Multiple sequence alignment - TraesCS4A01G077100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G077100 chr4A 100.000 5994 0 0 1 5994 75967885 75973878 0.000000e+00 11069.0
1 TraesCS4A01G077100 chr4D 95.127 2401 63 22 2710 5080 394487390 394489766 0.000000e+00 3736.0
2 TraesCS4A01G077100 chr4D 91.407 1478 73 28 1 1444 394484347 394485804 0.000000e+00 1977.0
3 TraesCS4A01G077100 chr4D 89.857 1331 76 15 1437 2712 394485962 394487288 0.000000e+00 1655.0
4 TraesCS4A01G077100 chr4D 88.952 353 22 7 359 696 394481599 394481949 2.580000e-113 420.0
5 TraesCS4A01G077100 chr4D 86.667 375 33 8 1 366 394411812 394412178 3.370000e-107 399.0
6 TraesCS4A01G077100 chr4D 94.931 217 9 1 5079 5293 394489796 394490012 7.440000e-89 339.0
7 TraesCS4A01G077100 chr4D 87.162 296 16 8 5292 5587 394490041 394490314 3.490000e-82 316.0
8 TraesCS4A01G077100 chr4D 90.476 168 6 4 5588 5752 394490373 394490533 4.710000e-51 213.0
9 TraesCS4A01G077100 chr4B 94.517 2298 99 15 2806 5080 484771884 484774177 0.000000e+00 3520.0
10 TraesCS4A01G077100 chr4B 89.610 2050 104 36 674 2647 484769720 484771736 0.000000e+00 2505.0
11 TraesCS4A01G077100 chr4B 85.225 467 40 16 1 466 484768703 484769141 2.550000e-123 453.0
12 TraesCS4A01G077100 chr4B 87.162 296 19 6 5292 5587 484774452 484774728 9.690000e-83 318.0
13 TraesCS4A01G077100 chr4B 92.627 217 14 1 5079 5293 484774207 484774423 1.620000e-80 311.0
14 TraesCS4A01G077100 chr2D 86.235 247 27 6 5753 5994 22505524 22505280 1.660000e-65 261.0
15 TraesCS4A01G077100 chr2D 82.500 240 31 10 5750 5980 3030945 3031182 3.660000e-47 200.0
16 TraesCS4A01G077100 chr3B 84.959 246 27 9 5755 5992 5636297 5636054 2.160000e-59 241.0
17 TraesCS4A01G077100 chr1A 86.449 214 23 5 5751 5960 447736025 447736236 4.670000e-56 230.0
18 TraesCS4A01G077100 chr1A 81.633 245 35 8 5749 5986 544997914 544998155 1.700000e-45 195.0
19 TraesCS4A01G077100 chr1A 81.590 239 37 4 5753 5986 306553529 306553765 2.200000e-44 191.0
20 TraesCS4A01G077100 chr2A 83.750 240 27 7 5753 5986 186284788 186285021 3.640000e-52 217.0
21 TraesCS4A01G077100 chr2A 92.727 55 2 2 2717 2771 523453008 523453060 1.790000e-10 78.7
22 TraesCS4A01G077100 chr7A 82.329 249 40 2 5750 5994 620532122 620532370 4.710000e-51 213.0
23 TraesCS4A01G077100 chr6A 82.083 240 31 10 5753 5983 69928550 69928314 1.700000e-45 195.0
24 TraesCS4A01G077100 chr1D 86.517 89 8 2 2719 2804 244394582 244394669 1.780000e-15 95.3
25 TraesCS4A01G077100 chrUn 95.000 60 2 1 2716 2775 21634154 21634212 6.400000e-15 93.5
26 TraesCS4A01G077100 chr6D 93.103 58 3 1 2718 2775 354356119 354356175 3.850000e-12 84.2
27 TraesCS4A01G077100 chr6D 95.652 46 1 1 2715 2760 100540174 100540218 8.330000e-09 73.1
28 TraesCS4A01G077100 chr5B 96.154 52 0 2 2717 2768 548607119 548607168 3.850000e-12 84.2
29 TraesCS4A01G077100 chr7B 92.982 57 3 1 2719 2775 149444945 149445000 1.380000e-11 82.4
30 TraesCS4A01G077100 chr5D 91.525 59 5 0 5292 5350 123500136 123500078 1.380000e-11 82.4
31 TraesCS4A01G077100 chr5A 90.000 60 5 1 2716 2775 11090979 11091037 6.440000e-10 76.8
32 TraesCS4A01G077100 chr2B 94.286 35 2 0 4123 4157 660695743 660695777 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G077100 chr4A 75967885 75973878 5993 False 11069.000000 11069 100.000000 1 5994 1 chr4A.!!$F1 5993
1 TraesCS4A01G077100 chr4D 394481599 394490533 8934 False 1236.571429 3736 91.130286 1 5752 7 chr4D.!!$F2 5751
2 TraesCS4A01G077100 chr4B 484768703 484774728 6025 False 1421.400000 3520 89.828200 1 5587 5 chr4B.!!$F1 5586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 4070 0.826715 TCAAATCGGCAGAGAGAGGG 59.173 55.000 0.00 0.0 0.00 4.30 F
1617 4962 1.205893 GGTGCTTTGTGGTTGTTTCCA 59.794 47.619 0.00 0.0 34.85 3.53 F
1742 5100 1.234821 CTTTTGCGCCTGTTCTGGTA 58.765 50.000 4.18 0.0 0.00 3.25 F
1745 5103 1.681538 TTGCGCCTGTTCTGGTAAAA 58.318 45.000 4.18 0.0 0.00 1.52 F
2180 5562 1.947456 GACTTGAACCTCGCAACCTTT 59.053 47.619 0.00 0.0 0.00 3.11 F
3838 7330 1.873591 GCTGTTCTCGGTGACATGTTT 59.126 47.619 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2180 5562 0.766674 AGGGGTGTAGGACTGTGCAA 60.767 55.000 1.24 0.0 0.00 4.08 R
3170 6659 3.394606 AGTCAACCTAAAGGAGCCAAAGA 59.605 43.478 2.23 0.0 38.94 2.52 R
3174 6663 5.525484 TCTATAGTCAACCTAAAGGAGCCA 58.475 41.667 2.23 0.0 38.94 4.75 R
3196 6685 5.793026 AGAAAACGAGAGAGCATGAATTC 57.207 39.130 0.00 0.0 0.00 2.17 R
4120 7633 1.584724 ATGGAAATCGACAGGAGGGT 58.415 50.000 0.00 0.0 0.00 4.34 R
5214 8776 0.178967 TTTCCACATTGCAGCCCTCA 60.179 50.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 2796 2.149973 AATGAATGACCCAAGGGAGC 57.850 50.000 13.15 4.01 38.96 4.70
77 2826 6.370994 CCATTTGGCATTTGCATGTTAAGTAA 59.629 34.615 4.74 0.00 44.36 2.24
103 2852 2.095059 GGTTCACATGCATGAGTCAACC 60.095 50.000 32.75 26.72 0.00 3.77
121 2870 1.394266 CCACAAAACCACCAGCTGCT 61.394 55.000 8.66 0.00 0.00 4.24
153 2902 5.364778 AGCATAGAAAACACTACACACACA 58.635 37.500 0.00 0.00 0.00 3.72
284 3033 4.821935 TCTCGGCAGACAGACAGA 57.178 55.556 0.00 0.00 0.00 3.41
298 3047 6.529829 CAGACAGACAGAGTACTAAAGAATGC 59.470 42.308 0.00 0.00 0.00 3.56
325 3074 5.147162 GGAAACTTACAACATCTTCTTGCG 58.853 41.667 0.00 0.00 0.00 4.85
340 3089 5.914635 TCTTCTTGCGAAACAAAAGCTAATG 59.085 36.000 0.00 0.00 37.96 1.90
349 3098 7.619982 GCGAAACAAAAGCTAATGGAAAATGAG 60.620 37.037 3.96 0.00 0.00 2.90
386 3135 6.294899 GCATGCATTGTATCCATGATTTACCT 60.295 38.462 14.21 0.00 38.84 3.08
568 3365 6.575083 ATTCGACTTTCATACAATGTCTCG 57.425 37.500 0.00 0.00 0.00 4.04
570 3371 5.093457 TCGACTTTCATACAATGTCTCGAC 58.907 41.667 0.00 0.00 0.00 4.20
585 3386 2.429250 TCTCGACAGAAACACAAGGTGA 59.571 45.455 2.98 0.00 36.96 4.02
623 3424 6.932960 GCAGTTAGGTTAAGAGGTCTTGTAAA 59.067 38.462 2.32 0.00 37.40 2.01
742 3869 2.508439 TGAGCCGTCGATTTCGCC 60.508 61.111 0.00 0.00 39.60 5.54
846 3973 3.786586 GCAGAGAGCAGCACGCAC 61.787 66.667 0.00 0.00 46.13 5.34
870 3997 2.443016 AGGCGAGTCCTGGGCTAG 60.443 66.667 0.00 1.38 45.54 3.42
936 4069 2.753296 GATCAAATCGGCAGAGAGAGG 58.247 52.381 0.00 0.00 0.00 3.69
937 4070 0.826715 TCAAATCGGCAGAGAGAGGG 59.173 55.000 0.00 0.00 0.00 4.30
1230 4376 2.186076 CTCGTGACCTCGCATTACTTC 58.814 52.381 0.00 0.00 0.00 3.01
1231 4377 1.816835 TCGTGACCTCGCATTACTTCT 59.183 47.619 0.00 0.00 0.00 2.85
1232 4378 2.230508 TCGTGACCTCGCATTACTTCTT 59.769 45.455 0.00 0.00 0.00 2.52
1233 4379 2.599082 CGTGACCTCGCATTACTTCTTC 59.401 50.000 0.00 0.00 0.00 2.87
1310 4462 3.132863 GCATTCTGCTGGCTTTTGG 57.867 52.632 0.00 0.00 40.96 3.28
1350 4502 3.544834 CGTCATGTTAGCAGCATGTTAGC 60.545 47.826 12.59 0.00 42.94 3.09
1395 4548 3.913799 TGGGTTTTCCTATTGGAGTCTCA 59.086 43.478 1.47 0.00 44.24 3.27
1397 4550 4.884164 GGGTTTTCCTATTGGAGTCTCATG 59.116 45.833 1.47 0.00 44.24 3.07
1403 4556 1.686236 ATTGGAGTCTCATGGGGGTT 58.314 50.000 1.47 0.00 0.00 4.11
1407 4560 1.212195 GGAGTCTCATGGGGGTTAACC 59.788 57.143 16.85 16.85 39.11 2.85
1414 4567 2.045634 GGGGGTTAACCGGTGCTC 60.046 66.667 18.39 0.77 41.60 4.26
1460 4778 2.292267 CTTGTGATTCTGGATTCCGGG 58.708 52.381 11.69 0.62 0.00 5.73
1479 4797 3.684788 CGGGATTCCATGGATAATTCGAC 59.315 47.826 17.06 6.53 0.00 4.20
1480 4798 4.651778 GGGATTCCATGGATAATTCGACA 58.348 43.478 17.06 0.00 0.00 4.35
1494 4815 2.900716 TCGACACTTTGGTGATCACA 57.099 45.000 26.47 10.65 45.61 3.58
1496 4817 3.325870 TCGACACTTTGGTGATCACATC 58.674 45.455 26.47 11.33 45.61 3.06
1535 4867 3.569701 CCAATGGAGGCGCTTATTATGTT 59.430 43.478 7.64 0.00 0.00 2.71
1617 4962 1.205893 GGTGCTTTGTGGTTGTTTCCA 59.794 47.619 0.00 0.00 34.85 3.53
1619 4964 3.330267 GTGCTTTGTGGTTGTTTCCAAA 58.670 40.909 0.00 0.00 39.34 3.28
1636 4981 5.275067 TCCAAAGCTTGCAACTTGTAAAT 57.725 34.783 0.00 0.00 0.00 1.40
1637 4982 6.398234 TCCAAAGCTTGCAACTTGTAAATA 57.602 33.333 0.00 0.00 0.00 1.40
1693 5051 3.885297 CCTTTCTCTTTTGTTGCCTCAGA 59.115 43.478 0.00 0.00 0.00 3.27
1726 5084 3.999764 AGATTGGGCCAATATCCCTTT 57.000 42.857 30.78 8.20 44.23 3.11
1729 5087 1.494960 TGGGCCAATATCCCTTTTGC 58.505 50.000 2.13 0.00 44.23 3.68
1733 5091 1.402787 CCAATATCCCTTTTGCGCCT 58.597 50.000 4.18 0.00 0.00 5.52
1742 5100 1.234821 CTTTTGCGCCTGTTCTGGTA 58.765 50.000 4.18 0.00 0.00 3.25
1745 5103 1.681538 TTGCGCCTGTTCTGGTAAAA 58.318 45.000 4.18 0.00 0.00 1.52
1791 5149 8.931385 TTCTTTCTGGAAAAACATTTCTTCAG 57.069 30.769 1.80 2.43 0.00 3.02
1792 5150 7.491682 TCTTTCTGGAAAAACATTTCTTCAGG 58.508 34.615 1.80 0.00 0.00 3.86
1793 5151 5.200368 TCTGGAAAAACATTTCTTCAGGC 57.800 39.130 1.80 0.00 0.00 4.85
1844 5207 4.691216 GCCTCTGTTTACAGTTAACCTGAG 59.309 45.833 9.53 12.12 44.49 3.35
1904 5271 4.751098 TGCTCATTTCATTTTTGTTGCCTC 59.249 37.500 0.00 0.00 0.00 4.70
1915 5282 7.336931 TCATTTTTGTTGCCTCTAATCTCTACC 59.663 37.037 0.00 0.00 0.00 3.18
2037 5404 2.450479 ATCTACAATAGCGGCCGGCC 62.450 60.000 36.69 36.69 45.17 6.13
2121 5503 5.163353 TGGGAAACTGGAAAATTTGGACTTC 60.163 40.000 0.00 0.00 0.00 3.01
2180 5562 1.947456 GACTTGAACCTCGCAACCTTT 59.053 47.619 0.00 0.00 0.00 3.11
2211 5593 2.292828 ACACCCCTGTTCTTGGATTG 57.707 50.000 0.00 0.00 0.00 2.67
2369 5752 7.181569 TGAAACAAATGGGAGAGTTCTTTTT 57.818 32.000 0.00 0.00 0.00 1.94
2392 5775 9.793259 TTTTTACTTCTATGAGTTGTTGGATCT 57.207 29.630 0.00 0.00 0.00 2.75
2417 5800 5.946942 TCCAATCTTAGCTGTCTCAAGAT 57.053 39.130 0.00 0.00 39.99 2.40
2425 5808 6.437477 TCTTAGCTGTCTCAAGATTGTCCTTA 59.563 38.462 0.00 0.00 0.00 2.69
2433 5816 5.960811 TCTCAAGATTGTCCTTATCTGTCCT 59.039 40.000 0.00 0.00 32.82 3.85
2471 5854 7.069331 TGGGACAAAAATAGATGTTGAACAGTT 59.931 33.333 3.74 0.00 31.92 3.16
2514 5897 5.772825 AGTCTGCTAAAAGAACATTGCAA 57.227 34.783 0.00 0.00 0.00 4.08
2520 5903 4.085107 GCTAAAAGAACATTGCAACGTTGG 60.085 41.667 28.33 14.70 0.00 3.77
2615 5998 9.898152 TTTTCCAGATGTTCCAATTTTTACTTT 57.102 25.926 0.00 0.00 0.00 2.66
2687 6070 4.428294 AGTATGCCAAGATGTGTATGCT 57.572 40.909 0.00 0.00 0.00 3.79
2712 6095 4.966168 TGGCTTACTATGGTGGAATCTACA 59.034 41.667 0.00 0.00 0.00 2.74
2713 6096 5.606749 TGGCTTACTATGGTGGAATCTACAT 59.393 40.000 0.00 0.00 0.00 2.29
2888 6377 3.252458 GTGGTATACGGCCCAATCATTTC 59.748 47.826 0.00 0.00 31.17 2.17
3174 6663 9.516546 CCCCTCTGTATTTAGTAAACTTTCTTT 57.483 33.333 0.00 0.00 0.00 2.52
3189 6678 4.584743 ACTTTCTTTGGCTCCTTTAGGTTG 59.415 41.667 0.00 0.00 36.34 3.77
3196 6685 5.871396 TGGCTCCTTTAGGTTGACTATAG 57.129 43.478 0.00 0.00 36.34 1.31
3431 6920 9.523168 TGTTATGGCTACTTTAGGTATGTTTTT 57.477 29.630 0.00 0.00 0.00 1.94
3436 6927 9.005777 TGGCTACTTTAGGTATGTTTTTAAGTG 57.994 33.333 0.00 0.00 0.00 3.16
3455 6946 8.974060 TTAAGTGATGTCCTTGTTTACTTCTT 57.026 30.769 0.00 0.00 0.00 2.52
3769 7261 5.105756 ACCAGAAGAAATGGGCTATTTTTCG 60.106 40.000 10.30 10.85 42.48 3.46
3838 7330 1.873591 GCTGTTCTCGGTGACATGTTT 59.126 47.619 0.00 0.00 0.00 2.83
3959 7451 8.512138 ACTTGCTATACCATTAAAACTTGACAC 58.488 33.333 0.00 0.00 0.00 3.67
4033 7544 5.638234 GGTACAAGAACATCAGTTAGGACAC 59.362 44.000 0.00 0.00 38.30 3.67
4045 7556 7.239763 TCAGTTAGGACACATTGATTGTAGA 57.760 36.000 0.00 0.00 36.57 2.59
4463 7978 3.492482 CCTTTGGGGTGCTTTACTTTGTG 60.492 47.826 0.00 0.00 0.00 3.33
4546 8061 9.343539 GAATATATATTCCCTTCCCTGCAATAC 57.656 37.037 20.53 0.00 36.85 1.89
4610 8139 5.731678 ACCCTGGGTCTTCACTAATTCTAAT 59.268 40.000 14.05 0.00 0.00 1.73
4679 8208 6.770785 AGCATTTGTTGGAAGTAGTAGTTGAA 59.229 34.615 0.00 0.00 0.00 2.69
4683 8212 7.548196 TTGTTGGAAGTAGTAGTTGAAACAG 57.452 36.000 11.71 0.00 0.00 3.16
5002 8531 1.133668 AGCCAGCCTTGATTACCATCC 60.134 52.381 0.00 0.00 0.00 3.51
5033 8562 2.034053 GTGGAAAACGCAAGATGTTGGA 59.966 45.455 4.57 0.00 43.62 3.53
5068 8597 2.100197 TGCAGGATTCGCTACAGTACT 58.900 47.619 0.00 0.00 0.00 2.73
5106 8666 5.532406 TGTTGGCCATCTAAATGAGATAAGC 59.468 40.000 6.09 0.00 43.52 3.09
5135 8697 5.288952 GCGTTGGAGACTATAGACTTGTTTC 59.711 44.000 6.78 0.00 0.00 2.78
5155 8717 3.274393 CGGAGCCCTCTAAATGTCG 57.726 57.895 0.00 0.00 0.00 4.35
5178 8740 7.370383 TCGTGTTTCGAGTAAAAGTAGGTTAT 58.630 34.615 0.00 0.00 44.01 1.89
5212 8774 1.265095 AGCTGTCATTGTTTGTCTGCG 59.735 47.619 0.00 0.00 41.06 5.18
5214 8776 2.095567 GCTGTCATTGTTTGTCTGCGAT 60.096 45.455 0.00 0.00 31.27 4.58
5241 8803 3.395639 CTGCAATGTGGAAATGTTTGCT 58.604 40.909 7.37 0.00 42.34 3.91
5277 8839 3.779759 AGCGATTTTTGTGTGCTCAAAA 58.220 36.364 7.73 7.73 42.85 2.44
5400 8992 4.265073 CTCCAAGGGTTAGTTCTGAATGG 58.735 47.826 0.00 0.00 0.00 3.16
5405 8997 6.215845 CAAGGGTTAGTTCTGAATGGTTTTG 58.784 40.000 0.00 0.00 0.00 2.44
5407 8999 5.897250 AGGGTTAGTTCTGAATGGTTTTGTT 59.103 36.000 0.00 0.00 0.00 2.83
5408 9000 6.382859 AGGGTTAGTTCTGAATGGTTTTGTTT 59.617 34.615 0.00 0.00 0.00 2.83
5409 9001 7.045416 GGGTTAGTTCTGAATGGTTTTGTTTT 58.955 34.615 0.00 0.00 0.00 2.43
5410 9002 7.551262 GGGTTAGTTCTGAATGGTTTTGTTTTT 59.449 33.333 0.00 0.00 0.00 1.94
5411 9003 8.600625 GGTTAGTTCTGAATGGTTTTGTTTTTC 58.399 33.333 0.00 0.00 0.00 2.29
5412 9004 9.366216 GTTAGTTCTGAATGGTTTTGTTTTTCT 57.634 29.630 0.00 0.00 0.00 2.52
5413 9005 9.936759 TTAGTTCTGAATGGTTTTGTTTTTCTT 57.063 25.926 0.00 0.00 0.00 2.52
5414 9006 8.846943 AGTTCTGAATGGTTTTGTTTTTCTTT 57.153 26.923 0.00 0.00 0.00 2.52
5415 9007 9.936759 AGTTCTGAATGGTTTTGTTTTTCTTTA 57.063 25.926 0.00 0.00 0.00 1.85
5431 9023 6.657836 TTTCTTTAACTTAGTATGCCGCTC 57.342 37.500 0.00 0.00 0.00 5.03
5438 9030 5.340439 ACTTAGTATGCCGCTCTTTTACT 57.660 39.130 0.00 0.00 0.00 2.24
5454 9046 7.414762 GCTCTTTTACTTGTGTGGTTTGTTCTA 60.415 37.037 0.00 0.00 0.00 2.10
5456 9048 8.455682 TCTTTTACTTGTGTGGTTTGTTCTAAG 58.544 33.333 0.00 0.00 0.00 2.18
5462 9054 7.812669 ACTTGTGTGGTTTGTTCTAAGAAAAAG 59.187 33.333 0.00 0.00 0.00 2.27
5507 9099 8.932791 CACTATCAACTTCGTTTGTAAATAGGT 58.067 33.333 0.00 0.00 0.00 3.08
5533 9125 7.546667 TCATGTTTTAGACCTTTACGTGGTATC 59.453 37.037 0.00 0.00 38.03 2.24
5542 9134 4.094294 CCTTTACGTGGTATCCAACATGTG 59.906 45.833 0.00 0.00 37.41 3.21
5583 9175 7.826260 TGTTTGTGAAATTTTCCTGAACTTC 57.174 32.000 6.68 0.00 0.00 3.01
5587 9179 7.873719 TGTGAAATTTTCCTGAACTTCTACA 57.126 32.000 6.68 0.00 0.00 2.74
5588 9180 8.287439 TGTGAAATTTTCCTGAACTTCTACAA 57.713 30.769 6.68 0.00 0.00 2.41
5628 9275 6.677781 TTAGCGCTCTATATTTGCAAAGTT 57.322 33.333 16.34 9.68 0.00 2.66
5629 9276 5.567138 AGCGCTCTATATTTGCAAAGTTT 57.433 34.783 18.19 3.42 0.00 2.66
5630 9277 5.335127 AGCGCTCTATATTTGCAAAGTTTG 58.665 37.500 18.19 11.41 0.00 2.93
5631 9278 4.500477 GCGCTCTATATTTGCAAAGTTTGG 59.500 41.667 18.19 6.88 0.00 3.28
5655 9302 7.826744 TGGTTGTACACTTGCTATGAAATCATA 59.173 33.333 0.00 3.29 37.76 2.15
5752 9402 8.408601 GGACAGTAATCTATTCGTTGGTACTTA 58.591 37.037 0.00 0.00 0.00 2.24
5753 9403 9.448294 GACAGTAATCTATTCGTTGGTACTTAG 57.552 37.037 0.00 0.00 0.00 2.18
5754 9404 8.411683 ACAGTAATCTATTCGTTGGTACTTAGG 58.588 37.037 0.00 0.00 0.00 2.69
5755 9405 7.866393 CAGTAATCTATTCGTTGGTACTTAGGG 59.134 40.741 0.00 0.00 0.00 3.53
5756 9406 4.660789 TCTATTCGTTGGTACTTAGGGC 57.339 45.455 0.00 0.00 0.00 5.19
5757 9407 4.025360 TCTATTCGTTGGTACTTAGGGCA 58.975 43.478 0.00 0.00 0.00 5.36
5758 9408 3.926058 ATTCGTTGGTACTTAGGGCAT 57.074 42.857 0.00 0.00 0.00 4.40
5759 9409 2.684001 TCGTTGGTACTTAGGGCATG 57.316 50.000 0.00 0.00 0.00 4.06
5760 9410 1.903860 TCGTTGGTACTTAGGGCATGT 59.096 47.619 0.00 0.00 0.00 3.21
5761 9411 3.098377 TCGTTGGTACTTAGGGCATGTA 58.902 45.455 0.00 0.00 0.00 2.29
5762 9412 3.119029 TCGTTGGTACTTAGGGCATGTAC 60.119 47.826 0.00 0.00 37.16 2.90
5763 9413 3.368635 CGTTGGTACTTAGGGCATGTACA 60.369 47.826 0.00 0.00 38.78 2.90
5764 9414 4.581868 GTTGGTACTTAGGGCATGTACAA 58.418 43.478 0.00 0.00 38.78 2.41
5765 9415 5.190677 GTTGGTACTTAGGGCATGTACAAT 58.809 41.667 0.00 0.00 38.78 2.71
5766 9416 4.776349 TGGTACTTAGGGCATGTACAATG 58.224 43.478 0.00 0.12 38.78 2.82
5767 9417 4.134563 GGTACTTAGGGCATGTACAATGG 58.865 47.826 0.00 0.00 38.78 3.16
5768 9418 4.384868 GGTACTTAGGGCATGTACAATGGT 60.385 45.833 0.00 0.00 38.78 3.55
5769 9419 3.620488 ACTTAGGGCATGTACAATGGTG 58.380 45.455 0.00 0.00 0.00 4.17
5770 9420 3.265737 ACTTAGGGCATGTACAATGGTGA 59.734 43.478 0.00 0.00 0.00 4.02
5771 9421 2.128771 AGGGCATGTACAATGGTGAC 57.871 50.000 0.00 0.00 0.00 3.67
5772 9422 9.889272 GTACTTAGGGCATGTACAATGGTGACA 62.889 44.444 0.00 0.00 39.73 3.58
5787 9437 4.450976 TGGTGACATATGGATACAGTTGC 58.549 43.478 7.80 0.00 45.03 4.17
5788 9438 4.685848 TGGTGACATATGGATACAGTTGCC 60.686 45.833 7.80 1.11 45.03 4.52
5789 9439 6.870330 TGGTGACATATGGATACAGTTGCCT 61.870 44.000 7.80 0.00 45.03 4.75
5790 9440 8.588282 TGGTGACATATGGATACAGTTGCCTC 62.588 46.154 7.80 0.00 45.03 4.70
5795 9445 3.266510 TGGATACAGTTGCCTCATGAC 57.733 47.619 0.00 0.00 46.17 3.06
5796 9446 2.571202 TGGATACAGTTGCCTCATGACA 59.429 45.455 0.00 0.00 46.17 3.58
5797 9447 3.008923 TGGATACAGTTGCCTCATGACAA 59.991 43.478 0.00 0.00 46.17 3.18
5798 9448 4.009675 GGATACAGTTGCCTCATGACAAA 58.990 43.478 0.65 0.00 0.00 2.83
5799 9449 4.458989 GGATACAGTTGCCTCATGACAAAA 59.541 41.667 0.65 0.00 0.00 2.44
5800 9450 5.048083 GGATACAGTTGCCTCATGACAAAAA 60.048 40.000 0.65 0.00 0.00 1.94
5801 9451 4.311816 ACAGTTGCCTCATGACAAAAAG 57.688 40.909 0.65 0.00 0.00 2.27
5802 9452 3.701040 ACAGTTGCCTCATGACAAAAAGT 59.299 39.130 0.65 0.00 0.00 2.66
5803 9453 4.887071 ACAGTTGCCTCATGACAAAAAGTA 59.113 37.500 0.65 0.00 0.00 2.24
5804 9454 5.009010 ACAGTTGCCTCATGACAAAAAGTAG 59.991 40.000 0.65 0.00 0.00 2.57
5805 9455 5.009010 CAGTTGCCTCATGACAAAAAGTAGT 59.991 40.000 0.65 0.00 0.00 2.73
5806 9456 5.594317 AGTTGCCTCATGACAAAAAGTAGTT 59.406 36.000 0.65 0.00 0.00 2.24
5807 9457 6.096846 AGTTGCCTCATGACAAAAAGTAGTTT 59.903 34.615 0.65 0.00 0.00 2.66
5808 9458 5.830912 TGCCTCATGACAAAAAGTAGTTTG 58.169 37.500 0.00 0.00 42.93 2.93
5809 9459 5.592282 TGCCTCATGACAAAAAGTAGTTTGA 59.408 36.000 4.76 0.00 40.29 2.69
5810 9460 6.145535 GCCTCATGACAAAAAGTAGTTTGAG 58.854 40.000 4.76 0.00 40.29 3.02
5811 9461 6.017109 GCCTCATGACAAAAAGTAGTTTGAGA 60.017 38.462 4.76 0.00 40.29 3.27
5812 9462 7.355778 CCTCATGACAAAAAGTAGTTTGAGAC 58.644 38.462 4.76 0.95 40.29 3.36
5813 9463 7.012327 CCTCATGACAAAAAGTAGTTTGAGACA 59.988 37.037 4.76 5.48 40.29 3.41
5814 9464 8.450578 TCATGACAAAAAGTAGTTTGAGACAT 57.549 30.769 4.76 2.48 40.29 3.06
5815 9465 8.559536 TCATGACAAAAAGTAGTTTGAGACATC 58.440 33.333 4.76 0.00 40.29 3.06
5816 9466 8.562892 CATGACAAAAAGTAGTTTGAGACATCT 58.437 33.333 4.76 0.00 40.29 2.90
5817 9467 9.778741 ATGACAAAAAGTAGTTTGAGACATCTA 57.221 29.630 4.76 0.00 40.29 1.98
5818 9468 9.778741 TGACAAAAAGTAGTTTGAGACATCTAT 57.221 29.630 4.76 0.00 40.29 1.98
5840 9490 9.199645 TCTATATTGATTTTTCTTCCCAATGCA 57.800 29.630 0.00 0.00 0.00 3.96
5841 9491 9.820725 CTATATTGATTTTTCTTCCCAATGCAA 57.179 29.630 0.00 0.00 0.00 4.08
5842 9492 8.726870 ATATTGATTTTTCTTCCCAATGCAAG 57.273 30.769 0.00 0.00 0.00 4.01
5843 9493 4.317488 TGATTTTTCTTCCCAATGCAAGC 58.683 39.130 0.00 0.00 0.00 4.01
5844 9494 4.040706 TGATTTTTCTTCCCAATGCAAGCT 59.959 37.500 0.00 0.00 0.00 3.74
5845 9495 5.245751 TGATTTTTCTTCCCAATGCAAGCTA 59.754 36.000 0.00 0.00 0.00 3.32
5846 9496 4.519540 TTTTCTTCCCAATGCAAGCTAC 57.480 40.909 0.00 0.00 0.00 3.58
5847 9497 3.439857 TTCTTCCCAATGCAAGCTACT 57.560 42.857 0.00 0.00 0.00 2.57
5848 9498 2.715046 TCTTCCCAATGCAAGCTACTG 58.285 47.619 0.00 0.00 0.00 2.74
5849 9499 1.133790 CTTCCCAATGCAAGCTACTGC 59.866 52.381 3.32 3.32 42.95 4.40
5859 9509 3.393360 GCTACTGCTGGTGGGTCT 58.607 61.111 0.00 0.00 36.03 3.85
5860 9510 1.219393 GCTACTGCTGGTGGGTCTC 59.781 63.158 0.00 0.00 36.03 3.36
5861 9511 1.544825 GCTACTGCTGGTGGGTCTCA 61.545 60.000 0.00 0.00 36.03 3.27
5862 9512 0.976641 CTACTGCTGGTGGGTCTCAA 59.023 55.000 0.00 0.00 0.00 3.02
5863 9513 1.347707 CTACTGCTGGTGGGTCTCAAA 59.652 52.381 0.00 0.00 0.00 2.69
5864 9514 0.109342 ACTGCTGGTGGGTCTCAAAG 59.891 55.000 0.00 0.00 0.00 2.77
5865 9515 0.397941 CTGCTGGTGGGTCTCAAAGA 59.602 55.000 0.00 0.00 0.00 2.52
5866 9516 0.843309 TGCTGGTGGGTCTCAAAGAA 59.157 50.000 0.00 0.00 0.00 2.52
5867 9517 1.239347 GCTGGTGGGTCTCAAAGAAC 58.761 55.000 0.00 0.00 0.00 3.01
5868 9518 1.476833 GCTGGTGGGTCTCAAAGAACA 60.477 52.381 0.00 0.00 32.29 3.18
5869 9519 2.498167 CTGGTGGGTCTCAAAGAACAG 58.502 52.381 0.00 0.00 32.29 3.16
5870 9520 2.104792 CTGGTGGGTCTCAAAGAACAGA 59.895 50.000 0.00 0.00 32.29 3.41
5871 9521 2.507886 TGGTGGGTCTCAAAGAACAGAA 59.492 45.455 0.00 0.00 32.29 3.02
5872 9522 3.053991 TGGTGGGTCTCAAAGAACAGAAA 60.054 43.478 0.00 0.00 32.29 2.52
5873 9523 3.565902 GGTGGGTCTCAAAGAACAGAAAG 59.434 47.826 0.00 0.00 32.29 2.62
5874 9524 4.200092 GTGGGTCTCAAAGAACAGAAAGT 58.800 43.478 0.00 0.00 32.29 2.66
5875 9525 4.035675 GTGGGTCTCAAAGAACAGAAAGTG 59.964 45.833 0.00 0.00 32.29 3.16
5876 9526 4.080582 TGGGTCTCAAAGAACAGAAAGTGA 60.081 41.667 0.00 0.00 32.29 3.41
5877 9527 4.273724 GGGTCTCAAAGAACAGAAAGTGAC 59.726 45.833 0.00 0.00 32.29 3.67
5878 9528 5.119694 GGTCTCAAAGAACAGAAAGTGACT 58.880 41.667 0.00 0.00 30.64 3.41
5879 9529 5.235401 GGTCTCAAAGAACAGAAAGTGACTC 59.765 44.000 0.00 0.00 30.64 3.36
5880 9530 6.045955 GTCTCAAAGAACAGAAAGTGACTCT 58.954 40.000 0.00 0.00 0.00 3.24
5881 9531 6.200097 GTCTCAAAGAACAGAAAGTGACTCTC 59.800 42.308 0.00 0.00 0.00 3.20
5882 9532 5.977635 TCAAAGAACAGAAAGTGACTCTCA 58.022 37.500 0.00 0.00 0.00 3.27
5896 9546 5.583495 GTGACTCTCACTACACATGTATCC 58.417 45.833 0.00 0.00 43.73 2.59
5897 9547 4.645136 TGACTCTCACTACACATGTATCCC 59.355 45.833 0.00 0.00 0.00 3.85
5898 9548 4.873010 ACTCTCACTACACATGTATCCCT 58.127 43.478 0.00 0.00 0.00 4.20
5899 9549 6.014771 ACTCTCACTACACATGTATCCCTA 57.985 41.667 0.00 0.00 0.00 3.53
5900 9550 5.828859 ACTCTCACTACACATGTATCCCTAC 59.171 44.000 0.00 0.00 0.00 3.18
5901 9551 6.014771 TCTCACTACACATGTATCCCTACT 57.985 41.667 0.00 0.00 0.00 2.57
5902 9552 6.062749 TCTCACTACACATGTATCCCTACTC 58.937 44.000 0.00 0.00 0.00 2.59
5903 9553 6.014771 TCACTACACATGTATCCCTACTCT 57.985 41.667 0.00 0.00 0.00 3.24
5904 9554 6.062749 TCACTACACATGTATCCCTACTCTC 58.937 44.000 0.00 0.00 0.00 3.20
5905 9555 5.241949 CACTACACATGTATCCCTACTCTCC 59.758 48.000 0.00 0.00 0.00 3.71
5906 9556 4.265856 ACACATGTATCCCTACTCTCCA 57.734 45.455 0.00 0.00 0.00 3.86
5907 9557 3.961408 ACACATGTATCCCTACTCTCCAC 59.039 47.826 0.00 0.00 0.00 4.02
5908 9558 4.219115 CACATGTATCCCTACTCTCCACT 58.781 47.826 0.00 0.00 0.00 4.00
5909 9559 4.651503 CACATGTATCCCTACTCTCCACTT 59.348 45.833 0.00 0.00 0.00 3.16
5910 9560 4.896482 ACATGTATCCCTACTCTCCACTTC 59.104 45.833 0.00 0.00 0.00 3.01
5911 9561 4.603094 TGTATCCCTACTCTCCACTTCA 57.397 45.455 0.00 0.00 0.00 3.02
5912 9562 4.942944 TGTATCCCTACTCTCCACTTCAA 58.057 43.478 0.00 0.00 0.00 2.69
5913 9563 4.710375 TGTATCCCTACTCTCCACTTCAAC 59.290 45.833 0.00 0.00 0.00 3.18
5914 9564 3.544698 TCCCTACTCTCCACTTCAACT 57.455 47.619 0.00 0.00 0.00 3.16
5915 9565 3.858135 TCCCTACTCTCCACTTCAACTT 58.142 45.455 0.00 0.00 0.00 2.66
5916 9566 4.232091 TCCCTACTCTCCACTTCAACTTT 58.768 43.478 0.00 0.00 0.00 2.66
5917 9567 4.658901 TCCCTACTCTCCACTTCAACTTTT 59.341 41.667 0.00 0.00 0.00 2.27
5918 9568 4.998033 CCCTACTCTCCACTTCAACTTTTC 59.002 45.833 0.00 0.00 0.00 2.29
5919 9569 4.998033 CCTACTCTCCACTTCAACTTTTCC 59.002 45.833 0.00 0.00 0.00 3.13
5920 9570 4.503714 ACTCTCCACTTCAACTTTTCCA 57.496 40.909 0.00 0.00 0.00 3.53
5921 9571 4.855340 ACTCTCCACTTCAACTTTTCCAA 58.145 39.130 0.00 0.00 0.00 3.53
5922 9572 4.640647 ACTCTCCACTTCAACTTTTCCAAC 59.359 41.667 0.00 0.00 0.00 3.77
5923 9573 4.855340 TCTCCACTTCAACTTTTCCAACT 58.145 39.130 0.00 0.00 0.00 3.16
5924 9574 5.261216 TCTCCACTTCAACTTTTCCAACTT 58.739 37.500 0.00 0.00 0.00 2.66
5925 9575 5.714806 TCTCCACTTCAACTTTTCCAACTTT 59.285 36.000 0.00 0.00 0.00 2.66
5926 9576 6.887545 TCTCCACTTCAACTTTTCCAACTTTA 59.112 34.615 0.00 0.00 0.00 1.85
5927 9577 7.559897 TCTCCACTTCAACTTTTCCAACTTTAT 59.440 33.333 0.00 0.00 0.00 1.40
5928 9578 7.488322 TCCACTTCAACTTTTCCAACTTTATG 58.512 34.615 0.00 0.00 0.00 1.90
5929 9579 6.200854 CCACTTCAACTTTTCCAACTTTATGC 59.799 38.462 0.00 0.00 0.00 3.14
5930 9580 6.756074 CACTTCAACTTTTCCAACTTTATGCA 59.244 34.615 0.00 0.00 0.00 3.96
5931 9581 7.277539 CACTTCAACTTTTCCAACTTTATGCAA 59.722 33.333 0.00 0.00 0.00 4.08
5932 9582 7.277760 ACTTCAACTTTTCCAACTTTATGCAAC 59.722 33.333 0.00 0.00 0.00 4.17
5933 9583 6.634805 TCAACTTTTCCAACTTTATGCAACA 58.365 32.000 0.00 0.00 0.00 3.33
5934 9584 7.099764 TCAACTTTTCCAACTTTATGCAACAA 58.900 30.769 0.00 0.00 0.00 2.83
5935 9585 7.604164 TCAACTTTTCCAACTTTATGCAACAAA 59.396 29.630 0.00 0.00 0.00 2.83
5936 9586 7.302350 ACTTTTCCAACTTTATGCAACAAAC 57.698 32.000 0.00 0.00 0.00 2.93
5937 9587 6.315144 ACTTTTCCAACTTTATGCAACAAACC 59.685 34.615 0.00 0.00 0.00 3.27
5938 9588 5.344743 TTCCAACTTTATGCAACAAACCA 57.655 34.783 0.00 0.00 0.00 3.67
5939 9589 5.543507 TCCAACTTTATGCAACAAACCAT 57.456 34.783 0.00 0.00 0.00 3.55
5940 9590 6.656632 TCCAACTTTATGCAACAAACCATA 57.343 33.333 0.00 0.00 0.00 2.74
5941 9591 7.238486 TCCAACTTTATGCAACAAACCATAT 57.762 32.000 0.00 0.00 0.00 1.78
5942 9592 7.675062 TCCAACTTTATGCAACAAACCATATT 58.325 30.769 0.00 0.00 0.00 1.28
5943 9593 8.153550 TCCAACTTTATGCAACAAACCATATTT 58.846 29.630 0.00 0.00 0.00 1.40
5944 9594 8.782144 CCAACTTTATGCAACAAACCATATTTT 58.218 29.630 0.00 0.00 0.00 1.82
5962 9612 1.039856 TTTTTCCTCCAAGCACCTGC 58.960 50.000 0.00 0.00 42.49 4.85
5963 9613 0.827507 TTTTCCTCCAAGCACCTGCC 60.828 55.000 0.00 0.00 43.38 4.85
5964 9614 1.719063 TTTCCTCCAAGCACCTGCCT 61.719 55.000 0.00 0.00 43.38 4.75
5965 9615 2.045536 CCTCCAAGCACCTGCCTC 60.046 66.667 0.00 0.00 43.38 4.70
5966 9616 2.045536 CTCCAAGCACCTGCCTCC 60.046 66.667 0.00 0.00 43.38 4.30
5967 9617 2.530151 TCCAAGCACCTGCCTCCT 60.530 61.111 0.00 0.00 43.38 3.69
5968 9618 2.360852 CCAAGCACCTGCCTCCTG 60.361 66.667 0.00 0.00 43.38 3.86
5969 9619 3.060615 CAAGCACCTGCCTCCTGC 61.061 66.667 0.00 0.00 43.38 4.85
5978 9628 4.249513 GCCTCCTGCAAAGGATCC 57.750 61.111 17.05 2.48 40.77 3.36
5979 9629 1.454663 GCCTCCTGCAAAGGATCCC 60.455 63.158 17.05 0.00 40.77 3.85
5980 9630 1.153086 CCTCCTGCAAAGGATCCCG 60.153 63.158 8.55 0.00 37.34 5.14
5981 9631 1.821332 CTCCTGCAAAGGATCCCGC 60.821 63.158 8.55 9.85 37.34 6.13
5982 9632 2.262774 CTCCTGCAAAGGATCCCGCT 62.263 60.000 8.55 0.00 37.34 5.52
5983 9633 1.379044 CCTGCAAAGGATCCCGCTT 60.379 57.895 8.55 0.00 0.00 4.68
5984 9634 1.379642 CCTGCAAAGGATCCCGCTTC 61.380 60.000 8.55 0.00 0.00 3.86
5985 9635 1.378514 TGCAAAGGATCCCGCTTCC 60.379 57.895 8.55 0.00 0.00 3.46
5986 9636 1.077429 GCAAAGGATCCCGCTTCCT 60.077 57.895 8.55 0.00 45.70 3.36
5987 9637 1.098129 GCAAAGGATCCCGCTTCCTC 61.098 60.000 8.55 0.00 42.90 3.71
5988 9638 0.811616 CAAAGGATCCCGCTTCCTCG 60.812 60.000 8.55 0.00 42.90 4.63
5989 9639 1.265454 AAAGGATCCCGCTTCCTCGT 61.265 55.000 8.55 0.00 42.90 4.18
5990 9640 1.677637 AAGGATCCCGCTTCCTCGTC 61.678 60.000 8.55 0.00 42.90 4.20
5991 9641 2.417936 GATCCCGCTTCCTCGTCC 59.582 66.667 0.00 0.00 0.00 4.79
5992 9642 2.363795 ATCCCGCTTCCTCGTCCA 60.364 61.111 0.00 0.00 0.00 4.02
5993 9643 1.956629 GATCCCGCTTCCTCGTCCAA 61.957 60.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 2796 3.316071 TGCAAATGCCAAATGGTGTAG 57.684 42.857 2.46 0.00 41.18 2.74
77 2826 2.011947 CTCATGCATGTGAACCGATGT 58.988 47.619 25.43 0.00 0.00 3.06
103 2852 0.031178 GAGCAGCTGGTGGTTTTGTG 59.969 55.000 25.60 0.00 36.87 3.33
121 2870 8.700973 TGTAGTGTTTTCTATGCTACCATATGA 58.299 33.333 3.65 0.00 33.66 2.15
153 2902 7.609760 TTCGCTTCATTCATACACTTTGTAT 57.390 32.000 0.00 0.00 43.81 2.29
167 2916 4.836125 TTCTTTTGAGCTTCGCTTCATT 57.164 36.364 0.00 0.00 39.88 2.57
208 2957 6.801862 GGTACTTGACATATGTGTGCTTTTTC 59.198 38.462 14.43 0.00 39.09 2.29
281 3030 7.615582 TTCCAATGCATTCTTTAGTACTCTG 57.384 36.000 9.53 0.00 0.00 3.35
282 3031 7.885399 AGTTTCCAATGCATTCTTTAGTACTCT 59.115 33.333 9.53 0.00 0.00 3.24
283 3032 8.045176 AGTTTCCAATGCATTCTTTAGTACTC 57.955 34.615 9.53 0.00 0.00 2.59
284 3033 8.409358 AAGTTTCCAATGCATTCTTTAGTACT 57.591 30.769 9.53 0.00 0.00 2.73
298 3047 7.115378 GCAAGAAGATGTTGTAAGTTTCCAATG 59.885 37.037 0.00 0.00 0.00 2.82
325 3074 8.593492 ACTCATTTTCCATTAGCTTTTGTTTC 57.407 30.769 0.00 0.00 0.00 2.78
340 3089 7.573843 GCATGCTATACCATGTACTCATTTTCC 60.574 40.741 11.37 0.00 43.46 3.13
349 3098 5.947228 ACAATGCATGCTATACCATGTAC 57.053 39.130 20.33 0.00 43.46 2.90
525 3311 6.755141 TCGAATTTATTCCACTCTCGTTTAGG 59.245 38.462 0.00 0.00 33.28 2.69
563 3360 2.540101 CACCTTGTGTTTCTGTCGAGAC 59.460 50.000 0.00 0.00 0.00 3.36
568 3365 5.163663 TGACATTTCACCTTGTGTTTCTGTC 60.164 40.000 0.00 0.00 34.79 3.51
570 3371 5.247507 TGACATTTCACCTTGTGTTTCTG 57.752 39.130 0.00 0.00 34.79 3.02
623 3424 0.105964 TCGGCTAAGAGGGAGCATCT 60.106 55.000 0.00 0.00 41.98 2.90
635 3436 0.174845 CATCGGTCCTGTTCGGCTAA 59.825 55.000 0.00 0.00 0.00 3.09
753 3880 3.541831 CGTGATCGACGCAACGGG 61.542 66.667 8.35 0.00 42.21 5.28
862 3989 4.823732 TGCCCCTCCCTAGCCCAG 62.824 72.222 0.00 0.00 0.00 4.45
863 3990 4.823732 CTGCCCCTCCCTAGCCCA 62.824 72.222 0.00 0.00 0.00 5.36
864 3991 4.499116 TCTGCCCCTCCCTAGCCC 62.499 72.222 0.00 0.00 0.00 5.19
865 3992 3.164977 GTCTGCCCCTCCCTAGCC 61.165 72.222 0.00 0.00 0.00 3.93
867 3994 1.830408 CTCGTCTGCCCCTCCCTAG 60.830 68.421 0.00 0.00 0.00 3.02
868 3995 2.279073 CTCGTCTGCCCCTCCCTA 59.721 66.667 0.00 0.00 0.00 3.53
869 3996 3.673597 TCTCGTCTGCCCCTCCCT 61.674 66.667 0.00 0.00 0.00 4.20
870 3997 3.462678 GTCTCGTCTGCCCCTCCC 61.463 72.222 0.00 0.00 0.00 4.30
1066 4207 3.307906 CGACCCCACCGAGTTCCA 61.308 66.667 0.00 0.00 0.00 3.53
1067 4208 2.356780 ATCGACCCCACCGAGTTCC 61.357 63.158 0.00 0.00 39.55 3.62
1068 4209 1.153628 CATCGACCCCACCGAGTTC 60.154 63.158 0.00 0.00 39.55 3.01
1149 4290 1.507174 GGAGAAGTCGACGTGGGAG 59.493 63.158 9.23 0.00 0.00 4.30
1208 4354 0.527817 GTAATGCGAGGTCACGAGGG 60.528 60.000 0.00 0.00 35.09 4.30
1213 4359 2.930682 GGAAGAAGTAATGCGAGGTCAC 59.069 50.000 0.00 0.00 0.00 3.67
1230 4376 5.248248 AGAGAAAAGGAAGGAGAGAAGGAAG 59.752 44.000 0.00 0.00 0.00 3.46
1231 4377 5.158889 AGAGAAAAGGAAGGAGAGAAGGAA 58.841 41.667 0.00 0.00 0.00 3.36
1232 4378 4.757692 AGAGAAAAGGAAGGAGAGAAGGA 58.242 43.478 0.00 0.00 0.00 3.36
1233 4379 5.248248 AGAAGAGAAAAGGAAGGAGAGAAGG 59.752 44.000 0.00 0.00 0.00 3.46
1304 4456 0.939106 CGGAAGCCAAACGCCAAAAG 60.939 55.000 0.00 0.00 38.78 2.27
1305 4457 1.066587 CGGAAGCCAAACGCCAAAA 59.933 52.632 0.00 0.00 38.78 2.44
1306 4458 2.065906 GACGGAAGCCAAACGCCAAA 62.066 55.000 0.00 0.00 38.78 3.28
1307 4459 2.517402 ACGGAAGCCAAACGCCAA 60.517 55.556 0.00 0.00 38.78 4.52
1308 4460 2.975799 GACGGAAGCCAAACGCCA 60.976 61.111 0.00 0.00 38.78 5.69
1309 4461 4.084888 CGACGGAAGCCAAACGCC 62.085 66.667 0.00 0.00 38.78 5.68
1310 4462 3.291167 GACGACGGAAGCCAAACGC 62.291 63.158 0.00 0.00 37.98 4.84
1350 4502 3.782443 GTGCCACCTCCCCCGTAG 61.782 72.222 0.00 0.00 0.00 3.51
1382 4535 2.412591 ACCCCCATGAGACTCCAATAG 58.587 52.381 0.00 0.00 0.00 1.73
1384 4537 1.686236 AACCCCCATGAGACTCCAAT 58.314 50.000 0.00 0.00 0.00 3.16
1395 4548 2.206182 GAGCACCGGTTAACCCCCAT 62.206 60.000 19.09 1.46 0.00 4.00
1397 4550 2.045634 GAGCACCGGTTAACCCCC 60.046 66.667 19.09 4.88 0.00 5.40
1403 4556 0.676466 CAGCCAATGAGCACCGGTTA 60.676 55.000 2.97 0.00 34.23 2.85
1407 4560 0.099968 CATTCAGCCAATGAGCACCG 59.900 55.000 0.45 0.00 44.40 4.94
1414 4567 1.066716 CCACCAACCATTCAGCCAATG 60.067 52.381 0.00 0.00 41.64 2.82
1460 4778 6.867662 AAGTGTCGAATTATCCATGGAATC 57.132 37.500 20.67 13.49 0.00 2.52
1488 4809 3.338249 CCATGATAACGGGGATGTGATC 58.662 50.000 0.00 0.00 31.33 2.92
1583 4928 4.452455 ACAAAGCACCGAAACATAGAGAAG 59.548 41.667 0.00 0.00 0.00 2.85
1636 4981 9.121658 TCACCAAATACACAAACATAACTTGTA 57.878 29.630 0.00 0.00 37.68 2.41
1637 4982 7.918562 GTCACCAAATACACAAACATAACTTGT 59.081 33.333 0.00 0.00 41.53 3.16
1693 5051 2.497273 GCCCAATCTTAAACAGCATGGT 59.503 45.455 0.00 0.00 38.54 3.55
1726 5084 1.681538 TTTTACCAGAACAGGCGCAA 58.318 45.000 10.83 0.00 0.00 4.85
1729 5087 2.875933 TGAGTTTTTACCAGAACAGGCG 59.124 45.455 0.00 0.00 0.00 5.52
1733 5091 6.928979 TTCGAATGAGTTTTTACCAGAACA 57.071 33.333 0.00 0.00 0.00 3.18
1787 5145 2.789842 GCATCTGCTCATGCCTGAA 58.210 52.632 8.76 0.00 43.03 3.02
1788 5146 4.553668 GCATCTGCTCATGCCTGA 57.446 55.556 8.76 0.00 43.03 3.86
1793 5151 1.535896 GCCATACTGCATCTGCTCATG 59.464 52.381 3.53 4.45 42.66 3.07
1844 5207 5.389935 GCACAGCTAAAATCACAGTACAGTC 60.390 44.000 0.00 0.00 0.00 3.51
1891 5258 6.316390 CGGTAGAGATTAGAGGCAACAAAAAT 59.684 38.462 0.00 0.00 41.41 1.82
1892 5259 5.642063 CGGTAGAGATTAGAGGCAACAAAAA 59.358 40.000 0.00 0.00 41.41 1.94
1904 5271 2.693591 TGGGCAAGTCGGTAGAGATTAG 59.306 50.000 0.00 0.00 0.00 1.73
1938 5305 3.822940 ACTACTCCGTAAGATCCAGAGG 58.177 50.000 0.00 0.00 43.02 3.69
2180 5562 0.766674 AGGGGTGTAGGACTGTGCAA 60.767 55.000 1.24 0.00 0.00 4.08
2184 5566 1.132817 AGAACAGGGGTGTAGGACTGT 60.133 52.381 0.00 0.00 45.34 3.55
2187 5569 1.003233 CCAAGAACAGGGGTGTAGGAC 59.997 57.143 0.00 0.00 0.00 3.85
2211 5593 1.202580 AGAGGTGCGCATTCAGTATCC 60.203 52.381 15.91 7.44 0.00 2.59
2237 5619 4.329528 TGAAAATTTGCAACACTGTTCTGC 59.670 37.500 0.00 4.34 36.60 4.26
2392 5775 7.423844 TCTTGAGACAGCTAAGATTGGATTA 57.576 36.000 0.00 0.00 0.00 1.75
2417 5800 5.690865 ACAACAAAGGACAGATAAGGACAA 58.309 37.500 0.00 0.00 0.00 3.18
2425 5808 4.342092 CCCAAGAAACAACAAAGGACAGAT 59.658 41.667 0.00 0.00 0.00 2.90
2433 5816 8.314751 TCTATTTTTGTCCCAAGAAACAACAAA 58.685 29.630 0.00 0.00 37.87 2.83
2514 5897 7.812669 GGAACAGAAAATAATGAATTCCAACGT 59.187 33.333 2.27 0.00 35.48 3.99
2687 6070 3.780294 AGATTCCACCATAGTAAGCCACA 59.220 43.478 0.00 0.00 0.00 4.17
2876 6365 8.728833 CATATAGAAAGAGAGAAATGATTGGGC 58.271 37.037 0.00 0.00 0.00 5.36
2937 6426 6.909550 ATAAGCCCAAAAGTTAATCACACA 57.090 33.333 0.00 0.00 0.00 3.72
3170 6659 3.394606 AGTCAACCTAAAGGAGCCAAAGA 59.605 43.478 2.23 0.00 38.94 2.52
3174 6663 5.525484 TCTATAGTCAACCTAAAGGAGCCA 58.475 41.667 2.23 0.00 38.94 4.75
3176 6665 8.204836 TGAATTCTATAGTCAACCTAAAGGAGC 58.795 37.037 7.05 0.00 38.94 4.70
3189 6678 6.908825 ACGAGAGAGCATGAATTCTATAGTC 58.091 40.000 7.05 0.00 0.00 2.59
3196 6685 5.793026 AGAAAACGAGAGAGCATGAATTC 57.207 39.130 0.00 0.00 0.00 2.17
3431 6920 7.990886 ACAAGAAGTAAACAAGGACATCACTTA 59.009 33.333 0.00 0.00 0.00 2.24
3436 6927 8.496751 GTCTAACAAGAAGTAAACAAGGACATC 58.503 37.037 0.00 0.00 0.00 3.06
3769 7261 6.152932 ACCACATCAAAATAATGATCCTGC 57.847 37.500 0.00 0.00 37.96 4.85
4033 7544 5.043903 CGTCCAGTAGGTCTACAATCAATG 58.956 45.833 10.34 0.00 38.48 2.82
4045 7556 1.614241 GGCATCCACGTCCAGTAGGT 61.614 60.000 0.00 0.00 35.89 3.08
4120 7633 1.584724 ATGGAAATCGACAGGAGGGT 58.415 50.000 0.00 0.00 0.00 4.34
4640 8169 5.528043 ACAAATGCTATGGAAAACACACA 57.472 34.783 0.00 0.00 0.00 3.72
4641 8170 5.177327 CCAACAAATGCTATGGAAAACACAC 59.823 40.000 0.00 0.00 34.82 3.82
4679 8208 6.163476 TCTCATTCGTTTATGCAGTACTGTT 58.837 36.000 23.44 14.00 0.00 3.16
4683 8212 6.414079 CACATCTCATTCGTTTATGCAGTAC 58.586 40.000 0.00 0.00 0.00 2.73
4736 8265 9.609346 GTTGGGTACTATTTGTATGTATGAAGT 57.391 33.333 0.00 0.00 33.23 3.01
4765 8294 9.998106 AGTTGTGAAGTTCATACAAGTACTTAT 57.002 29.630 9.18 0.00 36.50 1.73
4906 8435 2.813474 TGAACGAATGCCCGCTCG 60.813 61.111 0.00 0.00 40.87 5.03
5002 8531 2.286713 TGCGTTTTCCACAGTGAATTCG 60.287 45.455 0.62 1.81 0.00 3.34
5033 8562 1.135024 CCTGCACGGCAAGCAAAATAT 60.135 47.619 2.43 0.00 42.17 1.28
5068 8597 1.202510 GCCAACAATGCAAGACACCAA 60.203 47.619 0.00 0.00 0.00 3.67
5106 8666 2.688446 TCTATAGTCTCCAACGCTGGTG 59.312 50.000 4.46 2.32 43.97 4.17
5135 8697 0.876342 GACATTTAGAGGGCTCCGCG 60.876 60.000 0.00 0.00 0.00 6.46
5150 8712 5.632347 CCTACTTTTACTCGAAACACGACAT 59.368 40.000 0.00 0.00 46.45 3.06
5212 8774 0.394762 TCCACATTGCAGCCCTCATC 60.395 55.000 0.00 0.00 0.00 2.92
5214 8776 0.178967 TTTCCACATTGCAGCCCTCA 60.179 50.000 0.00 0.00 0.00 3.86
5241 8803 7.064016 ACAAAAATCGCTTGCTTTCTTTTTGTA 59.936 29.630 17.44 0.00 46.54 2.41
5277 8839 4.315803 CGACCCTAGTTCACAAAACTGAT 58.684 43.478 0.81 0.00 0.00 2.90
5376 8968 2.986050 TCAGAACTAACCCTTGGAGGT 58.014 47.619 0.00 0.00 44.00 3.85
5377 8969 4.265073 CATTCAGAACTAACCCTTGGAGG 58.735 47.826 0.00 0.00 34.30 4.30
5405 8997 7.303261 AGCGGCATACTAAGTTAAAGAAAAAC 58.697 34.615 1.45 0.00 0.00 2.43
5407 8999 6.877322 AGAGCGGCATACTAAGTTAAAGAAAA 59.123 34.615 1.45 0.00 0.00 2.29
5408 9000 6.403878 AGAGCGGCATACTAAGTTAAAGAAA 58.596 36.000 1.45 0.00 0.00 2.52
5409 9001 5.974108 AGAGCGGCATACTAAGTTAAAGAA 58.026 37.500 1.45 0.00 0.00 2.52
5410 9002 5.593679 AGAGCGGCATACTAAGTTAAAGA 57.406 39.130 1.45 0.00 0.00 2.52
5411 9003 6.663944 AAAGAGCGGCATACTAAGTTAAAG 57.336 37.500 1.45 0.00 0.00 1.85
5412 9004 7.820872 AGTAAAAGAGCGGCATACTAAGTTAAA 59.179 33.333 1.45 0.00 0.00 1.52
5413 9005 7.325694 AGTAAAAGAGCGGCATACTAAGTTAA 58.674 34.615 1.45 0.00 0.00 2.01
5414 9006 6.870769 AGTAAAAGAGCGGCATACTAAGTTA 58.129 36.000 1.45 0.00 0.00 2.24
5415 9007 5.731591 AGTAAAAGAGCGGCATACTAAGTT 58.268 37.500 1.45 0.00 0.00 2.66
5416 9008 5.340439 AGTAAAAGAGCGGCATACTAAGT 57.660 39.130 1.45 0.00 0.00 2.24
5417 9009 5.581085 ACAAGTAAAAGAGCGGCATACTAAG 59.419 40.000 1.45 2.78 0.00 2.18
5431 9023 8.455682 TCTTAGAACAAACCACACAAGTAAAAG 58.544 33.333 0.00 0.00 0.00 2.27
5438 9030 7.887381 TCTTTTTCTTAGAACAAACCACACAA 58.113 30.769 0.00 0.00 0.00 3.33
5493 9085 9.537848 GTCTAAAACATGACCTATTTACAAACG 57.462 33.333 0.00 0.00 0.00 3.60
5494 9086 9.836076 GGTCTAAAACATGACCTATTTACAAAC 57.164 33.333 0.00 0.00 46.65 2.93
5507 9099 5.613329 ACCACGTAAAGGTCTAAAACATGA 58.387 37.500 0.00 0.00 32.90 3.07
5526 9118 6.751514 TCATAAACACATGTTGGATACCAC 57.248 37.500 0.00 0.00 38.44 4.16
5613 9260 8.911662 GTGTACAACCAAACTTTGCAAATATAG 58.088 33.333 13.23 3.05 0.00 1.31
5614 9261 8.634444 AGTGTACAACCAAACTTTGCAAATATA 58.366 29.630 13.23 0.00 0.00 0.86
5617 9264 5.729510 AGTGTACAACCAAACTTTGCAAAT 58.270 33.333 13.23 0.00 0.00 2.32
5628 9275 6.488344 TGATTTCATAGCAAGTGTACAACCAA 59.512 34.615 0.00 0.00 0.00 3.67
5629 9276 6.000840 TGATTTCATAGCAAGTGTACAACCA 58.999 36.000 0.00 0.00 0.00 3.67
5630 9277 6.494893 TGATTTCATAGCAAGTGTACAACC 57.505 37.500 0.00 0.00 0.00 3.77
5682 9329 8.618702 TTACCGTCAATAAAAAGTACCAATGA 57.381 30.769 0.00 0.00 0.00 2.57
5731 9381 6.644181 GCCCTAAGTACCAACGAATAGATTAC 59.356 42.308 0.00 0.00 0.00 1.89
5752 9402 1.354031 TGTCACCATTGTACATGCCCT 59.646 47.619 0.00 0.00 0.00 5.19
5753 9403 1.832883 TGTCACCATTGTACATGCCC 58.167 50.000 0.00 0.00 0.00 5.36
5754 9404 4.022935 CCATATGTCACCATTGTACATGCC 60.023 45.833 0.00 0.00 35.54 4.40
5755 9405 4.821260 TCCATATGTCACCATTGTACATGC 59.179 41.667 0.00 0.00 35.54 4.06
5756 9406 7.661027 TGTATCCATATGTCACCATTGTACATG 59.339 37.037 0.00 0.00 35.54 3.21
5757 9407 7.744733 TGTATCCATATGTCACCATTGTACAT 58.255 34.615 0.00 0.00 37.58 2.29
5758 9408 7.130681 TGTATCCATATGTCACCATTGTACA 57.869 36.000 1.24 0.00 32.29 2.90
5759 9409 7.217200 ACTGTATCCATATGTCACCATTGTAC 58.783 38.462 1.24 0.00 32.29 2.90
5760 9410 7.373617 ACTGTATCCATATGTCACCATTGTA 57.626 36.000 1.24 0.00 32.29 2.41
5761 9411 6.252599 ACTGTATCCATATGTCACCATTGT 57.747 37.500 1.24 0.00 32.29 2.71
5762 9412 6.513884 GCAACTGTATCCATATGTCACCATTG 60.514 42.308 1.24 5.22 32.29 2.82
5763 9413 5.532406 GCAACTGTATCCATATGTCACCATT 59.468 40.000 1.24 0.00 32.29 3.16
5764 9414 5.065914 GCAACTGTATCCATATGTCACCAT 58.934 41.667 1.24 0.00 34.97 3.55
5765 9415 4.450976 GCAACTGTATCCATATGTCACCA 58.549 43.478 1.24 0.00 0.00 4.17
5766 9416 3.815401 GGCAACTGTATCCATATGTCACC 59.185 47.826 1.24 0.00 0.00 4.02
5782 9432 7.894934 CAAACTACTTTTTGTCATGAGGCAACT 60.895 37.037 0.00 0.00 39.74 3.16
5783 9433 5.438761 ACTACTTTTTGTCATGAGGCAAC 57.561 39.130 0.00 0.00 0.00 4.17
5784 9434 6.096141 TCAAACTACTTTTTGTCATGAGGCAA 59.904 34.615 0.00 0.00 37.66 4.52
5785 9435 5.592282 TCAAACTACTTTTTGTCATGAGGCA 59.408 36.000 0.00 0.00 37.66 4.75
5786 9436 6.017109 TCTCAAACTACTTTTTGTCATGAGGC 60.017 38.462 0.00 0.00 37.66 4.70
5787 9437 7.012327 TGTCTCAAACTACTTTTTGTCATGAGG 59.988 37.037 0.00 0.00 37.66 3.86
5788 9438 7.919690 TGTCTCAAACTACTTTTTGTCATGAG 58.080 34.615 0.00 0.00 37.66 2.90
5789 9439 7.857734 TGTCTCAAACTACTTTTTGTCATGA 57.142 32.000 0.00 0.00 37.66 3.07
5790 9440 8.562892 AGATGTCTCAAACTACTTTTTGTCATG 58.437 33.333 0.00 0.00 37.66 3.07
5791 9441 8.682936 AGATGTCTCAAACTACTTTTTGTCAT 57.317 30.769 0.00 0.00 37.66 3.06
5792 9442 9.778741 ATAGATGTCTCAAACTACTTTTTGTCA 57.221 29.630 0.00 0.00 37.66 3.58
5814 9464 9.199645 TGCATTGGGAAGAAAAATCAATATAGA 57.800 29.630 0.00 0.00 0.00 1.98
5815 9465 9.820725 TTGCATTGGGAAGAAAAATCAATATAG 57.179 29.630 0.00 0.00 0.00 1.31
5816 9466 9.820725 CTTGCATTGGGAAGAAAAATCAATATA 57.179 29.630 0.00 0.00 44.46 0.86
5817 9467 7.281549 GCTTGCATTGGGAAGAAAAATCAATAT 59.718 33.333 0.00 0.00 44.46 1.28
5818 9468 6.594937 GCTTGCATTGGGAAGAAAAATCAATA 59.405 34.615 0.00 0.00 44.46 1.90
5819 9469 5.413523 GCTTGCATTGGGAAGAAAAATCAAT 59.586 36.000 0.00 0.00 44.46 2.57
5820 9470 4.756135 GCTTGCATTGGGAAGAAAAATCAA 59.244 37.500 0.00 0.00 44.46 2.57
5821 9471 4.040706 AGCTTGCATTGGGAAGAAAAATCA 59.959 37.500 0.00 0.00 44.46 2.57
5822 9472 4.572909 AGCTTGCATTGGGAAGAAAAATC 58.427 39.130 0.00 0.00 44.46 2.17
5823 9473 4.628963 AGCTTGCATTGGGAAGAAAAAT 57.371 36.364 0.00 0.00 44.46 1.82
5824 9474 4.588528 AGTAGCTTGCATTGGGAAGAAAAA 59.411 37.500 0.00 0.00 44.46 1.94
5825 9475 4.022068 CAGTAGCTTGCATTGGGAAGAAAA 60.022 41.667 0.00 0.00 44.46 2.29
5826 9476 3.507233 CAGTAGCTTGCATTGGGAAGAAA 59.493 43.478 0.00 0.00 44.46 2.52
5827 9477 3.084039 CAGTAGCTTGCATTGGGAAGAA 58.916 45.455 0.00 0.00 44.46 2.52
5828 9478 2.715046 CAGTAGCTTGCATTGGGAAGA 58.285 47.619 0.00 0.00 44.46 2.87
5829 9479 1.133790 GCAGTAGCTTGCATTGGGAAG 59.866 52.381 5.50 0.00 44.50 3.46
5830 9480 1.176527 GCAGTAGCTTGCATTGGGAA 58.823 50.000 5.50 0.00 43.53 3.97
5831 9481 2.872408 GCAGTAGCTTGCATTGGGA 58.128 52.632 5.50 0.00 43.53 4.37
5842 9492 1.219393 GAGACCCACCAGCAGTAGC 59.781 63.158 0.00 0.00 42.56 3.58
5843 9493 0.976641 TTGAGACCCACCAGCAGTAG 59.023 55.000 0.00 0.00 0.00 2.57
5844 9494 1.347707 CTTTGAGACCCACCAGCAGTA 59.652 52.381 0.00 0.00 0.00 2.74
5845 9495 0.109342 CTTTGAGACCCACCAGCAGT 59.891 55.000 0.00 0.00 0.00 4.40
5846 9496 0.397941 TCTTTGAGACCCACCAGCAG 59.602 55.000 0.00 0.00 0.00 4.24
5847 9497 0.843309 TTCTTTGAGACCCACCAGCA 59.157 50.000 0.00 0.00 0.00 4.41
5848 9498 1.239347 GTTCTTTGAGACCCACCAGC 58.761 55.000 0.00 0.00 0.00 4.85
5849 9499 2.104792 TCTGTTCTTTGAGACCCACCAG 59.895 50.000 0.00 0.00 0.00 4.00
5850 9500 2.123589 TCTGTTCTTTGAGACCCACCA 58.876 47.619 0.00 0.00 0.00 4.17
5851 9501 2.930826 TCTGTTCTTTGAGACCCACC 57.069 50.000 0.00 0.00 0.00 4.61
5852 9502 4.035675 CACTTTCTGTTCTTTGAGACCCAC 59.964 45.833 0.00 0.00 0.00 4.61
5853 9503 4.080582 TCACTTTCTGTTCTTTGAGACCCA 60.081 41.667 0.00 0.00 0.00 4.51
5854 9504 4.273724 GTCACTTTCTGTTCTTTGAGACCC 59.726 45.833 0.00 0.00 0.00 4.46
5855 9505 5.119694 AGTCACTTTCTGTTCTTTGAGACC 58.880 41.667 0.00 0.00 0.00 3.85
5856 9506 6.045955 AGAGTCACTTTCTGTTCTTTGAGAC 58.954 40.000 0.00 0.00 0.00 3.36
5857 9507 6.127338 TGAGAGTCACTTTCTGTTCTTTGAGA 60.127 38.462 0.00 0.00 0.00 3.27
5858 9508 6.019156 GTGAGAGTCACTTTCTGTTCTTTGAG 60.019 42.308 0.00 0.00 43.73 3.02
5859 9509 5.812642 GTGAGAGTCACTTTCTGTTCTTTGA 59.187 40.000 0.00 0.00 43.73 2.69
5860 9510 6.042144 GTGAGAGTCACTTTCTGTTCTTTG 57.958 41.667 0.00 0.00 43.73 2.77
5873 9523 5.450688 GGGATACATGTGTAGTGAGAGTCAC 60.451 48.000 9.11 0.00 43.35 3.67
5874 9524 4.645136 GGGATACATGTGTAGTGAGAGTCA 59.355 45.833 9.11 0.00 39.74 3.41
5875 9525 4.890581 AGGGATACATGTGTAGTGAGAGTC 59.109 45.833 9.11 0.00 39.74 3.36
5876 9526 4.873010 AGGGATACATGTGTAGTGAGAGT 58.127 43.478 9.11 0.00 39.74 3.24
5877 9527 6.065374 AGTAGGGATACATGTGTAGTGAGAG 58.935 44.000 9.11 0.00 39.74 3.20
5878 9528 6.014771 AGTAGGGATACATGTGTAGTGAGA 57.985 41.667 9.11 0.00 39.74 3.27
5879 9529 6.065374 AGAGTAGGGATACATGTGTAGTGAG 58.935 44.000 9.11 0.00 39.74 3.51
5880 9530 6.014771 AGAGTAGGGATACATGTGTAGTGA 57.985 41.667 9.11 0.00 39.74 3.41
5881 9531 5.241949 GGAGAGTAGGGATACATGTGTAGTG 59.758 48.000 9.11 0.00 39.74 2.74
5882 9532 5.103643 TGGAGAGTAGGGATACATGTGTAGT 60.104 44.000 9.11 0.00 39.74 2.73
5883 9533 5.241949 GTGGAGAGTAGGGATACATGTGTAG 59.758 48.000 9.11 0.00 39.74 2.74
5884 9534 5.103643 AGTGGAGAGTAGGGATACATGTGTA 60.104 44.000 9.11 0.00 39.74 2.90
5885 9535 3.961408 GTGGAGAGTAGGGATACATGTGT 59.039 47.826 9.11 0.10 39.74 3.72
5886 9536 4.219115 AGTGGAGAGTAGGGATACATGTG 58.781 47.826 9.11 0.00 39.74 3.21
5887 9537 4.544564 AGTGGAGAGTAGGGATACATGT 57.455 45.455 2.69 2.69 39.74 3.21
5888 9538 4.895889 TGAAGTGGAGAGTAGGGATACATG 59.104 45.833 0.00 0.00 39.74 3.21
5889 9539 5.144159 TGAAGTGGAGAGTAGGGATACAT 57.856 43.478 0.00 0.00 39.74 2.29
5890 9540 4.603094 TGAAGTGGAGAGTAGGGATACA 57.397 45.455 0.00 0.00 39.74 2.29
5891 9541 4.957327 AGTTGAAGTGGAGAGTAGGGATAC 59.043 45.833 0.00 0.00 0.00 2.24
5892 9542 5.208294 AGTTGAAGTGGAGAGTAGGGATA 57.792 43.478 0.00 0.00 0.00 2.59
5893 9543 4.067944 AGTTGAAGTGGAGAGTAGGGAT 57.932 45.455 0.00 0.00 0.00 3.85
5894 9544 3.544698 AGTTGAAGTGGAGAGTAGGGA 57.455 47.619 0.00 0.00 0.00 4.20
5895 9545 4.625607 AAAGTTGAAGTGGAGAGTAGGG 57.374 45.455 0.00 0.00 0.00 3.53
5896 9546 4.998033 GGAAAAGTTGAAGTGGAGAGTAGG 59.002 45.833 0.00 0.00 0.00 3.18
5897 9547 5.611374 TGGAAAAGTTGAAGTGGAGAGTAG 58.389 41.667 0.00 0.00 0.00 2.57
5898 9548 5.623956 TGGAAAAGTTGAAGTGGAGAGTA 57.376 39.130 0.00 0.00 0.00 2.59
5899 9549 4.503714 TGGAAAAGTTGAAGTGGAGAGT 57.496 40.909 0.00 0.00 0.00 3.24
5900 9550 4.884164 AGTTGGAAAAGTTGAAGTGGAGAG 59.116 41.667 0.00 0.00 0.00 3.20
5901 9551 4.855340 AGTTGGAAAAGTTGAAGTGGAGA 58.145 39.130 0.00 0.00 0.00 3.71
5902 9552 5.582689 AAGTTGGAAAAGTTGAAGTGGAG 57.417 39.130 0.00 0.00 0.00 3.86
5903 9553 5.993748 AAAGTTGGAAAAGTTGAAGTGGA 57.006 34.783 0.00 0.00 0.00 4.02
5904 9554 6.200854 GCATAAAGTTGGAAAAGTTGAAGTGG 59.799 38.462 0.00 0.00 0.00 4.00
5905 9555 6.756074 TGCATAAAGTTGGAAAAGTTGAAGTG 59.244 34.615 0.00 0.00 0.00 3.16
5906 9556 6.872920 TGCATAAAGTTGGAAAAGTTGAAGT 58.127 32.000 0.00 0.00 0.00 3.01
5907 9557 7.277539 TGTTGCATAAAGTTGGAAAAGTTGAAG 59.722 33.333 0.00 0.00 0.00 3.02
5908 9558 7.099764 TGTTGCATAAAGTTGGAAAAGTTGAA 58.900 30.769 0.00 0.00 0.00 2.69
5909 9559 6.634805 TGTTGCATAAAGTTGGAAAAGTTGA 58.365 32.000 0.00 0.00 0.00 3.18
5910 9560 6.900568 TGTTGCATAAAGTTGGAAAAGTTG 57.099 33.333 0.00 0.00 0.00 3.16
5911 9561 7.148323 GGTTTGTTGCATAAAGTTGGAAAAGTT 60.148 33.333 0.00 0.00 0.00 2.66
5912 9562 6.315144 GGTTTGTTGCATAAAGTTGGAAAAGT 59.685 34.615 0.00 0.00 0.00 2.66
5913 9563 6.314896 TGGTTTGTTGCATAAAGTTGGAAAAG 59.685 34.615 0.00 0.00 0.00 2.27
5914 9564 6.173339 TGGTTTGTTGCATAAAGTTGGAAAA 58.827 32.000 0.00 0.00 0.00 2.29
5915 9565 5.734720 TGGTTTGTTGCATAAAGTTGGAAA 58.265 33.333 0.00 0.00 0.00 3.13
5916 9566 5.344743 TGGTTTGTTGCATAAAGTTGGAA 57.655 34.783 0.00 0.00 0.00 3.53
5917 9567 5.543507 ATGGTTTGTTGCATAAAGTTGGA 57.456 34.783 0.00 0.00 0.00 3.53
5918 9568 7.903995 AATATGGTTTGTTGCATAAAGTTGG 57.096 32.000 0.00 0.00 0.00 3.77
5943 9593 1.039856 GCAGGTGCTTGGAGGAAAAA 58.960 50.000 0.00 0.00 38.21 1.94
5944 9594 0.827507 GGCAGGTGCTTGGAGGAAAA 60.828 55.000 1.26 0.00 41.70 2.29
5945 9595 1.228552 GGCAGGTGCTTGGAGGAAA 60.229 57.895 1.26 0.00 41.70 3.13
5946 9596 2.129555 GAGGCAGGTGCTTGGAGGAA 62.130 60.000 1.26 0.00 41.70 3.36
5947 9597 2.530151 AGGCAGGTGCTTGGAGGA 60.530 61.111 1.26 0.00 41.70 3.71
5948 9598 2.045536 GAGGCAGGTGCTTGGAGG 60.046 66.667 1.26 0.00 41.70 4.30
5949 9599 2.045536 GGAGGCAGGTGCTTGGAG 60.046 66.667 1.26 0.00 41.70 3.86
5950 9600 2.530151 AGGAGGCAGGTGCTTGGA 60.530 61.111 1.26 0.00 41.70 3.53
5951 9601 2.360852 CAGGAGGCAGGTGCTTGG 60.361 66.667 1.26 0.00 41.70 3.61
5952 9602 3.060615 GCAGGAGGCAGGTGCTTG 61.061 66.667 1.26 0.00 43.97 4.01
5965 9615 1.379044 AAGCGGGATCCTTTGCAGG 60.379 57.895 20.86 0.00 42.50 4.85
5966 9616 1.379642 GGAAGCGGGATCCTTTGCAG 61.380 60.000 20.86 5.56 33.98 4.41
5967 9617 1.378514 GGAAGCGGGATCCTTTGCA 60.379 57.895 20.86 0.00 33.98 4.08
5968 9618 1.077429 AGGAAGCGGGATCCTTTGC 60.077 57.895 12.58 13.41 45.06 3.68
5973 9623 2.417936 GACGAGGAAGCGGGATCC 59.582 66.667 1.92 1.92 37.22 3.36
5974 9624 1.956629 TTGGACGAGGAAGCGGGATC 61.957 60.000 0.00 0.00 35.12 3.36
5975 9625 1.987855 TTGGACGAGGAAGCGGGAT 60.988 57.895 0.00 0.00 35.12 3.85
5976 9626 2.602267 TTGGACGAGGAAGCGGGA 60.602 61.111 0.00 0.00 35.12 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.