Multiple sequence alignment - TraesCS4A01G073500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G073500 chr4A 100.000 4377 0 0 4702 9078 72580046 72575670 0.000000e+00 8083.0
1 TraesCS4A01G073500 chr4A 100.000 2025 0 0 1 2025 72584747 72582723 0.000000e+00 3740.0
2 TraesCS4A01G073500 chr4A 100.000 2000 0 0 2473 4472 72582275 72580276 0.000000e+00 3694.0
3 TraesCS4A01G073500 chr4A 78.926 242 49 2 1199 1439 5839660 5839420 7.290000e-36 163.0
4 TraesCS4A01G073500 chr4D 92.766 3442 211 26 4702 8120 390908736 390905310 0.000000e+00 4942.0
5 TraesCS4A01G073500 chr4D 93.347 1999 95 18 2486 4460 390911030 390909046 0.000000e+00 2920.0
6 TraesCS4A01G073500 chr4D 94.300 1193 43 13 840 2019 390912953 390911773 0.000000e+00 1803.0
7 TraesCS4A01G073500 chr4D 90.909 583 29 7 289 849 390913683 390913103 0.000000e+00 761.0
8 TraesCS4A01G073500 chr4D 91.075 549 47 2 8531 9078 20528194 20527647 0.000000e+00 741.0
9 TraesCS4A01G073500 chr4D 79.916 239 46 2 1199 1436 464153138 464153375 3.370000e-39 174.0
10 TraesCS4A01G073500 chr4D 96.190 105 4 0 1 105 390913782 390913678 1.210000e-38 172.0
11 TraesCS4A01G073500 chr4B 90.023 2165 168 19 5923 8054 480653386 480651237 0.000000e+00 2758.0
12 TraesCS4A01G073500 chr4B 88.502 1983 149 37 2522 4472 480656454 480654519 0.000000e+00 2326.0
13 TraesCS4A01G073500 chr4B 92.570 1319 77 13 711 2019 480658356 480657049 0.000000e+00 1873.0
14 TraesCS4A01G073500 chr4B 90.068 1027 91 8 4705 5725 480654405 480653384 0.000000e+00 1321.0
15 TraesCS4A01G073500 chr4B 87.246 737 63 15 2 713 480684988 480684258 0.000000e+00 811.0
16 TraesCS4A01G073500 chr4B 90.257 544 49 3 8538 9078 115394679 115395221 0.000000e+00 708.0
17 TraesCS4A01G073500 chr4B 73.034 623 128 27 8 599 72672738 72673351 5.600000e-42 183.0
18 TraesCS4A01G073500 chr4B 79.916 239 46 2 1199 1436 579729970 579730207 3.370000e-39 174.0
19 TraesCS4A01G073500 chr3A 97.790 543 11 1 8536 9078 693120045 693119504 0.000000e+00 935.0
20 TraesCS4A01G073500 chr3A 97.238 543 14 1 8536 9078 20239644 20240185 0.000000e+00 918.0
21 TraesCS4A01G073500 chr5A 96.324 544 15 2 8539 9078 42688483 42689025 0.000000e+00 889.0
22 TraesCS4A01G073500 chr5B 94.679 545 27 2 8536 9078 111209589 111209045 0.000000e+00 845.0
23 TraesCS4A01G073500 chr6A 78.133 407 81 8 8536 8938 576226511 576226109 1.510000e-62 252.0
24 TraesCS4A01G073500 chr6D 76.805 457 85 17 8536 8983 28984349 28984793 4.240000e-58 237.0
25 TraesCS4A01G073500 chr2D 74.157 623 136 20 10 615 427341517 427342131 1.520000e-57 235.0
26 TraesCS4A01G073500 chr2D 73.143 175 44 3 5792 5964 5553292 5553465 9.840000e-05 60.2
27 TraesCS4A01G073500 chr2A 76.222 450 102 5 8536 8983 120677866 120677420 5.480000e-57 233.0
28 TraesCS4A01G073500 chr7B 82.143 112 18 2 5362 5472 703933177 703933287 2.700000e-15 95.3
29 TraesCS4A01G073500 chr5D 93.750 48 3 0 8171 8218 510162663 510162616 1.260000e-08 73.1
30 TraesCS4A01G073500 chrUn 92.500 40 3 0 7589 7628 42326062 42326023 3.540000e-04 58.4
31 TraesCS4A01G073500 chrUn 92.500 40 3 0 7589 7628 399338302 399338341 3.540000e-04 58.4
32 TraesCS4A01G073500 chr3B 97.059 34 1 0 6410 6443 130639061 130639094 3.540000e-04 58.4
33 TraesCS4A01G073500 chr3B 92.500 40 3 0 7589 7628 816171296 816171257 3.540000e-04 58.4
34 TraesCS4A01G073500 chr1D 87.234 47 6 0 8175 8221 420607576 420607622 5.000000e-03 54.7
35 TraesCS4A01G073500 chr1B 87.234 47 6 0 8175 8221 568769194 568769240 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G073500 chr4A 72575670 72584747 9077 True 5172.333333 8083 100.00000 1 9078 3 chr4A.!!$R2 9077
1 TraesCS4A01G073500 chr4D 390905310 390913782 8472 True 2119.600000 4942 93.50240 1 8120 5 chr4D.!!$R2 8119
2 TraesCS4A01G073500 chr4D 20527647 20528194 547 True 741.000000 741 91.07500 8531 9078 1 chr4D.!!$R1 547
3 TraesCS4A01G073500 chr4B 480651237 480658356 7119 True 2069.500000 2758 90.29075 711 8054 4 chr4B.!!$R2 7343
4 TraesCS4A01G073500 chr4B 480684258 480684988 730 True 811.000000 811 87.24600 2 713 1 chr4B.!!$R1 711
5 TraesCS4A01G073500 chr4B 115394679 115395221 542 False 708.000000 708 90.25700 8538 9078 1 chr4B.!!$F2 540
6 TraesCS4A01G073500 chr3A 693119504 693120045 541 True 935.000000 935 97.79000 8536 9078 1 chr3A.!!$R1 542
7 TraesCS4A01G073500 chr3A 20239644 20240185 541 False 918.000000 918 97.23800 8536 9078 1 chr3A.!!$F1 542
8 TraesCS4A01G073500 chr5A 42688483 42689025 542 False 889.000000 889 96.32400 8539 9078 1 chr5A.!!$F1 539
9 TraesCS4A01G073500 chr5B 111209045 111209589 544 True 845.000000 845 94.67900 8536 9078 1 chr5B.!!$R1 542
10 TraesCS4A01G073500 chr2D 427341517 427342131 614 False 235.000000 235 74.15700 10 615 1 chr2D.!!$F2 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 185 0.028642 ATCCCCCTGCCTAAGACCAT 60.029 55.0 0.00 0.00 0.00 3.55 F
587 612 0.380378 GCAAGAACACGAAGTTGGCA 59.620 50.0 2.93 0.00 41.61 4.92 F
1084 1272 0.521867 CATCGTGGAGCGCATTGTTG 60.522 55.0 11.47 0.00 41.07 3.33 F
2767 3257 0.251165 GAAAGTGGCACCCCTAAGCA 60.251 55.0 15.27 0.00 0.00 3.91 F
2784 3274 0.319813 GCAATGTCCCCACTTTGTGC 60.320 55.0 0.00 0.00 39.04 4.57 F
2890 3382 0.532196 GGTGTATTGTCGGGGCTAGC 60.532 60.0 6.04 6.04 0.00 3.42 F
4742 5338 1.271856 TGAAGATGCGGGAGTGGTAA 58.728 50.0 0.00 0.00 0.00 2.85 F
5629 6231 0.615850 GGTGGAGAACTTAGCAGCCT 59.384 55.0 0.00 0.00 0.00 4.58 F
6453 7073 0.178068 ACATGAGAGCGCCCGTAATT 59.822 50.0 2.29 0.00 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2158 0.110238 CAAGGCACCGTCGTTTGATG 60.110 55.000 0.00 0.0 0.00 3.07 R
2479 2683 0.403271 ATGCCAGAAGGTCACAAGCT 59.597 50.000 0.00 0.0 37.19 3.74 R
2784 3274 0.167470 TAGACGAAGCCTTGACGACG 59.833 55.000 0.00 0.0 0.00 5.12 R
4718 5314 1.815421 CTCCCGCATCTTCAACCCG 60.815 63.158 0.00 0.0 0.00 5.28 R
4764 5360 2.643551 CTGTGAACACCTGGTTGAAGT 58.356 47.619 0.00 0.0 40.63 3.01 R
4795 5391 0.179000 CCTCCGCTTTGGCATCTACT 59.821 55.000 0.00 0.0 38.60 2.57 R
6439 7059 0.393077 AGCATAATTACGGGCGCTCT 59.607 50.000 5.36 0.0 0.00 4.09 R
6728 7352 1.028130 CTCATCCTCGCAGCAGTAGA 58.972 55.000 0.00 0.0 0.00 2.59 R
8276 8918 0.036952 AACGAGACACAGGATGCAGG 60.037 55.000 0.00 0.0 42.53 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.036084 ACAAAGACCGCAGCGTCG 61.036 61.111 15.05 1.17 37.85 5.12
36 37 3.208884 AAAGACCGCAGCGTCGTCT 62.209 57.895 17.91 17.91 37.85 4.18
108 110 2.222027 AGACCTTTTCGAGTTGCCAAG 58.778 47.619 0.00 0.00 0.00 3.61
109 111 0.668535 ACCTTTTCGAGTTGCCAAGC 59.331 50.000 0.00 0.00 0.00 4.01
136 138 0.177141 TTTAAGCAGGGGGTCGATCG 59.823 55.000 9.36 9.36 0.00 3.69
151 153 1.394917 CGATCGCAAGGACAAAAGGAG 59.605 52.381 0.26 0.00 38.47 3.69
183 185 0.028642 ATCCCCCTGCCTAAGACCAT 60.029 55.000 0.00 0.00 0.00 3.55
236 241 5.465051 CCATCGAGAAGAATACGTGATGAT 58.535 41.667 0.00 0.00 35.03 2.45
253 258 6.516360 CGTGATGATGATGAGGATAACAGAGT 60.516 42.308 0.00 0.00 0.00 3.24
268 273 2.225091 ACAGAGTGGCAATCCAATTCCA 60.225 45.455 11.86 0.00 45.53 3.53
325 330 9.084533 GAGGTCAAGAATATACTCCTACTTGAT 57.915 37.037 0.00 0.00 43.04 2.57
343 348 3.589988 TGATCGAGTCAAAAGCCTTCTC 58.410 45.455 0.00 0.00 32.78 2.87
392 397 1.615392 GTCTTGCATTTGTGGAGCCTT 59.385 47.619 0.00 0.00 0.00 4.35
434 439 0.447406 TGAAATTGCCGTCGATGCTG 59.553 50.000 10.66 0.00 0.00 4.41
493 518 3.567397 AGCGTATGAAGAGGACATAGGT 58.433 45.455 0.00 0.00 37.96 3.08
580 605 2.159170 CCTTTTTGGGCAAGAACACGAA 60.159 45.455 0.00 0.00 0.00 3.85
587 612 0.380378 GCAAGAACACGAAGTTGGCA 59.620 50.000 2.93 0.00 41.61 4.92
649 674 9.418045 GAACTAAAGCATTAGATAGTCCTCATC 57.582 37.037 15.27 0.00 40.90 2.92
680 705 4.317359 TGGTTGCATCACCATCCG 57.683 55.556 6.14 0.00 42.27 4.18
696 721 1.243902 TCCGTCAAGTTTGCAATCCC 58.756 50.000 0.00 0.00 0.00 3.85
771 798 7.331687 AGTCTCAAAAGAAAAACAACCAATGTG 59.668 33.333 0.00 0.00 36.27 3.21
773 800 8.040132 TCTCAAAAGAAAAACAACCAATGTGAT 58.960 29.630 0.00 0.00 42.99 3.06
801 828 3.879892 GCTTCTAGCTTAGTTTGGGATGG 59.120 47.826 0.00 0.00 38.45 3.51
988 1176 8.561536 TCCCTTGACTGGAGTATTATTATCAA 57.438 34.615 0.00 0.00 0.00 2.57
989 1177 8.429641 TCCCTTGACTGGAGTATTATTATCAAC 58.570 37.037 0.00 0.00 0.00 3.18
990 1178 7.661847 CCCTTGACTGGAGTATTATTATCAACC 59.338 40.741 0.00 0.00 0.00 3.77
991 1179 7.661847 CCTTGACTGGAGTATTATTATCAACCC 59.338 40.741 0.00 0.00 0.00 4.11
992 1180 6.755206 TGACTGGAGTATTATTATCAACCCG 58.245 40.000 0.00 0.00 0.00 5.28
993 1181 5.548406 ACTGGAGTATTATTATCAACCCGC 58.452 41.667 0.00 0.00 0.00 6.13
1084 1272 0.521867 CATCGTGGAGCGCATTGTTG 60.522 55.000 11.47 0.00 41.07 3.33
1440 1628 2.438021 ACAAAGAGTGGCTGGTAAGTCA 59.562 45.455 0.00 0.00 35.02 3.41
1455 1643 8.135529 GCTGGTAAGTCAGTCATTTTACTTTTT 58.864 33.333 0.00 0.00 37.12 1.94
1484 1682 7.401060 TTGGTTTATATATGGGTCCATCTGT 57.599 36.000 5.67 0.00 37.82 3.41
1511 1713 4.006319 AGGAGTAGCAACTTGAAAGCATC 58.994 43.478 0.00 0.00 35.56 3.91
1594 1796 1.879575 ATCTACCCTGCTTGGCACTA 58.120 50.000 0.00 0.00 33.79 2.74
1640 1842 9.603921 AATGTGAAACTTTCATCAATTTTGACT 57.396 25.926 7.47 0.00 42.47 3.41
1662 1864 0.759436 GCCCGGACTCCTTCCTATGA 60.759 60.000 0.73 0.00 43.25 2.15
1669 1871 1.342076 ACTCCTTCCTATGACGGCTCA 60.342 52.381 0.00 0.00 30.07 4.26
1670 1872 1.967066 CTCCTTCCTATGACGGCTCAT 59.033 52.381 0.00 0.00 40.47 2.90
1708 1911 0.530870 GGGCATTCCGTCTAGAGTGC 60.531 60.000 0.00 0.86 45.78 4.40
1764 1967 0.551396 GGAGTTATGGGGGTCTTGGG 59.449 60.000 0.00 0.00 0.00 4.12
1780 1983 1.080093 GGGACGCAACTCGACATCA 60.080 57.895 0.00 0.00 41.67 3.07
1864 2068 2.472909 GCCGAACCCTGCATGCTAC 61.473 63.158 20.33 3.12 0.00 3.58
1915 2119 4.011966 TGATCATGTGCTTCTGAAGTGT 57.988 40.909 17.97 0.61 0.00 3.55
1939 2143 4.154195 GTGTTTGCGTGAGAGATTTGGTAT 59.846 41.667 0.00 0.00 0.00 2.73
1954 2158 7.668492 AGATTTGGTATCGTATCTTACTTCCC 58.332 38.462 0.00 0.00 0.00 3.97
1998 2202 1.226435 CTCTACGTGCGGACTCAGC 60.226 63.158 5.27 0.00 0.00 4.26
2012 2216 2.809601 CAGCAGTACCACGACGCC 60.810 66.667 0.00 0.00 0.00 5.68
2588 3075 4.635699 AGAAGAAAACCCGGTGTATCTT 57.364 40.909 16.72 16.72 36.50 2.40
2592 3079 3.071892 AGAAAACCCGGTGTATCTTGTGA 59.928 43.478 0.00 0.00 0.00 3.58
2663 3150 3.307199 CGTCCATTGGTTACAACTAGGGT 60.307 47.826 1.86 0.00 39.87 4.34
2664 3151 4.259356 GTCCATTGGTTACAACTAGGGTC 58.741 47.826 1.86 0.00 39.87 4.46
2665 3152 3.055675 TCCATTGGTTACAACTAGGGTCG 60.056 47.826 1.86 0.00 39.87 4.79
2666 3153 3.055675 CCATTGGTTACAACTAGGGTCGA 60.056 47.826 0.00 0.00 39.87 4.20
2667 3154 3.947910 TTGGTTACAACTAGGGTCGAG 57.052 47.619 0.00 0.00 0.00 4.04
2668 3155 3.159213 TGGTTACAACTAGGGTCGAGA 57.841 47.619 0.00 0.00 0.00 4.04
2669 3156 2.821969 TGGTTACAACTAGGGTCGAGAC 59.178 50.000 0.00 0.00 0.00 3.36
2696 3183 1.069049 GCAAGTGAGGTGGCATTTGTT 59.931 47.619 0.00 0.00 37.67 2.83
2714 3204 0.541063 TTCGAGGGTGCTGGTGTCTA 60.541 55.000 0.00 0.00 0.00 2.59
2715 3205 0.324368 TCGAGGGTGCTGGTGTCTAT 60.324 55.000 0.00 0.00 0.00 1.98
2727 3217 2.754552 TGGTGTCTATGCAAATGCCTTC 59.245 45.455 2.46 0.00 41.18 3.46
2750 3240 3.997762 CCGGTATTATCGGTCCATTGAA 58.002 45.455 7.24 0.00 42.33 2.69
2767 3257 0.251165 GAAAGTGGCACCCCTAAGCA 60.251 55.000 15.27 0.00 0.00 3.91
2783 3273 1.331214 AGCAATGTCCCCACTTTGTG 58.669 50.000 0.00 0.00 39.04 3.33
2784 3274 0.319813 GCAATGTCCCCACTTTGTGC 60.320 55.000 0.00 0.00 39.04 4.57
2795 3287 1.082756 CTTTGTGCGTCGTCAAGGC 60.083 57.895 0.00 0.00 39.25 4.35
2847 3339 5.528043 TGATTTAACATGTTGTGGCAACT 57.472 34.783 21.42 1.06 37.61 3.16
2890 3382 0.532196 GGTGTATTGTCGGGGCTAGC 60.532 60.000 6.04 6.04 0.00 3.42
3027 3519 7.119387 TCTTCATCTGAACAGACTCCTACATA 58.881 38.462 6.67 0.00 40.75 2.29
3032 3524 6.010850 TCTGAACAGACTCCTACATAGTTGT 58.989 40.000 0.00 0.00 34.60 3.32
3104 3596 2.622942 GGCTTTCACAATCTGGTGTTGA 59.377 45.455 0.00 0.00 39.76 3.18
3148 3640 3.938963 TGTGCGGGATGAGTTTTCTATTC 59.061 43.478 0.00 0.00 0.00 1.75
3270 3766 8.160521 TCCGAAATCAGAAAGTTCAAAATACA 57.839 30.769 0.00 0.00 0.00 2.29
3286 3782 9.541143 TTCAAAATACAAAAGGTTGGAATTCTC 57.459 29.630 5.23 0.00 39.22 2.87
3342 3848 2.554142 AGTTGCAGCAAAAAGAAAGCC 58.446 42.857 10.11 0.00 0.00 4.35
3345 3851 1.560004 GCAGCAAAAAGAAAGCCGGC 61.560 55.000 21.89 21.89 0.00 6.13
3403 3911 5.720371 CACAACTTTTTGGGTATGGATCA 57.280 39.130 0.00 0.00 37.00 2.92
3471 3979 3.614698 CTTTGGGGCAGCGGCAAA 61.615 61.111 11.88 1.83 43.71 3.68
3514 4022 4.929211 TGGGTCATCATATATTTTCGCTCG 59.071 41.667 0.00 0.00 0.00 5.03
3613 4123 2.973945 AGGACCTTTGCATAGACGAAC 58.026 47.619 5.65 0.00 0.00 3.95
3835 4346 7.592533 CGGTAGCCAATTTGAGATTCATTATTG 59.407 37.037 0.00 0.00 32.86 1.90
3836 4347 8.416329 GGTAGCCAATTTGAGATTCATTATTGT 58.584 33.333 0.00 1.63 31.98 2.71
3923 4438 9.216117 GTATACCACAACTTTCACTTTAGTCAT 57.784 33.333 0.00 0.00 0.00 3.06
4189 4712 3.520290 TCACGTTATGATGAGGGTGAC 57.480 47.619 0.00 0.00 29.99 3.67
4228 4751 6.218746 TCTTTTTCAGTTCGGTAGTACCTTC 58.781 40.000 17.29 7.34 35.66 3.46
4270 4793 9.401058 TCTCCCTTCTTCAAATTCATTAATCTC 57.599 33.333 0.00 0.00 0.00 2.75
4284 4812 8.926092 TTCATTAATCTCGAAGGATCTAGAGA 57.074 34.615 0.00 10.58 42.93 3.10
4298 4826 6.162600 AGGATCTAGAGAGGGGTAAAGTAAGT 59.837 42.308 0.00 0.00 0.00 2.24
4367 4895 7.273815 CGCGGATAAAGGAAGATCTTTAGATAC 59.726 40.741 9.87 0.00 40.97 2.24
4461 4989 9.793259 AAGAAATGGTAGAATTAACTGAAGACA 57.207 29.630 0.00 0.00 0.00 3.41
4466 4994 7.331026 TGGTAGAATTAACTGAAGACATGGAG 58.669 38.462 0.00 0.00 0.00 3.86
4742 5338 1.271856 TGAAGATGCGGGAGTGGTAA 58.728 50.000 0.00 0.00 0.00 2.85
4764 5360 8.564574 GGTAAACTGTACAAAGAACATCAATGA 58.435 33.333 0.00 0.00 0.00 2.57
4795 5391 2.753452 GGTGTTCACAGGTCTATCTCGA 59.247 50.000 5.32 0.00 0.00 4.04
4856 5452 4.575885 TCTACTCACTTTGTTACCATGGC 58.424 43.478 13.04 0.00 0.00 4.40
4862 5458 2.377193 ACTTTGTTACCATGGCCCTACA 59.623 45.455 13.04 8.16 0.00 2.74
4884 5480 5.986135 ACACAAACTTCATCACTACTCTGAC 59.014 40.000 0.00 0.00 0.00 3.51
4891 5487 4.089361 TCATCACTACTCTGACACATGGT 58.911 43.478 0.00 0.00 0.00 3.55
4912 5508 6.957631 TGGTCAGAATACCATCATTGTAAGT 58.042 36.000 0.00 0.00 44.68 2.24
4914 5510 6.260936 GGTCAGAATACCATCATTGTAAGTGG 59.739 42.308 0.00 0.00 39.50 4.00
5082 5682 3.454812 GTGTTATCACTATGAGTGGGGGT 59.545 47.826 6.77 0.00 45.94 4.95
5083 5683 4.080526 GTGTTATCACTATGAGTGGGGGTT 60.081 45.833 6.77 0.00 45.94 4.11
5093 5693 3.533146 TGAGTGGGGGTTACATAAGGAA 58.467 45.455 0.00 0.00 0.00 3.36
5138 5738 1.535687 AAGGTACCGCCAGTCTGGT 60.536 57.895 20.24 3.21 40.46 4.00
5168 5768 8.537049 TCTAAATTCAACAATTTTGCTGATGG 57.463 30.769 0.00 0.00 41.56 3.51
5225 5825 5.918608 AGCGTGGATATTAGACAAAGTGAT 58.081 37.500 0.00 0.00 0.00 3.06
5230 5830 7.593273 CGTGGATATTAGACAAAGTGATCTCTC 59.407 40.741 0.00 0.00 0.00 3.20
5357 5959 9.212641 TGAAGATATCAAGAACAGAGTCAAAAG 57.787 33.333 5.32 0.00 34.30 2.27
5359 5961 9.566432 AAGATATCAAGAACAGAGTCAAAAGTT 57.434 29.630 5.32 0.00 0.00 2.66
5424 6026 7.340487 AGGGTTAGGAGAAATCTAATTTTGCTG 59.660 37.037 0.00 0.00 31.47 4.41
5427 6029 5.831103 AGGAGAAATCTAATTTTGCTGGGA 58.169 37.500 0.00 0.00 31.47 4.37
5432 6034 6.721208 AGAAATCTAATTTTGCTGGGAGAACA 59.279 34.615 0.00 0.00 31.47 3.18
5477 6079 1.205893 GGCGGACAGAGACAAGAAGAT 59.794 52.381 0.00 0.00 0.00 2.40
5480 6082 3.768406 CGGACAGAGACAAGAAGATCAG 58.232 50.000 0.00 0.00 0.00 2.90
5525 6127 4.944317 CCTTGTGATAAAGGGAAAGAGGAC 59.056 45.833 0.00 0.00 42.68 3.85
5546 6148 4.805219 ACCAAGAACAATTTAACCATCGC 58.195 39.130 0.00 0.00 0.00 4.58
5593 6195 4.664150 TGTGTGGCGATATTATCAGTCA 57.336 40.909 4.63 2.45 0.00 3.41
5629 6231 0.615850 GGTGGAGAACTTAGCAGCCT 59.384 55.000 0.00 0.00 0.00 4.58
5630 6232 1.406205 GGTGGAGAACTTAGCAGCCTC 60.406 57.143 0.00 0.00 0.00 4.70
5638 6240 1.380515 TTAGCAGCCTCCTCGAGCT 60.381 57.895 6.99 2.23 40.89 4.09
5718 6320 3.473625 ACAAGTTCAAGACGGTTAAGGG 58.526 45.455 0.00 0.00 0.00 3.95
5735 6337 4.559502 GCATATTCGCCAGGTGGT 57.440 55.556 0.00 0.00 37.57 4.16
5782 6384 5.269991 ACATGTATAGGGCTACATATCCGT 58.730 41.667 0.00 0.00 39.69 4.69
5783 6385 5.720041 ACATGTATAGGGCTACATATCCGTT 59.280 40.000 0.00 0.00 39.69 4.44
5795 6397 7.352739 GCTACATATCCGTTTTTAAGATGGTG 58.647 38.462 0.00 0.00 0.00 4.17
5797 6399 7.316544 ACATATCCGTTTTTAAGATGGTGAC 57.683 36.000 0.00 0.00 0.00 3.67
5805 6407 3.334583 TTAAGATGGTGACTGGAGCAC 57.665 47.619 0.00 0.00 35.56 4.40
5827 6429 3.190738 TTCTTGCCCGGGGTGTGAG 62.191 63.158 25.28 7.76 0.00 3.51
5840 6442 2.342179 GGTGTGAGCTCTTGTTCTAGC 58.658 52.381 16.19 0.00 39.08 3.42
5882 6484 3.057596 CCACCACAAACTTGCGTCATTAT 60.058 43.478 0.00 0.00 0.00 1.28
5895 6497 3.126858 GCGTCATTATCTTGTTGAAGGCA 59.873 43.478 0.00 0.00 0.00 4.75
5907 6509 3.585289 TGTTGAAGGCATGGTACTTCCTA 59.415 43.478 0.00 0.00 41.78 2.94
5984 6586 1.134995 CCGTCTCTAGCTGCACATGAA 60.135 52.381 0.00 0.00 0.00 2.57
6017 6619 4.508461 CTTCATGAAGGCATTGTTGTGA 57.492 40.909 25.14 0.00 34.87 3.58
6063 6665 8.408601 AGGTGTCAATTTCATATCTTACAATGC 58.591 33.333 0.00 0.00 0.00 3.56
6068 6670 9.541143 TCAATTTCATATCTTACAATGCGTCTA 57.459 29.630 0.00 0.00 0.00 2.59
6116 6718 5.989551 AAGTTGTTGATGTTTTTGGCATC 57.010 34.783 0.00 0.00 42.10 3.91
6121 6723 3.724508 TGATGTTTTTGGCATCGTTGT 57.275 38.095 0.00 0.00 44.02 3.32
6126 6728 3.119316 TGTTTTTGGCATCGTTGTCTTGT 60.119 39.130 0.00 0.00 0.00 3.16
6176 6778 3.181503 GCATTGCAATGATATAGAGGCCG 60.182 47.826 37.36 11.32 38.70 6.13
6191 6793 1.101635 GGCCGGGCATTCTAACCTTC 61.102 60.000 25.33 0.00 0.00 3.46
6258 6878 8.237267 GTGTAAACCATGCCTATCATATAAAGC 58.763 37.037 0.00 0.00 33.19 3.51
6260 6880 4.517285 ACCATGCCTATCATATAAAGCCG 58.483 43.478 0.00 0.00 33.19 5.52
6262 6882 4.943705 CCATGCCTATCATATAAAGCCGTT 59.056 41.667 0.00 0.00 33.19 4.44
6269 6889 3.202906 TCATATAAAGCCGTTGCAGGAC 58.797 45.455 0.00 0.00 41.13 3.85
6283 6903 3.531538 TGCAGGACAACCGAAATAGATC 58.468 45.455 0.00 0.00 41.83 2.75
6284 6904 2.540101 GCAGGACAACCGAAATAGATCG 59.460 50.000 0.00 0.00 42.37 3.69
6298 6918 1.645034 AGATCGCACCAAGTTGATCG 58.355 50.000 3.87 4.85 41.57 3.69
6315 6935 3.452264 TGATCGGGAAGACACAAGATCAT 59.548 43.478 0.00 0.00 39.34 2.45
6330 6950 3.877559 AGATCATGAAAGCGACAATCCA 58.122 40.909 0.00 0.00 0.00 3.41
6385 7005 3.982475 AGTGTGATGATCGATATGCGTT 58.018 40.909 0.00 0.00 41.80 4.84
6387 7007 5.528870 AGTGTGATGATCGATATGCGTTTA 58.471 37.500 0.00 0.00 41.80 2.01
6404 7024 4.558095 GCGTTTAATGGCCTCGATAGACTA 60.558 45.833 3.32 0.00 42.67 2.59
6408 7028 7.148787 CGTTTAATGGCCTCGATAGACTAATTC 60.149 40.741 3.32 0.00 42.67 2.17
6426 7046 8.678593 ACTAATTCTCGATCTGTACTATGTCA 57.321 34.615 0.00 0.00 0.00 3.58
6453 7073 0.178068 ACATGAGAGCGCCCGTAATT 59.822 50.000 2.29 0.00 0.00 1.40
6459 7079 1.202651 AGAGCGCCCGTAATTATGCTT 60.203 47.619 2.29 0.00 31.88 3.91
6465 7085 3.335579 GCCCGTAATTATGCTTAGGGAG 58.664 50.000 1.26 0.00 38.38 4.30
6472 7092 8.746530 CCGTAATTATGCTTAGGGAGTCTAATA 58.253 37.037 0.00 0.00 38.38 0.98
6573 7193 8.999431 ACTTCGTCAACTAATCATGTTAAACAT 58.001 29.630 0.00 0.00 39.91 2.71
6580 7200 8.655970 CAACTAATCATGTTAAACATCGAGACA 58.344 33.333 0.00 0.00 36.53 3.41
6681 7305 1.612726 GGAGTGATGCAGGCTGAAGTT 60.613 52.381 20.86 0.00 0.00 2.66
6728 7352 0.036952 CACCTGGTCAAGCTGATCGT 60.037 55.000 0.00 0.00 27.66 3.73
6753 7377 1.514553 CTGCGAGGATGAGCACAGA 59.485 57.895 0.00 0.00 38.59 3.41
6821 7445 9.061435 GCATCTCTATAAGAGTAAGCCAAATTT 57.939 33.333 3.98 0.00 42.83 1.82
6955 7592 9.596308 ACAATATACATAGTGATACTACCACCA 57.404 33.333 3.86 0.00 32.84 4.17
6966 7603 1.838077 ACTACCACCAACCCATAGCTC 59.162 52.381 0.00 0.00 0.00 4.09
7021 7659 1.477923 GGGAAACTGCAGGGTACACAA 60.478 52.381 19.93 0.00 0.00 3.33
7041 7679 3.126001 ACATCATTGTCGTGGTCAACT 57.874 42.857 0.00 0.00 0.00 3.16
7061 7699 3.085208 GGCTGAAGATCGCCATTGA 57.915 52.632 4.64 0.00 45.59 2.57
7102 7740 1.078918 CTCCATGACGCTGCCAAGA 60.079 57.895 0.00 0.00 0.00 3.02
7156 7794 1.731720 ACTACTCGACTCGGTACACC 58.268 55.000 0.00 0.00 0.00 4.16
7172 7810 1.985159 ACACCCTTGGCTCTCATGTAA 59.015 47.619 0.00 0.00 0.00 2.41
7176 7814 3.209410 CCCTTGGCTCTCATGTAATCAC 58.791 50.000 0.00 0.00 0.00 3.06
7188 7826 7.320399 TCTCATGTAATCACGTCACAAACTAT 58.680 34.615 0.00 0.00 0.00 2.12
7252 7890 3.130340 ACAACATTCGTGGCAAACTCTTT 59.870 39.130 0.00 0.00 0.00 2.52
7289 7927 7.797123 CCTTTTTCGATTGTGACAAACTACTAC 59.203 37.037 0.62 0.00 0.00 2.73
7293 7931 9.701098 TTTCGATTGTGACAAACTACTACTATT 57.299 29.630 0.62 0.00 0.00 1.73
7338 7976 9.908152 GTAGCAAATTAGTGGTTAATTGACTTT 57.092 29.630 0.00 0.00 40.29 2.66
7364 8003 9.303116 TCTTAAATTTTGTAGGATTACCAAGCA 57.697 29.630 0.00 0.00 38.94 3.91
7451 8090 1.750399 CATGGGCACACAGGGCTAC 60.750 63.158 0.00 0.00 0.00 3.58
7475 8114 4.502087 GCTGCACCAGAGTATATCATGACA 60.502 45.833 0.00 0.00 32.44 3.58
7495 8135 9.599866 CATGACAGGTACATAGACTTGATAAAA 57.400 33.333 0.00 0.00 31.24 1.52
7521 8161 5.897377 AGCAGAAGTTGTACAAAGTTGTT 57.103 34.783 10.51 2.41 42.35 2.83
7621 8261 3.818210 TGTATAGTTTTGGTGTGGTGCTG 59.182 43.478 0.00 0.00 0.00 4.41
7637 8277 1.230635 GCTGCTGGAGCTTTTGACGA 61.231 55.000 14.33 0.00 45.21 4.20
7888 8528 2.713967 GCCGTTGCTTGCCATGGAT 61.714 57.895 18.40 0.00 33.53 3.41
7948 8588 4.755123 CCGGAGAACAAATGACTACAACTT 59.245 41.667 0.00 0.00 0.00 2.66
8140 8782 7.707624 ATTTCTCTCAAACATTAAGATGCCA 57.292 32.000 0.00 0.00 36.72 4.92
8141 8783 6.748333 TTCTCTCAAACATTAAGATGCCAG 57.252 37.500 0.00 0.00 36.72 4.85
8142 8784 6.053632 TCTCTCAAACATTAAGATGCCAGA 57.946 37.500 0.00 0.00 36.72 3.86
8143 8785 6.656902 TCTCTCAAACATTAAGATGCCAGAT 58.343 36.000 0.00 0.00 36.72 2.90
8144 8786 6.765036 TCTCTCAAACATTAAGATGCCAGATC 59.235 38.462 0.00 0.00 36.72 2.75
8145 8787 6.417258 TCTCAAACATTAAGATGCCAGATCA 58.583 36.000 0.00 0.00 36.72 2.92
8146 8788 7.058525 TCTCAAACATTAAGATGCCAGATCAT 58.941 34.615 0.00 0.00 36.72 2.45
8147 8789 7.228108 TCTCAAACATTAAGATGCCAGATCATC 59.772 37.037 0.00 0.00 42.32 2.92
8148 8790 6.829811 TCAAACATTAAGATGCCAGATCATCA 59.170 34.615 6.53 0.00 43.94 3.07
8149 8791 7.504574 TCAAACATTAAGATGCCAGATCATCAT 59.495 33.333 6.53 0.00 43.94 2.45
8150 8792 8.789762 CAAACATTAAGATGCCAGATCATCATA 58.210 33.333 6.53 0.00 43.94 2.15
8151 8793 7.918536 ACATTAAGATGCCAGATCATCATAC 57.081 36.000 6.53 0.00 43.94 2.39
8152 8794 7.455891 ACATTAAGATGCCAGATCATCATACA 58.544 34.615 6.53 0.00 43.94 2.29
8153 8795 7.940688 ACATTAAGATGCCAGATCATCATACAA 59.059 33.333 6.53 0.00 43.94 2.41
8154 8796 7.974482 TTAAGATGCCAGATCATCATACAAG 57.026 36.000 6.53 0.00 43.94 3.16
8155 8797 4.325119 AGATGCCAGATCATCATACAAGC 58.675 43.478 6.53 0.00 43.94 4.01
8156 8798 3.564053 TGCCAGATCATCATACAAGCA 57.436 42.857 0.00 0.00 0.00 3.91
8157 8799 4.094830 TGCCAGATCATCATACAAGCAT 57.905 40.909 0.00 0.00 0.00 3.79
8158 8800 3.818773 TGCCAGATCATCATACAAGCATG 59.181 43.478 0.00 0.00 0.00 4.06
8159 8801 3.366070 GCCAGATCATCATACAAGCATGC 60.366 47.826 10.51 10.51 0.00 4.06
8160 8802 3.818773 CCAGATCATCATACAAGCATGCA 59.181 43.478 21.98 0.00 0.00 3.96
8161 8803 4.459337 CCAGATCATCATACAAGCATGCAT 59.541 41.667 21.98 4.57 0.00 3.96
8162 8804 5.393962 CAGATCATCATACAAGCATGCATG 58.606 41.667 22.70 22.70 32.48 4.06
8163 8805 5.181245 CAGATCATCATACAAGCATGCATGA 59.819 40.000 30.64 22.49 42.17 3.07
8164 8806 5.768164 AGATCATCATACAAGCATGCATGAA 59.232 36.000 30.64 10.58 41.48 2.57
8165 8807 5.838531 TCATCATACAAGCATGCATGAAA 57.161 34.783 30.64 15.99 41.48 2.69
8166 8808 6.210287 TCATCATACAAGCATGCATGAAAA 57.790 33.333 30.64 13.64 41.48 2.29
8167 8809 6.631962 TCATCATACAAGCATGCATGAAAAA 58.368 32.000 30.64 10.90 41.48 1.94
8227 8869 9.988815 AGTTATGTCATATCTAAGTTGTCCATC 57.011 33.333 2.15 0.00 0.00 3.51
8228 8870 9.764363 GTTATGTCATATCTAAGTTGTCCATCA 57.236 33.333 0.00 0.00 0.00 3.07
8229 8871 9.764363 TTATGTCATATCTAAGTTGTCCATCAC 57.236 33.333 0.00 0.00 0.00 3.06
8230 8872 7.181569 TGTCATATCTAAGTTGTCCATCACA 57.818 36.000 0.00 0.00 0.00 3.58
8231 8873 7.041721 TGTCATATCTAAGTTGTCCATCACAC 58.958 38.462 0.00 0.00 33.41 3.82
8232 8874 6.199154 GTCATATCTAAGTTGTCCATCACACG 59.801 42.308 0.00 0.00 33.41 4.49
8233 8875 4.801330 ATCTAAGTTGTCCATCACACGA 57.199 40.909 0.00 0.00 33.41 4.35
8234 8876 4.801330 TCTAAGTTGTCCATCACACGAT 57.199 40.909 0.00 0.00 33.41 3.73
8235 8877 5.147330 TCTAAGTTGTCCATCACACGATT 57.853 39.130 0.00 0.00 33.41 3.34
8236 8878 6.275494 TCTAAGTTGTCCATCACACGATTA 57.725 37.500 0.00 0.00 33.41 1.75
8237 8879 6.693466 TCTAAGTTGTCCATCACACGATTAA 58.307 36.000 0.00 0.00 33.41 1.40
8238 8880 7.156000 TCTAAGTTGTCCATCACACGATTAAA 58.844 34.615 0.00 0.00 33.41 1.52
8239 8881 5.862924 AGTTGTCCATCACACGATTAAAG 57.137 39.130 0.00 0.00 33.41 1.85
8240 8882 4.154195 AGTTGTCCATCACACGATTAAAGC 59.846 41.667 0.00 0.00 33.41 3.51
8241 8883 3.937814 TGTCCATCACACGATTAAAGCT 58.062 40.909 0.00 0.00 0.00 3.74
8242 8884 3.684305 TGTCCATCACACGATTAAAGCTG 59.316 43.478 0.00 0.00 0.00 4.24
8243 8885 2.677836 TCCATCACACGATTAAAGCTGC 59.322 45.455 0.00 0.00 0.00 5.25
8244 8886 2.419673 CCATCACACGATTAAAGCTGCA 59.580 45.455 1.02 0.00 0.00 4.41
8245 8887 3.119884 CCATCACACGATTAAAGCTGCAA 60.120 43.478 1.02 0.00 0.00 4.08
8246 8888 3.811722 TCACACGATTAAAGCTGCAAG 57.188 42.857 1.02 0.00 0.00 4.01
8247 8889 3.398406 TCACACGATTAAAGCTGCAAGA 58.602 40.909 1.02 0.00 34.07 3.02
8248 8890 4.002982 TCACACGATTAAAGCTGCAAGAT 58.997 39.130 1.02 0.00 34.07 2.40
8250 8892 4.790140 CACACGATTAAAGCTGCAAGATTC 59.210 41.667 1.02 0.00 38.98 2.52
8251 8893 4.024438 CACGATTAAAGCTGCAAGATTCG 58.976 43.478 1.02 7.53 38.98 3.34
8252 8894 3.684788 ACGATTAAAGCTGCAAGATTCGT 59.315 39.130 1.02 8.17 38.98 3.85
8253 8895 4.024438 CGATTAAAGCTGCAAGATTCGTG 58.976 43.478 1.02 0.00 38.98 4.35
8254 8896 2.900122 TAAAGCTGCAAGATTCGTGC 57.100 45.000 16.36 16.36 38.98 5.34
8255 8897 0.953727 AAAGCTGCAAGATTCGTGCA 59.046 45.000 22.84 22.84 38.98 4.57
8256 8898 0.953727 AAGCTGCAAGATTCGTGCAA 59.046 45.000 24.00 11.17 38.98 4.08
8257 8899 1.337703 AAGCTGCAAGATTCGTGCAAA 59.662 42.857 24.00 6.59 38.98 3.68
8258 8900 2.223782 AAGCTGCAAGATTCGTGCAAAA 60.224 40.909 24.00 5.95 38.98 2.44
8259 8901 3.737663 AAGCTGCAAGATTCGTGCAAAAA 60.738 39.130 24.00 5.63 38.98 1.94
8280 8922 5.959652 AAATTGTTTTTGTTCGTACCTGC 57.040 34.783 0.00 0.00 0.00 4.85
8281 8923 4.640789 ATTGTTTTTGTTCGTACCTGCA 57.359 36.364 0.00 0.00 0.00 4.41
8282 8924 4.640789 TTGTTTTTGTTCGTACCTGCAT 57.359 36.364 0.00 0.00 0.00 3.96
8283 8925 4.217754 TGTTTTTGTTCGTACCTGCATC 57.782 40.909 0.00 0.00 0.00 3.91
8284 8926 3.003897 TGTTTTTGTTCGTACCTGCATCC 59.996 43.478 0.00 0.00 0.00 3.51
8285 8927 2.851263 TTTGTTCGTACCTGCATCCT 57.149 45.000 0.00 0.00 0.00 3.24
8286 8928 2.093306 TTGTTCGTACCTGCATCCTG 57.907 50.000 0.00 0.00 0.00 3.86
8287 8929 0.973632 TGTTCGTACCTGCATCCTGT 59.026 50.000 0.00 0.00 0.00 4.00
8288 8930 1.337728 TGTTCGTACCTGCATCCTGTG 60.338 52.381 0.00 0.00 0.00 3.66
8289 8931 0.973632 TTCGTACCTGCATCCTGTGT 59.026 50.000 0.00 0.00 0.00 3.72
8290 8932 0.530744 TCGTACCTGCATCCTGTGTC 59.469 55.000 0.00 0.00 0.00 3.67
8291 8933 0.532573 CGTACCTGCATCCTGTGTCT 59.467 55.000 0.00 0.00 0.00 3.41
8292 8934 1.469940 CGTACCTGCATCCTGTGTCTC 60.470 57.143 0.00 0.00 0.00 3.36
8293 8935 0.817654 TACCTGCATCCTGTGTCTCG 59.182 55.000 0.00 0.00 0.00 4.04
8294 8936 1.188219 ACCTGCATCCTGTGTCTCGT 61.188 55.000 0.00 0.00 0.00 4.18
8295 8937 0.036952 CCTGCATCCTGTGTCTCGTT 60.037 55.000 0.00 0.00 0.00 3.85
8296 8938 1.073964 CTGCATCCTGTGTCTCGTTG 58.926 55.000 0.00 0.00 0.00 4.10
8297 8939 0.392706 TGCATCCTGTGTCTCGTTGT 59.607 50.000 0.00 0.00 0.00 3.32
8298 8940 1.071605 GCATCCTGTGTCTCGTTGTC 58.928 55.000 0.00 0.00 0.00 3.18
8299 8941 1.337260 GCATCCTGTGTCTCGTTGTCT 60.337 52.381 0.00 0.00 0.00 3.41
8300 8942 2.868044 GCATCCTGTGTCTCGTTGTCTT 60.868 50.000 0.00 0.00 0.00 3.01
8301 8943 3.393800 CATCCTGTGTCTCGTTGTCTTT 58.606 45.455 0.00 0.00 0.00 2.52
8302 8944 3.536956 TCCTGTGTCTCGTTGTCTTTT 57.463 42.857 0.00 0.00 0.00 2.27
8303 8945 4.659111 TCCTGTGTCTCGTTGTCTTTTA 57.341 40.909 0.00 0.00 0.00 1.52
8304 8946 5.209818 TCCTGTGTCTCGTTGTCTTTTAT 57.790 39.130 0.00 0.00 0.00 1.40
8305 8947 5.607477 TCCTGTGTCTCGTTGTCTTTTATT 58.393 37.500 0.00 0.00 0.00 1.40
8306 8948 6.053005 TCCTGTGTCTCGTTGTCTTTTATTT 58.947 36.000 0.00 0.00 0.00 1.40
8307 8949 6.540914 TCCTGTGTCTCGTTGTCTTTTATTTT 59.459 34.615 0.00 0.00 0.00 1.82
8308 8950 7.066525 TCCTGTGTCTCGTTGTCTTTTATTTTT 59.933 33.333 0.00 0.00 0.00 1.94
8309 8951 8.339714 CCTGTGTCTCGTTGTCTTTTATTTTTA 58.660 33.333 0.00 0.00 0.00 1.52
8310 8952 9.370126 CTGTGTCTCGTTGTCTTTTATTTTTAG 57.630 33.333 0.00 0.00 0.00 1.85
8311 8953 8.885722 TGTGTCTCGTTGTCTTTTATTTTTAGT 58.114 29.630 0.00 0.00 0.00 2.24
8312 8954 9.712359 GTGTCTCGTTGTCTTTTATTTTTAGTT 57.288 29.630 0.00 0.00 0.00 2.24
8313 8955 9.710979 TGTCTCGTTGTCTTTTATTTTTAGTTG 57.289 29.630 0.00 0.00 0.00 3.16
8314 8956 9.712359 GTCTCGTTGTCTTTTATTTTTAGTTGT 57.288 29.630 0.00 0.00 0.00 3.32
8317 8959 9.843334 TCGTTGTCTTTTATTTTTAGTTGTTGT 57.157 25.926 0.00 0.00 0.00 3.32
8318 8960 9.879973 CGTTGTCTTTTATTTTTAGTTGTTGTG 57.120 29.630 0.00 0.00 0.00 3.33
8323 8965 9.710979 TCTTTTATTTTTAGTTGTTGTGTCTCG 57.289 29.630 0.00 0.00 0.00 4.04
8324 8966 9.498307 CTTTTATTTTTAGTTGTTGTGTCTCGT 57.502 29.630 0.00 0.00 0.00 4.18
8325 8967 9.843334 TTTTATTTTTAGTTGTTGTGTCTCGTT 57.157 25.926 0.00 0.00 0.00 3.85
8326 8968 8.829514 TTATTTTTAGTTGTTGTGTCTCGTTG 57.170 30.769 0.00 0.00 0.00 4.10
8327 8969 5.866335 TTTTAGTTGTTGTGTCTCGTTGT 57.134 34.783 0.00 0.00 0.00 3.32
8328 8970 5.459110 TTTAGTTGTTGTGTCTCGTTGTC 57.541 39.130 0.00 0.00 0.00 3.18
8329 8971 2.967362 AGTTGTTGTGTCTCGTTGTCA 58.033 42.857 0.00 0.00 0.00 3.58
8330 8972 2.930040 AGTTGTTGTGTCTCGTTGTCAG 59.070 45.455 0.00 0.00 0.00 3.51
8331 8973 1.934589 TGTTGTGTCTCGTTGTCAGG 58.065 50.000 0.00 0.00 0.00 3.86
8332 8974 0.582005 GTTGTGTCTCGTTGTCAGGC 59.418 55.000 0.00 0.00 0.00 4.85
8333 8975 0.531974 TTGTGTCTCGTTGTCAGGCC 60.532 55.000 0.00 0.00 0.00 5.19
8334 8976 2.022129 GTGTCTCGTTGTCAGGCCG 61.022 63.158 0.00 0.00 0.00 6.13
8335 8977 3.112709 GTCTCGTTGTCAGGCCGC 61.113 66.667 0.00 0.00 0.00 6.53
8336 8978 3.303135 TCTCGTTGTCAGGCCGCT 61.303 61.111 0.00 0.00 0.00 5.52
8337 8979 1.974875 TCTCGTTGTCAGGCCGCTA 60.975 57.895 0.00 0.00 0.00 4.26
8338 8980 1.517257 CTCGTTGTCAGGCCGCTAG 60.517 63.158 0.00 0.00 0.00 3.42
8339 8981 2.509336 CGTTGTCAGGCCGCTAGG 60.509 66.667 0.00 0.00 41.62 3.02
8340 8982 2.663196 GTTGTCAGGCCGCTAGGT 59.337 61.111 0.00 0.00 40.50 3.08
8341 8983 1.448013 GTTGTCAGGCCGCTAGGTC 60.448 63.158 0.00 0.00 44.17 3.85
8347 8989 4.716003 GGCCGCTAGGTCTTGTTT 57.284 55.556 0.00 0.00 39.58 2.83
8348 8990 2.942641 GGCCGCTAGGTCTTGTTTT 58.057 52.632 0.00 0.00 39.58 2.43
8349 8991 1.244816 GGCCGCTAGGTCTTGTTTTT 58.755 50.000 0.00 0.00 39.58 1.94
8369 9011 3.034924 TTTTTGAGACATGGCCGCT 57.965 47.368 0.00 0.00 0.00 5.52
8370 9012 1.327303 TTTTTGAGACATGGCCGCTT 58.673 45.000 0.00 0.00 0.00 4.68
8371 9013 0.597568 TTTTGAGACATGGCCGCTTG 59.402 50.000 0.00 0.00 0.00 4.01
8372 9014 1.243342 TTTGAGACATGGCCGCTTGG 61.243 55.000 0.00 0.00 0.00 3.61
8373 9015 2.045926 GAGACATGGCCGCTTGGT 60.046 61.111 0.00 0.00 34.16 3.67
8374 9016 2.045926 AGACATGGCCGCTTGGTC 60.046 61.111 0.00 0.84 38.10 4.02
8375 9017 2.045926 GACATGGCCGCTTGGTCT 60.046 61.111 0.00 0.00 38.57 3.85
8376 9018 1.675641 GACATGGCCGCTTGGTCTT 60.676 57.895 0.00 0.00 38.57 3.01
8377 9019 1.926511 GACATGGCCGCTTGGTCTTG 61.927 60.000 0.00 0.79 45.47 3.02
8378 9020 1.973281 CATGGCCGCTTGGTCTTGT 60.973 57.895 0.00 0.00 38.57 3.16
8379 9021 1.973281 ATGGCCGCTTGGTCTTGTG 60.973 57.895 0.00 0.00 38.57 3.33
8380 9022 2.594592 GGCCGCTTGGTCTTGTGT 60.595 61.111 0.00 0.00 33.30 3.72
8381 9023 2.617274 GGCCGCTTGGTCTTGTGTC 61.617 63.158 0.00 0.00 33.30 3.67
8382 9024 2.954753 GCCGCTTGGTCTTGTGTCG 61.955 63.158 0.00 0.00 34.16 4.35
8383 9025 2.551270 CGCTTGGTCTTGTGTCGC 59.449 61.111 0.00 0.00 0.00 5.19
8384 9026 2.551270 GCTTGGTCTTGTGTCGCG 59.449 61.111 0.00 0.00 0.00 5.87
8385 9027 2.954753 GCTTGGTCTTGTGTCGCGG 61.955 63.158 6.13 0.00 0.00 6.46
8386 9028 1.594293 CTTGGTCTTGTGTCGCGGT 60.594 57.895 6.13 0.00 0.00 5.68
8387 9029 1.153329 TTGGTCTTGTGTCGCGGTT 60.153 52.632 6.13 0.00 0.00 4.44
8388 9030 1.433053 TTGGTCTTGTGTCGCGGTTG 61.433 55.000 6.13 0.00 0.00 3.77
8389 9031 2.248431 GTCTTGTGTCGCGGTTGC 59.752 61.111 6.13 0.00 37.91 4.17
8410 9052 4.280019 GGTTTCCGCCCCCTGTGT 62.280 66.667 0.00 0.00 0.00 3.72
8411 9053 2.983592 GTTTCCGCCCCCTGTGTG 60.984 66.667 0.00 0.00 0.00 3.82
8412 9054 4.966787 TTTCCGCCCCCTGTGTGC 62.967 66.667 0.00 0.00 0.00 4.57
8419 9061 3.407967 CCCCTGTGTGCCCGGTAT 61.408 66.667 0.00 0.00 0.00 2.73
8420 9062 2.124736 CCCTGTGTGCCCGGTATG 60.125 66.667 0.00 0.00 0.00 2.39
8421 9063 2.124736 CCTGTGTGCCCGGTATGG 60.125 66.667 0.00 0.00 37.55 2.74
8422 9064 2.665089 CCTGTGTGCCCGGTATGGA 61.665 63.158 0.00 0.00 42.00 3.41
8423 9065 1.449601 CTGTGTGCCCGGTATGGAC 60.450 63.158 0.00 0.00 42.00 4.02
8424 9066 2.124860 GTGTGCCCGGTATGGACC 60.125 66.667 0.00 0.00 42.00 4.46
8425 9067 3.404438 TGTGCCCGGTATGGACCC 61.404 66.667 0.00 0.00 43.64 4.46
8426 9068 4.540735 GTGCCCGGTATGGACCCG 62.541 72.222 0.00 0.00 43.64 5.28
8428 9070 4.540735 GCCCGGTATGGACCCGTG 62.541 72.222 0.00 0.00 43.64 4.94
8429 9071 3.078836 CCCGGTATGGACCCGTGT 61.079 66.667 0.00 0.00 43.64 4.49
8430 9072 2.185867 CCGGTATGGACCCGTGTG 59.814 66.667 0.00 0.00 43.64 3.82
8431 9073 2.652095 CCGGTATGGACCCGTGTGT 61.652 63.158 0.00 0.00 43.64 3.72
8432 9074 1.294138 CGGTATGGACCCGTGTGTT 59.706 57.895 0.00 0.00 43.64 3.32
8433 9075 0.320946 CGGTATGGACCCGTGTGTTT 60.321 55.000 0.00 0.00 43.64 2.83
8434 9076 1.067000 CGGTATGGACCCGTGTGTTTA 60.067 52.381 0.00 0.00 43.64 2.01
8435 9077 2.419021 CGGTATGGACCCGTGTGTTTAT 60.419 50.000 0.00 0.00 43.64 1.40
8436 9078 3.181477 CGGTATGGACCCGTGTGTTTATA 60.181 47.826 0.00 0.00 43.64 0.98
8437 9079 4.501915 CGGTATGGACCCGTGTGTTTATAT 60.502 45.833 0.00 0.00 43.64 0.86
8438 9080 5.370679 GGTATGGACCCGTGTGTTTATATT 58.629 41.667 0.00 0.00 40.23 1.28
8439 9081 5.237779 GGTATGGACCCGTGTGTTTATATTG 59.762 44.000 0.00 0.00 40.23 1.90
8440 9082 4.554960 TGGACCCGTGTGTTTATATTGA 57.445 40.909 0.00 0.00 0.00 2.57
8441 9083 4.255301 TGGACCCGTGTGTTTATATTGAC 58.745 43.478 0.00 0.00 0.00 3.18
8442 9084 4.020039 TGGACCCGTGTGTTTATATTGACT 60.020 41.667 0.00 0.00 0.00 3.41
8443 9085 4.331717 GGACCCGTGTGTTTATATTGACTG 59.668 45.833 0.00 0.00 0.00 3.51
8444 9086 5.155278 ACCCGTGTGTTTATATTGACTGA 57.845 39.130 0.00 0.00 0.00 3.41
8445 9087 4.933400 ACCCGTGTGTTTATATTGACTGAC 59.067 41.667 0.00 0.00 0.00 3.51
8446 9088 5.175859 CCCGTGTGTTTATATTGACTGACT 58.824 41.667 0.00 0.00 0.00 3.41
8447 9089 5.642063 CCCGTGTGTTTATATTGACTGACTT 59.358 40.000 0.00 0.00 0.00 3.01
8448 9090 6.814644 CCCGTGTGTTTATATTGACTGACTTA 59.185 38.462 0.00 0.00 0.00 2.24
8449 9091 7.332430 CCCGTGTGTTTATATTGACTGACTTAA 59.668 37.037 0.00 0.00 0.00 1.85
8450 9092 8.879759 CCGTGTGTTTATATTGACTGACTTAAT 58.120 33.333 0.00 0.00 0.00 1.40
8485 9127 6.952773 ATGTCTAGATTATCTATCTCGGGC 57.047 41.667 2.08 0.00 42.69 6.13
8486 9128 5.816682 TGTCTAGATTATCTATCTCGGGCA 58.183 41.667 2.08 0.00 42.69 5.36
8487 9129 5.648526 TGTCTAGATTATCTATCTCGGGCAC 59.351 44.000 2.08 0.00 42.69 5.01
8488 9130 5.648526 GTCTAGATTATCTATCTCGGGCACA 59.351 44.000 2.08 0.00 42.69 4.57
8489 9131 6.151312 GTCTAGATTATCTATCTCGGGCACAA 59.849 42.308 2.08 0.00 42.69 3.33
8490 9132 5.140747 AGATTATCTATCTCGGGCACAAC 57.859 43.478 0.00 0.00 39.46 3.32
8491 9133 4.835615 AGATTATCTATCTCGGGCACAACT 59.164 41.667 0.00 0.00 39.46 3.16
8492 9134 6.010850 AGATTATCTATCTCGGGCACAACTA 58.989 40.000 0.00 0.00 39.46 2.24
8493 9135 6.665680 AGATTATCTATCTCGGGCACAACTAT 59.334 38.462 0.00 0.00 39.46 2.12
8494 9136 7.834681 AGATTATCTATCTCGGGCACAACTATA 59.165 37.037 0.00 0.00 39.46 1.31
8495 9137 5.646577 ATCTATCTCGGGCACAACTATAC 57.353 43.478 0.00 0.00 0.00 1.47
8496 9138 3.825014 TCTATCTCGGGCACAACTATACC 59.175 47.826 0.00 0.00 0.00 2.73
8497 9139 2.154567 TCTCGGGCACAACTATACCT 57.845 50.000 0.00 0.00 0.00 3.08
8498 9140 2.029623 TCTCGGGCACAACTATACCTC 58.970 52.381 0.00 0.00 0.00 3.85
8499 9141 0.742505 TCGGGCACAACTATACCTCG 59.257 55.000 0.00 0.00 0.00 4.63
8500 9142 0.874607 CGGGCACAACTATACCTCGC 60.875 60.000 0.00 0.00 0.00 5.03
8501 9143 0.464452 GGGCACAACTATACCTCGCT 59.536 55.000 0.00 0.00 0.00 4.93
8502 9144 1.134491 GGGCACAACTATACCTCGCTT 60.134 52.381 0.00 0.00 0.00 4.68
8503 9145 1.933853 GGCACAACTATACCTCGCTTG 59.066 52.381 0.00 0.00 0.00 4.01
8504 9146 2.618053 GCACAACTATACCTCGCTTGT 58.382 47.619 0.00 0.00 0.00 3.16
8505 9147 2.348666 GCACAACTATACCTCGCTTGTG 59.651 50.000 5.57 5.57 42.98 3.33
8506 9148 2.930040 CACAACTATACCTCGCTTGTGG 59.070 50.000 0.00 0.00 38.59 4.17
8507 9149 1.933853 CAACTATACCTCGCTTGTGGC 59.066 52.381 0.00 0.00 37.64 5.01
8508 9150 1.191535 ACTATACCTCGCTTGTGGCA 58.808 50.000 0.00 0.00 41.91 4.92
8509 9151 1.762957 ACTATACCTCGCTTGTGGCAT 59.237 47.619 0.00 0.00 41.91 4.40
8510 9152 2.170607 ACTATACCTCGCTTGTGGCATT 59.829 45.455 0.00 0.00 41.91 3.56
8511 9153 2.128771 ATACCTCGCTTGTGGCATTT 57.871 45.000 0.00 0.00 41.91 2.32
8512 9154 1.448985 TACCTCGCTTGTGGCATTTC 58.551 50.000 0.00 0.00 41.91 2.17
8513 9155 1.244019 ACCTCGCTTGTGGCATTTCC 61.244 55.000 0.00 0.00 41.91 3.13
8514 9156 0.962356 CCTCGCTTGTGGCATTTCCT 60.962 55.000 0.00 0.00 41.91 3.36
8515 9157 1.678728 CCTCGCTTGTGGCATTTCCTA 60.679 52.381 0.00 0.00 41.91 2.94
8516 9158 2.292267 CTCGCTTGTGGCATTTCCTAT 58.708 47.619 0.00 0.00 41.91 2.57
8517 9159 2.684881 CTCGCTTGTGGCATTTCCTATT 59.315 45.455 0.00 0.00 41.91 1.73
8518 9160 3.088532 TCGCTTGTGGCATTTCCTATTT 58.911 40.909 0.00 0.00 41.91 1.40
8519 9161 3.119531 TCGCTTGTGGCATTTCCTATTTG 60.120 43.478 0.00 0.00 41.91 2.32
8520 9162 3.524541 GCTTGTGGCATTTCCTATTTGG 58.475 45.455 0.00 0.00 41.35 3.28
8521 9163 3.524541 CTTGTGGCATTTCCTATTTGGC 58.475 45.455 0.00 0.00 36.55 4.52
8522 9164 2.533916 TGTGGCATTTCCTATTTGGCA 58.466 42.857 0.00 0.00 42.76 4.92
8523 9165 3.106054 TGTGGCATTTCCTATTTGGCAT 58.894 40.909 1.70 0.00 45.88 4.40
8524 9166 3.132646 TGTGGCATTTCCTATTTGGCATC 59.867 43.478 1.70 0.00 45.88 3.91
8525 9167 3.132646 GTGGCATTTCCTATTTGGCATCA 59.867 43.478 1.70 0.00 45.88 3.07
8526 9168 3.773667 TGGCATTTCCTATTTGGCATCAA 59.226 39.130 0.00 0.00 40.50 2.57
8527 9169 4.224594 TGGCATTTCCTATTTGGCATCAAA 59.775 37.500 0.00 0.00 40.50 2.69
8528 9170 4.812626 GGCATTTCCTATTTGGCATCAAAG 59.187 41.667 0.00 0.00 44.87 2.77
8529 9171 4.812626 GCATTTCCTATTTGGCATCAAAGG 59.187 41.667 0.00 0.00 44.87 3.11
8530 9172 4.470334 TTTCCTATTTGGCATCAAAGGC 57.530 40.909 0.00 0.00 44.87 4.35
8531 9173 2.023673 TCCTATTTGGCATCAAAGGCG 58.976 47.619 0.00 0.00 44.87 5.52
8532 9174 1.536709 CCTATTTGGCATCAAAGGCGC 60.537 52.381 0.00 0.00 44.87 6.53
8533 9175 0.459489 TATTTGGCATCAAAGGCGCC 59.541 50.000 21.89 21.89 44.87 6.53
8612 9257 2.159282 GGTACAAAAGAGAGATCGCCGA 60.159 50.000 0.00 0.00 0.00 5.54
8784 9434 6.719370 ACACCATATCTTGCTTTGTTTCCTTA 59.281 34.615 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.004839 TGCGAACCTCTCTATATGCAGAC 59.995 47.826 0.00 0.00 0.00 3.51
36 37 2.035961 GGTGCGAACCTCTCTATATGCA 59.964 50.000 4.88 0.00 0.00 3.96
108 110 1.114627 CCCTGCTTAAAATCCTGGGC 58.885 55.000 0.00 0.00 32.13 5.36
109 111 1.689258 CCCCCTGCTTAAAATCCTGGG 60.689 57.143 0.00 0.00 37.45 4.45
136 138 0.900182 CCCCCTCCTTTTGTCCTTGC 60.900 60.000 0.00 0.00 0.00 4.01
183 185 0.846015 CCCCCTATCAAGCATGGACA 59.154 55.000 0.00 0.00 0.00 4.02
206 208 2.203126 CTTCTCGATGGGCTGCCC 60.203 66.667 30.97 30.97 45.71 5.36
217 219 6.145535 TCATCATCATCACGTATTCTTCTCG 58.854 40.000 0.00 0.00 0.00 4.04
236 241 3.106827 TGCCACTCTGTTATCCTCATCA 58.893 45.455 0.00 0.00 0.00 3.07
253 258 5.278858 GCAAAATTTTGGAATTGGATTGCCA 60.279 36.000 27.60 0.00 38.91 4.92
268 273 0.398696 GGGGTTCCCCGCAAAATTTT 59.601 50.000 11.50 0.00 46.66 1.82
294 299 5.536916 AGGAGTATATTCTTGACCTCCTTCG 59.463 44.000 0.00 0.00 36.79 3.79
343 348 3.120060 CCTCCTTTTCAAGCTTGACATCG 60.120 47.826 28.46 15.93 36.83 3.84
404 409 2.286950 CGGCAATTTCATGTATGTCCGG 60.287 50.000 0.00 0.00 32.60 5.14
434 439 1.065564 AGTGCCTTCATCAAGAGGAGC 60.066 52.381 0.00 0.00 0.00 4.70
460 465 1.275010 TCATACGCTTGCTCTCCAACA 59.725 47.619 0.00 0.00 0.00 3.33
531 556 1.621992 GAGGGCATCTCGGACTATCA 58.378 55.000 0.00 0.00 32.18 2.15
532 557 0.892063 GGAGGGCATCTCGGACTATC 59.108 60.000 0.00 0.00 43.34 2.08
587 612 4.225942 TCCAATATTCAGTGGCTCAACTCT 59.774 41.667 0.00 0.00 39.83 3.24
649 674 1.336795 GCAACCACCAAATTCTTCGGG 60.337 52.381 0.00 0.00 0.00 5.14
696 721 2.354259 GGAGGAAGAGTCAATGTGCAG 58.646 52.381 0.00 0.00 0.00 4.41
771 798 7.604545 CCCAAACTAAGCTAGAAGCCTATTATC 59.395 40.741 0.00 0.00 43.77 1.75
773 800 6.614087 TCCCAAACTAAGCTAGAAGCCTATTA 59.386 38.462 0.00 0.00 43.77 0.98
801 828 1.523938 GACCTTAGGTCGGCATGCC 60.524 63.158 27.67 27.67 43.14 4.40
814 841 0.820891 CAGCTTGCACACCTGACCTT 60.821 55.000 2.15 0.00 0.00 3.50
815 842 1.228063 CAGCTTGCACACCTGACCT 60.228 57.895 2.15 0.00 0.00 3.85
821 848 1.133790 GAATGATCCAGCTTGCACACC 59.866 52.381 0.00 0.00 0.00 4.16
1327 1515 2.293677 CTCGTCGACATAGCCCTTGTAT 59.706 50.000 17.16 0.00 0.00 2.29
1462 1650 7.259088 AGACAGATGGACCCATATATAAACC 57.741 40.000 0.82 0.00 36.70 3.27
1484 1682 5.336849 GCTTTCAAGTTGCTACTCCTCTAGA 60.337 44.000 0.07 0.00 31.99 2.43
1511 1713 8.648557 TGTCAAATACGGAATAATTCTCTCAG 57.351 34.615 0.00 0.00 0.00 3.35
1543 1745 5.104941 GGGCTAAATAGGGAAGCACATTTTT 60.105 40.000 0.00 0.00 39.51 1.94
1547 1749 2.785857 AGGGCTAAATAGGGAAGCACAT 59.214 45.455 0.00 0.00 42.25 3.21
1574 1776 0.995024 AGTGCCAAGCAGGGTAGATT 59.005 50.000 0.00 0.00 40.08 2.40
1575 1777 1.879575 TAGTGCCAAGCAGGGTAGAT 58.120 50.000 0.00 0.00 40.08 1.98
1640 1842 3.965660 GGAAGGAGTCCGGGCATA 58.034 61.111 9.71 0.00 36.40 3.14
1662 1864 4.679373 ACTATCATTCTTCATGAGCCGT 57.321 40.909 0.00 0.00 45.52 5.68
1669 1871 5.604231 TGCCCTCACTACTATCATTCTTCAT 59.396 40.000 0.00 0.00 0.00 2.57
1670 1872 4.962362 TGCCCTCACTACTATCATTCTTCA 59.038 41.667 0.00 0.00 0.00 3.02
1764 1967 2.221055 ACTTTTGATGTCGAGTTGCGTC 59.779 45.455 0.00 0.00 41.80 5.19
1769 1972 5.995282 TCACCAATACTTTTGATGTCGAGTT 59.005 36.000 0.00 0.00 0.00 3.01
1780 1983 2.228822 CGCAAGCCTCACCAATACTTTT 59.771 45.455 0.00 0.00 0.00 2.27
1820 2024 1.076559 TCCTCGCCAGGTAATCCGA 60.077 57.895 0.00 0.00 41.28 4.55
1844 2048 2.476852 TAGCATGCAGGGTTCGGCAA 62.477 55.000 21.98 0.00 46.24 4.52
1864 2068 0.865769 ACGCCTAACAACAAAGAGCG 59.134 50.000 0.00 0.00 46.88 5.03
1915 2119 2.290367 CCAAATCTCTCACGCAAACACA 59.710 45.455 0.00 0.00 0.00 3.72
1939 2143 5.125900 TCGTTTGATGGGAAGTAAGATACGA 59.874 40.000 0.00 0.00 0.00 3.43
1954 2158 0.110238 CAAGGCACCGTCGTTTGATG 60.110 55.000 0.00 0.00 0.00 3.07
2472 2676 2.906389 AGAAGGTCACAAGCTACCATCA 59.094 45.455 10.41 0.00 36.23 3.07
2473 2677 3.265791 CAGAAGGTCACAAGCTACCATC 58.734 50.000 6.18 3.57 38.30 3.51
2474 2678 2.026822 CCAGAAGGTCACAAGCTACCAT 60.027 50.000 6.18 0.00 38.30 3.55
2475 2679 1.347707 CCAGAAGGTCACAAGCTACCA 59.652 52.381 6.18 0.00 38.30 3.25
2476 2680 1.946283 GCCAGAAGGTCACAAGCTACC 60.946 57.143 0.00 0.00 37.19 3.18
2477 2681 1.270839 TGCCAGAAGGTCACAAGCTAC 60.271 52.381 0.00 0.00 37.19 3.58
2478 2682 1.055849 TGCCAGAAGGTCACAAGCTA 58.944 50.000 0.00 0.00 37.19 3.32
2479 2683 0.403271 ATGCCAGAAGGTCACAAGCT 59.597 50.000 0.00 0.00 37.19 3.74
2480 2684 0.524862 CATGCCAGAAGGTCACAAGC 59.475 55.000 0.00 0.00 37.19 4.01
2481 2685 1.901591 ACATGCCAGAAGGTCACAAG 58.098 50.000 0.00 0.00 37.19 3.16
2482 2686 2.363306 AACATGCCAGAAGGTCACAA 57.637 45.000 0.00 0.00 37.19 3.33
2483 2687 2.158623 AGAAACATGCCAGAAGGTCACA 60.159 45.455 0.00 0.00 37.19 3.58
2484 2688 2.485814 GAGAAACATGCCAGAAGGTCAC 59.514 50.000 0.00 0.00 37.19 3.67
2611 3098 5.864418 ATGCACTCCATTGAAAGCATTAT 57.136 34.783 0.00 0.00 37.63 1.28
2696 3183 0.324368 ATAGACACCAGCACCCTCGA 60.324 55.000 0.00 0.00 0.00 4.04
2750 3240 0.409484 ATTGCTTAGGGGTGCCACTT 59.591 50.000 0.00 0.00 0.00 3.16
2767 3257 2.340427 CGCACAAAGTGGGGACATT 58.660 52.632 6.33 0.00 46.14 2.71
2783 3273 2.717809 GACGAAGCCTTGACGACGC 61.718 63.158 0.00 0.00 0.00 5.19
2784 3274 0.167470 TAGACGAAGCCTTGACGACG 59.833 55.000 0.00 0.00 0.00 5.12
2795 3287 3.759618 AGAACCAAGAGGAGTAGACGAAG 59.240 47.826 0.00 0.00 38.69 3.79
2847 3339 1.080366 CGTGCACCACTACGGCTAA 60.080 57.895 12.15 0.00 39.03 3.09
2890 3382 2.159156 TGTCCCAAGGATGTTATCGTCG 60.159 50.000 0.00 0.00 32.73 5.12
3027 3519 2.832661 TGCTTTGCCCGCACAACT 60.833 55.556 0.00 0.00 31.40 3.16
3048 3540 0.952497 CGCACACAAGAGCACTCCAT 60.952 55.000 0.00 0.00 0.00 3.41
3148 3640 8.871686 AAATTACACAAAAGGAAGCTTAACAG 57.128 30.769 0.00 0.00 0.00 3.16
3270 3766 5.828328 AGAACTTCGAGAATTCCAACCTTTT 59.172 36.000 0.65 0.00 0.00 2.27
3274 3770 6.796705 TTTAGAACTTCGAGAATTCCAACC 57.203 37.500 0.65 0.00 0.00 3.77
3286 3782 9.716507 TGAAACTTTCAAGATTTTAGAACTTCG 57.283 29.630 1.47 0.00 36.59 3.79
3383 3891 5.105228 AGCATGATCCATACCCAAAAAGTTG 60.105 40.000 0.00 0.00 34.25 3.16
3431 3939 0.896940 AAGACACGCGGGGTTCTCTA 60.897 55.000 15.46 0.00 0.00 2.43
3471 3979 4.956075 CCCACCAAATAATAGAAGCACCTT 59.044 41.667 0.00 0.00 0.00 3.50
3651 4162 9.758651 GGCGAGGGAAATAAACATATTTTTATT 57.241 29.630 11.98 11.98 41.41 1.40
3653 4164 7.562088 AGGGCGAGGGAAATAAACATATTTTTA 59.438 33.333 0.00 0.00 30.51 1.52
3765 4276 3.074390 TCCAAGGCAGGAAAGAAGATCAA 59.926 43.478 0.00 0.00 33.93 2.57
3766 4277 2.644299 TCCAAGGCAGGAAAGAAGATCA 59.356 45.455 0.00 0.00 33.93 2.92
3923 4438 8.261522 GGTATTTGGGGTTAAGAAATAATGCAA 58.738 33.333 0.00 0.00 0.00 4.08
4249 4772 9.713740 CCTTCGAGATTAATGAATTTGAAGAAG 57.286 33.333 11.44 7.06 32.33 2.85
4270 4793 2.668144 ACCCCTCTCTAGATCCTTCG 57.332 55.000 0.00 0.00 0.00 3.79
4284 4812 6.752285 TTTGTAGTCACTTACTTTACCCCT 57.248 37.500 0.00 0.00 39.80 4.79
4317 4845 7.469456 GCGCTACCATTAATATCCAAGGAAAAA 60.469 37.037 0.00 0.00 0.00 1.94
4329 4857 5.047164 TCCTTTATCCGCGCTACCATTAATA 60.047 40.000 5.56 0.00 0.00 0.98
4367 4895 2.457366 AGGGTTCTCACTTAGTTGCG 57.543 50.000 0.00 0.00 0.00 4.85
4435 4963 9.793259 TGTCTTCAGTTAATTCTACCATTTCTT 57.207 29.630 0.00 0.00 0.00 2.52
4718 5314 1.815421 CTCCCGCATCTTCAACCCG 60.815 63.158 0.00 0.00 0.00 5.28
4742 5338 7.807977 AGTCATTGATGTTCTTTGTACAGTT 57.192 32.000 0.00 0.00 0.00 3.16
4764 5360 2.643551 CTGTGAACACCTGGTTGAAGT 58.356 47.619 0.00 0.00 40.63 3.01
4795 5391 0.179000 CCTCCGCTTTGGCATCTACT 59.821 55.000 0.00 0.00 38.60 2.57
4856 5452 5.794894 AGTAGTGATGAAGTTTGTGTAGGG 58.205 41.667 0.00 0.00 0.00 3.53
4862 5458 5.986135 GTGTCAGAGTAGTGATGAAGTTTGT 59.014 40.000 0.00 0.00 0.00 2.83
4891 5487 5.822519 GCCACTTACAATGATGGTATTCTGA 59.177 40.000 0.00 0.00 34.50 3.27
4905 5501 4.709250 TGACACAGTAATGCCACTTACAA 58.291 39.130 0.00 0.00 34.66 2.41
4908 5504 4.155826 GCAATGACACAGTAATGCCACTTA 59.844 41.667 0.00 0.00 0.00 2.24
4912 5508 2.794103 AGCAATGACACAGTAATGCCA 58.206 42.857 0.00 0.00 0.00 4.92
4914 5510 5.739752 TGATAGCAATGACACAGTAATGC 57.260 39.130 0.00 0.00 0.00 3.56
4994 5590 5.039920 TGATTGCATCTAACTACCATGCT 57.960 39.130 4.86 0.00 42.91 3.79
5082 5682 5.308497 TGTTGGACACTCCTTCCTTATGTAA 59.692 40.000 0.00 0.00 37.46 2.41
5083 5683 4.841813 TGTTGGACACTCCTTCCTTATGTA 59.158 41.667 0.00 0.00 37.46 2.29
5093 5693 1.444933 TTCCCATGTTGGACACTCCT 58.555 50.000 0.00 0.00 40.96 3.69
5155 5755 4.098501 GCTAAGTAGGCCATCAGCAAAATT 59.901 41.667 5.01 0.00 46.50 1.82
5225 5825 4.082245 TGTTAAGCGTCACATGATGAGAGA 60.082 41.667 0.00 0.00 38.28 3.10
5230 5830 5.106948 ACTCTTTGTTAAGCGTCACATGATG 60.107 40.000 0.00 0.00 0.00 3.07
5284 5884 2.417924 CGCTGCCTTGATAGACAACTCT 60.418 50.000 0.00 0.00 34.56 3.24
5316 5916 8.875954 TTGATATCTTCAATGCCCATGATGTGG 61.876 40.741 3.98 0.00 42.42 4.17
5317 5917 5.475564 TGATATCTTCAATGCCCATGATGTG 59.524 40.000 3.98 0.00 0.00 3.21
5318 5918 5.637127 TGATATCTTCAATGCCCATGATGT 58.363 37.500 3.98 0.00 0.00 3.06
5322 5922 6.040054 TGTTCTTGATATCTTCAATGCCCATG 59.960 38.462 3.98 0.00 43.30 3.66
5348 5950 6.033831 CACATGTTCAACACAACTTTTGACTC 59.966 38.462 0.00 0.00 39.50 3.36
5357 5959 3.419264 TGAGCACATGTTCAACACAAC 57.581 42.857 0.00 0.00 39.50 3.32
5359 5961 2.358582 CCTTGAGCACATGTTCAACACA 59.641 45.455 8.57 0.00 39.71 3.72
5432 6034 9.730705 CCTTGTAGATATAACCATCACAATGAT 57.269 33.333 0.00 0.00 37.65 2.45
5477 6079 3.827817 TGTCCTTCTTACTCCTCCTGA 57.172 47.619 0.00 0.00 0.00 3.86
5480 6082 4.160065 GGTACTTGTCCTTCTTACTCCTCC 59.840 50.000 0.00 0.00 0.00 4.30
5525 6127 4.858692 CAGCGATGGTTAAATTGTTCTTGG 59.141 41.667 0.00 0.00 0.00 3.61
5546 6148 2.461695 TCTCCTTAGCTCCACCTTCAG 58.538 52.381 0.00 0.00 0.00 3.02
5593 6195 2.224450 CCACCTCGGACTTGGTAAACTT 60.224 50.000 0.00 0.00 36.56 2.66
5629 6231 0.885879 TTTGTTCGCTAGCTCGAGGA 59.114 50.000 15.58 0.00 39.82 3.71
5630 6232 0.992802 GTTTGTTCGCTAGCTCGAGG 59.007 55.000 15.58 0.00 39.82 4.63
5638 6240 3.554337 GGTCCTCTCTTGTTTGTTCGCTA 60.554 47.826 0.00 0.00 0.00 4.26
5718 6320 0.748005 ACACCACCTGGCGAATATGC 60.748 55.000 0.00 0.00 39.32 3.14
5735 6337 8.568794 TGTATTCGACAATAATTCCAACAAACA 58.431 29.630 0.00 0.00 34.15 2.83
5782 6384 4.518970 GTGCTCCAGTCACCATCTTAAAAA 59.481 41.667 0.00 0.00 0.00 1.94
5783 6385 4.072131 GTGCTCCAGTCACCATCTTAAAA 58.928 43.478 0.00 0.00 0.00 1.52
5795 6397 1.004440 AAGAAGCGGTGCTCCAGTC 60.004 57.895 5.52 0.00 38.25 3.51
5797 6399 2.684843 GCAAGAAGCGGTGCTCCAG 61.685 63.158 5.52 0.00 38.25 3.86
5818 6420 0.398318 AGAACAAGAGCTCACACCCC 59.602 55.000 17.77 0.18 0.00 4.95
5827 6429 4.006319 ACAATGAAGGCTAGAACAAGAGC 58.994 43.478 0.00 0.00 38.00 4.09
5831 6433 4.365514 TGGACAATGAAGGCTAGAACAA 57.634 40.909 0.00 0.00 0.00 2.83
5840 6442 5.508994 GGTGGTTAAGTTTGGACAATGAAGG 60.509 44.000 0.00 0.00 0.00 3.46
5882 6484 3.788227 AGTACCATGCCTTCAACAAGA 57.212 42.857 0.00 0.00 0.00 3.02
6096 6698 3.801594 ACGATGCCAAAAACATCAACAAC 59.198 39.130 4.78 0.00 43.36 3.32
6148 6750 6.072119 CCTCTATATCATTGCAATGCACACAT 60.072 38.462 30.57 21.20 38.71 3.21
6176 6778 5.476945 TCTCAAAAAGAAGGTTAGAATGCCC 59.523 40.000 0.00 0.00 0.00 5.36
6214 6817 4.755266 ACACCTGACCTTCCATATACAC 57.245 45.455 0.00 0.00 0.00 2.90
6229 6832 3.884895 TGATAGGCATGGTTTACACCTG 58.115 45.455 0.00 0.00 44.61 4.00
6262 6882 3.531538 GATCTATTTCGGTTGTCCTGCA 58.468 45.455 0.00 0.00 0.00 4.41
6269 6889 2.276201 TGGTGCGATCTATTTCGGTTG 58.724 47.619 0.00 0.00 39.49 3.77
6272 6892 2.550978 ACTTGGTGCGATCTATTTCGG 58.449 47.619 0.00 0.00 39.49 4.30
6274 6894 5.557136 CGATCAACTTGGTGCGATCTATTTC 60.557 44.000 0.00 0.00 33.60 2.17
6283 6903 0.953471 TTCCCGATCAACTTGGTGCG 60.953 55.000 0.00 0.00 0.00 5.34
6284 6904 0.804989 CTTCCCGATCAACTTGGTGC 59.195 55.000 0.00 0.00 0.00 5.01
6298 6918 4.142513 GCTTTCATGATCTTGTGTCTTCCC 60.143 45.833 8.33 0.00 0.00 3.97
6315 6935 2.143122 GTGTCTGGATTGTCGCTTTCA 58.857 47.619 0.00 0.00 0.00 2.69
6385 7005 7.540474 AGAATTAGTCTATCGAGGCCATTAA 57.460 36.000 5.01 0.00 33.56 1.40
6387 7007 5.336055 CGAGAATTAGTCTATCGAGGCCATT 60.336 44.000 5.01 0.00 36.41 3.16
6404 7024 9.823647 AAATTGACATAGTACAGATCGAGAATT 57.176 29.630 0.00 0.00 0.00 2.17
6426 7046 3.467803 GGGCGCTCTCATGTACTAAATT 58.532 45.455 7.64 0.00 0.00 1.82
6439 7059 0.393077 AGCATAATTACGGGCGCTCT 59.607 50.000 5.36 0.00 0.00 4.09
6453 7073 8.304596 CAACGAATATTAGACTCCCTAAGCATA 58.695 37.037 2.28 0.00 40.40 3.14
6459 7079 6.837568 AGGTTCAACGAATATTAGACTCCCTA 59.162 38.462 2.28 0.00 0.00 3.53
6465 7085 6.882458 AACGAGGTTCAACGAATATTAGAC 57.118 37.500 2.28 0.00 0.00 2.59
6573 7193 7.672983 AGAGCTTTGATTAAAAATGTCTCGA 57.327 32.000 0.00 0.00 0.00 4.04
6580 7200 9.259832 ACTGGGATAAGAGCTTTGATTAAAAAT 57.740 29.630 0.00 0.00 0.00 1.82
6589 7209 6.115446 TCATTGTACTGGGATAAGAGCTTTG 58.885 40.000 0.00 0.00 0.00 2.77
6681 7305 2.035961 CCTCAGTTGTCCGAGAAGAACA 59.964 50.000 0.00 0.00 0.00 3.18
6728 7352 1.028130 CTCATCCTCGCAGCAGTAGA 58.972 55.000 0.00 0.00 0.00 2.59
6804 7428 8.700439 AGGTTGTAAAATTTGGCTTACTCTTA 57.300 30.769 0.00 0.00 0.00 2.10
6812 7436 5.806654 ACATGAGGTTGTAAAATTTGGCT 57.193 34.783 0.00 0.00 0.00 4.75
6866 7490 9.826574 TGTTAGTCTTCTTATTTGTGTACTTGT 57.173 29.630 0.00 0.00 0.00 3.16
6869 7493 9.477484 CAGTGTTAGTCTTCTTATTTGTGTACT 57.523 33.333 0.00 0.00 0.00 2.73
6873 7510 9.651718 GTTTCAGTGTTAGTCTTCTTATTTGTG 57.348 33.333 0.00 0.00 0.00 3.33
6955 7592 3.053395 ACCACATGATTGAGCTATGGGTT 60.053 43.478 0.00 0.00 0.00 4.11
6966 7603 5.351465 AGCTCGTTAGTTAACCACATGATTG 59.649 40.000 0.00 0.00 32.69 2.67
7021 7659 3.126001 AGTTGACCACGACAATGATGT 57.874 42.857 0.00 0.00 44.25 3.06
7102 7740 5.360999 TCTTGAAGTCACGATAGATGATGGT 59.639 40.000 0.00 0.00 41.38 3.55
7156 7794 2.868583 CGTGATTACATGAGAGCCAAGG 59.131 50.000 0.00 0.00 35.25 3.61
7202 7840 1.667236 TGCCCATCTTGCTATTGTCG 58.333 50.000 0.00 0.00 0.00 4.35
7206 7844 4.183223 TGGTAATGCCCATCTTGCTATT 57.817 40.909 0.00 0.00 36.04 1.73
7252 7890 6.093495 CACAATCGAAAAAGGGAACTATAGCA 59.907 38.462 0.00 0.00 42.68 3.49
7262 7900 4.932146 AGTTTGTCACAATCGAAAAAGGG 58.068 39.130 0.00 0.00 0.00 3.95
7264 7902 8.548721 AGTAGTAGTTTGTCACAATCGAAAAAG 58.451 33.333 0.00 0.00 0.00 2.27
7315 7953 9.476202 AAGAAAGTCAATTAACCACTAATTTGC 57.524 29.630 0.00 0.00 38.00 3.68
7338 7976 9.303116 TGCTTGGTAATCCTACAAAATTTAAGA 57.697 29.630 0.00 0.00 34.23 2.10
7364 8003 4.322273 GCTAGCCCAAAATCAGAAAGCTTT 60.322 41.667 12.53 12.53 0.00 3.51
7451 8090 2.800881 TGATATACTCTGGTGCAGCG 57.199 50.000 11.91 6.42 0.00 5.18
7495 8135 7.996385 ACAACTTTGTACAACTTCTGCTTAAT 58.004 30.769 8.07 0.00 40.16 1.40
7621 8261 1.916697 GCCTCGTCAAAAGCTCCAGC 61.917 60.000 0.00 0.00 42.49 4.85
7637 8277 1.990160 TTGTCCACCACCTTTCGCCT 61.990 55.000 0.00 0.00 0.00 5.52
7696 8336 0.469917 CATGGAGGAAGTATGGCCGT 59.530 55.000 1.35 1.35 0.00 5.68
7820 8460 1.078143 GGCGAGACTTTGGGCTGAT 60.078 57.895 0.00 0.00 0.00 2.90
7888 8528 0.319083 ACGGTTCTACAACGCCATCA 59.681 50.000 0.00 0.00 32.68 3.07
8120 8762 6.541278 TGATCTGGCATCTTAATGTTTGAGAG 59.459 38.462 0.00 0.00 35.18 3.20
8121 8763 6.417258 TGATCTGGCATCTTAATGTTTGAGA 58.583 36.000 0.00 0.00 35.18 3.27
8122 8764 6.688637 TGATCTGGCATCTTAATGTTTGAG 57.311 37.500 0.00 0.00 35.18 3.02
8123 8765 6.829811 TGATGATCTGGCATCTTAATGTTTGA 59.170 34.615 0.00 0.00 43.89 2.69
8124 8766 7.034685 TGATGATCTGGCATCTTAATGTTTG 57.965 36.000 0.00 0.00 43.89 2.93
8125 8767 7.834881 ATGATGATCTGGCATCTTAATGTTT 57.165 32.000 0.00 0.00 43.89 2.83
8126 8768 7.940688 TGTATGATGATCTGGCATCTTAATGTT 59.059 33.333 0.00 0.00 43.89 2.71
8127 8769 7.455891 TGTATGATGATCTGGCATCTTAATGT 58.544 34.615 0.00 0.00 43.89 2.71
8128 8770 7.916914 TGTATGATGATCTGGCATCTTAATG 57.083 36.000 0.00 0.00 43.89 1.90
8129 8771 7.120873 GCTTGTATGATGATCTGGCATCTTAAT 59.879 37.037 0.00 0.00 43.89 1.40
8130 8772 6.429078 GCTTGTATGATGATCTGGCATCTTAA 59.571 38.462 0.00 0.00 43.89 1.85
8131 8773 5.936372 GCTTGTATGATGATCTGGCATCTTA 59.064 40.000 0.00 0.00 43.89 2.10
8132 8774 4.760715 GCTTGTATGATGATCTGGCATCTT 59.239 41.667 0.00 0.00 43.89 2.40
8133 8775 4.202430 TGCTTGTATGATGATCTGGCATCT 60.202 41.667 0.00 0.00 43.89 2.90
8134 8776 4.070009 TGCTTGTATGATGATCTGGCATC 58.930 43.478 0.00 0.00 43.84 3.91
8135 8777 4.094830 TGCTTGTATGATGATCTGGCAT 57.905 40.909 0.00 0.00 0.00 4.40
8136 8778 3.564053 TGCTTGTATGATGATCTGGCA 57.436 42.857 0.00 0.00 0.00 4.92
8137 8779 3.366070 GCATGCTTGTATGATGATCTGGC 60.366 47.826 11.37 0.00 0.00 4.85
8138 8780 3.818773 TGCATGCTTGTATGATGATCTGG 59.181 43.478 20.33 0.00 0.00 3.86
8139 8781 5.181245 TCATGCATGCTTGTATGATGATCTG 59.819 40.000 27.12 3.92 46.10 2.90
8140 8782 5.313712 TCATGCATGCTTGTATGATGATCT 58.686 37.500 27.12 0.00 46.10 2.75
8141 8783 5.622770 TCATGCATGCTTGTATGATGATC 57.377 39.130 27.12 0.00 46.10 2.92
8201 8843 9.988815 GATGGACAACTTAGATATGACATAACT 57.011 33.333 9.84 9.84 0.00 2.24
8202 8844 9.764363 TGATGGACAACTTAGATATGACATAAC 57.236 33.333 0.00 0.00 0.00 1.89
8203 8845 9.764363 GTGATGGACAACTTAGATATGACATAA 57.236 33.333 0.00 0.00 0.00 1.90
8204 8846 8.923270 TGTGATGGACAACTTAGATATGACATA 58.077 33.333 0.00 0.00 0.00 2.29
8205 8847 7.712639 GTGTGATGGACAACTTAGATATGACAT 59.287 37.037 0.00 0.00 35.91 3.06
8206 8848 7.041721 GTGTGATGGACAACTTAGATATGACA 58.958 38.462 0.00 0.00 35.91 3.58
8207 8849 6.199154 CGTGTGATGGACAACTTAGATATGAC 59.801 42.308 0.00 0.00 35.91 3.06
8208 8850 6.096282 TCGTGTGATGGACAACTTAGATATGA 59.904 38.462 0.00 0.00 35.91 2.15
8209 8851 6.273071 TCGTGTGATGGACAACTTAGATATG 58.727 40.000 0.00 0.00 35.91 1.78
8210 8852 6.465439 TCGTGTGATGGACAACTTAGATAT 57.535 37.500 0.00 0.00 35.91 1.63
8211 8853 5.907866 TCGTGTGATGGACAACTTAGATA 57.092 39.130 0.00 0.00 35.91 1.98
8212 8854 4.801330 TCGTGTGATGGACAACTTAGAT 57.199 40.909 0.00 0.00 35.91 1.98
8213 8855 4.801330 ATCGTGTGATGGACAACTTAGA 57.199 40.909 0.00 0.00 35.91 2.10
8214 8856 6.961359 TTAATCGTGTGATGGACAACTTAG 57.039 37.500 0.00 0.00 35.91 2.18
8215 8857 6.128391 GCTTTAATCGTGTGATGGACAACTTA 60.128 38.462 0.00 0.00 35.91 2.24
8216 8858 5.334879 GCTTTAATCGTGTGATGGACAACTT 60.335 40.000 0.00 0.00 35.91 2.66
8217 8859 4.154195 GCTTTAATCGTGTGATGGACAACT 59.846 41.667 0.00 0.00 35.91 3.16
8218 8860 4.154195 AGCTTTAATCGTGTGATGGACAAC 59.846 41.667 0.00 0.00 35.91 3.32
8219 8861 4.154015 CAGCTTTAATCGTGTGATGGACAA 59.846 41.667 0.00 0.00 35.91 3.18
8220 8862 3.684305 CAGCTTTAATCGTGTGATGGACA 59.316 43.478 0.00 0.00 34.24 4.02
8221 8863 3.485877 GCAGCTTTAATCGTGTGATGGAC 60.486 47.826 0.00 0.00 34.24 4.02
8222 8864 2.677836 GCAGCTTTAATCGTGTGATGGA 59.322 45.455 0.00 0.00 34.24 3.41
8223 8865 2.419673 TGCAGCTTTAATCGTGTGATGG 59.580 45.455 0.00 0.00 34.24 3.51
8224 8866 3.745332 TGCAGCTTTAATCGTGTGATG 57.255 42.857 0.00 0.00 34.24 3.07
8225 8867 4.002982 TCTTGCAGCTTTAATCGTGTGAT 58.997 39.130 0.00 0.00 35.98 3.06
8226 8868 3.398406 TCTTGCAGCTTTAATCGTGTGA 58.602 40.909 0.00 0.00 0.00 3.58
8227 8869 3.811722 TCTTGCAGCTTTAATCGTGTG 57.188 42.857 0.00 0.00 0.00 3.82
8228 8870 4.436050 CGAATCTTGCAGCTTTAATCGTGT 60.436 41.667 0.00 0.00 0.00 4.49
8229 8871 4.024438 CGAATCTTGCAGCTTTAATCGTG 58.976 43.478 0.00 0.00 0.00 4.35
8230 8872 3.684788 ACGAATCTTGCAGCTTTAATCGT 59.315 39.130 9.35 9.35 36.32 3.73
8231 8873 4.024438 CACGAATCTTGCAGCTTTAATCG 58.976 43.478 0.00 1.50 0.00 3.34
8232 8874 3.788163 GCACGAATCTTGCAGCTTTAATC 59.212 43.478 6.86 0.00 39.93 1.75
8233 8875 3.191162 TGCACGAATCTTGCAGCTTTAAT 59.809 39.130 10.45 0.00 45.06 1.40
8234 8876 2.551887 TGCACGAATCTTGCAGCTTTAA 59.448 40.909 10.45 0.00 45.06 1.52
8235 8877 2.150390 TGCACGAATCTTGCAGCTTTA 58.850 42.857 10.45 0.00 45.06 1.85
8236 8878 0.953727 TGCACGAATCTTGCAGCTTT 59.046 45.000 10.45 0.00 45.06 3.51
8237 8879 2.632643 TGCACGAATCTTGCAGCTT 58.367 47.368 10.45 0.00 45.06 3.74
8238 8880 4.384599 TGCACGAATCTTGCAGCT 57.615 50.000 10.45 0.00 45.06 4.24
8256 8898 6.369065 TGCAGGTACGAACAAAAACAATTTTT 59.631 30.769 0.00 0.00 43.20 1.94
8257 8899 5.869888 TGCAGGTACGAACAAAAACAATTTT 59.130 32.000 0.00 0.00 39.30 1.82
8258 8900 5.411781 TGCAGGTACGAACAAAAACAATTT 58.588 33.333 0.00 0.00 0.00 1.82
8259 8901 5.000012 TGCAGGTACGAACAAAAACAATT 58.000 34.783 0.00 0.00 0.00 2.32
8260 8902 4.640789 TGCAGGTACGAACAAAAACAAT 57.359 36.364 0.00 0.00 0.00 2.71
8261 8903 4.498345 GGATGCAGGTACGAACAAAAACAA 60.498 41.667 0.00 0.00 0.00 2.83
8262 8904 3.003897 GGATGCAGGTACGAACAAAAACA 59.996 43.478 0.00 0.00 0.00 2.83
8263 8905 3.252458 AGGATGCAGGTACGAACAAAAAC 59.748 43.478 0.00 0.00 0.00 2.43
8264 8906 3.252215 CAGGATGCAGGTACGAACAAAAA 59.748 43.478 0.00 0.00 0.00 1.94
8265 8907 2.811431 CAGGATGCAGGTACGAACAAAA 59.189 45.455 0.00 0.00 0.00 2.44
8266 8908 2.224426 ACAGGATGCAGGTACGAACAAA 60.224 45.455 0.00 0.00 42.53 2.83
8267 8909 1.346395 ACAGGATGCAGGTACGAACAA 59.654 47.619 0.00 0.00 42.53 2.83
8268 8910 0.973632 ACAGGATGCAGGTACGAACA 59.026 50.000 0.00 0.00 42.53 3.18
8269 8911 1.337823 ACACAGGATGCAGGTACGAAC 60.338 52.381 0.00 0.00 42.53 3.95
8270 8912 0.973632 ACACAGGATGCAGGTACGAA 59.026 50.000 0.00 0.00 42.53 3.85
8271 8913 0.530744 GACACAGGATGCAGGTACGA 59.469 55.000 0.00 0.00 42.53 3.43
8272 8914 0.532573 AGACACAGGATGCAGGTACG 59.467 55.000 0.00 0.00 42.53 3.67
8273 8915 1.469940 CGAGACACAGGATGCAGGTAC 60.470 57.143 0.00 0.00 42.53 3.34
8274 8916 0.817654 CGAGACACAGGATGCAGGTA 59.182 55.000 0.00 0.00 42.53 3.08
8275 8917 1.188219 ACGAGACACAGGATGCAGGT 61.188 55.000 0.00 0.00 42.53 4.00
8276 8918 0.036952 AACGAGACACAGGATGCAGG 60.037 55.000 0.00 0.00 42.53 4.85
8277 8919 1.073964 CAACGAGACACAGGATGCAG 58.926 55.000 0.00 0.00 42.53 4.41
8278 8920 0.392706 ACAACGAGACACAGGATGCA 59.607 50.000 0.00 0.00 42.53 3.96
8279 8921 1.071605 GACAACGAGACACAGGATGC 58.928 55.000 0.00 0.00 42.53 3.91
8280 8922 2.732412 AGACAACGAGACACAGGATG 57.268 50.000 0.00 0.00 46.00 3.51
8281 8923 3.753294 AAAGACAACGAGACACAGGAT 57.247 42.857 0.00 0.00 0.00 3.24
8282 8924 3.536956 AAAAGACAACGAGACACAGGA 57.463 42.857 0.00 0.00 0.00 3.86
8283 8925 5.924475 AATAAAAGACAACGAGACACAGG 57.076 39.130 0.00 0.00 0.00 4.00
8284 8926 9.370126 CTAAAAATAAAAGACAACGAGACACAG 57.630 33.333 0.00 0.00 0.00 3.66
8285 8927 8.885722 ACTAAAAATAAAAGACAACGAGACACA 58.114 29.630 0.00 0.00 0.00 3.72
8286 8928 9.712359 AACTAAAAATAAAAGACAACGAGACAC 57.288 29.630 0.00 0.00 0.00 3.67
8287 8929 9.710979 CAACTAAAAATAAAAGACAACGAGACA 57.289 29.630 0.00 0.00 0.00 3.41
8288 8930 9.712359 ACAACTAAAAATAAAAGACAACGAGAC 57.288 29.630 0.00 0.00 0.00 3.36
8291 8933 9.843334 ACAACAACTAAAAATAAAAGACAACGA 57.157 25.926 0.00 0.00 0.00 3.85
8292 8934 9.879973 CACAACAACTAAAAATAAAAGACAACG 57.120 29.630 0.00 0.00 0.00 4.10
8297 8939 9.710979 CGAGACACAACAACTAAAAATAAAAGA 57.289 29.630 0.00 0.00 0.00 2.52
8298 8940 9.498307 ACGAGACACAACAACTAAAAATAAAAG 57.502 29.630 0.00 0.00 0.00 2.27
8299 8941 9.843334 AACGAGACACAACAACTAAAAATAAAA 57.157 25.926 0.00 0.00 0.00 1.52
8300 8942 9.279904 CAACGAGACACAACAACTAAAAATAAA 57.720 29.630 0.00 0.00 0.00 1.40
8301 8943 8.452534 ACAACGAGACACAACAACTAAAAATAA 58.547 29.630 0.00 0.00 0.00 1.40
8302 8944 7.976826 ACAACGAGACACAACAACTAAAAATA 58.023 30.769 0.00 0.00 0.00 1.40
8303 8945 6.848451 ACAACGAGACACAACAACTAAAAAT 58.152 32.000 0.00 0.00 0.00 1.82
8304 8946 6.073167 TGACAACGAGACACAACAACTAAAAA 60.073 34.615 0.00 0.00 0.00 1.94
8305 8947 5.408909 TGACAACGAGACACAACAACTAAAA 59.591 36.000 0.00 0.00 0.00 1.52
8306 8948 4.930405 TGACAACGAGACACAACAACTAAA 59.070 37.500 0.00 0.00 0.00 1.85
8307 8949 4.496360 TGACAACGAGACACAACAACTAA 58.504 39.130 0.00 0.00 0.00 2.24
8308 8950 4.109766 CTGACAACGAGACACAACAACTA 58.890 43.478 0.00 0.00 0.00 2.24
8309 8951 2.930040 CTGACAACGAGACACAACAACT 59.070 45.455 0.00 0.00 0.00 3.16
8310 8952 2.030457 CCTGACAACGAGACACAACAAC 59.970 50.000 0.00 0.00 0.00 3.32
8311 8953 2.276201 CCTGACAACGAGACACAACAA 58.724 47.619 0.00 0.00 0.00 2.83
8312 8954 1.934589 CCTGACAACGAGACACAACA 58.065 50.000 0.00 0.00 0.00 3.33
8313 8955 0.582005 GCCTGACAACGAGACACAAC 59.418 55.000 0.00 0.00 0.00 3.32
8314 8956 0.531974 GGCCTGACAACGAGACACAA 60.532 55.000 0.00 0.00 0.00 3.33
8315 8957 1.069090 GGCCTGACAACGAGACACA 59.931 57.895 0.00 0.00 0.00 3.72
8316 8958 2.022129 CGGCCTGACAACGAGACAC 61.022 63.158 0.00 0.00 0.00 3.67
8317 8959 2.338620 CGGCCTGACAACGAGACA 59.661 61.111 0.00 0.00 0.00 3.41
8318 8960 2.209064 TAGCGGCCTGACAACGAGAC 62.209 60.000 0.00 0.00 0.00 3.36
8319 8961 1.934220 CTAGCGGCCTGACAACGAGA 61.934 60.000 0.00 0.00 0.00 4.04
8320 8962 1.517257 CTAGCGGCCTGACAACGAG 60.517 63.158 0.00 0.00 0.00 4.18
8321 8963 2.571757 CTAGCGGCCTGACAACGA 59.428 61.111 0.00 0.00 0.00 3.85
8322 8964 2.509336 CCTAGCGGCCTGACAACG 60.509 66.667 0.00 0.00 0.00 4.10
8323 8965 1.448013 GACCTAGCGGCCTGACAAC 60.448 63.158 0.00 0.00 0.00 3.32
8324 8966 1.192146 AAGACCTAGCGGCCTGACAA 61.192 55.000 0.00 0.00 0.00 3.18
8325 8967 1.609501 AAGACCTAGCGGCCTGACA 60.610 57.895 0.00 0.00 0.00 3.58
8326 8968 1.153549 CAAGACCTAGCGGCCTGAC 60.154 63.158 0.00 0.00 0.00 3.51
8327 8969 1.192146 AACAAGACCTAGCGGCCTGA 61.192 55.000 0.00 0.00 0.00 3.86
8328 8970 0.321653 AAACAAGACCTAGCGGCCTG 60.322 55.000 0.00 0.00 0.00 4.85
8329 8971 0.400594 AAAACAAGACCTAGCGGCCT 59.599 50.000 0.00 0.00 0.00 5.19
8330 8972 1.244816 AAAAACAAGACCTAGCGGCC 58.755 50.000 0.00 0.00 0.00 6.13
8351 8993 1.000385 CAAGCGGCCATGTCTCAAAAA 60.000 47.619 2.24 0.00 0.00 1.94
8352 8994 0.597568 CAAGCGGCCATGTCTCAAAA 59.402 50.000 2.24 0.00 0.00 2.44
8353 8995 1.243342 CCAAGCGGCCATGTCTCAAA 61.243 55.000 2.24 0.00 0.00 2.69
8354 8996 1.675310 CCAAGCGGCCATGTCTCAA 60.675 57.895 2.24 0.00 0.00 3.02
8355 8997 2.046023 CCAAGCGGCCATGTCTCA 60.046 61.111 2.24 0.00 0.00 3.27
8356 8998 2.045926 ACCAAGCGGCCATGTCTC 60.046 61.111 2.24 0.00 34.57 3.36
8357 8999 2.045926 GACCAAGCGGCCATGTCT 60.046 61.111 2.24 0.00 34.57 3.41
8358 9000 1.675641 AAGACCAAGCGGCCATGTC 60.676 57.895 2.24 1.01 34.57 3.06
8359 9001 1.973281 CAAGACCAAGCGGCCATGT 60.973 57.895 2.24 0.00 34.57 3.21
8360 9002 1.973281 ACAAGACCAAGCGGCCATG 60.973 57.895 2.24 0.00 34.57 3.66
8361 9003 1.973281 CACAAGACCAAGCGGCCAT 60.973 57.895 2.24 0.00 34.57 4.40
8362 9004 2.594303 CACAAGACCAAGCGGCCA 60.594 61.111 2.24 0.00 34.57 5.36
8363 9005 2.594592 ACACAAGACCAAGCGGCC 60.595 61.111 0.00 0.00 34.57 6.13
8364 9006 2.946762 GACACAAGACCAAGCGGC 59.053 61.111 0.00 0.00 34.57 6.53
8365 9007 2.954753 GCGACACAAGACCAAGCGG 61.955 63.158 0.00 0.00 38.77 5.52
8366 9008 2.551270 GCGACACAAGACCAAGCG 59.449 61.111 0.00 0.00 0.00 4.68
8367 9009 2.551270 CGCGACACAAGACCAAGC 59.449 61.111 0.00 0.00 0.00 4.01
8368 9010 1.157870 AACCGCGACACAAGACCAAG 61.158 55.000 8.23 0.00 0.00 3.61
8369 9011 1.153329 AACCGCGACACAAGACCAA 60.153 52.632 8.23 0.00 0.00 3.67
8370 9012 1.885388 CAACCGCGACACAAGACCA 60.885 57.895 8.23 0.00 0.00 4.02
8371 9013 2.935955 CAACCGCGACACAAGACC 59.064 61.111 8.23 0.00 0.00 3.85
8372 9014 2.248431 GCAACCGCGACACAAGAC 59.752 61.111 8.23 0.00 0.00 3.01
8393 9035 4.280019 ACACAGGGGGCGGAAACC 62.280 66.667 0.00 0.00 0.00 3.27
8394 9036 2.983592 CACACAGGGGGCGGAAAC 60.984 66.667 0.00 0.00 0.00 2.78
8395 9037 4.966787 GCACACAGGGGGCGGAAA 62.967 66.667 0.00 0.00 0.00 3.13
8402 9044 3.407967 ATACCGGGCACACAGGGG 61.408 66.667 6.32 0.00 38.94 4.79
8403 9045 2.124736 CATACCGGGCACACAGGG 60.125 66.667 6.32 0.00 38.94 4.45
8404 9046 2.124736 CCATACCGGGCACACAGG 60.125 66.667 6.32 0.00 40.66 4.00
8405 9047 1.449601 GTCCATACCGGGCACACAG 60.450 63.158 6.32 0.00 40.18 3.66
8406 9048 2.666207 GTCCATACCGGGCACACA 59.334 61.111 6.32 0.00 40.18 3.72
8407 9049 2.124860 GGTCCATACCGGGCACAC 60.125 66.667 6.32 0.00 43.46 3.82
8408 9050 3.404438 GGGTCCATACCGGGCACA 61.404 66.667 6.32 0.00 45.07 4.57
8415 9057 2.766345 TAAACACACGGGTCCATACC 57.234 50.000 0.00 0.00 45.97 2.73
8416 9058 6.018507 GTCAATATAAACACACGGGTCCATAC 60.019 42.308 0.00 0.00 0.00 2.39
8417 9059 6.050432 GTCAATATAAACACACGGGTCCATA 58.950 40.000 0.00 0.00 0.00 2.74
8418 9060 4.879545 GTCAATATAAACACACGGGTCCAT 59.120 41.667 0.00 0.00 0.00 3.41
8419 9061 4.020039 AGTCAATATAAACACACGGGTCCA 60.020 41.667 0.00 0.00 0.00 4.02
8420 9062 4.331717 CAGTCAATATAAACACACGGGTCC 59.668 45.833 0.00 0.00 0.00 4.46
8421 9063 5.063060 GTCAGTCAATATAAACACACGGGTC 59.937 44.000 0.00 0.00 0.00 4.46
8422 9064 4.933400 GTCAGTCAATATAAACACACGGGT 59.067 41.667 0.00 0.00 0.00 5.28
8423 9065 5.175859 AGTCAGTCAATATAAACACACGGG 58.824 41.667 0.00 0.00 0.00 5.28
8424 9066 6.721571 AAGTCAGTCAATATAAACACACGG 57.278 37.500 0.00 0.00 0.00 4.94
8459 9101 8.904834 GCCCGAGATAGATAATCTAGACATAAA 58.095 37.037 0.00 0.00 45.35 1.40
8460 9102 8.053355 TGCCCGAGATAGATAATCTAGACATAA 58.947 37.037 0.00 0.00 45.35 1.90
8461 9103 7.499563 GTGCCCGAGATAGATAATCTAGACATA 59.500 40.741 0.00 0.00 45.35 2.29
8462 9104 6.320164 GTGCCCGAGATAGATAATCTAGACAT 59.680 42.308 0.00 0.00 45.35 3.06
8463 9105 5.648526 GTGCCCGAGATAGATAATCTAGACA 59.351 44.000 0.00 0.00 45.35 3.41
8464 9106 5.648526 TGTGCCCGAGATAGATAATCTAGAC 59.351 44.000 0.00 0.00 45.35 2.59
8465 9107 5.816682 TGTGCCCGAGATAGATAATCTAGA 58.183 41.667 0.00 0.00 45.35 2.43
8466 9108 6.151985 AGTTGTGCCCGAGATAGATAATCTAG 59.848 42.308 0.00 0.00 45.35 2.43
8467 9109 6.010850 AGTTGTGCCCGAGATAGATAATCTA 58.989 40.000 0.00 0.00 45.35 1.98
8469 9111 5.140747 AGTTGTGCCCGAGATAGATAATC 57.859 43.478 0.00 0.00 34.52 1.75
8470 9112 6.859112 ATAGTTGTGCCCGAGATAGATAAT 57.141 37.500 0.00 0.00 0.00 1.28
8471 9113 6.152323 GGTATAGTTGTGCCCGAGATAGATAA 59.848 42.308 0.00 0.00 0.00 1.75
8472 9114 5.651139 GGTATAGTTGTGCCCGAGATAGATA 59.349 44.000 0.00 0.00 0.00 1.98
8473 9115 4.463186 GGTATAGTTGTGCCCGAGATAGAT 59.537 45.833 0.00 0.00 0.00 1.98
8474 9116 3.825014 GGTATAGTTGTGCCCGAGATAGA 59.175 47.826 0.00 0.00 0.00 1.98
8475 9117 3.827302 AGGTATAGTTGTGCCCGAGATAG 59.173 47.826 0.00 0.00 0.00 2.08
8476 9118 3.825014 GAGGTATAGTTGTGCCCGAGATA 59.175 47.826 0.00 0.00 0.00 1.98
8477 9119 2.628657 GAGGTATAGTTGTGCCCGAGAT 59.371 50.000 0.00 0.00 0.00 2.75
8478 9120 2.029623 GAGGTATAGTTGTGCCCGAGA 58.970 52.381 0.00 0.00 0.00 4.04
8479 9121 1.269102 CGAGGTATAGTTGTGCCCGAG 60.269 57.143 0.00 0.00 0.00 4.63
8480 9122 0.742505 CGAGGTATAGTTGTGCCCGA 59.257 55.000 0.00 0.00 0.00 5.14
8481 9123 0.874607 GCGAGGTATAGTTGTGCCCG 60.875 60.000 0.00 0.00 0.00 6.13
8482 9124 0.464452 AGCGAGGTATAGTTGTGCCC 59.536 55.000 0.00 0.00 0.00 5.36
8483 9125 1.933853 CAAGCGAGGTATAGTTGTGCC 59.066 52.381 0.00 0.00 0.00 5.01
8484 9126 2.348666 CACAAGCGAGGTATAGTTGTGC 59.651 50.000 0.95 0.00 40.96 4.57
8485 9127 2.930040 CCACAAGCGAGGTATAGTTGTG 59.070 50.000 6.54 6.54 44.92 3.33
8486 9128 2.677037 GCCACAAGCGAGGTATAGTTGT 60.677 50.000 0.00 0.00 0.00 3.32
8487 9129 1.933853 GCCACAAGCGAGGTATAGTTG 59.066 52.381 0.00 0.00 0.00 3.16
8488 9130 2.311124 GCCACAAGCGAGGTATAGTT 57.689 50.000 0.00 0.00 0.00 2.24
8496 9138 7.888964 CCAAATAGGAAATGCCACAAGCGAG 62.889 48.000 0.00 0.00 42.77 5.03
8497 9139 6.171369 CCAAATAGGAAATGCCACAAGCGA 62.171 45.833 0.00 0.00 42.77 4.93
8498 9140 3.980123 CCAAATAGGAAATGCCACAAGCG 60.980 47.826 0.00 0.00 42.77 4.68
8499 9141 3.524541 CCAAATAGGAAATGCCACAAGC 58.475 45.455 0.00 0.00 41.22 4.01
8500 9142 3.055963 TGCCAAATAGGAAATGCCACAAG 60.056 43.478 0.00 0.00 41.22 3.16
8501 9143 2.902486 TGCCAAATAGGAAATGCCACAA 59.098 40.909 0.00 0.00 41.22 3.33
8502 9144 2.533916 TGCCAAATAGGAAATGCCACA 58.466 42.857 0.00 0.00 41.22 4.17
8503 9145 3.132646 TGATGCCAAATAGGAAATGCCAC 59.867 43.478 0.00 0.00 41.22 5.01
8504 9146 3.372897 TGATGCCAAATAGGAAATGCCA 58.627 40.909 0.00 0.00 41.22 4.92
8505 9147 4.405116 TTGATGCCAAATAGGAAATGCC 57.595 40.909 0.00 0.00 41.22 4.40
8506 9148 4.812626 CCTTTGATGCCAAATAGGAAATGC 59.187 41.667 0.00 0.00 41.03 3.56
8507 9149 4.812626 GCCTTTGATGCCAAATAGGAAATG 59.187 41.667 0.00 0.00 41.03 2.32
8508 9150 4.441913 CGCCTTTGATGCCAAATAGGAAAT 60.442 41.667 0.00 0.00 41.03 2.17
8509 9151 3.119173 CGCCTTTGATGCCAAATAGGAAA 60.119 43.478 0.00 0.00 41.03 3.13
8510 9152 2.426738 CGCCTTTGATGCCAAATAGGAA 59.573 45.455 0.00 0.00 41.03 3.36
8511 9153 2.023673 CGCCTTTGATGCCAAATAGGA 58.976 47.619 0.00 0.00 41.03 2.94
8512 9154 1.536709 GCGCCTTTGATGCCAAATAGG 60.537 52.381 0.00 0.00 41.03 2.57
8513 9155 1.843992 GCGCCTTTGATGCCAAATAG 58.156 50.000 0.00 0.00 41.03 1.73
8515 9157 4.917474 GCGCCTTTGATGCCAAAT 57.083 50.000 0.00 0.00 41.03 2.32
8520 9162 0.319813 AAAACTGGCGCCTTTGATGC 60.320 50.000 29.70 0.00 0.00 3.91
8521 9163 2.153366 AAAAACTGGCGCCTTTGATG 57.847 45.000 29.70 12.65 0.00 3.07
8545 9187 0.459237 AGCTTCGCGAGATTGTCTGG 60.459 55.000 9.59 0.00 41.60 3.86
8546 9188 1.354040 AAGCTTCGCGAGATTGTCTG 58.646 50.000 9.59 0.00 41.60 3.51
8612 9257 2.817839 GCCATGTTTGGTTAGGACACCT 60.818 50.000 0.00 0.00 45.57 4.00
8759 9404 5.079643 AGGAAACAAAGCAAGATATGGTGT 58.920 37.500 0.00 0.00 40.33 4.16
8784 9434 4.082125 GGTGGTTTTGGATGATCTCAAGT 58.918 43.478 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.