Multiple sequence alignment - TraesCS4A01G075200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G075200 chr4A 100.000 3197 0 0 1 3197 74589937 74586741 0.000000e+00 5904.0
1 TraesCS4A01G075200 chr4A 81.724 1160 97 54 956 2083 74601347 74600271 0.000000e+00 861.0
2 TraesCS4A01G075200 chr4A 90.395 531 28 12 1 513 56275048 56274523 0.000000e+00 676.0
3 TraesCS4A01G075200 chr4A 85.432 659 51 18 1 651 629348728 629348107 0.000000e+00 643.0
4 TraesCS4A01G075200 chr4A 86.447 273 21 5 392 649 56274550 56274279 5.220000e-73 285.0
5 TraesCS4A01G075200 chr3D 88.075 1434 117 30 1500 2925 124498349 124496962 0.000000e+00 1652.0
6 TraesCS4A01G075200 chr3D 87.697 634 57 11 875 1505 124500668 124500053 0.000000e+00 719.0
7 TraesCS4A01G075200 chr3D 93.960 447 22 5 1 444 591372248 591371804 0.000000e+00 671.0
8 TraesCS4A01G075200 chr3D 90.638 235 20 2 2534 2768 589267534 589267766 8.610000e-81 311.0
9 TraesCS4A01G075200 chr3D 91.579 95 8 0 3103 3197 124491814 124491720 7.200000e-27 132.0
10 TraesCS4A01G075200 chr4D 88.444 1073 81 28 875 1937 393154977 393153938 0.000000e+00 1254.0
11 TraesCS4A01G075200 chr4D 84.103 975 81 35 1127 2080 393646152 393647073 0.000000e+00 874.0
12 TraesCS4A01G075200 chr4D 83.742 978 85 35 1127 2083 393248514 393247590 0.000000e+00 857.0
13 TraesCS4A01G075200 chr4D 86.654 547 51 15 2477 3009 393153739 393153201 1.280000e-163 586.0
14 TraesCS4A01G075200 chr4D 90.638 235 20 2 2534 2768 207361793 207362025 8.610000e-81 311.0
15 TraesCS4A01G075200 chr4D 94.444 90 5 0 3103 3192 393153186 393153097 4.300000e-29 139.0
16 TraesCS4A01G075200 chr4D 88.393 112 13 0 3003 3114 323929674 323929563 5.560000e-28 135.0
17 TraesCS4A01G075200 chr4D 80.916 131 13 7 955 1073 393248665 393248535 3.400000e-15 93.5
18 TraesCS4A01G075200 chr4D 80.916 131 13 7 955 1073 393646001 393646131 3.400000e-15 93.5
19 TraesCS4A01G075200 chr4B 87.500 1008 100 12 955 1949 482978988 482977994 0.000000e+00 1140.0
20 TraesCS4A01G075200 chr4B 83.709 976 88 38 1127 2083 482984428 482983505 0.000000e+00 856.0
21 TraesCS4A01G075200 chr4B 83.333 294 30 6 367 643 386029914 386030205 1.470000e-63 254.0
22 TraesCS4A01G075200 chr4B 94.000 50 0 2 1000 1047 482984534 482984486 4.420000e-09 73.1
23 TraesCS4A01G075200 chr3A 96.031 655 23 3 1 652 713568163 713568817 0.000000e+00 1062.0
24 TraesCS4A01G075200 chr3A 90.909 528 31 6 1 513 731023702 731023177 0.000000e+00 693.0
25 TraesCS4A01G075200 chr3A 89.520 229 15 4 646 873 358324765 358324545 6.750000e-72 281.0
26 TraesCS4A01G075200 chr3A 85.294 272 22 7 392 647 731023275 731023006 6.800000e-67 265.0
27 TraesCS4A01G075200 chr5A 95.652 644 18 2 1 643 461907271 461906637 0.000000e+00 1026.0
28 TraesCS4A01G075200 chr5B 81.372 977 108 44 1127 2083 63253888 63252966 0.000000e+00 728.0
29 TraesCS4A01G075200 chr2A 86.617 665 53 18 1 643 180109948 180109298 0.000000e+00 702.0
30 TraesCS4A01G075200 chr2A 89.823 226 10 5 648 873 766416996 766416784 8.730000e-71 278.0
31 TraesCS4A01G075200 chr7B 91.429 420 27 5 1 420 337356233 337355823 4.630000e-158 568.0
32 TraesCS4A01G075200 chr7B 86.792 159 8 7 492 647 337355818 337355670 7.090000e-37 165.0
33 TraesCS4A01G075200 chr1D 93.388 363 18 6 96 456 401658582 401658940 1.690000e-147 532.0
34 TraesCS4A01G075200 chr5D 92.084 379 24 6 1 377 290051529 290051903 2.180000e-146 529.0
35 TraesCS4A01G075200 chr5D 90.948 232 19 2 2537 2768 523035274 523035045 8.610000e-81 311.0
36 TraesCS4A01G075200 chr5D 90.566 106 10 0 3007 3112 205794645 205794750 1.200000e-29 141.0
37 TraesCS4A01G075200 chr5D 88.889 108 12 0 2997 3104 526139166 526139273 2.000000e-27 134.0
38 TraesCS4A01G075200 chr5D 77.660 188 31 9 1291 1474 255989475 255989295 1.570000e-18 104.0
39 TraesCS4A01G075200 chr6A 89.501 381 23 8 122 487 84966615 84966993 1.740000e-127 466.0
40 TraesCS4A01G075200 chrUn 90.638 235 20 2 2534 2768 397078317 397078549 8.610000e-81 311.0
41 TraesCS4A01G075200 chrUn 90.948 232 19 2 2537 2768 455551876 455551647 8.610000e-81 311.0
42 TraesCS4A01G075200 chr6D 90.948 232 19 2 2537 2768 389248359 389248130 8.610000e-81 311.0
43 TraesCS4A01G075200 chr6D 90.948 232 19 2 2537 2768 389253154 389252925 8.610000e-81 311.0
44 TraesCS4A01G075200 chr3B 92.157 102 7 1 3007 3107 423806104 423806205 3.320000e-30 143.0
45 TraesCS4A01G075200 chr3B 89.524 105 11 0 3008 3112 677753419 677753315 2.000000e-27 134.0
46 TraesCS4A01G075200 chr7D 88.034 117 10 4 2989 3104 58788050 58787937 5.560000e-28 135.0
47 TraesCS4A01G075200 chr7D 86.957 115 15 0 3007 3121 563665260 563665374 2.590000e-26 130.0
48 TraesCS4A01G075200 chr2B 89.623 106 11 0 3007 3112 464611080 464611185 5.560000e-28 135.0
49 TraesCS4A01G075200 chr2D 89.091 110 9 3 2998 3105 305909801 305909909 2.000000e-27 134.0
50 TraesCS4A01G075200 chr6B 94.915 59 3 0 597 655 678308916 678308858 3.400000e-15 93.5
51 TraesCS4A01G075200 chr1B 85.333 75 11 0 572 646 505612614 505612540 9.510000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G075200 chr4A 74586741 74589937 3196 True 5904.000000 5904 100.000000 1 3197 1 chr4A.!!$R1 3196
1 TraesCS4A01G075200 chr4A 74600271 74601347 1076 True 861.000000 861 81.724000 956 2083 1 chr4A.!!$R2 1127
2 TraesCS4A01G075200 chr4A 629348107 629348728 621 True 643.000000 643 85.432000 1 651 1 chr4A.!!$R3 650
3 TraesCS4A01G075200 chr4A 56274279 56275048 769 True 480.500000 676 88.421000 1 649 2 chr4A.!!$R4 648
4 TraesCS4A01G075200 chr3D 124496962 124500668 3706 True 1185.500000 1652 87.886000 875 2925 2 chr3D.!!$R3 2050
5 TraesCS4A01G075200 chr4D 393153097 393154977 1880 True 659.666667 1254 89.847333 875 3192 3 chr4D.!!$R2 2317
6 TraesCS4A01G075200 chr4D 393646001 393647073 1072 False 483.750000 874 82.509500 955 2080 2 chr4D.!!$F2 1125
7 TraesCS4A01G075200 chr4D 393247590 393248665 1075 True 475.250000 857 82.329000 955 2083 2 chr4D.!!$R3 1128
8 TraesCS4A01G075200 chr4B 482977994 482978988 994 True 1140.000000 1140 87.500000 955 1949 1 chr4B.!!$R1 994
9 TraesCS4A01G075200 chr4B 482983505 482984534 1029 True 464.550000 856 88.854500 1000 2083 2 chr4B.!!$R2 1083
10 TraesCS4A01G075200 chr3A 713568163 713568817 654 False 1062.000000 1062 96.031000 1 652 1 chr3A.!!$F1 651
11 TraesCS4A01G075200 chr3A 731023006 731023702 696 True 479.000000 693 88.101500 1 647 2 chr3A.!!$R2 646
12 TraesCS4A01G075200 chr5A 461906637 461907271 634 True 1026.000000 1026 95.652000 1 643 1 chr5A.!!$R1 642
13 TraesCS4A01G075200 chr5B 63252966 63253888 922 True 728.000000 728 81.372000 1127 2083 1 chr5B.!!$R1 956
14 TraesCS4A01G075200 chr2A 180109298 180109948 650 True 702.000000 702 86.617000 1 643 1 chr2A.!!$R1 642
15 TraesCS4A01G075200 chr7B 337355670 337356233 563 True 366.500000 568 89.110500 1 647 2 chr7B.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
674 852 0.037975 CGTAGTACAAACTGGGCCGT 60.038 55.0 0.00 0.00 36.36 5.68 F
927 1105 0.039256 TCGGACTCGGTTTAACCACG 60.039 55.0 14.97 9.77 38.47 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 3924 0.179089 CAAGATCCACAGCTCTCCCG 60.179 60.0 0.00 0.0 0.0 5.14 R
2218 4210 0.672401 TTCCGATCGAACAAGGCACC 60.672 55.0 18.66 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 94 5.679734 ATGAGCTTAGTTCACACAAACAG 57.320 39.130 0.00 0.00 0.00 3.16
157 160 0.979187 GGGACCCCAGGTACGAATCA 60.979 60.000 0.00 0.00 37.42 2.57
270 274 3.808218 AAAGCCGAGCCAGCCCAAA 62.808 57.895 0.00 0.00 0.00 3.28
325 329 0.892063 GAGGTTCGACTCCAAGCTCT 59.108 55.000 7.99 0.00 42.59 4.09
334 338 3.530535 GACTCCAAGCTCTCCATCTTTC 58.469 50.000 0.00 0.00 0.00 2.62
577 755 1.643868 GCATGGGACGTTCGATGCAA 61.644 55.000 31.74 0.00 44.58 4.08
643 821 3.378427 GTCGGCAGGAATTTAGCATTCTT 59.622 43.478 0.00 0.00 0.00 2.52
671 849 6.484818 TTTTATTCGTAGTACAAACTGGGC 57.515 37.500 0.38 0.00 36.36 5.36
672 850 2.460757 TTCGTAGTACAAACTGGGCC 57.539 50.000 0.00 0.00 36.36 5.80
673 851 0.244450 TCGTAGTACAAACTGGGCCG 59.756 55.000 0.00 0.00 36.36 6.13
674 852 0.037975 CGTAGTACAAACTGGGCCGT 60.038 55.000 0.00 0.00 36.36 5.68
675 853 1.202114 CGTAGTACAAACTGGGCCGTA 59.798 52.381 0.00 0.00 36.36 4.02
676 854 2.610433 GTAGTACAAACTGGGCCGTAC 58.390 52.381 9.78 9.78 36.36 3.67
677 855 1.345063 AGTACAAACTGGGCCGTACT 58.655 50.000 13.42 13.42 39.69 2.73
678 856 2.528564 AGTACAAACTGGGCCGTACTA 58.471 47.619 16.50 0.00 42.01 1.82
679 857 2.494870 AGTACAAACTGGGCCGTACTAG 59.505 50.000 16.50 3.09 42.01 2.57
680 858 0.611714 ACAAACTGGGCCGTACTAGG 59.388 55.000 0.00 0.00 0.00 3.02
695 873 7.373778 CCGTACTAGGCTTTATTTTCTTTGT 57.626 36.000 0.00 0.00 0.00 2.83
696 874 7.813645 CCGTACTAGGCTTTATTTTCTTTGTT 58.186 34.615 0.00 0.00 0.00 2.83
697 875 8.294577 CCGTACTAGGCTTTATTTTCTTTGTTT 58.705 33.333 0.00 0.00 0.00 2.83
698 876 9.673454 CGTACTAGGCTTTATTTTCTTTGTTTT 57.327 29.630 0.00 0.00 0.00 2.43
715 893 9.932207 TCTTTGTTTTAGTCATAATAAGGACGA 57.068 29.630 0.00 0.00 41.29 4.20
716 894 9.968743 CTTTGTTTTAGTCATAATAAGGACGAC 57.031 33.333 0.00 0.00 41.29 4.34
717 895 8.483307 TTGTTTTAGTCATAATAAGGACGACC 57.517 34.615 0.00 0.00 41.29 4.79
718 896 7.043565 TGTTTTAGTCATAATAAGGACGACCC 58.956 38.462 0.00 0.00 41.29 4.46
719 897 6.795144 TTTAGTCATAATAAGGACGACCCA 57.205 37.500 0.00 0.00 41.29 4.51
720 898 4.939052 AGTCATAATAAGGACGACCCAG 57.061 45.455 0.00 0.00 41.29 4.45
721 899 4.287552 AGTCATAATAAGGACGACCCAGT 58.712 43.478 0.00 0.00 41.29 4.00
722 900 5.452255 AGTCATAATAAGGACGACCCAGTA 58.548 41.667 0.00 0.00 41.29 2.74
723 901 5.301298 AGTCATAATAAGGACGACCCAGTAC 59.699 44.000 0.00 0.00 41.29 2.73
724 902 4.276678 TCATAATAAGGACGACCCAGTACG 59.723 45.833 0.00 0.00 37.41 3.67
725 903 1.396653 ATAAGGACGACCCAGTACGG 58.603 55.000 0.00 0.00 37.41 4.02
726 904 0.327924 TAAGGACGACCCAGTACGGA 59.672 55.000 0.00 0.00 36.56 4.69
727 905 0.540365 AAGGACGACCCAGTACGGAA 60.540 55.000 0.00 0.00 36.56 4.30
728 906 0.964358 AGGACGACCCAGTACGGAAG 60.964 60.000 0.00 0.00 36.56 3.46
729 907 1.153881 GACGACCCAGTACGGAAGC 60.154 63.158 5.46 0.00 36.56 3.86
730 908 1.593296 GACGACCCAGTACGGAAGCT 61.593 60.000 5.46 0.00 36.56 3.74
731 909 0.322816 ACGACCCAGTACGGAAGCTA 60.323 55.000 5.46 0.00 36.56 3.32
732 910 1.030457 CGACCCAGTACGGAAGCTAT 58.970 55.000 5.46 0.00 36.56 2.97
733 911 1.269102 CGACCCAGTACGGAAGCTATG 60.269 57.143 5.46 0.00 36.56 2.23
734 912 0.464452 ACCCAGTACGGAAGCTATGC 59.536 55.000 5.46 0.00 36.56 3.14
735 913 0.753262 CCCAGTACGGAAGCTATGCT 59.247 55.000 5.46 0.00 42.56 3.79
736 914 1.539065 CCCAGTACGGAAGCTATGCTG 60.539 57.143 5.46 0.00 39.62 4.41
737 915 1.539065 CCAGTACGGAAGCTATGCTGG 60.539 57.143 9.04 9.04 39.62 4.85
738 916 0.753262 AGTACGGAAGCTATGCTGGG 59.247 55.000 0.00 0.00 39.62 4.45
739 917 0.464452 GTACGGAAGCTATGCTGGGT 59.536 55.000 0.00 0.00 39.62 4.51
740 918 0.464036 TACGGAAGCTATGCTGGGTG 59.536 55.000 0.00 0.00 39.62 4.61
741 919 1.524621 CGGAAGCTATGCTGGGTGG 60.525 63.158 0.00 0.00 39.62 4.61
742 920 1.152881 GGAAGCTATGCTGGGTGGG 60.153 63.158 0.00 0.00 39.62 4.61
743 921 1.152881 GAAGCTATGCTGGGTGGGG 60.153 63.158 0.00 0.00 39.62 4.96
744 922 2.631012 GAAGCTATGCTGGGTGGGGG 62.631 65.000 0.00 0.00 39.62 5.40
745 923 3.096495 GCTATGCTGGGTGGGGGA 61.096 66.667 0.00 0.00 0.00 4.81
746 924 3.125376 GCTATGCTGGGTGGGGGAG 62.125 68.421 0.00 0.00 0.00 4.30
747 925 2.368192 TATGCTGGGTGGGGGAGG 60.368 66.667 0.00 0.00 0.00 4.30
766 944 4.452733 CGTTCGGGCTGGGAGTCC 62.453 72.222 0.00 0.00 36.39 3.85
767 945 3.003763 GTTCGGGCTGGGAGTCCT 61.004 66.667 9.58 0.00 38.01 3.85
768 946 3.003173 TTCGGGCTGGGAGTCCTG 61.003 66.667 9.58 3.74 38.01 3.86
769 947 3.846405 TTCGGGCTGGGAGTCCTGT 62.846 63.158 9.58 0.00 38.01 4.00
770 948 3.775654 CGGGCTGGGAGTCCTGTC 61.776 72.222 9.58 3.94 38.01 3.51
771 949 2.607750 GGGCTGGGAGTCCTGTCA 60.608 66.667 9.58 0.00 36.93 3.58
772 950 1.997874 GGGCTGGGAGTCCTGTCAT 60.998 63.158 9.58 0.00 36.93 3.06
773 951 1.524482 GGCTGGGAGTCCTGTCATC 59.476 63.158 9.58 0.00 36.71 2.92
774 952 1.524482 GCTGGGAGTCCTGTCATCC 59.476 63.158 9.58 0.00 34.83 3.51
776 954 3.221222 GGGAGTCCTGTCATCCCG 58.779 66.667 9.58 0.00 43.21 5.14
777 955 2.435693 GGGAGTCCTGTCATCCCGG 61.436 68.421 9.58 0.00 43.21 5.73
778 956 1.381327 GGAGTCCTGTCATCCCGGA 60.381 63.158 0.73 0.00 0.00 5.14
779 957 1.677637 GGAGTCCTGTCATCCCGGAC 61.678 65.000 0.73 0.00 45.88 4.79
780 958 2.494918 GTCCTGTCATCCCGGACG 59.505 66.667 0.73 0.00 40.72 4.79
781 959 2.050350 GTCCTGTCATCCCGGACGA 61.050 63.158 0.73 0.00 40.72 4.20
782 960 1.304630 TCCTGTCATCCCGGACGAA 60.305 57.895 0.73 0.00 40.72 3.85
783 961 0.686441 TCCTGTCATCCCGGACGAAT 60.686 55.000 0.73 0.00 40.72 3.34
784 962 0.178068 CCTGTCATCCCGGACGAATT 59.822 55.000 0.73 0.00 40.72 2.17
785 963 1.406887 CCTGTCATCCCGGACGAATTT 60.407 52.381 0.73 0.00 40.72 1.82
786 964 1.665679 CTGTCATCCCGGACGAATTTG 59.334 52.381 0.73 0.00 40.72 2.32
787 965 1.002659 TGTCATCCCGGACGAATTTGT 59.997 47.619 0.73 0.00 40.72 2.83
788 966 2.081462 GTCATCCCGGACGAATTTGTT 58.919 47.619 0.73 0.00 0.00 2.83
789 967 2.095372 GTCATCCCGGACGAATTTGTTC 59.905 50.000 0.73 0.00 0.00 3.18
798 976 0.967803 CGAATTTGTTCGTTCGCTGC 59.032 50.000 2.64 0.00 40.39 5.25
799 977 1.327507 GAATTTGTTCGTTCGCTGCC 58.672 50.000 0.00 0.00 0.00 4.85
800 978 0.039527 AATTTGTTCGTTCGCTGCCC 60.040 50.000 0.00 0.00 0.00 5.36
801 979 1.169661 ATTTGTTCGTTCGCTGCCCA 61.170 50.000 0.00 0.00 0.00 5.36
802 980 2.054140 TTTGTTCGTTCGCTGCCCAC 62.054 55.000 0.00 0.00 0.00 4.61
803 981 3.723348 GTTCGTTCGCTGCCCACC 61.723 66.667 0.00 0.00 0.00 4.61
812 990 3.716195 CTGCCCACCCCGTCATCA 61.716 66.667 0.00 0.00 0.00 3.07
813 991 3.976701 CTGCCCACCCCGTCATCAC 62.977 68.421 0.00 0.00 0.00 3.06
814 992 4.796495 GCCCACCCCGTCATCACC 62.796 72.222 0.00 0.00 0.00 4.02
815 993 4.467084 CCCACCCCGTCATCACCG 62.467 72.222 0.00 0.00 0.00 4.94
816 994 3.387091 CCACCCCGTCATCACCGA 61.387 66.667 0.00 0.00 0.00 4.69
817 995 2.660206 CACCCCGTCATCACCGAA 59.340 61.111 0.00 0.00 0.00 4.30
818 996 1.740296 CACCCCGTCATCACCGAAC 60.740 63.158 0.00 0.00 0.00 3.95
819 997 2.211410 ACCCCGTCATCACCGAACA 61.211 57.895 0.00 0.00 0.00 3.18
820 998 1.004320 CCCCGTCATCACCGAACAA 60.004 57.895 0.00 0.00 0.00 2.83
821 999 0.604243 CCCCGTCATCACCGAACAAA 60.604 55.000 0.00 0.00 0.00 2.83
822 1000 1.448985 CCCGTCATCACCGAACAAAT 58.551 50.000 0.00 0.00 0.00 2.32
823 1001 1.810151 CCCGTCATCACCGAACAAATT 59.190 47.619 0.00 0.00 0.00 1.82
824 1002 2.414029 CCCGTCATCACCGAACAAATTG 60.414 50.000 0.00 0.00 0.00 2.32
825 1003 2.225491 CCGTCATCACCGAACAAATTGT 59.775 45.455 0.00 0.00 0.00 2.71
826 1004 3.304391 CCGTCATCACCGAACAAATTGTT 60.304 43.478 11.55 11.55 44.37 2.83
836 1014 2.900122 ACAAATTGTTCGATCTGGCG 57.100 45.000 0.00 0.00 0.00 5.69
837 1015 2.422597 ACAAATTGTTCGATCTGGCGA 58.577 42.857 0.00 0.00 38.72 5.54
838 1016 2.416547 ACAAATTGTTCGATCTGGCGAG 59.583 45.455 0.00 0.00 41.79 5.03
839 1017 1.009829 AATTGTTCGATCTGGCGAGC 58.990 50.000 0.00 0.00 41.79 5.03
840 1018 0.811616 ATTGTTCGATCTGGCGAGCC 60.812 55.000 7.26 7.26 41.79 4.70
841 1019 2.166130 TTGTTCGATCTGGCGAGCCA 62.166 55.000 16.67 16.67 45.02 4.75
842 1020 2.167861 GTTCGATCTGGCGAGCCAC 61.168 63.158 13.49 2.86 41.89 5.01
843 1021 3.699955 TTCGATCTGGCGAGCCACG 62.700 63.158 13.49 15.17 41.89 4.94
844 1022 4.193334 CGATCTGGCGAGCCACGA 62.193 66.667 13.49 14.45 45.77 4.35
845 1023 2.279120 GATCTGGCGAGCCACGAG 60.279 66.667 13.49 4.05 45.77 4.18
846 1024 3.781770 GATCTGGCGAGCCACGAGG 62.782 68.421 13.49 3.67 45.77 4.63
864 1042 2.178025 CCGTACGTTCGGCCGTTA 59.822 61.111 27.15 12.14 43.96 3.18
865 1043 1.226660 CCGTACGTTCGGCCGTTAT 60.227 57.895 27.15 11.97 43.96 1.89
866 1044 1.202348 CCGTACGTTCGGCCGTTATC 61.202 60.000 27.15 12.71 43.96 1.75
867 1045 1.523368 CGTACGTTCGGCCGTTATCG 61.523 60.000 27.15 24.52 42.00 2.92
868 1046 0.248054 GTACGTTCGGCCGTTATCGA 60.248 55.000 27.15 0.06 42.00 3.59
869 1047 0.248054 TACGTTCGGCCGTTATCGAC 60.248 55.000 27.15 13.62 42.00 4.20
888 1066 6.847956 TCGACGTCCAAAGAATAAGAAAAA 57.152 33.333 10.58 0.00 0.00 1.94
919 1097 2.282958 TCCTGCTCGGACTCGGTT 60.283 61.111 0.00 0.00 36.69 4.44
920 1098 1.878656 CTCCTGCTCGGACTCGGTTT 61.879 60.000 0.00 0.00 36.69 3.27
921 1099 0.609957 TCCTGCTCGGACTCGGTTTA 60.610 55.000 0.00 0.00 36.69 2.01
927 1105 0.039256 TCGGACTCGGTTTAACCACG 60.039 55.000 14.97 9.77 38.47 4.94
930 1108 1.422388 GACTCGGTTTAACCACGTCC 58.578 55.000 14.97 1.88 38.47 4.79
931 1109 0.752054 ACTCGGTTTAACCACGTCCA 59.248 50.000 14.97 0.00 38.47 4.02
932 1110 1.345415 ACTCGGTTTAACCACGTCCAT 59.655 47.619 14.97 0.00 38.47 3.41
933 1111 1.997606 CTCGGTTTAACCACGTCCATC 59.002 52.381 14.97 0.00 38.47 3.51
934 1112 1.619827 TCGGTTTAACCACGTCCATCT 59.380 47.619 14.97 0.00 38.47 2.90
935 1113 2.824936 TCGGTTTAACCACGTCCATCTA 59.175 45.455 14.97 0.00 38.47 1.98
936 1114 3.448301 TCGGTTTAACCACGTCCATCTAT 59.552 43.478 14.97 0.00 38.47 1.98
937 1115 4.644234 TCGGTTTAACCACGTCCATCTATA 59.356 41.667 14.97 0.00 38.47 1.31
939 1117 5.987347 CGGTTTAACCACGTCCATCTATATT 59.013 40.000 14.97 0.00 38.47 1.28
940 1118 6.480981 CGGTTTAACCACGTCCATCTATATTT 59.519 38.462 14.97 0.00 38.47 1.40
941 1119 7.011669 CGGTTTAACCACGTCCATCTATATTTT 59.988 37.037 14.97 0.00 38.47 1.82
977 1155 7.002879 ACACCACGTCCATCTATATAAGTAGT 58.997 38.462 0.00 0.00 0.00 2.73
1058 1255 1.086067 CGCACGCAACATCTCCATCT 61.086 55.000 0.00 0.00 0.00 2.90
1064 1261 1.063174 GCAACATCTCCATCTCGCAAC 59.937 52.381 0.00 0.00 0.00 4.17
1073 1270 1.811965 CCATCTCGCAACAAACCATCA 59.188 47.619 0.00 0.00 0.00 3.07
1086 1292 0.469917 ACCATCAATCGGAGGCGATT 59.530 50.000 0.00 0.00 38.92 3.34
1095 1301 1.218230 CGGAGGCGATTCAAGCTAGC 61.218 60.000 6.62 6.62 34.52 3.42
1271 1483 2.107953 GGACTCCATCTGCCGAGC 59.892 66.667 0.00 0.00 0.00 5.03
1272 1484 2.430610 GGACTCCATCTGCCGAGCT 61.431 63.158 0.00 0.00 0.00 4.09
1377 1589 1.137872 GTCGAGGAGGACATGCTCATT 59.862 52.381 9.34 0.00 46.25 2.57
1540 3470 2.970639 CTCCTTCTGCCGACCGAA 59.029 61.111 0.00 0.00 0.00 4.30
1691 3621 1.228894 TCGAGCTGTTCCCTCTGGT 60.229 57.895 0.00 0.00 0.00 4.00
1777 3710 3.443925 CGCTGACCGAGCTGAGGA 61.444 66.667 11.46 0.00 46.64 3.71
1890 3824 8.527810 TGGTTGTTCTTTCATCTTACTTTTTGT 58.472 29.630 0.00 0.00 0.00 2.83
1908 3843 2.080693 TGTTGATCGTGGGGAATTTCG 58.919 47.619 0.00 0.00 0.00 3.46
1927 3862 3.659786 TCGTAGTGGGATTTGACTTGTG 58.340 45.455 0.00 0.00 0.00 3.33
1937 3872 5.491982 GGATTTGACTTGTGATGGTAGAGT 58.508 41.667 0.00 0.00 0.00 3.24
1949 3892 2.989909 TGGTAGAGTTGTGCATGATGG 58.010 47.619 0.00 0.00 0.00 3.51
1950 3893 2.292267 GGTAGAGTTGTGCATGATGGG 58.708 52.381 0.00 0.00 0.00 4.00
1951 3894 2.292267 GTAGAGTTGTGCATGATGGGG 58.708 52.381 0.00 0.00 0.00 4.96
1952 3895 0.700564 AGAGTTGTGCATGATGGGGT 59.299 50.000 0.00 0.00 0.00 4.95
1953 3896 0.813184 GAGTTGTGCATGATGGGGTG 59.187 55.000 0.00 0.00 0.00 4.61
1954 3897 0.405198 AGTTGTGCATGATGGGGTGA 59.595 50.000 0.00 0.00 0.00 4.02
1955 3898 1.006281 AGTTGTGCATGATGGGGTGAT 59.994 47.619 0.00 0.00 0.00 3.06
1968 3911 2.627699 TGGGGTGATCAAGAAAGTTTGC 59.372 45.455 0.00 0.00 0.00 3.68
1981 3924 2.415697 AGTTTGCACGCCATTGTAAC 57.584 45.000 0.00 0.00 0.00 2.50
1985 3928 2.036006 GCACGCCATTGTAACGGGA 61.036 57.895 0.00 0.00 29.87 5.14
2124 4116 5.469479 CCCATTGGTAATCAACAACTCAAC 58.531 41.667 1.20 0.00 38.31 3.18
2131 4123 7.057894 TGGTAATCAACAACTCAACCTTTAGT 58.942 34.615 0.00 0.00 0.00 2.24
2133 4125 9.227777 GGTAATCAACAACTCAACCTTTAGTAT 57.772 33.333 0.00 0.00 0.00 2.12
2156 4148 9.665264 GTATTTTTCTTGTTCAGATCGAGTTTT 57.335 29.630 0.00 0.00 0.00 2.43
2157 4149 8.788409 ATTTTTCTTGTTCAGATCGAGTTTTC 57.212 30.769 0.00 0.00 0.00 2.29
2161 4153 6.049149 TCTTGTTCAGATCGAGTTTTCTTGT 58.951 36.000 0.00 0.00 33.26 3.16
2190 4182 6.158598 TGGCAGCAATCAAGAAAGATTTTAC 58.841 36.000 0.00 0.00 36.13 2.01
2242 4234 2.030946 GCCTTGTTCGATCGGAATCAAG 59.969 50.000 16.41 16.31 40.08 3.02
2243 4235 3.521560 CCTTGTTCGATCGGAATCAAGA 58.478 45.455 22.12 4.18 41.32 3.02
2260 4253 3.323691 TCAAGATTTGACCTCCGTGAGAA 59.676 43.478 2.84 0.00 34.08 2.87
2268 4261 3.830178 TGACCTCCGTGAGAAGTTCATTA 59.170 43.478 5.50 0.00 38.29 1.90
2304 4297 8.193250 TGTTCAGTACTTCACTTAAACACTTC 57.807 34.615 0.00 0.00 36.28 3.01
2306 4299 9.525409 GTTCAGTACTTCACTTAAACACTTCTA 57.475 33.333 0.00 0.00 34.26 2.10
2324 4317 8.376270 ACACTTCTATATAATTACCTTGCCCTC 58.624 37.037 0.00 0.00 0.00 4.30
2334 4327 2.450476 ACCTTGCCCTCAATTCATCAC 58.550 47.619 0.00 0.00 0.00 3.06
2337 4330 1.466856 TGCCCTCAATTCATCACTGC 58.533 50.000 0.00 0.00 0.00 4.40
2339 4332 1.133790 GCCCTCAATTCATCACTGCAC 59.866 52.381 0.00 0.00 0.00 4.57
2353 4346 3.838317 TCACTGCACAGTCCTAATTACCT 59.162 43.478 0.00 0.00 40.20 3.08
2361 4354 5.352569 CACAGTCCTAATTACCTTGCTTCTG 59.647 44.000 0.00 0.00 0.00 3.02
2365 4358 6.431234 AGTCCTAATTACCTTGCTTCTGTTTG 59.569 38.462 0.00 0.00 0.00 2.93
2380 4373 6.535508 GCTTCTGTTTGATATACTTTCGGTCT 59.464 38.462 0.00 0.00 0.00 3.85
2391 4384 4.877323 ACTTTCGGTCTGTTGAAGAAAC 57.123 40.909 0.00 0.00 36.40 2.78
2409 4402 6.180771 AGAAACCTTGTTTTGTTTGCATTG 57.819 33.333 0.00 0.00 34.97 2.82
2410 4403 5.936956 AGAAACCTTGTTTTGTTTGCATTGA 59.063 32.000 0.00 0.00 34.97 2.57
2416 4409 7.121020 ACCTTGTTTTGTTTGCATTGAAATTCT 59.879 29.630 0.00 0.00 0.00 2.40
2425 4418 9.761504 TGTTTGCATTGAAATTCTAAATTCTGA 57.238 25.926 0.00 0.00 0.00 3.27
2452 4445 3.374042 TGGGTTGGAACTCTTGTTTCA 57.626 42.857 0.00 0.00 39.72 2.69
2465 4458 8.446599 AACTCTTGTTTCATATATAAACCCGG 57.553 34.615 0.00 0.00 36.26 5.73
2470 4463 9.550406 CTTGTTTCATATATAAACCCGGTAGAA 57.450 33.333 0.00 0.00 36.26 2.10
2483 4476 4.583907 ACCCGGTAGAAGATTCTTACTAGC 59.416 45.833 0.00 16.63 38.70 3.42
2521 4514 3.864243 ACAACCGCGATGTCCTAATTTA 58.136 40.909 8.23 0.00 0.00 1.40
2573 4566 6.043854 AGTCAAAGATAGAAGAACCCAGAC 57.956 41.667 0.00 0.00 0.00 3.51
2575 4568 6.271159 AGTCAAAGATAGAAGAACCCAGACTT 59.729 38.462 0.00 0.00 0.00 3.01
2581 4574 8.380742 AGATAGAAGAACCCAGACTTCAAATA 57.619 34.615 0.00 0.00 43.13 1.40
2582 4575 8.826765 AGATAGAAGAACCCAGACTTCAAATAA 58.173 33.333 0.00 0.00 43.13 1.40
2583 4576 9.449719 GATAGAAGAACCCAGACTTCAAATAAA 57.550 33.333 0.00 0.00 43.13 1.40
2623 4616 7.826252 TCGAAAAGGATTCTTCTGATTCTCAAT 59.174 33.333 0.00 0.00 31.82 2.57
2626 4619 9.476928 AAAAGGATTCTTCTGATTCTCAATGAT 57.523 29.630 0.00 0.00 31.82 2.45
2649 4642 3.714798 TGAGGGGTAAGTGGATTGATACC 59.285 47.826 0.00 0.00 37.63 2.73
2650 4643 3.714798 GAGGGGTAAGTGGATTGATACCA 59.285 47.826 0.00 0.00 39.65 3.25
2703 4697 7.859377 GTGATTTGATCTGCATATGTTTGGTAG 59.141 37.037 4.29 0.00 0.00 3.18
2778 4775 3.213009 GAAAACGTTCGCGGACGCA 62.213 57.895 37.98 0.00 46.47 5.24
2792 4790 0.108138 GACGCATCCCTAACAGTGCT 60.108 55.000 0.00 0.00 35.52 4.40
2814 4813 2.676121 CACCCCTCATTTGGCGCA 60.676 61.111 10.83 0.00 0.00 6.09
2830 4829 2.844362 CATCAGAGCCGCCCCCTA 60.844 66.667 0.00 0.00 0.00 3.53
2886 4885 7.186128 TGCAACGTGATTAAAATAGCACATAG 58.814 34.615 0.00 0.00 0.00 2.23
2962 4979 6.006759 AGCTCACAAAAGATTAGCAAGTTC 57.993 37.500 0.00 0.00 35.63 3.01
2991 5009 7.224362 CAGGACACAACATAGCAAATTCAAAAA 59.776 33.333 0.00 0.00 0.00 1.94
2999 5017 9.545105 AACATAGCAAATTCAAAAAGTTCATCA 57.455 25.926 0.00 0.00 0.00 3.07
3017 5035 8.690884 AGTTCATCATATGATATACTTCCTCCG 58.309 37.037 17.77 1.86 39.39 4.63
3018 5036 7.043961 TCATCATATGATATACTTCCTCCGC 57.956 40.000 17.77 0.00 33.59 5.54
3019 5037 5.854010 TCATATGATATACTTCCTCCGCC 57.146 43.478 0.00 0.00 0.00 6.13
3020 5038 5.519808 TCATATGATATACTTCCTCCGCCT 58.480 41.667 0.00 0.00 0.00 5.52
3021 5039 5.594725 TCATATGATATACTTCCTCCGCCTC 59.405 44.000 0.00 0.00 0.00 4.70
3023 5041 3.572642 TGATATACTTCCTCCGCCTCAA 58.427 45.455 0.00 0.00 0.00 3.02
3024 5042 3.964688 TGATATACTTCCTCCGCCTCAAA 59.035 43.478 0.00 0.00 0.00 2.69
3025 5043 4.407621 TGATATACTTCCTCCGCCTCAAAA 59.592 41.667 0.00 0.00 0.00 2.44
3026 5044 3.933861 ATACTTCCTCCGCCTCAAAAT 57.066 42.857 0.00 0.00 0.00 1.82
3027 5045 6.269077 TGATATACTTCCTCCGCCTCAAAATA 59.731 38.462 0.00 0.00 0.00 1.40
3028 5046 3.713826 ACTTCCTCCGCCTCAAAATAA 57.286 42.857 0.00 0.00 0.00 1.40
3029 5047 3.344515 ACTTCCTCCGCCTCAAAATAAC 58.655 45.455 0.00 0.00 0.00 1.89
3030 5048 3.009143 ACTTCCTCCGCCTCAAAATAACT 59.991 43.478 0.00 0.00 0.00 2.24
3031 5049 2.985896 TCCTCCGCCTCAAAATAACTG 58.014 47.619 0.00 0.00 0.00 3.16
3032 5050 2.304761 TCCTCCGCCTCAAAATAACTGT 59.695 45.455 0.00 0.00 0.00 3.55
3033 5051 2.678336 CCTCCGCCTCAAAATAACTGTC 59.322 50.000 0.00 0.00 0.00 3.51
3034 5052 3.600388 CTCCGCCTCAAAATAACTGTCT 58.400 45.455 0.00 0.00 0.00 3.41
3035 5053 3.596214 TCCGCCTCAAAATAACTGTCTC 58.404 45.455 0.00 0.00 0.00 3.36
3036 5054 3.007506 TCCGCCTCAAAATAACTGTCTCA 59.992 43.478 0.00 0.00 0.00 3.27
3037 5055 3.751175 CCGCCTCAAAATAACTGTCTCAA 59.249 43.478 0.00 0.00 0.00 3.02
3038 5056 4.396166 CCGCCTCAAAATAACTGTCTCAAT 59.604 41.667 0.00 0.00 0.00 2.57
3039 5057 5.106157 CCGCCTCAAAATAACTGTCTCAATT 60.106 40.000 0.00 0.00 0.00 2.32
3040 5058 6.381801 CGCCTCAAAATAACTGTCTCAATTT 58.618 36.000 0.00 0.00 0.00 1.82
3041 5059 6.863126 CGCCTCAAAATAACTGTCTCAATTTT 59.137 34.615 0.00 0.00 33.07 1.82
3042 5060 7.148918 CGCCTCAAAATAACTGTCTCAATTTTG 60.149 37.037 16.35 16.35 44.73 2.44
3043 5061 7.653311 GCCTCAAAATAACTGTCTCAATTTTGT 59.347 33.333 19.03 0.00 44.18 2.83
3079 5097 6.313744 ACAAAGTTGTACTAACATTGAGGC 57.686 37.500 21.70 0.00 40.16 4.70
3080 5098 5.825679 ACAAAGTTGTACTAACATTGAGGCA 59.174 36.000 21.70 0.00 40.16 4.75
3081 5099 5.941948 AAGTTGTACTAACATTGAGGCAC 57.058 39.130 9.74 0.00 34.97 5.01
3082 5100 5.228945 AGTTGTACTAACATTGAGGCACT 57.771 39.130 9.74 0.00 36.96 4.40
3083 5101 5.621193 AGTTGTACTAACATTGAGGCACTT 58.379 37.500 9.74 0.00 34.72 3.16
3084 5102 6.765403 AGTTGTACTAACATTGAGGCACTTA 58.235 36.000 9.74 0.00 34.72 2.24
3085 5103 7.394816 AGTTGTACTAACATTGAGGCACTTAT 58.605 34.615 9.74 0.00 34.72 1.73
3086 5104 7.883311 AGTTGTACTAACATTGAGGCACTTATT 59.117 33.333 9.74 0.00 34.72 1.40
3087 5105 8.512138 GTTGTACTAACATTGAGGCACTTATTT 58.488 33.333 0.00 0.00 34.72 1.40
3088 5106 8.630054 TGTACTAACATTGAGGCACTTATTTT 57.370 30.769 0.00 0.00 41.55 1.82
3089 5107 8.511321 TGTACTAACATTGAGGCACTTATTTTG 58.489 33.333 0.00 0.00 41.55 2.44
3090 5108 6.924111 ACTAACATTGAGGCACTTATTTTGG 58.076 36.000 0.00 0.00 41.55 3.28
3091 5109 4.806640 ACATTGAGGCACTTATTTTGGG 57.193 40.909 0.00 0.00 41.55 4.12
3092 5110 4.415596 ACATTGAGGCACTTATTTTGGGA 58.584 39.130 0.00 0.00 41.55 4.37
3093 5111 4.220602 ACATTGAGGCACTTATTTTGGGAC 59.779 41.667 0.00 0.00 41.55 4.46
3094 5112 3.517296 TGAGGCACTTATTTTGGGACA 57.483 42.857 0.00 0.00 41.55 4.02
3095 5113 3.420893 TGAGGCACTTATTTTGGGACAG 58.579 45.455 0.00 0.00 41.55 3.51
3096 5114 3.073798 TGAGGCACTTATTTTGGGACAGA 59.926 43.478 0.00 0.00 41.55 3.41
3097 5115 3.690460 AGGCACTTATTTTGGGACAGAG 58.310 45.455 0.00 0.00 33.92 3.35
3098 5116 2.755103 GGCACTTATTTTGGGACAGAGG 59.245 50.000 0.00 0.00 42.39 3.69
3099 5117 2.755103 GCACTTATTTTGGGACAGAGGG 59.245 50.000 0.00 0.00 42.39 4.30
3100 5118 3.561313 GCACTTATTTTGGGACAGAGGGA 60.561 47.826 0.00 0.00 42.39 4.20
3101 5119 4.265073 CACTTATTTTGGGACAGAGGGAG 58.735 47.826 0.00 0.00 42.39 4.30
3112 5130 5.615692 TGGGACAGAGGGAGTATAAGATAGA 59.384 44.000 0.00 0.00 0.00 1.98
3122 5140 5.198207 GAGTATAAGATAGAGAGAGGGGGC 58.802 50.000 0.00 0.00 0.00 5.80
3124 5142 0.830023 AAGATAGAGAGAGGGGGCGC 60.830 60.000 0.00 0.00 0.00 6.53
3125 5143 2.203714 ATAGAGAGAGGGGGCGCC 60.204 66.667 21.18 21.18 0.00 6.53
3159 5177 2.286121 TCGCCAATCCCTTCCCCT 60.286 61.111 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 6.587608 GCTCATTTTGTCTTCGGATTGAAAAT 59.412 34.615 0.00 0.00 35.79 1.82
92 94 9.099454 CCATTAACCATCTCAAACTAAGTAGAC 57.901 37.037 0.00 0.00 0.00 2.59
147 150 3.120199 GCATGGTGCATATGATTCGTACC 60.120 47.826 15.58 5.05 44.26 3.34
270 274 8.706322 AGGTTAGTTATGAACTCAAAAACCAT 57.294 30.769 17.69 6.37 43.79 3.55
334 338 4.656041 GATCTGGTTCAATTTCTCGCAAG 58.344 43.478 0.00 0.00 0.00 4.01
577 755 1.871039 CAGTTCGTTCACCGTTGGATT 59.129 47.619 0.00 0.00 37.94 3.01
596 774 2.290367 CAGTTTGCAACAGATCCGAACA 59.710 45.455 0.00 0.00 0.00 3.18
652 830 2.675889 CGGCCCAGTTTGTACTACGAAT 60.676 50.000 0.00 0.00 31.96 3.34
654 832 0.244450 CGGCCCAGTTTGTACTACGA 59.756 55.000 0.00 0.00 31.96 3.43
655 833 0.037975 ACGGCCCAGTTTGTACTACG 60.038 55.000 0.00 0.00 31.96 3.51
656 834 2.232208 AGTACGGCCCAGTTTGTACTAC 59.768 50.000 14.88 0.00 44.08 2.73
657 835 2.528564 AGTACGGCCCAGTTTGTACTA 58.471 47.619 14.88 0.00 44.08 1.82
658 836 1.345063 AGTACGGCCCAGTTTGTACT 58.655 50.000 11.72 11.72 41.86 2.73
659 837 2.417787 CCTAGTACGGCCCAGTTTGTAC 60.418 54.545 0.00 2.38 37.93 2.90
660 838 1.826720 CCTAGTACGGCCCAGTTTGTA 59.173 52.381 0.00 0.00 0.00 2.41
661 839 0.611714 CCTAGTACGGCCCAGTTTGT 59.388 55.000 0.00 0.00 0.00 2.83
662 840 0.743345 GCCTAGTACGGCCCAGTTTG 60.743 60.000 0.00 0.00 44.41 2.93
663 841 1.600638 GCCTAGTACGGCCCAGTTT 59.399 57.895 0.00 0.00 44.41 2.66
664 842 3.306379 GCCTAGTACGGCCCAGTT 58.694 61.111 0.00 0.00 44.41 3.16
671 849 7.373778 ACAAAGAAAATAAAGCCTAGTACGG 57.626 36.000 0.00 0.00 0.00 4.02
672 850 9.673454 AAAACAAAGAAAATAAAGCCTAGTACG 57.327 29.630 0.00 0.00 0.00 3.67
689 867 9.932207 TCGTCCTTATTATGACTAAAACAAAGA 57.068 29.630 0.00 0.00 0.00 2.52
690 868 9.968743 GTCGTCCTTATTATGACTAAAACAAAG 57.031 33.333 0.00 0.00 31.47 2.77
691 869 8.938906 GGTCGTCCTTATTATGACTAAAACAAA 58.061 33.333 0.00 0.00 34.07 2.83
692 870 7.550196 GGGTCGTCCTTATTATGACTAAAACAA 59.450 37.037 0.00 0.00 34.07 2.83
693 871 7.043565 GGGTCGTCCTTATTATGACTAAAACA 58.956 38.462 0.00 0.00 34.07 2.83
694 872 7.043565 TGGGTCGTCCTTATTATGACTAAAAC 58.956 38.462 0.00 0.00 34.07 2.43
695 873 7.093201 ACTGGGTCGTCCTTATTATGACTAAAA 60.093 37.037 0.00 0.00 34.07 1.52
696 874 6.381994 ACTGGGTCGTCCTTATTATGACTAAA 59.618 38.462 0.00 0.00 34.07 1.85
697 875 5.895534 ACTGGGTCGTCCTTATTATGACTAA 59.104 40.000 0.00 0.00 34.07 2.24
698 876 5.452255 ACTGGGTCGTCCTTATTATGACTA 58.548 41.667 0.00 0.00 34.07 2.59
699 877 4.287552 ACTGGGTCGTCCTTATTATGACT 58.712 43.478 0.00 0.00 34.07 3.41
700 878 4.667519 ACTGGGTCGTCCTTATTATGAC 57.332 45.455 0.00 0.00 36.20 3.06
701 879 4.276678 CGTACTGGGTCGTCCTTATTATGA 59.723 45.833 0.00 0.00 36.20 2.15
702 880 4.543692 CGTACTGGGTCGTCCTTATTATG 58.456 47.826 0.00 0.00 36.20 1.90
703 881 3.571401 CCGTACTGGGTCGTCCTTATTAT 59.429 47.826 0.00 0.00 36.20 1.28
704 882 2.951642 CCGTACTGGGTCGTCCTTATTA 59.048 50.000 0.00 0.00 36.20 0.98
705 883 1.753073 CCGTACTGGGTCGTCCTTATT 59.247 52.381 0.00 0.00 36.20 1.40
706 884 1.064463 TCCGTACTGGGTCGTCCTTAT 60.064 52.381 0.00 0.00 38.76 1.73
707 885 0.327924 TCCGTACTGGGTCGTCCTTA 59.672 55.000 0.00 0.00 38.76 2.69
708 886 0.540365 TTCCGTACTGGGTCGTCCTT 60.540 55.000 0.00 0.00 38.76 3.36
709 887 0.964358 CTTCCGTACTGGGTCGTCCT 60.964 60.000 0.00 0.00 38.76 3.85
710 888 1.509923 CTTCCGTACTGGGTCGTCC 59.490 63.158 4.30 0.00 38.76 4.79
711 889 1.153881 GCTTCCGTACTGGGTCGTC 60.154 63.158 4.30 0.00 38.76 4.20
712 890 0.322816 TAGCTTCCGTACTGGGTCGT 60.323 55.000 0.00 0.00 38.76 4.34
713 891 1.030457 ATAGCTTCCGTACTGGGTCG 58.970 55.000 0.00 0.00 38.76 4.79
714 892 1.538419 GCATAGCTTCCGTACTGGGTC 60.538 57.143 0.00 0.00 38.76 4.46
715 893 0.464452 GCATAGCTTCCGTACTGGGT 59.536 55.000 0.00 0.00 38.76 4.51
716 894 0.753262 AGCATAGCTTCCGTACTGGG 59.247 55.000 0.00 0.00 33.89 4.45
717 895 1.539065 CCAGCATAGCTTCCGTACTGG 60.539 57.143 0.00 0.00 36.40 4.00
718 896 1.539065 CCCAGCATAGCTTCCGTACTG 60.539 57.143 0.00 0.00 36.40 2.74
719 897 0.753262 CCCAGCATAGCTTCCGTACT 59.247 55.000 0.00 0.00 36.40 2.73
720 898 0.464452 ACCCAGCATAGCTTCCGTAC 59.536 55.000 0.00 0.00 36.40 3.67
721 899 0.464036 CACCCAGCATAGCTTCCGTA 59.536 55.000 0.00 0.00 36.40 4.02
722 900 1.221840 CACCCAGCATAGCTTCCGT 59.778 57.895 0.00 0.00 36.40 4.69
723 901 1.524621 CCACCCAGCATAGCTTCCG 60.525 63.158 0.00 0.00 36.40 4.30
724 902 1.152881 CCCACCCAGCATAGCTTCC 60.153 63.158 0.00 0.00 36.40 3.46
725 903 1.152881 CCCCACCCAGCATAGCTTC 60.153 63.158 0.00 0.00 36.40 3.86
726 904 2.693871 CCCCCACCCAGCATAGCTT 61.694 63.158 0.00 0.00 36.40 3.74
727 905 3.099170 CCCCCACCCAGCATAGCT 61.099 66.667 0.00 0.00 40.77 3.32
728 906 3.096495 TCCCCCACCCAGCATAGC 61.096 66.667 0.00 0.00 0.00 2.97
729 907 2.455565 CCTCCCCCACCCAGCATAG 61.456 68.421 0.00 0.00 0.00 2.23
730 908 2.368192 CCTCCCCCACCCAGCATA 60.368 66.667 0.00 0.00 0.00 3.14
749 927 4.452733 GGACTCCCAGCCCGAACG 62.453 72.222 0.00 0.00 0.00 3.95
750 928 3.003763 AGGACTCCCAGCCCGAAC 61.004 66.667 0.00 0.00 33.88 3.95
751 929 3.003173 CAGGACTCCCAGCCCGAA 61.003 66.667 0.00 0.00 33.88 4.30
752 930 4.316823 ACAGGACTCCCAGCCCGA 62.317 66.667 0.00 0.00 33.88 5.14
753 931 3.775654 GACAGGACTCCCAGCCCG 61.776 72.222 0.00 0.00 33.88 6.13
754 932 1.977293 GATGACAGGACTCCCAGCCC 61.977 65.000 0.00 0.00 33.88 5.19
755 933 1.524482 GATGACAGGACTCCCAGCC 59.476 63.158 0.00 0.00 33.88 4.85
756 934 1.524482 GGATGACAGGACTCCCAGC 59.476 63.158 0.00 0.00 33.88 4.85
757 935 2.216148 GGGATGACAGGACTCCCAG 58.784 63.158 6.94 0.00 46.70 4.45
758 936 4.480480 GGGATGACAGGACTCCCA 57.520 61.111 6.94 0.00 46.70 4.37
759 937 2.435693 CCGGGATGACAGGACTCCC 61.436 68.421 0.00 2.14 44.45 4.30
760 938 1.381327 TCCGGGATGACAGGACTCC 60.381 63.158 0.00 0.00 0.00 3.85
761 939 4.356979 TCCGGGATGACAGGACTC 57.643 61.111 0.00 0.00 0.00 3.36
764 942 0.686441 ATTCGTCCGGGATGACAGGA 60.686 55.000 18.42 4.66 34.88 3.86
765 943 0.178068 AATTCGTCCGGGATGACAGG 59.822 55.000 18.42 0.00 34.88 4.00
766 944 1.665679 CAAATTCGTCCGGGATGACAG 59.334 52.381 18.42 5.41 34.88 3.51
767 945 1.002659 ACAAATTCGTCCGGGATGACA 59.997 47.619 18.42 10.35 34.88 3.58
768 946 1.734163 ACAAATTCGTCCGGGATGAC 58.266 50.000 18.42 0.00 0.00 3.06
769 947 2.352388 GAACAAATTCGTCCGGGATGA 58.648 47.619 14.95 14.95 0.00 2.92
770 948 2.825086 GAACAAATTCGTCCGGGATG 57.175 50.000 10.10 10.10 0.00 3.51
780 958 1.327507 GGCAGCGAACGAACAAATTC 58.672 50.000 0.00 0.00 0.00 2.17
781 959 0.039527 GGGCAGCGAACGAACAAATT 60.040 50.000 0.00 0.00 0.00 1.82
782 960 1.169661 TGGGCAGCGAACGAACAAAT 61.170 50.000 0.00 0.00 0.00 2.32
783 961 1.820056 TGGGCAGCGAACGAACAAA 60.820 52.632 0.00 0.00 0.00 2.83
784 962 2.203084 TGGGCAGCGAACGAACAA 60.203 55.556 0.00 0.00 0.00 2.83
785 963 2.970324 GTGGGCAGCGAACGAACA 60.970 61.111 0.00 0.00 0.00 3.18
786 964 3.723348 GGTGGGCAGCGAACGAAC 61.723 66.667 0.00 0.00 0.00 3.95
795 973 3.716195 TGATGACGGGGTGGGCAG 61.716 66.667 0.00 0.00 0.00 4.85
796 974 4.028490 GTGATGACGGGGTGGGCA 62.028 66.667 0.00 0.00 0.00 5.36
797 975 4.796495 GGTGATGACGGGGTGGGC 62.796 72.222 0.00 0.00 0.00 5.36
798 976 4.467084 CGGTGATGACGGGGTGGG 62.467 72.222 0.00 0.00 0.00 4.61
799 977 2.949909 TTCGGTGATGACGGGGTGG 61.950 63.158 0.00 0.00 0.00 4.61
800 978 1.740296 GTTCGGTGATGACGGGGTG 60.740 63.158 0.00 0.00 0.00 4.61
801 979 1.760479 TTGTTCGGTGATGACGGGGT 61.760 55.000 0.00 0.00 0.00 4.95
802 980 0.604243 TTTGTTCGGTGATGACGGGG 60.604 55.000 0.00 0.00 0.00 5.73
803 981 1.448985 ATTTGTTCGGTGATGACGGG 58.551 50.000 0.00 0.00 0.00 5.28
804 982 2.225491 ACAATTTGTTCGGTGATGACGG 59.775 45.455 0.00 0.00 0.00 4.79
805 983 3.536158 ACAATTTGTTCGGTGATGACG 57.464 42.857 0.00 0.00 0.00 4.35
816 994 2.811431 TCGCCAGATCGAACAATTTGTT 59.189 40.909 14.42 14.42 44.37 2.83
817 995 2.416547 CTCGCCAGATCGAACAATTTGT 59.583 45.455 0.00 0.00 38.08 2.83
818 996 2.789092 GCTCGCCAGATCGAACAATTTG 60.789 50.000 0.00 0.00 38.08 2.32
819 997 1.398390 GCTCGCCAGATCGAACAATTT 59.602 47.619 0.00 0.00 38.08 1.82
820 998 1.009829 GCTCGCCAGATCGAACAATT 58.990 50.000 0.00 0.00 38.08 2.32
821 999 0.811616 GGCTCGCCAGATCGAACAAT 60.812 55.000 2.41 0.00 38.08 2.71
822 1000 1.447838 GGCTCGCCAGATCGAACAA 60.448 57.895 2.41 0.00 38.08 2.83
823 1001 2.184322 GGCTCGCCAGATCGAACA 59.816 61.111 2.41 0.00 38.08 3.18
824 1002 2.184322 TGGCTCGCCAGATCGAAC 59.816 61.111 6.52 0.00 41.89 3.95
852 1030 3.292602 GTCGATAACGGCCGAACG 58.707 61.111 35.90 27.55 38.25 3.95
861 1039 7.515957 TTCTTATTCTTTGGACGTCGATAAC 57.484 36.000 9.92 0.00 0.00 1.89
862 1040 8.537049 TTTTCTTATTCTTTGGACGTCGATAA 57.463 30.769 9.92 1.89 0.00 1.75
863 1041 8.537049 TTTTTCTTATTCTTTGGACGTCGATA 57.463 30.769 9.92 0.00 0.00 2.92
864 1042 7.429636 TTTTTCTTATTCTTTGGACGTCGAT 57.570 32.000 9.92 0.00 0.00 3.59
865 1043 6.847956 TTTTTCTTATTCTTTGGACGTCGA 57.152 33.333 9.92 1.86 0.00 4.20
945 1123 2.631062 AGATGGACGTGGTGTACTCAAA 59.369 45.455 0.00 0.00 30.20 2.69
946 1124 2.244695 AGATGGACGTGGTGTACTCAA 58.755 47.619 0.00 0.00 30.20 3.02
947 1125 1.919240 AGATGGACGTGGTGTACTCA 58.081 50.000 0.00 0.00 30.20 3.41
948 1126 5.961396 ATATAGATGGACGTGGTGTACTC 57.039 43.478 0.00 0.00 30.20 2.59
950 1128 7.211966 ACTTATATAGATGGACGTGGTGTAC 57.788 40.000 0.00 0.00 0.00 2.90
951 1129 8.159447 ACTACTTATATAGATGGACGTGGTGTA 58.841 37.037 0.00 0.00 0.00 2.90
952 1130 7.002879 ACTACTTATATAGATGGACGTGGTGT 58.997 38.462 0.00 0.00 0.00 4.16
953 1131 7.174426 TGACTACTTATATAGATGGACGTGGTG 59.826 40.741 0.00 0.00 0.00 4.17
954 1132 7.174599 GTGACTACTTATATAGATGGACGTGGT 59.825 40.741 0.00 0.00 0.00 4.16
956 1134 7.235080 CGTGACTACTTATATAGATGGACGTG 58.765 42.308 0.00 0.00 0.00 4.49
957 1135 6.128336 GCGTGACTACTTATATAGATGGACGT 60.128 42.308 0.00 0.00 0.00 4.34
1001 1180 2.156051 GAAGAGAAGGTGGACGCGGT 62.156 60.000 12.47 0.00 0.00 5.68
1003 1182 1.446272 GGAAGAGAAGGTGGACGCG 60.446 63.158 3.53 3.53 0.00 6.01
1004 1183 1.446272 CGGAAGAGAAGGTGGACGC 60.446 63.158 0.00 0.00 0.00 5.19
1058 1255 1.198867 CCGATTGATGGTTTGTTGCGA 59.801 47.619 0.00 0.00 0.00 5.10
1064 1261 0.378257 CGCCTCCGATTGATGGTTTG 59.622 55.000 0.00 0.00 36.29 2.93
1086 1292 0.975556 TCACCATCCCGCTAGCTTGA 60.976 55.000 13.93 9.31 0.00 3.02
1176 1388 1.067295 TGGTCCACATCTTCTTGGCT 58.933 50.000 0.00 0.00 32.37 4.75
1377 1589 2.345991 GCGGCCTGGTACTTGACA 59.654 61.111 0.00 0.00 0.00 3.58
1615 3545 3.571119 GACCTCCGTCGAACGAGA 58.429 61.111 10.78 5.43 46.05 4.04
1691 3621 2.529136 CCCTGATATCCCCGGGCA 60.529 66.667 17.73 0.00 0.00 5.36
1726 3659 3.188786 GGACATGTCACTCGGCGC 61.189 66.667 26.47 0.00 0.00 6.53
1764 3697 1.739049 CCAGATCCTCAGCTCGGTC 59.261 63.158 0.00 0.00 0.00 4.79
1890 3824 2.483014 ACGAAATTCCCCACGATCAA 57.517 45.000 0.00 0.00 0.00 2.57
1908 3843 4.396166 CCATCACAAGTCAAATCCCACTAC 59.604 45.833 0.00 0.00 0.00 2.73
1927 3862 3.562973 CCATCATGCACAACTCTACCATC 59.437 47.826 0.00 0.00 0.00 3.51
1937 3872 1.005687 TGATCACCCCATCATGCACAA 59.994 47.619 0.00 0.00 0.00 3.33
1949 3892 3.642705 GTGCAAACTTTCTTGATCACCC 58.357 45.455 0.00 0.00 0.00 4.61
1950 3893 3.300009 CGTGCAAACTTTCTTGATCACC 58.700 45.455 0.00 0.00 0.00 4.02
1951 3894 2.721090 GCGTGCAAACTTTCTTGATCAC 59.279 45.455 0.00 0.00 0.00 3.06
1952 3895 2.287547 GGCGTGCAAACTTTCTTGATCA 60.288 45.455 0.00 0.00 0.00 2.92
1953 3896 2.287547 TGGCGTGCAAACTTTCTTGATC 60.288 45.455 0.00 0.00 0.00 2.92
1954 3897 1.680735 TGGCGTGCAAACTTTCTTGAT 59.319 42.857 0.00 0.00 0.00 2.57
1955 3898 1.098869 TGGCGTGCAAACTTTCTTGA 58.901 45.000 0.00 0.00 0.00 3.02
1968 3911 0.390603 TCTCCCGTTACAATGGCGTG 60.391 55.000 0.00 0.00 33.59 5.34
1981 3924 0.179089 CAAGATCCACAGCTCTCCCG 60.179 60.000 0.00 0.00 0.00 5.14
1985 3928 3.378512 TGATACCAAGATCCACAGCTCT 58.621 45.455 0.00 0.00 0.00 4.09
2016 3975 5.858475 AGCAAGACGATTACAGAAAATTCG 58.142 37.500 0.00 0.00 0.00 3.34
2054 4013 5.993106 ACACTAACTTCAGACTTTCTTGC 57.007 39.130 0.00 0.00 0.00 4.01
2124 4116 9.760660 CGATCTGAACAAGAAAAATACTAAAGG 57.239 33.333 0.00 0.00 38.79 3.11
2131 4123 9.878599 GAAAACTCGATCTGAACAAGAAAAATA 57.121 29.630 0.00 0.00 38.79 1.40
2133 4125 7.985476 AGAAAACTCGATCTGAACAAGAAAAA 58.015 30.769 0.00 0.00 38.79 1.94
2137 4129 6.049149 ACAAGAAAACTCGATCTGAACAAGA 58.951 36.000 0.00 0.00 39.94 3.02
2147 4139 4.142271 TGCCAACAAACAAGAAAACTCGAT 60.142 37.500 0.00 0.00 0.00 3.59
2151 4143 3.261580 GCTGCCAACAAACAAGAAAACT 58.738 40.909 0.00 0.00 0.00 2.66
2156 4148 2.429971 TGATTGCTGCCAACAAACAAGA 59.570 40.909 0.00 0.00 32.95 3.02
2157 4149 2.823984 TGATTGCTGCCAACAAACAAG 58.176 42.857 0.00 0.00 32.95 3.16
2161 4153 3.815856 TTCTTGATTGCTGCCAACAAA 57.184 38.095 0.00 0.00 32.95 2.83
2190 4182 4.533222 ACGCAATAAAGTTTCCAAGAACG 58.467 39.130 0.00 0.00 34.74 3.95
2217 4209 1.375396 CCGATCGAACAAGGCACCA 60.375 57.895 18.66 0.00 0.00 4.17
2218 4210 0.672401 TTCCGATCGAACAAGGCACC 60.672 55.000 18.66 0.00 0.00 5.01
2242 4234 3.320673 ACTTCTCACGGAGGTCAAATC 57.679 47.619 1.76 0.00 27.32 2.17
2243 4235 3.071023 TGAACTTCTCACGGAGGTCAAAT 59.929 43.478 1.76 0.00 32.93 2.32
2304 4297 9.739276 TGAATTGAGGGCAAGGTAATTATATAG 57.261 33.333 0.00 0.00 37.45 1.31
2306 4299 9.247861 GATGAATTGAGGGCAAGGTAATTATAT 57.752 33.333 0.00 0.00 37.45 0.86
2307 4300 8.224025 TGATGAATTGAGGGCAAGGTAATTATA 58.776 33.333 0.00 0.00 37.45 0.98
2308 4301 7.014615 GTGATGAATTGAGGGCAAGGTAATTAT 59.985 37.037 0.00 0.00 37.45 1.28
2309 4302 6.321181 GTGATGAATTGAGGGCAAGGTAATTA 59.679 38.462 0.00 0.00 37.45 1.40
2310 4303 5.127682 GTGATGAATTGAGGGCAAGGTAATT 59.872 40.000 0.00 0.00 37.45 1.40
2324 4317 3.079578 AGGACTGTGCAGTGATGAATTG 58.920 45.455 9.80 0.00 42.66 2.32
2334 4327 3.375299 GCAAGGTAATTAGGACTGTGCAG 59.625 47.826 1.24 0.00 31.22 4.41
2337 4330 5.352569 CAGAAGCAAGGTAATTAGGACTGTG 59.647 44.000 0.00 0.00 0.00 3.66
2339 4332 5.491982 ACAGAAGCAAGGTAATTAGGACTG 58.508 41.667 0.00 0.00 0.00 3.51
2353 4346 6.653320 ACCGAAAGTATATCAAACAGAAGCAA 59.347 34.615 0.00 0.00 0.00 3.91
2361 4354 7.591006 TCAACAGACCGAAAGTATATCAAAC 57.409 36.000 0.00 0.00 0.00 2.93
2365 4358 8.381387 GTTTCTTCAACAGACCGAAAGTATATC 58.619 37.037 0.00 0.00 35.18 1.63
2380 4373 6.293135 GCAAACAAAACAAGGTTTCTTCAACA 60.293 34.615 0.00 0.00 37.07 3.33
2391 4384 7.474190 AGAATTTCAATGCAAACAAAACAAGG 58.526 30.769 0.00 0.00 0.00 3.61
2409 4402 9.196552 CCCAACTGTTTCAGAATTTAGAATTTC 57.803 33.333 3.70 0.00 35.18 2.17
2410 4403 8.704668 ACCCAACTGTTTCAGAATTTAGAATTT 58.295 29.630 3.70 0.00 35.18 1.82
2416 4409 5.894393 TCCAACCCAACTGTTTCAGAATTTA 59.106 36.000 3.70 0.00 35.18 1.40
2425 4418 3.382083 AGAGTTCCAACCCAACTGTTT 57.618 42.857 0.00 0.00 34.10 2.83
2465 4458 9.122779 TGAAGTAGGCTAGTAAGAATCTTCTAC 57.877 37.037 14.47 4.16 36.28 2.59
2470 4463 6.264518 GCTCTGAAGTAGGCTAGTAAGAATCT 59.735 42.308 1.51 0.00 0.00 2.40
2475 4468 5.534654 AGATGCTCTGAAGTAGGCTAGTAAG 59.465 44.000 1.51 4.18 0.00 2.34
2483 4476 4.688021 GGTTGTAGATGCTCTGAAGTAGG 58.312 47.826 0.00 0.00 0.00 3.18
2521 4514 4.721776 TCTTGGCTTCATATACAGAGGGTT 59.278 41.667 0.00 0.00 0.00 4.11
2535 4528 9.780413 CTATCTTTGACTTATTTTCTTGGCTTC 57.220 33.333 0.00 0.00 0.00 3.86
2586 4579 7.290110 AGAATCCTTTTCGAGTTTCCAATTT 57.710 32.000 0.00 0.00 0.00 1.82
2589 4582 6.017109 CAGAAGAATCCTTTTCGAGTTTCCAA 60.017 38.462 0.00 0.00 31.62 3.53
2623 4616 3.849574 TCAATCCACTTACCCCTCAATCA 59.150 43.478 0.00 0.00 0.00 2.57
2626 4619 4.165372 GGTATCAATCCACTTACCCCTCAA 59.835 45.833 0.00 0.00 0.00 3.02
2634 4627 9.753674 AAATCTTTCTTGGTATCAATCCACTTA 57.246 29.630 0.00 0.00 34.45 2.24
2757 4754 0.709467 CGTCCGCGAACGTTTTCATA 59.291 50.000 10.61 0.00 41.33 2.15
2776 4773 1.098050 CCAAGCACTGTTAGGGATGC 58.902 55.000 0.00 0.00 38.39 3.91
2778 4775 1.985159 TGACCAAGCACTGTTAGGGAT 59.015 47.619 0.00 0.00 0.00 3.85
2814 4813 1.062488 ATTTAGGGGGCGGCTCTGAT 61.062 55.000 9.45 0.00 0.00 2.90
2829 4828 5.767670 TGGATTTGGGGTTTCGGATATTTA 58.232 37.500 0.00 0.00 0.00 1.40
2830 4829 4.615513 TGGATTTGGGGTTTCGGATATTT 58.384 39.130 0.00 0.00 0.00 1.40
2935 4946 3.120199 TGCTAATCTTTTGTGAGCTTCGC 60.120 43.478 0.00 0.00 34.19 4.70
2936 4947 4.668576 TGCTAATCTTTTGTGAGCTTCG 57.331 40.909 0.00 0.00 34.19 3.79
2940 4951 5.762045 TGAACTTGCTAATCTTTTGTGAGC 58.238 37.500 0.00 0.00 0.00 4.26
2962 4979 4.566545 TTTGCTATGTTGTGTCCTGTTG 57.433 40.909 0.00 0.00 0.00 3.33
2991 5009 8.690884 CGGAGGAAGTATATCATATGATGAACT 58.309 37.037 25.44 22.70 43.50 3.01
2999 5017 5.519808 TGAGGCGGAGGAAGTATATCATAT 58.480 41.667 0.00 0.00 0.00 1.78
3009 5027 3.375299 CAGTTATTTTGAGGCGGAGGAAG 59.625 47.826 0.00 0.00 0.00 3.46
3010 5028 3.244770 ACAGTTATTTTGAGGCGGAGGAA 60.245 43.478 0.00 0.00 0.00 3.36
3012 5030 2.678336 GACAGTTATTTTGAGGCGGAGG 59.322 50.000 0.00 0.00 0.00 4.30
3013 5031 3.600388 AGACAGTTATTTTGAGGCGGAG 58.400 45.455 0.00 0.00 0.00 4.63
3014 5032 3.007506 TGAGACAGTTATTTTGAGGCGGA 59.992 43.478 0.00 0.00 0.00 5.54
3015 5033 3.334691 TGAGACAGTTATTTTGAGGCGG 58.665 45.455 0.00 0.00 0.00 6.13
3016 5034 5.551760 ATTGAGACAGTTATTTTGAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
3017 5035 7.653311 ACAAAATTGAGACAGTTATTTTGAGGC 59.347 33.333 19.88 0.00 44.64 4.70
3055 5073 6.993308 TGCCTCAATGTTAGTACAACTTTGTA 59.007 34.615 21.74 0.00 42.35 2.41
3056 5074 5.825679 TGCCTCAATGTTAGTACAACTTTGT 59.174 36.000 21.74 0.00 44.86 2.83
3057 5075 6.017109 AGTGCCTCAATGTTAGTACAACTTTG 60.017 38.462 19.32 19.32 37.91 2.77
3058 5076 6.062095 AGTGCCTCAATGTTAGTACAACTTT 58.938 36.000 0.00 0.26 37.91 2.66
3059 5077 5.621193 AGTGCCTCAATGTTAGTACAACTT 58.379 37.500 0.00 0.00 37.91 2.66
3060 5078 5.228945 AGTGCCTCAATGTTAGTACAACT 57.771 39.130 0.00 0.00 37.91 3.16
3061 5079 5.941948 AAGTGCCTCAATGTTAGTACAAC 57.058 39.130 0.00 0.00 37.91 3.32
3062 5080 8.630054 AAATAAGTGCCTCAATGTTAGTACAA 57.370 30.769 0.00 0.00 37.91 2.41
3063 5081 8.511321 CAAAATAAGTGCCTCAATGTTAGTACA 58.489 33.333 0.00 0.00 38.95 2.90
3064 5082 7.968405 CCAAAATAAGTGCCTCAATGTTAGTAC 59.032 37.037 0.00 0.00 0.00 2.73
3065 5083 7.122055 CCCAAAATAAGTGCCTCAATGTTAGTA 59.878 37.037 0.00 0.00 0.00 1.82
3066 5084 6.071391 CCCAAAATAAGTGCCTCAATGTTAGT 60.071 38.462 0.00 0.00 0.00 2.24
3067 5085 6.152661 TCCCAAAATAAGTGCCTCAATGTTAG 59.847 38.462 0.00 0.00 0.00 2.34
3068 5086 6.013379 TCCCAAAATAAGTGCCTCAATGTTA 58.987 36.000 0.00 0.00 0.00 2.41
3069 5087 4.837860 TCCCAAAATAAGTGCCTCAATGTT 59.162 37.500 0.00 0.00 0.00 2.71
3070 5088 4.220602 GTCCCAAAATAAGTGCCTCAATGT 59.779 41.667 0.00 0.00 0.00 2.71
3071 5089 4.220382 TGTCCCAAAATAAGTGCCTCAATG 59.780 41.667 0.00 0.00 0.00 2.82
3072 5090 4.415596 TGTCCCAAAATAAGTGCCTCAAT 58.584 39.130 0.00 0.00 0.00 2.57
3073 5091 3.826157 CTGTCCCAAAATAAGTGCCTCAA 59.174 43.478 0.00 0.00 0.00 3.02
3074 5092 3.073798 TCTGTCCCAAAATAAGTGCCTCA 59.926 43.478 0.00 0.00 0.00 3.86
3075 5093 3.686016 TCTGTCCCAAAATAAGTGCCTC 58.314 45.455 0.00 0.00 0.00 4.70
3076 5094 3.562176 CCTCTGTCCCAAAATAAGTGCCT 60.562 47.826 0.00 0.00 0.00 4.75
3077 5095 2.755103 CCTCTGTCCCAAAATAAGTGCC 59.245 50.000 0.00 0.00 0.00 5.01
3078 5096 2.755103 CCCTCTGTCCCAAAATAAGTGC 59.245 50.000 0.00 0.00 0.00 4.40
3079 5097 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
3080 5098 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
3081 5099 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
3082 5100 7.626084 TCTTATACTCCCTCTGTCCCAAAATAA 59.374 37.037 0.00 0.00 0.00 1.40
3083 5101 7.136885 TCTTATACTCCCTCTGTCCCAAAATA 58.863 38.462 0.00 0.00 0.00 1.40
3084 5102 5.970640 TCTTATACTCCCTCTGTCCCAAAAT 59.029 40.000 0.00 0.00 0.00 1.82
3085 5103 5.347124 TCTTATACTCCCTCTGTCCCAAAA 58.653 41.667 0.00 0.00 0.00 2.44
3086 5104 4.955335 TCTTATACTCCCTCTGTCCCAAA 58.045 43.478 0.00 0.00 0.00 3.28
3087 5105 4.620086 TCTTATACTCCCTCTGTCCCAA 57.380 45.455 0.00 0.00 0.00 4.12
3088 5106 4.834406 ATCTTATACTCCCTCTGTCCCA 57.166 45.455 0.00 0.00 0.00 4.37
3089 5107 6.012333 TCTCTATCTTATACTCCCTCTGTCCC 60.012 46.154 0.00 0.00 0.00 4.46
3090 5108 7.023171 TCTCTATCTTATACTCCCTCTGTCC 57.977 44.000 0.00 0.00 0.00 4.02
3091 5109 7.913789 TCTCTCTATCTTATACTCCCTCTGTC 58.086 42.308 0.00 0.00 0.00 3.51
3092 5110 7.037586 CCTCTCTCTATCTTATACTCCCTCTGT 60.038 44.444 0.00 0.00 0.00 3.41
3093 5111 7.338710 CCTCTCTCTATCTTATACTCCCTCTG 58.661 46.154 0.00 0.00 0.00 3.35
3094 5112 6.447084 CCCTCTCTCTATCTTATACTCCCTCT 59.553 46.154 0.00 0.00 0.00 3.69
3095 5113 6.353602 CCCCTCTCTCTATCTTATACTCCCTC 60.354 50.000 0.00 0.00 0.00 4.30
3096 5114 5.494706 CCCCTCTCTCTATCTTATACTCCCT 59.505 48.000 0.00 0.00 0.00 4.20
3097 5115 5.340528 CCCCCTCTCTCTATCTTATACTCCC 60.341 52.000 0.00 0.00 0.00 4.30
3098 5116 5.762279 CCCCCTCTCTCTATCTTATACTCC 58.238 50.000 0.00 0.00 0.00 3.85
3099 5117 5.198207 GCCCCCTCTCTCTATCTTATACTC 58.802 50.000 0.00 0.00 0.00 2.59
3100 5118 4.324719 CGCCCCCTCTCTCTATCTTATACT 60.325 50.000 0.00 0.00 0.00 2.12
3101 5119 3.949113 CGCCCCCTCTCTCTATCTTATAC 59.051 52.174 0.00 0.00 0.00 1.47
3124 5142 2.359975 GGAAGTGGTGAAGCCCGG 60.360 66.667 0.00 0.00 36.04 5.73
3125 5143 1.376037 GAGGAAGTGGTGAAGCCCG 60.376 63.158 0.00 0.00 36.04 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.