0.000000e+00 14369.0
1 TraesCS4A01G077400 chr4A 79.927 274 35 13 5497 5764 373292613 373292354 4.800000e-42 183.0
2 TraesCS4A01G077400 chr4A 77.826 230 41 7 5013 5239 496339235 496339013 4.900000e-27 134.0
3 TraesCS4A01G077400 chr4A 100.000 28 0 0 1077 1104 608866527 608866554 1.400000e-02 52.8
4 TraesCS4A01G077400 chr4D 94.358 6859 274 59 279 7075 394958270 394965077 0.000000e+00 10418.0
5 TraesCS4A01G077400 chr4D 88.191 398 20 2 7411 7781 394965403 394965800 4.280000e-122 449.0
6 TraesCS4A01G077400 chr4D 94.502 291 14 1 7081 7371 394965122 394965410 1.540000e-121 448.0
7 TraesCS4A01G077400 chr4B 94.676 5560 215 26 1857 7371 486091689 486097212 0.000000e+00 8552.0
8 TraesCS4A01G077400 chr4B 85.097 1644 112 56 283 1855 486081703 486083284 0.000000e+00 1555.0
9 TraesCS4A01G077400 chr4B 88.191 398 20 2 7411 7781 486097205 486097602 4.280000e-122 449.0
10 TraesCS4A01G077400 chr4B 94.468 235 12 1 1 234 34331278 34331512 2.060000e-95 361.0
11 TraesCS4A01G077400 chr4B 94.468 235 12 1 1 234 635041957 635042191 2.060000e-95 361.0
12 TraesCS4A01G077400 chr7B 78.219 3604 630 91 2920 6453 731018486 731014968 0.000000e+00 2163.0
13 TraesCS4A01G077400 chr7D 78.072 3621 603 113 2917 6453 629187316 629190829 0.000000e+00 2111.0
14 TraesCS4A01G077400 chr7D 74.247 299 48 17 6179 6453 636332209 636331916 1.790000e-16 99.0
15 TraesCS4A01G077400 chr7D 73.913 299 49 17 6179 6453 635675574 635675867 8.310000e-15 93.5
16 TraesCS4A01G077400 chr2D 78.261 782 128 23 5004 5764 636855286 636856046 1.530000e-126 464.0
17 TraesCS4A01G077400 chr1B 78.217 785 120 29 5004 5764 598366981 598367738 9.200000e-124 455.0
18 TraesCS4A01G077400 chr1B 94.468 235 12 1 1 234 552350863 552351097 2.060000e-95 361.0
19 TraesCS4A01G077400 chr1B 94.468 235 12 1 1 234 552360056 552360290 2.060000e-95 361.0
20 TraesCS4A01G077400 chr1B 94.468 235 12 1 1 234 631391606 631391372 2.060000e-95 361.0
21 TraesCS4A01G077400 chr2A 78.788 726 112 25 5004 5707 773210312 773211017 4.280000e-122 449.0
22 TraesCS4A01G077400 chr2B 77.562 771 130 27 5013 5764 459413511 459412765 7.220000e-115 425.0
23 TraesCS4A01G077400 chr5D 78.616 636 100 20 5147 5764 333375645 333376262 9.470000e-104 388.0
24 TraesCS4A01G077400 chr6A 94.142 239 13 1 1 238 472903818 472903580 5.740000e-96 363.0
25 TraesCS4A01G077400 chr6A 92.742 248 15 3 1 245 42770056 42769809 9.600000e-94 355.0
26 TraesCS4A01G077400 chr6A 77.922 231 45 3 5010 5239 199077400 199077625 1.050000e-28 139.0
27 TraesCS4A01G077400 chr6A 77.632 228 45 3 5013 5239 310232093 310231871 4.900000e-27 134.0
28 TraesCS4A01G077400 chr6A 100.000 29 0 0 1075 1103 596479738 596479766 4.000000e-03 54.7
29 TraesCS4A01G077400 chr5B 94.468 235 12 1 1 234 6314620 6314854 2.060000e-95 361.0
30 TraesCS4A01G077400 chr5B 100.000 29 0 0 1076 1104 406876388 406876360 4.000000e-03 54.7
31 TraesCS4A01G077400 chr1A 94.468 235 12 1 1 234 142429719 142429953 2.060000e-95 361.0
32 TraesCS4A01G077400 chr7A 82.254 355 55 5 2920 3271 725124301 725123952 4.560000e-77 300.0
33 TraesCS4A01G077400 chr7A 78.261 230 40 7 5013 5239 711675494 711675272 1.050000e-28 139.0
34 TraesCS4A01G077400 chr7A 77.293 229 44 5 5013 5239 37073974 37073752 2.280000e-25 128.0
35 TraesCS4A01G077400 chr1D 79.927 274 35 13 5497 5764 486205272 486205013 4.800000e-42 183.0
36 TraesCS4A01G077400 chr1D 79.235 183 32 3 5013 5194 449834528 449834351 1.060000e-23 122.0
37 TraesCS4A01G077400 chr3B 94.872 39 1 1 2663 2701 117725298 117725335 8.430000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G077400 chr4A 76617686 76625466 7780 False 14369.000000 14369 100.000000 1 7781 1 chr4A.!!$F1 7780
1 TraesCS4A01G077400 chr4D 394958270 394965800 7530 False 3771.666667 10418 92.350333 279 7781 3 chr4D.!!$F1 7502
2 TraesCS4A01G077400 chr4B 486091689 486097602 5913 False 4500.500000 8552 91.433500 1857 7781 2 chr4B.!!$F4 5924
3 TraesCS4A01G077400 chr4B 486081703 486083284 1581 False 1555.000000 1555 85.097000 283 1855 1 chr4B.!!$F2 1572
4 TraesCS4A01G077400 chr7B 731014968 731018486 3518 True 2163.000000 2163 78.219000 2920 6453 1 chr7B.!!$R1 3533
5 TraesCS4A01G077400 chr7D 629187316 629190829 3513 False 2111.000000 2111 78.072000 2917 6453 1 chr7D.!!$F1 3536
6 TraesCS4A01G077400 chr2D 636855286 636856046 760 False 464.000000 464 78.261000 5004 5764 1 chr2D.!!$F1 760
7 TraesCS4A01G077400 chr1B 598366981 598367738 757 False 455.000000 455 78.217000 5004 5764 1 chr1B.!!$F3 760
8 TraesCS4A01G077400 chr2A 773210312 773211017 705 False 449.000000 449 78.788000 5004 5707 1 chr2A.!!$F1 703
9 TraesCS4A01G077400 chr2B 459412765 459413511 746 True 425.000000 425 77.562000 5013 5764 1 chr2B.!!$R1 751
10 TraesCS4A01G077400 chr5D 333375645 333376262 617 False 388.000000 388 78.616000 5147 5764 1 chr5D.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.034059 CGACCTAAGGCAGCCCATAG 59.966 60.000 8.22 11.25 33.24 2.23 F
190 191 0.037046 ACGTGAGCTGTGATGCATCA 60.037 50.000 25.42 25.42 34.99 3.07 F
256 257 0.108992 TGTGACGATAAGTGGGACGC 60.109 55.000 0.00 0.00 40.45 5.19 F
278 279 0.110464 GCAGACAGCGTCTCTTTTGC 60.110 55.000 8.02 6.28 41.37 3.68 F
1773 1914 0.392998 GAGGAGGAAATTGGCGCTCA 60.393 55.000 7.64 0.00 0.00 4.26 F
2371 2516 3.136443 TGAATTCACTCTGTGGTCCTGTT 59.864 43.478 3.38 0.00 33.87 3.16 F
3376 3554 1.871676 CTTGGATGGCGTGATCATGAG 59.128 52.381 19.30 5.33 0.00 2.90 F
4013 4209 0.801251 GCACTGGAATGCACTCTGTC 59.199 55.000 0.00 0.00 45.39 3.51 F
4921 5137 0.539518 GTGGGGAGCTCTTCCTTCTC 59.460 60.000 14.64 0.00 45.98 2.87 F
4940 5156 2.808543 CTCGGGTTTGTCTCTTTTCTGG 59.191 50.000 0.00 0.00 0.00 3.86 F
6258 6509 1.142870 AGCCTCACAACCAAGTAAGCA 59.857 47.619 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1582 0.394216 TGGCCTTGTCATCCGGAATG 60.394 55.000 9.01 7.95 36.65 2.67 R
1569 1702 1.135527 CGGCATTTCCAGTGCATGAAT 59.864 47.619 0.00 0.00 44.25 2.57 R
1773 1914 2.495155 TGCAGATGTGTAGTGGCATT 57.505 45.000 0.00 0.00 0.00 3.56 R
1960 2101 2.794350 TCATACGCTGCAATCATGTACG 59.206 45.455 0.00 0.00 0.00 3.67 R
2684 2833 3.009143 ACATACTCCCTCTGTCCCAAAAC 59.991 47.826 0.00 0.00 0.00 2.43 R
4013 4209 3.577649 ACTGTGGACGACATACTTCTG 57.422 47.619 0.00 0.00 32.74 3.02 R
4921 5137 1.880027 CCCAGAAAAGAGACAAACCCG 59.120 52.381 0.00 0.00 0.00 5.28 R
4986 5202 2.369394 GGAGAACCTACATTGCCAAGG 58.631 52.381 0.00 0.00 36.42 3.61 R
6221 6472 1.734477 CTCGGCTCTGGTGACAACG 60.734 63.158 0.00 0.00 42.06 4.10 R
6530 6783 2.364002 GGTCCAGAGATTCAGAGCTACC 59.636 54.545 0.00 0.00 0.00 3.18 R
7634 7977 0.543749 ATCTGCACCTTCCTGTAGGC 59.456 55.000 0.00 0.00 38.99 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.401577 CGTGTCTAAGAGCTGCGAA 57.598 52.632 0.00 0.00 0.00 4.70
19 20 1.914634 CGTGTCTAAGAGCTGCGAAT 58.085 50.000 0.00 0.00 0.00 3.34
20 21 1.849219 CGTGTCTAAGAGCTGCGAATC 59.151 52.381 0.00 0.00 0.00 2.52
21 22 2.478709 CGTGTCTAAGAGCTGCGAATCT 60.479 50.000 0.00 0.00 0.00 2.40
22 23 3.516615 GTGTCTAAGAGCTGCGAATCTT 58.483 45.455 0.00 7.62 39.13 2.40
23 24 3.305629 GTGTCTAAGAGCTGCGAATCTTG 59.694 47.826 11.55 4.07 36.47 3.02
24 25 3.193479 TGTCTAAGAGCTGCGAATCTTGA 59.807 43.478 11.55 5.85 36.47 3.02
25 26 3.796178 GTCTAAGAGCTGCGAATCTTGAG 59.204 47.826 11.55 6.59 36.47 3.02
26 27 2.021355 AAGAGCTGCGAATCTTGAGG 57.979 50.000 0.00 0.00 34.52 3.86
27 28 0.461693 AGAGCTGCGAATCTTGAGGC 60.462 55.000 0.00 0.00 0.00 4.70
28 29 0.461693 GAGCTGCGAATCTTGAGGCT 60.462 55.000 0.00 0.00 0.00 4.58
29 30 0.461693 AGCTGCGAATCTTGAGGCTC 60.462 55.000 7.79 7.79 0.00 4.70
30 31 0.461693 GCTGCGAATCTTGAGGCTCT 60.462 55.000 16.72 0.00 0.00 4.09
31 32 1.202463 GCTGCGAATCTTGAGGCTCTA 60.202 52.381 16.72 7.33 0.00 2.43
32 33 2.741612 CTGCGAATCTTGAGGCTCTAG 58.258 52.381 18.24 18.24 0.00 2.43
33 34 1.410517 TGCGAATCTTGAGGCTCTAGG 59.589 52.381 22.68 10.07 0.00 3.02
34 35 1.270041 GCGAATCTTGAGGCTCTAGGG 60.270 57.143 22.68 12.42 0.00 3.53
35 36 1.270041 CGAATCTTGAGGCTCTAGGGC 60.270 57.143 22.68 5.86 41.20 5.19
36 37 0.755686 AATCTTGAGGCTCTAGGGCG 59.244 55.000 22.68 1.80 45.89 6.13
37 38 0.105964 ATCTTGAGGCTCTAGGGCGA 60.106 55.000 22.68 7.04 45.89 5.54
38 39 0.753479 TCTTGAGGCTCTAGGGCGAG 60.753 60.000 22.68 4.12 45.89 5.03
43 44 2.731374 GCTCTAGGGCGAGCGAAT 59.269 61.111 0.00 0.00 45.91 3.34
44 45 1.372375 GCTCTAGGGCGAGCGAATC 60.372 63.158 0.00 0.00 45.91 2.52
54 55 2.888218 GAGCGAATCGACCTAAGGC 58.112 57.895 6.91 0.00 0.00 4.35
55 56 0.102481 GAGCGAATCGACCTAAGGCA 59.898 55.000 6.91 0.00 0.00 4.75
56 57 0.103208 AGCGAATCGACCTAAGGCAG 59.897 55.000 6.91 0.00 0.00 4.85
57 58 1.491505 GCGAATCGACCTAAGGCAGC 61.492 60.000 6.91 0.00 0.00 5.25
58 59 0.876342 CGAATCGACCTAAGGCAGCC 60.876 60.000 1.84 1.84 0.00 4.85
59 60 0.533085 GAATCGACCTAAGGCAGCCC 60.533 60.000 8.22 0.00 0.00 5.19
60 61 1.271840 AATCGACCTAAGGCAGCCCA 61.272 55.000 8.22 0.00 0.00 5.36
61 62 1.056700 ATCGACCTAAGGCAGCCCAT 61.057 55.000 8.22 0.00 0.00 4.00
62 63 0.397957 TCGACCTAAGGCAGCCCATA 60.398 55.000 8.22 0.52 0.00 2.74
63 64 0.034059 CGACCTAAGGCAGCCCATAG 59.966 60.000 8.22 11.25 33.24 2.23
64 65 0.250510 GACCTAAGGCAGCCCATAGC 60.251 60.000 8.22 0.00 44.25 2.97
109 110 4.074647 CGGAGGTGTGGGGTTTTC 57.925 61.111 0.00 0.00 0.00 2.29
110 111 1.964373 CGGAGGTGTGGGGTTTTCG 60.964 63.158 0.00 0.00 0.00 3.46
111 112 1.602605 GGAGGTGTGGGGTTTTCGG 60.603 63.158 0.00 0.00 0.00 4.30
112 113 1.602605 GAGGTGTGGGGTTTTCGGG 60.603 63.158 0.00 0.00 0.00 5.14
113 114 2.196502 GGTGTGGGGTTTTCGGGT 59.803 61.111 0.00 0.00 0.00 5.28
114 115 1.900016 GGTGTGGGGTTTTCGGGTC 60.900 63.158 0.00 0.00 0.00 4.46
115 116 1.149854 GTGTGGGGTTTTCGGGTCT 59.850 57.895 0.00 0.00 0.00 3.85
116 117 1.149627 TGTGGGGTTTTCGGGTCTG 59.850 57.895 0.00 0.00 0.00 3.51
117 118 2.114411 TGGGGTTTTCGGGTCTGC 59.886 61.111 0.00 0.00 0.00 4.26
118 119 2.114411 GGGGTTTTCGGGTCTGCA 59.886 61.111 0.00 0.00 0.00 4.41
119 120 1.529713 GGGGTTTTCGGGTCTGCAA 60.530 57.895 0.00 0.00 0.00 4.08
120 121 1.110518 GGGGTTTTCGGGTCTGCAAA 61.111 55.000 0.00 0.00 0.00 3.68
121 122 0.747852 GGGTTTTCGGGTCTGCAAAA 59.252 50.000 0.00 0.00 0.00 2.44
122 123 1.269569 GGGTTTTCGGGTCTGCAAAAG 60.270 52.381 0.00 0.00 0.00 2.27
123 124 1.487482 GTTTTCGGGTCTGCAAAAGC 58.513 50.000 0.00 0.00 0.00 3.51
124 125 1.107114 TTTTCGGGTCTGCAAAAGCA 58.893 45.000 0.00 0.00 0.00 3.91
125 126 0.383949 TTTCGGGTCTGCAAAAGCAC 59.616 50.000 0.00 0.00 0.00 4.40
126 127 1.452145 TTCGGGTCTGCAAAAGCACC 61.452 55.000 0.00 0.00 0.00 5.01
127 128 2.919494 CGGGTCTGCAAAAGCACCC 61.919 63.158 6.17 6.17 40.33 4.61
128 129 2.644992 GGTCTGCAAAAGCACCCG 59.355 61.111 0.00 0.00 0.00 5.28
129 130 2.193536 GGTCTGCAAAAGCACCCGT 61.194 57.895 0.00 0.00 0.00 5.28
130 131 1.282875 GTCTGCAAAAGCACCCGTC 59.717 57.895 0.00 0.00 0.00 4.79
131 132 2.250939 TCTGCAAAAGCACCCGTCG 61.251 57.895 0.00 0.00 0.00 5.12
132 133 2.203084 TGCAAAAGCACCCGTCGA 60.203 55.556 0.00 0.00 0.00 4.20
133 134 2.251371 GCAAAAGCACCCGTCGAC 59.749 61.111 5.18 5.18 0.00 4.20
134 135 2.251642 GCAAAAGCACCCGTCGACT 61.252 57.895 14.70 0.00 0.00 4.18
135 136 1.569493 CAAAAGCACCCGTCGACTG 59.431 57.895 14.70 7.04 0.00 3.51
136 137 1.145377 AAAAGCACCCGTCGACTGT 59.855 52.632 14.70 7.89 0.00 3.55
137 138 0.878961 AAAAGCACCCGTCGACTGTC 60.879 55.000 14.70 0.00 0.00 3.51
138 139 1.745320 AAAGCACCCGTCGACTGTCT 61.745 55.000 14.70 7.42 0.00 3.41
139 140 1.745320 AAGCACCCGTCGACTGTCTT 61.745 55.000 14.70 12.12 0.00 3.01
140 141 2.022129 GCACCCGTCGACTGTCTTG 61.022 63.158 14.70 5.20 0.00 3.02
141 142 2.022129 CACCCGTCGACTGTCTTGC 61.022 63.158 14.70 0.00 0.00 4.01
142 143 2.805353 CCCGTCGACTGTCTTGCG 60.805 66.667 14.70 7.28 0.00 4.85
143 144 2.050351 CCGTCGACTGTCTTGCGT 60.050 61.111 14.70 0.00 0.00 5.24
144 145 1.208358 CCGTCGACTGTCTTGCGTA 59.792 57.895 14.70 0.00 0.00 4.42
145 146 0.179171 CCGTCGACTGTCTTGCGTAT 60.179 55.000 14.70 0.00 0.00 3.06
146 147 1.181001 CGTCGACTGTCTTGCGTATC 58.819 55.000 14.70 0.00 0.00 2.24
147 148 1.181001 GTCGACTGTCTTGCGTATCG 58.819 55.000 8.70 0.00 0.00 2.92
158 159 3.017314 CGTATCGCGCTGTCGGTC 61.017 66.667 5.56 0.00 35.95 4.79
159 160 3.017314 GTATCGCGCTGTCGGTCG 61.017 66.667 5.56 0.00 35.95 4.79
160 161 4.246206 TATCGCGCTGTCGGTCGG 62.246 66.667 5.56 0.00 35.95 4.79
165 166 4.477975 CGCTGTCGGTCGGGTCTC 62.478 72.222 0.00 0.00 0.00 3.36
166 167 4.131088 GCTGTCGGTCGGGTCTCC 62.131 72.222 0.00 0.00 0.00 3.71
167 168 2.361357 CTGTCGGTCGGGTCTCCT 60.361 66.667 0.00 0.00 0.00 3.69
168 169 1.977544 CTGTCGGTCGGGTCTCCTT 60.978 63.158 0.00 0.00 0.00 3.36
169 170 1.935327 CTGTCGGTCGGGTCTCCTTC 61.935 65.000 0.00 0.00 0.00 3.46
170 171 2.749044 TCGGTCGGGTCTCCTTCG 60.749 66.667 0.00 0.00 0.00 3.79
171 172 2.749044 CGGTCGGGTCTCCTTCGA 60.749 66.667 0.00 0.00 0.00 3.71
173 174 2.484203 GTCGGGTCTCCTTCGACG 59.516 66.667 0.00 0.00 42.60 5.12
174 175 2.033141 TCGGGTCTCCTTCGACGT 59.967 61.111 0.00 0.00 34.75 4.34
175 176 2.178521 CGGGTCTCCTTCGACGTG 59.821 66.667 0.00 0.00 34.75 4.49
176 177 2.330372 CGGGTCTCCTTCGACGTGA 61.330 63.158 0.00 0.00 34.75 4.35
177 178 1.507174 GGGTCTCCTTCGACGTGAG 59.493 63.158 0.00 0.00 34.75 3.51
178 179 1.153997 GGTCTCCTTCGACGTGAGC 60.154 63.158 0.00 0.00 34.75 4.26
179 180 1.587933 GGTCTCCTTCGACGTGAGCT 61.588 60.000 0.00 0.00 34.75 4.09
180 181 0.455295 GTCTCCTTCGACGTGAGCTG 60.455 60.000 0.00 0.00 0.00 4.24
181 182 0.889638 TCTCCTTCGACGTGAGCTGT 60.890 55.000 0.00 0.00 0.00 4.40
182 183 0.730834 CTCCTTCGACGTGAGCTGTG 60.731 60.000 0.00 0.00 0.00 3.66
183 184 1.170290 TCCTTCGACGTGAGCTGTGA 61.170 55.000 0.00 0.00 0.00 3.58
184 185 0.109086 CCTTCGACGTGAGCTGTGAT 60.109 55.000 0.00 0.00 0.00 3.06
185 186 0.987715 CTTCGACGTGAGCTGTGATG 59.012 55.000 0.00 0.00 0.00 3.07
186 187 1.008875 TTCGACGTGAGCTGTGATGC 61.009 55.000 0.00 0.00 0.00 3.91
187 188 1.734117 CGACGTGAGCTGTGATGCA 60.734 57.895 0.00 0.00 34.99 3.96
188 189 1.080435 CGACGTGAGCTGTGATGCAT 61.080 55.000 0.00 0.00 34.99 3.96
189 190 0.649475 GACGTGAGCTGTGATGCATC 59.351 55.000 20.14 20.14 34.99 3.91
190 191 0.037046 ACGTGAGCTGTGATGCATCA 60.037 50.000 25.42 25.42 34.99 3.07
198 199 2.190313 TGATGCATCACTCCCGGC 59.810 61.111 25.42 0.00 0.00 6.13
199 200 2.969238 GATGCATCACTCCCGGCG 60.969 66.667 21.92 0.00 0.00 6.46
200 201 3.740128 GATGCATCACTCCCGGCGT 62.740 63.158 21.92 0.00 0.00 5.68
201 202 3.740128 ATGCATCACTCCCGGCGTC 62.740 63.158 6.01 0.00 0.00 5.19
203 204 3.822192 CATCACTCCCGGCGTCGA 61.822 66.667 12.93 0.00 39.00 4.20
204 205 3.518998 ATCACTCCCGGCGTCGAG 61.519 66.667 12.93 16.80 39.00 4.04
205 206 3.989838 ATCACTCCCGGCGTCGAGA 62.990 63.158 23.04 0.27 39.00 4.04
206 207 3.744719 CACTCCCGGCGTCGAGAA 61.745 66.667 23.04 0.00 39.00 2.87
207 208 2.754658 ACTCCCGGCGTCGAGAAT 60.755 61.111 23.04 0.00 39.00 2.40
208 209 1.452651 ACTCCCGGCGTCGAGAATA 60.453 57.895 23.04 0.00 39.00 1.75
209 210 1.008767 CTCCCGGCGTCGAGAATAC 60.009 63.158 12.93 0.00 39.00 1.89
210 211 1.721664 CTCCCGGCGTCGAGAATACA 61.722 60.000 12.93 0.00 39.00 2.29
211 212 1.588139 CCCGGCGTCGAGAATACAC 60.588 63.158 12.93 0.00 39.00 2.90
212 213 1.937846 CCGGCGTCGAGAATACACG 60.938 63.158 12.93 0.00 39.00 4.49
213 214 1.226211 CGGCGTCGAGAATACACGT 60.226 57.895 1.44 0.00 39.00 4.49
214 215 1.461317 CGGCGTCGAGAATACACGTG 61.461 60.000 15.48 15.48 39.00 4.49
215 216 0.179181 GGCGTCGAGAATACACGTGA 60.179 55.000 25.01 6.34 35.91 4.35
216 217 0.905839 GCGTCGAGAATACACGTGAC 59.094 55.000 25.01 6.10 35.91 3.67
217 218 1.169408 CGTCGAGAATACACGTGACG 58.831 55.000 25.01 14.99 0.00 4.35
218 219 1.463034 CGTCGAGAATACACGTGACGT 60.463 52.381 25.01 4.10 42.36 4.34
235 236 2.512289 CGTGTTCGTGTGTCAACAAA 57.488 45.000 0.00 0.00 38.27 2.83
236 237 3.046285 CGTGTTCGTGTGTCAACAAAT 57.954 42.857 0.00 0.00 38.27 2.32
237 238 3.421741 CGTGTTCGTGTGTCAACAAATT 58.578 40.909 0.00 0.00 38.27 1.82
238 239 3.237207 CGTGTTCGTGTGTCAACAAATTG 59.763 43.478 0.00 0.00 38.27 2.32
239 240 4.162812 GTGTTCGTGTGTCAACAAATTGT 58.837 39.130 0.00 0.00 38.27 2.71
240 241 4.030083 GTGTTCGTGTGTCAACAAATTGTG 59.970 41.667 0.00 0.00 38.27 3.33
241 242 4.083271 TGTTCGTGTGTCAACAAATTGTGA 60.083 37.500 0.00 0.00 38.27 3.58
242 243 4.009798 TCGTGTGTCAACAAATTGTGAC 57.990 40.909 16.28 16.28 38.27 3.67
243 244 2.775687 CGTGTGTCAACAAATTGTGACG 59.224 45.455 17.25 9.09 38.27 4.35
244 245 3.484393 CGTGTGTCAACAAATTGTGACGA 60.484 43.478 17.25 6.63 38.27 4.20
245 246 4.597079 GTGTGTCAACAAATTGTGACGAT 58.403 39.130 17.25 0.00 38.27 3.73
246 247 5.557325 CGTGTGTCAACAAATTGTGACGATA 60.557 40.000 17.25 5.49 38.27 2.92
247 248 6.195868 GTGTGTCAACAAATTGTGACGATAA 58.804 36.000 17.25 4.45 38.27 1.75
248 249 6.356977 GTGTGTCAACAAATTGTGACGATAAG 59.643 38.462 17.25 0.00 38.27 1.73
249 250 6.037720 TGTGTCAACAAATTGTGACGATAAGT 59.962 34.615 17.25 0.00 37.11 2.24
250 251 6.356977 GTGTCAACAAATTGTGACGATAAGTG 59.643 38.462 17.25 4.13 37.11 3.16
251 252 5.851177 GTCAACAAATTGTGACGATAAGTGG 59.149 40.000 0.00 0.00 37.11 4.00
252 253 5.049060 TCAACAAATTGTGACGATAAGTGGG 60.049 40.000 0.00 0.00 37.11 4.61
253 254 4.647611 ACAAATTGTGACGATAAGTGGGA 58.352 39.130 0.00 0.00 0.00 4.37
254 255 4.454504 ACAAATTGTGACGATAAGTGGGAC 59.545 41.667 0.00 0.00 0.00 4.46
255 256 2.357327 TTGTGACGATAAGTGGGACG 57.643 50.000 0.00 0.00 0.00 4.79
256 257 0.108992 TGTGACGATAAGTGGGACGC 60.109 55.000 0.00 0.00 40.45 5.19
257 258 0.804933 GTGACGATAAGTGGGACGCC 60.805 60.000 0.00 0.00 41.54 5.68
258 259 1.227176 GACGATAAGTGGGACGCCC 60.227 63.158 7.87 7.87 45.71 6.13
278 279 0.110464 GCAGACAGCGTCTCTTTTGC 60.110 55.000 8.02 6.28 41.37 3.68
279 280 1.220529 CAGACAGCGTCTCTTTTGCA 58.779 50.000 8.02 0.00 41.37 4.08
280 281 1.194098 CAGACAGCGTCTCTTTTGCAG 59.806 52.381 8.02 0.00 41.37 4.41
312 314 1.586422 CATAACCATGGAGACGGCAG 58.414 55.000 21.47 0.00 0.00 4.85
371 386 3.915437 AACGAGAAAATTTCGGTGCAT 57.085 38.095 0.00 0.00 42.12 3.96
374 389 2.262211 GAGAAAATTTCGGTGCATGCC 58.738 47.619 16.68 6.42 34.02 4.40
417 432 7.440281 GCTAGCTTTCGAAATTCAAAATTCAC 58.560 34.615 11.70 0.00 0.00 3.18
420 435 7.621102 AGCTTTCGAAATTCAAAATTCACAAC 58.379 30.769 11.70 0.00 0.00 3.32
421 436 6.845782 GCTTTCGAAATTCAAAATTCACAACC 59.154 34.615 11.70 0.00 0.00 3.77
422 437 7.465245 GCTTTCGAAATTCAAAATTCACAACCA 60.465 33.333 11.70 0.00 0.00 3.67
423 438 6.820470 TCGAAATTCAAAATTCACAACCAC 57.180 33.333 0.00 0.00 0.00 4.16
424 439 5.457148 TCGAAATTCAAAATTCACAACCACG 59.543 36.000 0.00 0.00 0.00 4.94
425 440 5.332205 CGAAATTCAAAATTCACAACCACGG 60.332 40.000 0.00 0.00 0.00 4.94
426 441 3.444703 TTCAAAATTCACAACCACGGG 57.555 42.857 0.00 0.00 0.00 5.28
427 442 1.683917 TCAAAATTCACAACCACGGGG 59.316 47.619 0.00 0.00 41.29 5.73
428 443 1.044611 AAAATTCACAACCACGGGGG 58.955 50.000 9.50 0.00 44.81 5.40
465 485 1.381872 CGGTGGACCTCCTGATCCT 60.382 63.158 10.81 0.00 35.86 3.24
467 487 1.395826 GGTGGACCTCCTGATCCTCG 61.396 65.000 5.27 0.00 35.86 4.63
488 508 2.869237 GCTTTCCTCTTTTCCCGTACGT 60.869 50.000 15.21 0.00 0.00 3.57
539 560 1.448717 GAGCAAGAGGAGGAACGGC 60.449 63.158 0.00 0.00 0.00 5.68
540 561 2.172483 GAGCAAGAGGAGGAACGGCA 62.172 60.000 0.00 0.00 0.00 5.69
541 562 1.302511 GCAAGAGGAGGAACGGCAA 60.303 57.895 0.00 0.00 0.00 4.52
542 563 1.578206 GCAAGAGGAGGAACGGCAAC 61.578 60.000 0.00 0.00 0.00 4.17
616 637 1.616159 TCGTATCTCATCATCGCCCA 58.384 50.000 0.00 0.00 0.00 5.36
831 894 3.370231 CCCGCCCACCTTTTTCCG 61.370 66.667 0.00 0.00 0.00 4.30
850 923 3.197790 CGCCAGAGCATCCAACGG 61.198 66.667 0.00 0.00 39.83 4.44
900 974 1.973515 CCCCATTCCGATCTCATCTCA 59.026 52.381 0.00 0.00 0.00 3.27
903 977 3.509740 CCATTCCGATCTCATCTCATCG 58.490 50.000 0.00 0.00 41.34 3.84
916 992 3.880846 CATCGCCAAAGCCTCCGC 61.881 66.667 0.00 0.00 34.57 5.54
1475 1608 2.527951 GATGACAAGGCCAGGCGACT 62.528 60.000 5.01 0.00 46.44 4.18
1562 1695 3.044305 GGGTAGGCGCGCATCATC 61.044 66.667 34.42 19.03 0.00 2.92
1569 1702 1.431488 GGCGCGCATCATCTTCTTCA 61.431 55.000 34.42 0.00 0.00 3.02
1713 1854 5.220265 CCTTTTGCGCTGCTTTTAATATGTG 60.220 40.000 9.73 0.00 0.00 3.21
1729 1870 2.691409 TGTGAACCGGATCTTCCATC 57.309 50.000 9.46 0.00 35.91 3.51
1773 1914 0.392998 GAGGAGGAAATTGGCGCTCA 60.393 55.000 7.64 0.00 0.00 4.26
1855 1996 8.237267 GTCTATGTGAAGGTGAACCATTTTTAG 58.763 37.037 1.62 0.00 38.89 1.85
1866 2007 7.227910 GGTGAACCATTTTTAGTACTGAGTTCA 59.772 37.037 5.39 10.03 38.86 3.18
1881 2022 9.646427 GTACTGAGTTCAGAGAAATCATTACTT 57.354 33.333 20.48 5.95 46.59 2.24
2201 2345 7.458409 AAGATGTGCATGTAAATCAACTTCT 57.542 32.000 15.43 0.00 0.00 2.85
2371 2516 3.136443 TGAATTCACTCTGTGGTCCTGTT 59.864 43.478 3.38 0.00 33.87 3.16
2438 2583 5.324832 TTTCTTCTTCCTGATTTCCCACT 57.675 39.130 0.00 0.00 0.00 4.00
2563 2712 7.414222 AATGTCATGGATAATGTTCAAGCTT 57.586 32.000 0.00 0.00 37.56 3.74
2684 2833 9.478019 GTTCATAGTGTCAAAAATGATCTTACG 57.522 33.333 0.00 0.00 0.00 3.18
2709 2858 2.571653 TGGGACAGAGGGAGTATGTTTG 59.428 50.000 0.00 0.00 27.90 2.93
2874 3023 6.465439 TGAAGATACGGTATGTCATGAAGT 57.535 37.500 5.18 0.00 0.00 3.01
2875 3024 6.873997 TGAAGATACGGTATGTCATGAAGTT 58.126 36.000 5.18 0.00 0.00 2.66
2876 3025 6.978659 TGAAGATACGGTATGTCATGAAGTTC 59.021 38.462 5.18 0.00 0.00 3.01
3117 3270 8.396272 AGTTTTTGCTCATACTACTTGTCATT 57.604 30.769 0.00 0.00 0.00 2.57
3296 3453 5.523552 TGGATACTTACATCTGTTGCAATCG 59.476 40.000 0.59 0.00 37.61 3.34
3376 3554 1.871676 CTTGGATGGCGTGATCATGAG 59.128 52.381 19.30 5.33 0.00 2.90
3451 3630 6.869421 CATTCGGCGAAATAAAAGAATGTT 57.131 33.333 27.40 1.68 39.71 2.71
3922 4118 3.091545 TGCATTCCCTCTTTCATCAACC 58.908 45.455 0.00 0.00 0.00 3.77
4013 4209 0.801251 GCACTGGAATGCACTCTGTC 59.199 55.000 0.00 0.00 45.39 3.51
4156 4352 4.607293 TGATATATGCTATGGCGATCCC 57.393 45.455 0.00 0.00 42.25 3.85
4215 4411 8.983724 GGTACTATAGACTTGATTGCTCAAATC 58.016 37.037 6.78 0.00 44.37 2.17
4216 4412 8.983724 GTACTATAGACTTGATTGCTCAAATCC 58.016 37.037 6.78 0.00 43.61 3.01
4221 4417 4.273318 ACTTGATTGCTCAAATCCCCTAC 58.727 43.478 0.00 0.00 43.61 3.18
4266 4471 9.421806 CAATTGTTTCCTTGCTTGTATTATTCA 57.578 29.630 0.00 0.00 0.00 2.57
4267 4472 8.986477 ATTGTTTCCTTGCTTGTATTATTCAC 57.014 30.769 0.00 0.00 0.00 3.18
4276 4481 7.921786 TGCTTGTATTATTCACTGCTTACTT 57.078 32.000 0.00 0.00 0.00 2.24
4277 4482 9.443323 TTGCTTGTATTATTCACTGCTTACTTA 57.557 29.630 0.00 0.00 0.00 2.24
4278 4483 9.098355 TGCTTGTATTATTCACTGCTTACTTAG 57.902 33.333 0.00 0.00 0.00 2.18
4400 4610 4.082190 GGACTTAGGTTGGCATCTTTTTCC 60.082 45.833 0.00 0.00 0.00 3.13
4438 4648 7.564793 TCATATATATTCGCCAATACTGCCTT 58.435 34.615 0.00 0.00 0.00 4.35
4583 4799 5.605564 TTCATGTGGTGTCTAATTCGTTG 57.394 39.130 0.00 0.00 0.00 4.10
4596 4812 3.744238 ATTCGTTGTTTTCCAAAGGGG 57.256 42.857 0.00 0.00 34.07 4.79
4921 5137 0.539518 GTGGGGAGCTCTTCCTTCTC 59.460 60.000 14.64 0.00 45.98 2.87
4940 5156 2.808543 CTCGGGTTTGTCTCTTTTCTGG 59.191 50.000 0.00 0.00 0.00 3.86
4986 5202 7.793036 ACACTATTCCTGAATAAGAAGGTACC 58.207 38.462 2.73 2.73 33.34 3.34
5662 5906 8.439286 GTTCTAAGTCATTCTGTTCTGTCATTC 58.561 37.037 0.00 0.00 0.00 2.67
5849 6097 5.505181 TCTCTTGTTGCCTTATCCTTCTT 57.495 39.130 0.00 0.00 0.00 2.52
5995 6243 7.652105 GGAAAACCTTTGGTACTTGAATCTTTC 59.348 37.037 0.00 0.00 33.12 2.62
6117 6365 4.533311 AGGGGAAATCACCGAAGTAAGTAA 59.467 41.667 0.00 0.00 46.41 2.24
6221 6472 2.296190 GTGGGATGAAACTGTTCCAACC 59.704 50.000 0.00 0.00 32.28 3.77
6251 6502 2.281484 GCCGAGCCTCACAACCAA 60.281 61.111 0.00 0.00 0.00 3.67
6258 6509 1.142870 AGCCTCACAACCAAGTAAGCA 59.857 47.619 0.00 0.00 0.00 3.91
6404 6657 2.952978 TGAAAATGCACGGTTACAAGGT 59.047 40.909 0.00 0.00 0.00 3.50
6494 6747 3.208594 TCATCCAGTAGTGCATTGCATC 58.791 45.455 15.49 8.69 41.91 3.91
6506 6759 3.947196 TGCATTGCATCGAAAGGAACTAT 59.053 39.130 7.38 0.00 31.16 2.12
6530 6783 2.936498 CTGTATGGTTTCTGTAAGGCCG 59.064 50.000 0.00 0.00 0.00 6.13
6581 6834 5.065914 AGTATGAAGCTGATTTGTGTGTGT 58.934 37.500 0.00 0.00 0.00 3.72
6588 6841 3.708890 CTGATTTGTGTGTGTTGTGCAT 58.291 40.909 0.00 0.00 0.00 3.96
6783 7036 4.661247 AGGAGTAGTGGAGAAGTAGTGT 57.339 45.455 0.00 0.00 0.00 3.55
6804 7057 7.852263 AGTGTAGGCAGAATAGTTATTTGACT 58.148 34.615 0.00 7.24 31.63 3.41
6807 7060 8.100791 TGTAGGCAGAATAGTTATTTGACTTGT 58.899 33.333 7.33 0.00 30.38 3.16
6808 7061 7.383102 AGGCAGAATAGTTATTTGACTTGTG 57.617 36.000 0.00 0.00 0.00 3.33
6851 7104 2.762472 CGTGAGATGTCGAAACATTGC 58.238 47.619 0.00 0.00 46.20 3.56
6912 7165 9.425893 GAAACGTTTGTAACTTAAACTAGGTTC 57.574 33.333 20.10 0.00 36.22 3.62
7008 7296 4.691238 ACCCCTATACTGTGGTCTGTTTA 58.309 43.478 0.00 0.00 0.00 2.01
7010 7298 5.130477 ACCCCTATACTGTGGTCTGTTTATG 59.870 44.000 0.00 0.00 0.00 1.90
7197 7524 9.354673 TCTTTGAACTGAAAAATAGTCCTCAAT 57.645 29.630 0.00 0.00 29.80 2.57
7310 7639 9.490379 GTCCTCTTATGTTTTCTTTCAGAGTTA 57.510 33.333 0.00 0.00 0.00 2.24
7374 7703 9.562408 TTACTATTTGTGATTTCAGTGTAACCA 57.438 29.630 0.00 0.00 37.80 3.67
7375 7704 7.871853 ACTATTTGTGATTTCAGTGTAACCAC 58.128 34.615 0.13 0.13 42.17 4.16
7384 7713 2.327228 GTGTAACCACTGTGCACCC 58.673 57.895 15.69 0.00 38.61 4.61
7385 7714 0.179029 GTGTAACCACTGTGCACCCT 60.179 55.000 15.69 0.00 38.61 4.34
7386 7715 0.548989 TGTAACCACTGTGCACCCTT 59.451 50.000 15.69 0.78 0.00 3.95
7387 7716 0.951558 GTAACCACTGTGCACCCTTG 59.048 55.000 15.69 8.38 0.00 3.61
7413 7742 5.181690 CTAGGCTACAGCTTAGTTCTCAG 57.818 47.826 11.19 0.00 43.24 3.35
7414 7743 3.436243 AGGCTACAGCTTAGTTCTCAGT 58.564 45.455 0.54 0.00 41.70 3.41
7415 7744 3.194542 AGGCTACAGCTTAGTTCTCAGTG 59.805 47.826 0.54 0.00 41.70 3.66
7416 7745 3.056465 GGCTACAGCTTAGTTCTCAGTGT 60.056 47.826 0.54 0.00 41.70 3.55
7417 7746 4.158025 GGCTACAGCTTAGTTCTCAGTGTA 59.842 45.833 0.54 0.00 41.70 2.90
7418 7747 5.336744 GCTACAGCTTAGTTCTCAGTGTAG 58.663 45.833 0.00 0.00 39.15 2.74
7419 7748 4.181309 ACAGCTTAGTTCTCAGTGTAGC 57.819 45.455 0.00 0.00 0.00 3.58
7420 7749 3.056465 ACAGCTTAGTTCTCAGTGTAGCC 60.056 47.826 0.00 0.00 0.00 3.93
7483 7812 6.577103 CAGGTCTTCATGCTACTTCTGAATA 58.423 40.000 0.00 0.00 0.00 1.75
7554 7897 8.736742 GCACATTCACTCAATATAAATTGTTCG 58.263 33.333 0.00 0.00 42.66 3.95
7562 7905 9.935682 ACTCAATATAAATTGTTCGCTGTATTG 57.064 29.630 0.00 0.00 42.66 1.90
7602 7945 2.224079 CCTGAACTTGTTCATGTCCACG 59.776 50.000 15.35 3.81 0.00 4.94
7615 7958 3.913548 TGTCCACGAATCCACATTTTG 57.086 42.857 0.00 0.00 0.00 2.44
7643 7986 6.950860 TTTATATGATCCATGCCTACAGGA 57.049 37.500 0.00 0.00 37.39 3.86
7764 8120 8.964150 CAGTGTGTTTTATTTTAGTTTACAGCC 58.036 33.333 0.00 0.00 0.00 4.85
7769 8125 8.697292 TGTTTTATTTTAGTTTACAGCCCAGTT 58.303 29.630 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.157932 AGATTCGCAGCTCTTAGACAC 57.842 47.619 0.00 0.00 0.00 3.67
2 3 3.193479 TCAAGATTCGCAGCTCTTAGACA 59.807 43.478 0.00 0.00 30.27 3.41
3 4 3.775202 TCAAGATTCGCAGCTCTTAGAC 58.225 45.455 0.00 0.00 30.27 2.59
6 7 2.739932 GCCTCAAGATTCGCAGCTCTTA 60.740 50.000 0.00 0.00 30.27 2.10
7 8 2.011046 GCCTCAAGATTCGCAGCTCTT 61.011 52.381 0.00 0.00 31.21 2.85
8 9 0.461693 GCCTCAAGATTCGCAGCTCT 60.462 55.000 0.00 0.00 0.00 4.09
9 10 0.461693 AGCCTCAAGATTCGCAGCTC 60.462 55.000 0.00 0.00 0.00 4.09
10 11 0.461693 GAGCCTCAAGATTCGCAGCT 60.462 55.000 0.00 0.00 0.00 4.24
11 12 0.461693 AGAGCCTCAAGATTCGCAGC 60.462 55.000 0.00 0.00 0.00 5.25
12 13 2.545532 CCTAGAGCCTCAAGATTCGCAG 60.546 54.545 0.00 0.00 0.00 5.18
13 14 1.410517 CCTAGAGCCTCAAGATTCGCA 59.589 52.381 0.00 0.00 0.00 5.10
14 15 1.270041 CCCTAGAGCCTCAAGATTCGC 60.270 57.143 0.00 0.00 0.00 4.70
15 16 1.270041 GCCCTAGAGCCTCAAGATTCG 60.270 57.143 0.00 0.00 0.00 3.34
16 17 1.270041 CGCCCTAGAGCCTCAAGATTC 60.270 57.143 0.00 0.00 0.00 2.52
17 18 0.755686 CGCCCTAGAGCCTCAAGATT 59.244 55.000 0.00 0.00 0.00 2.40
18 19 0.105964 TCGCCCTAGAGCCTCAAGAT 60.106 55.000 0.00 0.00 0.00 2.40
19 20 0.753479 CTCGCCCTAGAGCCTCAAGA 60.753 60.000 0.00 0.00 0.00 3.02
20 21 1.739049 CTCGCCCTAGAGCCTCAAG 59.261 63.158 0.00 0.00 0.00 3.02
21 22 3.941081 CTCGCCCTAGAGCCTCAA 58.059 61.111 0.00 0.00 0.00 3.02
27 28 1.081774 CGATTCGCTCGCCCTAGAG 60.082 63.158 0.00 0.00 41.14 2.43
28 29 3.031495 CGATTCGCTCGCCCTAGA 58.969 61.111 0.00 0.00 41.14 2.43
32 33 2.345880 TTAGGTCGATTCGCTCGCCC 62.346 60.000 0.00 7.72 45.74 6.13
36 37 0.102481 TGCCTTAGGTCGATTCGCTC 59.898 55.000 0.00 0.00 0.00 5.03
37 38 0.103208 CTGCCTTAGGTCGATTCGCT 59.897 55.000 0.00 0.00 0.00 4.93
38 39 1.491505 GCTGCCTTAGGTCGATTCGC 61.492 60.000 0.00 0.00 0.00 4.70
39 40 0.876342 GGCTGCCTTAGGTCGATTCG 60.876 60.000 12.43 0.00 0.00 3.34
40 41 0.533085 GGGCTGCCTTAGGTCGATTC 60.533 60.000 19.68 0.00 0.00 2.52
41 42 1.271840 TGGGCTGCCTTAGGTCGATT 61.272 55.000 19.68 0.00 0.00 3.34
42 43 1.056700 ATGGGCTGCCTTAGGTCGAT 61.057 55.000 19.68 0.00 0.00 3.59
43 44 0.397957 TATGGGCTGCCTTAGGTCGA 60.398 55.000 19.68 0.00 0.00 4.20
44 45 0.034059 CTATGGGCTGCCTTAGGTCG 59.966 60.000 19.68 0.00 0.00 4.79
45 46 0.250510 GCTATGGGCTGCCTTAGGTC 60.251 60.000 19.68 0.54 38.06 3.85
46 47 1.709994 GGCTATGGGCTGCCTTAGGT 61.710 60.000 19.68 3.07 45.26 3.08
47 48 1.073897 GGCTATGGGCTGCCTTAGG 59.926 63.158 19.68 8.12 45.26 2.69
48 49 1.302033 CGGCTATGGGCTGCCTTAG 60.302 63.158 19.68 19.09 46.42 2.18
49 50 2.828868 CGGCTATGGGCTGCCTTA 59.171 61.111 19.68 8.66 46.42 2.69
89 90 4.585216 AACCCCACACCTCCGGGA 62.585 66.667 0.00 0.00 46.34 5.14
90 91 3.141421 AAAACCCCACACCTCCGGG 62.141 63.158 0.00 0.00 43.05 5.73
91 92 1.602605 GAAAACCCCACACCTCCGG 60.603 63.158 0.00 0.00 0.00 5.14
92 93 1.964373 CGAAAACCCCACACCTCCG 60.964 63.158 0.00 0.00 0.00 4.63
93 94 1.602605 CCGAAAACCCCACACCTCC 60.603 63.158 0.00 0.00 0.00 4.30
94 95 1.602605 CCCGAAAACCCCACACCTC 60.603 63.158 0.00 0.00 0.00 3.85
95 96 2.347691 GACCCGAAAACCCCACACCT 62.348 60.000 0.00 0.00 0.00 4.00
96 97 1.900016 GACCCGAAAACCCCACACC 60.900 63.158 0.00 0.00 0.00 4.16
97 98 1.149854 AGACCCGAAAACCCCACAC 59.850 57.895 0.00 0.00 0.00 3.82
98 99 1.149627 CAGACCCGAAAACCCCACA 59.850 57.895 0.00 0.00 0.00 4.17
99 100 2.265904 GCAGACCCGAAAACCCCAC 61.266 63.158 0.00 0.00 0.00 4.61
100 101 2.114411 GCAGACCCGAAAACCCCA 59.886 61.111 0.00 0.00 0.00 4.96
101 102 1.110518 TTTGCAGACCCGAAAACCCC 61.111 55.000 0.00 0.00 0.00 4.95
102 103 0.747852 TTTTGCAGACCCGAAAACCC 59.252 50.000 0.00 0.00 0.00 4.11
103 104 1.868109 GCTTTTGCAGACCCGAAAACC 60.868 52.381 0.00 0.00 46.58 3.27
104 105 1.487482 GCTTTTGCAGACCCGAAAAC 58.513 50.000 0.00 0.00 46.58 2.43
105 106 3.957383 GCTTTTGCAGACCCGAAAA 57.043 47.368 0.00 0.00 46.58 2.29
117 118 1.157870 ACAGTCGACGGGTGCTTTTG 61.158 55.000 19.84 7.33 0.00 2.44
118 119 0.878961 GACAGTCGACGGGTGCTTTT 60.879 55.000 19.84 0.00 0.00 2.27
119 120 1.300697 GACAGTCGACGGGTGCTTT 60.301 57.895 19.84 0.00 0.00 3.51
120 121 1.745320 AAGACAGTCGACGGGTGCTT 61.745 55.000 19.84 15.50 0.00 3.91
121 122 2.201022 AAGACAGTCGACGGGTGCT 61.201 57.895 19.84 10.75 0.00 4.40
122 123 2.022129 CAAGACAGTCGACGGGTGC 61.022 63.158 19.84 8.72 0.00 5.01
123 124 2.022129 GCAAGACAGTCGACGGGTG 61.022 63.158 19.84 14.50 0.00 4.61
124 125 2.338984 GCAAGACAGTCGACGGGT 59.661 61.111 19.84 17.04 0.00 5.28
125 126 2.191354 TACGCAAGACAGTCGACGGG 62.191 60.000 19.84 13.94 43.62 5.28
126 127 0.179171 ATACGCAAGACAGTCGACGG 60.179 55.000 14.42 14.42 43.62 4.79
127 128 1.181001 GATACGCAAGACAGTCGACG 58.819 55.000 10.46 7.86 43.62 5.12
128 129 1.181001 CGATACGCAAGACAGTCGAC 58.819 55.000 7.70 7.70 43.62 4.20
129 130 3.598678 CGATACGCAAGACAGTCGA 57.401 52.632 0.00 0.00 43.62 4.20
142 143 3.017314 CGACCGACAGCGCGATAC 61.017 66.667 12.10 0.00 35.83 2.24
143 144 4.246206 CCGACCGACAGCGCGATA 62.246 66.667 12.10 0.00 35.83 2.92
148 149 4.477975 GAGACCCGACCGACAGCG 62.478 72.222 0.00 0.00 37.24 5.18
149 150 4.131088 GGAGACCCGACCGACAGC 62.131 72.222 0.00 0.00 0.00 4.40
150 151 1.935327 GAAGGAGACCCGACCGACAG 61.935 65.000 0.00 0.00 37.58 3.51
151 152 1.975407 GAAGGAGACCCGACCGACA 60.975 63.158 0.00 0.00 37.58 4.35
152 153 2.883621 GAAGGAGACCCGACCGAC 59.116 66.667 0.00 0.00 37.58 4.79
153 154 2.749044 CGAAGGAGACCCGACCGA 60.749 66.667 0.00 0.00 37.58 4.69
154 155 2.749044 TCGAAGGAGACCCGACCG 60.749 66.667 0.00 0.00 37.58 4.79
155 156 2.883621 GTCGAAGGAGACCCGACC 59.116 66.667 0.00 0.00 45.39 4.79
156 157 2.331132 ACGTCGAAGGAGACCCGAC 61.331 63.158 0.00 0.00 46.67 4.79
157 158 2.033141 ACGTCGAAGGAGACCCGA 59.967 61.111 0.00 0.00 37.85 5.14
158 159 2.178521 CACGTCGAAGGAGACCCG 59.821 66.667 0.00 0.00 37.85 5.28
159 160 1.507174 CTCACGTCGAAGGAGACCC 59.493 63.158 0.00 0.00 37.85 4.46
160 161 1.153997 GCTCACGTCGAAGGAGACC 60.154 63.158 16.63 0.00 37.85 3.85
161 162 0.455295 CAGCTCACGTCGAAGGAGAC 60.455 60.000 16.63 10.11 37.76 3.36
162 163 0.889638 ACAGCTCACGTCGAAGGAGA 60.890 55.000 16.63 7.92 0.00 3.71
163 164 0.730834 CACAGCTCACGTCGAAGGAG 60.731 60.000 0.00 7.74 0.00 3.69
164 165 1.170290 TCACAGCTCACGTCGAAGGA 61.170 55.000 0.00 0.00 0.00 3.36
165 166 0.109086 ATCACAGCTCACGTCGAAGG 60.109 55.000 0.00 0.00 0.00 3.46
166 167 0.987715 CATCACAGCTCACGTCGAAG 59.012 55.000 0.00 0.00 0.00 3.79
167 168 1.008875 GCATCACAGCTCACGTCGAA 61.009 55.000 0.00 0.00 0.00 3.71
168 169 1.444383 GCATCACAGCTCACGTCGA 60.444 57.895 0.00 0.00 0.00 4.20
169 170 1.080435 ATGCATCACAGCTCACGTCG 61.080 55.000 0.00 0.00 34.99 5.12
170 171 0.649475 GATGCATCACAGCTCACGTC 59.351 55.000 21.92 0.00 34.99 4.34
171 172 0.037046 TGATGCATCACAGCTCACGT 60.037 50.000 25.42 0.00 35.06 4.49
172 173 2.758497 TGATGCATCACAGCTCACG 58.242 52.632 25.42 0.00 35.06 4.35
181 182 2.190313 GCCGGGAGTGATGCATCA 59.810 61.111 25.42 25.42 0.00 3.07
182 183 2.969238 CGCCGGGAGTGATGCATC 60.969 66.667 20.14 20.14 0.00 3.91
183 184 3.740128 GACGCCGGGAGTGATGCAT 62.740 63.158 8.55 0.00 0.00 3.96
184 185 4.451150 GACGCCGGGAGTGATGCA 62.451 66.667 8.55 0.00 0.00 3.96
186 187 3.758088 CTCGACGCCGGGAGTGATG 62.758 68.421 8.55 0.00 38.95 3.07
187 188 3.518998 CTCGACGCCGGGAGTGAT 61.519 66.667 8.55 0.00 38.95 3.06
188 189 4.710167 TCTCGACGCCGGGAGTGA 62.710 66.667 8.55 5.59 40.95 3.41
192 193 1.750018 TGTATTCTCGACGCCGGGA 60.750 57.895 2.18 0.00 44.71 5.14
193 194 1.588139 GTGTATTCTCGACGCCGGG 60.588 63.158 2.18 0.00 37.69 5.73
194 195 1.937846 CGTGTATTCTCGACGCCGG 60.938 63.158 0.00 0.00 36.24 6.13
195 196 1.226211 ACGTGTATTCTCGACGCCG 60.226 57.895 0.69 0.00 36.56 6.46
196 197 0.179181 TCACGTGTATTCTCGACGCC 60.179 55.000 16.51 0.00 36.56 5.68
197 198 0.905839 GTCACGTGTATTCTCGACGC 59.094 55.000 16.51 0.00 36.56 5.19
198 199 1.169408 CGTCACGTGTATTCTCGACG 58.831 55.000 16.51 11.44 39.03 5.12
199 200 2.238245 ACGTCACGTGTATTCTCGAC 57.762 50.000 16.51 2.42 39.18 4.20
210 211 1.135699 GACACACGAACACGTCACGT 61.136 55.000 0.00 0.00 42.36 4.49
211 212 1.135114 TGACACACGAACACGTCACG 61.135 55.000 0.00 0.00 38.21 4.35
212 213 0.993532 TTGACACACGAACACGTCAC 59.006 50.000 0.00 0.00 38.07 3.67
213 214 0.993532 GTTGACACACGAACACGTCA 59.006 50.000 0.00 0.00 38.21 4.35
214 215 0.993532 TGTTGACACACGAACACGTC 59.006 50.000 0.00 0.00 38.21 4.34
215 216 1.430479 TTGTTGACACACGAACACGT 58.570 45.000 0.00 0.00 41.02 4.49
216 217 2.512289 TTTGTTGACACACGAACACG 57.488 45.000 0.00 0.00 31.85 4.49
217 218 4.030083 CACAATTTGTTGACACACGAACAC 59.970 41.667 0.00 0.00 31.85 3.32
218 219 4.083271 TCACAATTTGTTGACACACGAACA 60.083 37.500 0.00 0.00 30.32 3.18
219 220 4.262045 GTCACAATTTGTTGACACACGAAC 59.738 41.667 18.78 0.00 32.54 3.95
220 221 4.407818 GTCACAATTTGTTGACACACGAA 58.592 39.130 18.78 0.00 32.54 3.85
221 222 3.484393 CGTCACAATTTGTTGACACACGA 60.484 43.478 21.26 5.75 32.11 4.35
222 223 2.775687 CGTCACAATTTGTTGACACACG 59.224 45.455 21.26 11.55 32.11 4.49
223 224 4.009798 TCGTCACAATTTGTTGACACAC 57.990 40.909 21.26 6.02 32.11 3.82
224 225 4.891627 ATCGTCACAATTTGTTGACACA 57.108 36.364 21.26 13.12 32.11 3.72
225 226 6.356977 CACTTATCGTCACAATTTGTTGACAC 59.643 38.462 21.26 8.96 32.11 3.67
226 227 6.426327 CACTTATCGTCACAATTTGTTGACA 58.574 36.000 21.26 13.82 32.11 3.58
227 228 5.851177 CCACTTATCGTCACAATTTGTTGAC 59.149 40.000 15.93 15.93 0.00 3.18
228 229 5.049060 CCCACTTATCGTCACAATTTGTTGA 60.049 40.000 0.00 0.00 0.00 3.18
229 230 5.049060 TCCCACTTATCGTCACAATTTGTTG 60.049 40.000 0.00 0.00 0.00 3.33
230 231 5.048991 GTCCCACTTATCGTCACAATTTGTT 60.049 40.000 0.00 0.00 0.00 2.83
231 232 4.454504 GTCCCACTTATCGTCACAATTTGT 59.545 41.667 0.00 0.00 0.00 2.83
232 233 4.435518 CGTCCCACTTATCGTCACAATTTG 60.436 45.833 0.00 0.00 0.00 2.32
233 234 3.682858 CGTCCCACTTATCGTCACAATTT 59.317 43.478 0.00 0.00 0.00 1.82
234 235 3.259064 CGTCCCACTTATCGTCACAATT 58.741 45.455 0.00 0.00 0.00 2.32
235 236 2.888594 CGTCCCACTTATCGTCACAAT 58.111 47.619 0.00 0.00 0.00 2.71
236 237 1.670674 GCGTCCCACTTATCGTCACAA 60.671 52.381 0.00 0.00 0.00 3.33
237 238 0.108992 GCGTCCCACTTATCGTCACA 60.109 55.000 0.00 0.00 0.00 3.58
238 239 0.804933 GGCGTCCCACTTATCGTCAC 60.805 60.000 0.00 0.00 0.00 3.67
239 240 1.514087 GGCGTCCCACTTATCGTCA 59.486 57.895 0.00 0.00 0.00 4.35
240 241 1.227176 GGGCGTCCCACTTATCGTC 60.227 63.158 9.72 0.00 44.65 4.20
241 242 2.897972 GGGCGTCCCACTTATCGT 59.102 61.111 9.72 0.00 44.65 3.73
242 243 2.279252 CGGGCGTCCCACTTATCG 60.279 66.667 14.17 0.00 45.83 2.92
243 244 2.588034 GCGGGCGTCCCACTTATC 60.588 66.667 14.17 0.00 45.83 1.75
244 245 3.385749 CTGCGGGCGTCCCACTTAT 62.386 63.158 14.17 0.00 45.83 1.73
245 246 4.077184 CTGCGGGCGTCCCACTTA 62.077 66.667 14.17 0.00 45.83 2.24
259 260 0.110464 GCAAAAGAGACGCTGTCTGC 60.110 55.000 14.47 9.18 43.53 4.26
260 261 1.194098 CTGCAAAAGAGACGCTGTCTG 59.806 52.381 14.47 3.97 43.53 3.51
261 262 1.506493 CTGCAAAAGAGACGCTGTCT 58.494 50.000 10.33 10.33 46.42 3.41
262 263 0.110464 GCTGCAAAAGAGACGCTGTC 60.110 55.000 0.00 1.15 0.00 3.51
263 264 1.510480 GGCTGCAAAAGAGACGCTGT 61.510 55.000 0.50 0.00 0.00 4.40
264 265 1.208614 GGCTGCAAAAGAGACGCTG 59.791 57.895 0.50 0.00 0.00 5.18
265 266 0.819259 TTGGCTGCAAAAGAGACGCT 60.819 50.000 0.50 0.00 0.00 5.07
266 267 0.030638 TTTGGCTGCAAAAGAGACGC 59.969 50.000 0.50 0.00 0.00 5.19
267 268 1.600413 GGTTTGGCTGCAAAAGAGACG 60.600 52.381 1.62 0.00 0.00 4.18
268 269 1.269778 GGGTTTGGCTGCAAAAGAGAC 60.270 52.381 1.62 0.00 0.00 3.36
269 270 1.039856 GGGTTTGGCTGCAAAAGAGA 58.960 50.000 1.62 0.00 0.00 3.10
270 271 0.752054 TGGGTTTGGCTGCAAAAGAG 59.248 50.000 1.62 0.00 0.00 2.85
271 272 1.422531 ATGGGTTTGGCTGCAAAAGA 58.577 45.000 1.62 0.00 0.00 2.52
272 273 2.145536 GAATGGGTTTGGCTGCAAAAG 58.854 47.619 1.62 0.00 0.00 2.27
273 274 1.202746 GGAATGGGTTTGGCTGCAAAA 60.203 47.619 0.50 0.00 0.00 2.44
274 275 0.396060 GGAATGGGTTTGGCTGCAAA 59.604 50.000 0.50 0.00 0.00 3.68
275 276 0.762082 TGGAATGGGTTTGGCTGCAA 60.762 50.000 0.50 0.00 0.00 4.08
276 277 0.544833 ATGGAATGGGTTTGGCTGCA 60.545 50.000 0.50 0.00 0.00 4.41
277 278 1.484038 TATGGAATGGGTTTGGCTGC 58.516 50.000 0.00 0.00 0.00 5.25
278 279 2.168313 GGTTATGGAATGGGTTTGGCTG 59.832 50.000 0.00 0.00 0.00 4.85
279 280 2.225496 TGGTTATGGAATGGGTTTGGCT 60.225 45.455 0.00 0.00 0.00 4.75
280 281 2.183679 TGGTTATGGAATGGGTTTGGC 58.816 47.619 0.00 0.00 0.00 4.52
312 314 1.299850 GCTCCCACGGTTTGTTTGC 60.300 57.895 0.00 0.00 0.00 3.68
339 354 2.387125 TTCTCGTTTGCCGCTTGTGC 62.387 55.000 0.00 0.00 36.19 4.57
425 440 2.862223 CGCGATCCTCTCTTCCCCC 61.862 68.421 0.00 0.00 0.00 5.40
426 441 2.731374 CGCGATCCTCTCTTCCCC 59.269 66.667 0.00 0.00 0.00 4.81
427 442 1.392710 TTCCGCGATCCTCTCTTCCC 61.393 60.000 8.23 0.00 0.00 3.97
428 443 0.249114 GTTCCGCGATCCTCTCTTCC 60.249 60.000 8.23 0.00 0.00 3.46
429 444 0.592754 CGTTCCGCGATCCTCTCTTC 60.593 60.000 8.23 0.00 44.77 2.87
430 445 1.433879 CGTTCCGCGATCCTCTCTT 59.566 57.895 8.23 0.00 44.77 2.85
431 446 2.482333 CCGTTCCGCGATCCTCTCT 61.482 63.158 8.23 0.00 44.77 3.10
432 447 2.026301 CCGTTCCGCGATCCTCTC 59.974 66.667 8.23 0.00 44.77 3.20
449 469 2.022240 GCGAGGATCAGGAGGTCCAC 62.022 65.000 0.00 0.00 38.89 4.02
450 470 1.758514 GCGAGGATCAGGAGGTCCA 60.759 63.158 0.00 0.00 38.89 4.02
451 471 1.045911 AAGCGAGGATCAGGAGGTCC 61.046 60.000 0.00 0.00 33.17 4.46
452 472 0.827368 AAAGCGAGGATCAGGAGGTC 59.173 55.000 0.00 0.00 33.17 3.85
453 473 0.827368 GAAAGCGAGGATCAGGAGGT 59.173 55.000 0.00 0.00 33.17 3.85
465 485 0.395312 ACGGGAAAAGAGGAAAGCGA 59.605 50.000 0.00 0.00 0.00 4.93
467 487 1.730612 CGTACGGGAAAAGAGGAAAGC 59.269 52.381 7.57 0.00 0.00 3.51
488 508 1.955663 CGCCTGCTGCATGCGTATA 60.956 57.895 33.80 0.00 46.63 1.47
539 560 2.287769 CTTTGCTTTTGGGGTTGGTTG 58.712 47.619 0.00 0.00 0.00 3.77
540 561 1.211703 CCTTTGCTTTTGGGGTTGGTT 59.788 47.619 0.00 0.00 0.00 3.67
541 562 0.836606 CCTTTGCTTTTGGGGTTGGT 59.163 50.000 0.00 0.00 0.00 3.67
542 563 1.070601 CTCCTTTGCTTTTGGGGTTGG 59.929 52.381 0.00 0.00 0.00 3.77
674 707 4.436998 CTCACGCACGGGGGAGAC 62.437 72.222 9.47 0.00 0.00 3.36
688 721 2.997315 CCACCCGTCAGAGGCTCA 60.997 66.667 18.26 0.00 0.00 4.26
770 821 1.675483 CTGTGCACTGTGTTGGCTTAA 59.325 47.619 19.41 0.00 0.00 1.85
771 822 1.308047 CTGTGCACTGTGTTGGCTTA 58.692 50.000 19.41 0.00 0.00 3.09
772 823 2.008268 GCTGTGCACTGTGTTGGCTT 62.008 55.000 22.70 0.00 0.00 4.35
778 829 2.969238 GCTCGCTGTGCACTGTGT 60.969 61.111 29.04 0.00 0.00 3.72
804 859 4.122149 TGGGCGGGAATGCGGAAT 62.122 61.111 0.00 0.00 35.06 3.01
831 894 2.456119 CGTTGGATGCTCTGGCGAC 61.456 63.158 0.00 0.00 42.25 5.19
850 923 1.263356 GAGGGGGTGGTTAAAAAGGC 58.737 55.000 0.00 0.00 0.00 4.35
916 992 4.410400 GGTGGAGGCGAAGGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
1099 1175 4.500116 GACCTCAGCCTCCGCGTC 62.500 72.222 4.92 0.00 41.18 5.19
1102 1178 4.200283 CTCGACCTCAGCCTCCGC 62.200 72.222 0.00 0.00 0.00 5.54
1103 1179 4.200283 GCTCGACCTCAGCCTCCG 62.200 72.222 0.00 0.00 0.00 4.63
1296 1405 1.384525 ACTTCATCTCCTCCGAGTCG 58.615 55.000 5.29 5.29 37.40 4.18
1297 1406 2.755655 TCAACTTCATCTCCTCCGAGTC 59.244 50.000 0.00 0.00 37.40 3.36
1298 1407 2.808919 TCAACTTCATCTCCTCCGAGT 58.191 47.619 0.00 0.00 37.40 4.18
1299 1408 3.549827 CGATCAACTTCATCTCCTCCGAG 60.550 52.174 0.00 0.00 37.48 4.63
1300 1409 2.359214 CGATCAACTTCATCTCCTCCGA 59.641 50.000 0.00 0.00 0.00 4.55
1301 1410 2.359214 TCGATCAACTTCATCTCCTCCG 59.641 50.000 0.00 0.00 0.00 4.63
1302 1411 3.243704 CCTCGATCAACTTCATCTCCTCC 60.244 52.174 0.00 0.00 0.00 4.30
1303 1412 3.634448 TCCTCGATCAACTTCATCTCCTC 59.366 47.826 0.00 0.00 0.00 3.71
1304 1413 3.636300 CTCCTCGATCAACTTCATCTCCT 59.364 47.826 0.00 0.00 0.00 3.69
1305 1414 3.243704 CCTCCTCGATCAACTTCATCTCC 60.244 52.174 0.00 0.00 0.00 3.71
1306 1415 3.634448 TCCTCCTCGATCAACTTCATCTC 59.366 47.826 0.00 0.00 0.00 2.75
1307 1416 3.636300 CTCCTCCTCGATCAACTTCATCT 59.364 47.826 0.00 0.00 0.00 2.90
1308 1417 3.243704 CCTCCTCCTCGATCAACTTCATC 60.244 52.174 0.00 0.00 0.00 2.92
1449 1582 0.394216 TGGCCTTGTCATCCGGAATG 60.394 55.000 9.01 7.95 36.65 2.67
1452 1585 2.669133 CCTGGCCTTGTCATCCGGA 61.669 63.158 6.61 6.61 0.00 5.14
1545 1678 2.996168 AAGATGATGCGCGCCTACCC 62.996 60.000 30.77 14.99 0.00 3.69
1562 1695 5.381174 TTTCCAGTGCATGAATGAAGAAG 57.619 39.130 0.00 0.00 0.00 2.85
1569 1702 1.135527 CGGCATTTCCAGTGCATGAAT 59.864 47.619 0.00 0.00 44.25 2.57
1649 1788 3.124297 GGTGAGATCAAGAGCGAAACAAG 59.876 47.826 0.00 0.00 0.00 3.16
1713 1854 2.555199 CACAGATGGAAGATCCGGTTC 58.445 52.381 0.00 1.92 40.17 3.62
1729 1870 5.284428 GATCATTAGATCTGCATGCACAG 57.716 43.478 18.46 8.64 45.80 3.66
1773 1914 2.495155 TGCAGATGTGTAGTGGCATT 57.505 45.000 0.00 0.00 0.00 3.56
1855 1996 9.646427 AAGTAATGATTTCTCTGAACTCAGTAC 57.354 33.333 20.22 20.22 44.12 2.73
1904 2045 7.795734 CAGTCGATGAATAATCAATGCAACTAC 59.204 37.037 0.00 0.00 39.49 2.73
1960 2101 2.794350 TCATACGCTGCAATCATGTACG 59.206 45.455 0.00 0.00 0.00 3.67
2181 2325 6.631971 TTCAGAAGTTGATTTACATGCACA 57.368 33.333 0.00 0.00 35.27 4.57
2438 2583 9.701098 ATATAACACGAGAAAAAGAGTTGTACA 57.299 29.630 0.00 0.00 0.00 2.90
2612 2761 8.404000 AGCTTATAAACAAGAAGAATGCAGATG 58.596 33.333 0.00 0.00 0.00 2.90
2684 2833 3.009143 ACATACTCCCTCTGTCCCAAAAC 59.991 47.826 0.00 0.00 0.00 2.43
2733 2882 4.022935 CAGCCTGCAGTCACTCAAAATAAA 60.023 41.667 13.81 0.00 0.00 1.40
3086 3235 9.736023 CAAGTAGTATGAGCAAAAACTCTTTTT 57.264 29.630 0.00 0.00 43.20 1.94
3117 3270 6.455360 AACAACAAAAAGATCAGCAGAAGA 57.545 33.333 0.00 0.00 0.00 2.87
3376 3554 5.105473 TGTCCTGTACCAGTTCAGTATAAGC 60.105 44.000 4.09 0.00 0.00 3.09
3848 4044 3.865224 GCACTTTGCCAATTTCAACTG 57.135 42.857 0.00 0.00 37.42 3.16
4013 4209 3.577649 ACTGTGGACGACATACTTCTG 57.422 47.619 0.00 0.00 32.74 3.02
4129 4325 6.286240 TCGCCATAGCATATATCAAGAAGT 57.714 37.500 0.00 0.00 39.83 3.01
4156 4352 4.081697 AGGCCATCTTTTCCGGTTTTATTG 60.082 41.667 5.01 0.00 0.00 1.90
4221 4417 8.087982 ACAATTGACTACATGAACTACACAAG 57.912 34.615 13.59 0.00 0.00 3.16
4266 4471 9.947669 CGTATAACTATGTTCTAAGTAAGCAGT 57.052 33.333 0.00 0.00 0.00 4.40
4382 4592 5.636123 TGTAAGGAAAAAGATGCCAACCTA 58.364 37.500 0.00 0.00 0.00 3.08
4432 4642 4.460948 AATGCAAACAAGGATAAGGCAG 57.539 40.909 0.00 0.00 32.84 4.85
4438 4648 3.755905 TCGCTGAAATGCAAACAAGGATA 59.244 39.130 0.00 0.00 0.00 2.59
4583 4799 3.028130 TCAACAGACCCCTTTGGAAAAC 58.972 45.455 0.00 0.00 38.00 2.43
4596 4812 3.941483 CCCCACAGATAACATCAACAGAC 59.059 47.826 0.00 0.00 0.00 3.51
4629 4845 3.084039 GTTCAATCCACTGATGCCTTGA 58.916 45.455 0.00 0.00 0.00 3.02
4921 5137 1.880027 CCCAGAAAAGAGACAAACCCG 59.120 52.381 0.00 0.00 0.00 5.28
4986 5202 2.369394 GGAGAACCTACATTGCCAAGG 58.631 52.381 0.00 0.00 36.42 3.61
5148 5365 3.788797 GCTGAGGACAGAACAACGTTTTG 60.789 47.826 0.00 0.00 46.03 2.44
5340 5566 4.941873 GGTTGATAGTTTGGAACCTGTAGG 59.058 45.833 0.00 0.00 35.86 3.18
5492 5727 5.928264 GCAAAGACAGAAGGCATAACAAATT 59.072 36.000 0.00 0.00 0.00 1.82
5544 5779 3.131046 GCCACCCAGATTATTGGAAACAG 59.869 47.826 0.00 0.00 44.54 3.16
5645 5888 6.980051 TCAGATGAATGACAGAACAGAATG 57.020 37.500 0.00 0.00 46.00 2.67
5662 5906 6.172136 AGTAATCCTCCATGTCTTCAGATG 57.828 41.667 0.00 0.00 0.00 2.90
5995 6243 2.926200 CAGCTGATGAAACTACTCCACG 59.074 50.000 8.42 0.00 0.00 4.94
6117 6365 8.216423 ACAAATAATACAGAAGGATCATCAGCT 58.784 33.333 0.00 0.00 0.00 4.24
6221 6472 1.734477 CTCGGCTCTGGTGACAACG 60.734 63.158 0.00 0.00 42.06 4.10
6251 6502 8.860088 AGACCAGAAATTTGTTAATTGCTTACT 58.140 29.630 0.00 0.00 37.50 2.24
6404 6657 6.374417 AAGAGCCTGTAATAGTCTGGAAAA 57.626 37.500 0.00 0.00 0.00 2.29
6468 6721 4.193865 CAATGCACTACTGGATGATGTCA 58.806 43.478 0.00 0.00 0.00 3.58
6494 6747 8.488651 AAACCATACAGTTATAGTTCCTTTCG 57.511 34.615 0.00 0.00 0.00 3.46
6506 6759 5.493809 GGCCTTACAGAAACCATACAGTTA 58.506 41.667 0.00 0.00 0.00 2.24
6530 6783 2.364002 GGTCCAGAGATTCAGAGCTACC 59.636 54.545 0.00 0.00 0.00 3.18
6588 6841 8.849168 CCAACCTGAATATATCTGCATAAAACA 58.151 33.333 0.00 0.00 0.00 2.83
6783 7036 7.552687 CCACAAGTCAAATAACTATTCTGCCTA 59.447 37.037 0.00 0.00 0.00 3.93
6804 7057 6.489603 AGTATATGACCCAAATCAACCACAA 58.510 36.000 0.00 0.00 30.82 3.33
6807 7060 5.359576 GCAAGTATATGACCCAAATCAACCA 59.640 40.000 0.00 0.00 30.82 3.67
6808 7061 5.505654 CGCAAGTATATGACCCAAATCAACC 60.506 44.000 0.00 0.00 30.82 3.77
6851 7104 6.153340 ACCACTCAGTTTTCCATGATAAATGG 59.847 38.462 0.00 0.00 40.48 3.16
6912 7165 4.021192 AGGCACACAATGGGAAAATAACTG 60.021 41.667 0.00 0.00 0.00 3.16
7068 7356 1.813102 AGAGGCAAGGGGGATTCTAG 58.187 55.000 0.00 0.00 0.00 2.43
7075 7363 1.150081 CTGCATAGAGGCAAGGGGG 59.850 63.158 0.00 0.00 44.40 5.40
7235 7562 6.887368 TGTTTCAATGTTGTTGAGTATCTCG 58.113 36.000 0.00 0.00 34.92 4.04
7266 7593 7.062749 AGAGGACAACTGTTTACATACAGAA 57.937 36.000 10.46 0.00 46.72 3.02
7269 7596 8.372459 ACATAAGAGGACAACTGTTTACATACA 58.628 33.333 0.00 0.00 34.14 2.29
7270 7597 8.773404 ACATAAGAGGACAACTGTTTACATAC 57.227 34.615 0.00 0.00 34.14 2.39
7349 7678 8.995220 GTGGTTACACTGAAATCACAAATAGTA 58.005 33.333 0.00 0.00 44.29 1.82
7388 7717 3.702045 AGAACTAAGCTGTAGCCTAGTGG 59.298 47.826 14.11 0.00 44.84 4.00
7389 7718 4.399618 TGAGAACTAAGCTGTAGCCTAGTG 59.600 45.833 14.11 0.00 44.84 2.74
7390 7719 4.601084 TGAGAACTAAGCTGTAGCCTAGT 58.399 43.478 8.89 8.89 46.83 2.57
7391 7720 4.642885 ACTGAGAACTAAGCTGTAGCCTAG 59.357 45.833 7.74 7.74 43.38 3.02
7392 7721 4.399618 CACTGAGAACTAAGCTGTAGCCTA 59.600 45.833 0.00 0.00 43.38 3.93
7393 7722 3.194542 CACTGAGAACTAAGCTGTAGCCT 59.805 47.826 0.00 0.00 43.38 4.58
7394 7723 3.056465 ACACTGAGAACTAAGCTGTAGCC 60.056 47.826 0.00 0.00 43.38 3.93
7395 7724 4.181309 ACACTGAGAACTAAGCTGTAGC 57.819 45.455 0.00 0.00 42.49 3.58
7396 7725 5.336744 GCTACACTGAGAACTAAGCTGTAG 58.663 45.833 16.01 16.01 34.58 2.74
7397 7726 4.158025 GGCTACACTGAGAACTAAGCTGTA 59.842 45.833 0.00 0.00 0.00 2.74
7398 7727 3.056465 GGCTACACTGAGAACTAAGCTGT 60.056 47.826 0.00 0.00 0.00 4.40
7399 7728 3.516615 GGCTACACTGAGAACTAAGCTG 58.483 50.000 0.00 0.00 0.00 4.24
7400 7729 2.164624 CGGCTACACTGAGAACTAAGCT 59.835 50.000 0.00 0.00 0.00 3.74
7401 7730 2.163815 TCGGCTACACTGAGAACTAAGC 59.836 50.000 0.00 0.00 0.00 3.09
7402 7731 4.436242 TTCGGCTACACTGAGAACTAAG 57.564 45.455 0.00 0.00 34.32 2.18
7403 7732 6.320418 TCATATTCGGCTACACTGAGAACTAA 59.680 38.462 0.00 0.00 34.32 2.24
7404 7733 5.826208 TCATATTCGGCTACACTGAGAACTA 59.174 40.000 0.00 0.00 34.32 2.24
7405 7734 4.645136 TCATATTCGGCTACACTGAGAACT 59.355 41.667 0.00 0.00 34.32 3.01
7406 7735 4.933330 TCATATTCGGCTACACTGAGAAC 58.067 43.478 0.00 0.00 34.32 3.01
7407 7736 5.791336 ATCATATTCGGCTACACTGAGAA 57.209 39.130 0.00 0.00 34.32 2.87
7408 7737 5.791336 AATCATATTCGGCTACACTGAGA 57.209 39.130 0.00 0.00 34.32 3.27
7409 7738 5.985530 TGAAATCATATTCGGCTACACTGAG 59.014 40.000 0.00 0.00 34.32 3.35
7410 7739 5.912892 TGAAATCATATTCGGCTACACTGA 58.087 37.500 0.00 0.00 31.80 3.41
7411 7740 5.985530 TCTGAAATCATATTCGGCTACACTG 59.014 40.000 0.00 0.00 35.96 3.66
7412 7741 6.161855 TCTGAAATCATATTCGGCTACACT 57.838 37.500 0.00 0.00 35.96 3.55
7413 7742 6.480320 ACTTCTGAAATCATATTCGGCTACAC 59.520 38.462 0.00 0.00 35.96 2.90
7414 7743 6.582636 ACTTCTGAAATCATATTCGGCTACA 58.417 36.000 0.00 0.00 35.96 2.74
7415 7744 7.484035 AACTTCTGAAATCATATTCGGCTAC 57.516 36.000 0.00 0.00 35.96 3.58
7416 7745 8.506168 AAAACTTCTGAAATCATATTCGGCTA 57.494 30.769 0.00 0.00 35.96 3.93
7417 7746 7.396540 AAAACTTCTGAAATCATATTCGGCT 57.603 32.000 0.00 0.00 35.96 5.52
7418 7747 7.857885 CCTAAAACTTCTGAAATCATATTCGGC 59.142 37.037 0.00 0.00 35.96 5.54
7419 7748 8.893727 ACCTAAAACTTCTGAAATCATATTCGG 58.106 33.333 0.00 0.00 37.09 4.30
7462 7791 7.834068 TGTTATTCAGAAGTAGCATGAAGAC 57.166 36.000 0.00 0.00 36.47 3.01
7483 7812 2.343101 CCGTCGTGTTGGTATCATGTT 58.657 47.619 0.00 0.00 0.00 2.71
7527 7856 9.571810 GAACAATTTATATTGAGTGAATGTGCA 57.428 29.630 12.19 0.00 43.12 4.57
7554 7897 5.801350 ACATATCACACACACAATACAGC 57.199 39.130 0.00 0.00 0.00 4.40
7562 7905 4.023279 TCAGGCAAAACATATCACACACAC 60.023 41.667 0.00 0.00 0.00 3.82
7615 7958 8.565896 TGTAGGCATGGATCATATAAAATCAC 57.434 34.615 0.00 0.00 0.00 3.06
7634 7977 0.543749 ATCTGCACCTTCCTGTAGGC 59.456 55.000 0.00 0.00 38.99 3.93
7643 7986 6.595716 GTCAGTAGATTTTACATCTGCACCTT 59.404 38.462 0.00 0.00 33.95 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.