Multiple sequence alignment - TraesCS4A01G073400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G073400 chr4A 100.000 7605 0 0 1 7605 72303875 72296271 0.000000e+00 14044.0
1 TraesCS4A01G073400 chr4A 97.449 196 1 3 5246 5441 99007355 99007546 1.580000e-86 331.0
2 TraesCS4A01G073400 chr4D 95.120 1578 48 15 5470 7036 390602129 390600570 0.000000e+00 2460.0
3 TraesCS4A01G073400 chr4D 91.499 1694 68 32 660 2300 390606884 390605214 0.000000e+00 2261.0
4 TraesCS4A01G073400 chr4D 94.940 751 30 4 3131 3880 390604532 390603789 0.000000e+00 1170.0
5 TraesCS4A01G073400 chr4D 96.856 668 18 3 4601 5268 390603075 390602411 0.000000e+00 1114.0
6 TraesCS4A01G073400 chr4D 95.223 649 14 4 3922 4569 390603699 390603067 0.000000e+00 1011.0
7 TraesCS4A01G073400 chr4D 89.102 679 44 15 1 668 390607576 390606917 0.000000e+00 817.0
8 TraesCS4A01G073400 chr4D 92.126 508 35 3 2531 3036 390605037 390604533 0.000000e+00 712.0
9 TraesCS4A01G073400 chr4D 87.031 586 30 24 7039 7605 390600525 390599967 3.010000e-173 619.0
10 TraesCS4A01G073400 chr4D 96.651 209 6 1 5470 5677 390602366 390602158 5.650000e-91 346.0
11 TraesCS4A01G073400 chr4D 98.000 150 3 0 2382 2531 390605216 390605067 2.100000e-65 261.0
12 TraesCS4A01G073400 chr4B 96.154 1404 42 7 3870 5268 480596176 480594780 0.000000e+00 2283.0
13 TraesCS4A01G073400 chr4B 94.955 1229 51 6 5745 6966 480594734 480593510 0.000000e+00 1916.0
14 TraesCS4A01G073400 chr4B 90.433 1223 60 20 661 1848 480599683 480598483 0.000000e+00 1557.0
15 TraesCS4A01G073400 chr4B 93.076 751 43 4 3131 3880 480597239 480596497 0.000000e+00 1090.0
16 TraesCS4A01G073400 chr4B 88.905 685 43 17 2382 3036 480597921 480597240 0.000000e+00 813.0
17 TraesCS4A01G073400 chr4B 86.192 717 39 26 190 877 480600152 480599467 0.000000e+00 721.0
18 TraesCS4A01G073400 chr4B 91.772 474 21 10 7109 7568 480593236 480592767 1.790000e-180 643.0
19 TraesCS4A01G073400 chr4B 94.404 411 15 7 1793 2197 480598471 480598063 6.480000e-175 625.0
20 TraesCS4A01G073400 chr4B 91.748 206 8 2 1 206 480600367 480600171 2.090000e-70 278.0
21 TraesCS4A01G073400 chr4B 94.215 121 5 2 2182 2300 480598039 480597919 4.690000e-42 183.0
22 TraesCS4A01G073400 chr4B 83.333 108 11 6 1814 1917 480598023 480597919 8.130000e-15 93.5
23 TraesCS4A01G073400 chr6B 97.970 197 3 1 5245 5441 64738860 64739055 2.630000e-89 340.0
24 TraesCS4A01G073400 chr6B 89.167 120 9 4 3018 3135 424080616 424080499 6.150000e-31 147.0
25 TraesCS4A01G073400 chr6B 89.167 120 9 4 3018 3135 424303329 424303212 6.150000e-31 147.0
26 TraesCS4A01G073400 chr3B 99.462 186 1 0 5259 5444 738697722 738697537 9.450000e-89 339.0
27 TraesCS4A01G073400 chr3B 96.569 204 2 4 5246 5444 195101800 195101597 4.400000e-87 333.0
28 TraesCS4A01G073400 chr3B 97.423 194 4 1 5248 5441 406616424 406616616 5.690000e-86 329.0
29 TraesCS4A01G073400 chr3B 100.000 28 0 0 2165 2192 13750001 13750028 1.400000e-02 52.8
30 TraesCS4A01G073400 chr6A 98.438 192 2 1 5261 5452 127176297 127176487 3.400000e-88 337.0
31 TraesCS4A01G073400 chr6A 95.000 100 2 3 3033 3131 98239205 98239108 3.670000e-33 154.0
32 TraesCS4A01G073400 chr7B 98.429 191 1 2 5262 5452 152481525 152481713 1.220000e-87 335.0
33 TraesCS4A01G073400 chr1B 97.436 195 1 3 5248 5441 301282198 301282389 5.690000e-86 329.0
34 TraesCS4A01G073400 chr1A 96.482 199 4 3 5257 5453 33219852 33220049 7.360000e-85 326.0
35 TraesCS4A01G073400 chr1D 94.286 105 5 1 3027 3131 225936955 225936852 7.900000e-35 159.0
36 TraesCS4A01G073400 chr1D 95.918 98 4 0 3034 3131 225944039 225943942 7.900000e-35 159.0
37 TraesCS4A01G073400 chr5A 94.118 102 5 1 3034 3134 448616931 448616830 3.670000e-33 154.0
38 TraesCS4A01G073400 chr2A 93.269 104 7 0 3031 3134 68155820 68155923 3.670000e-33 154.0
39 TraesCS4A01G073400 chr7A 92.453 106 8 0 3031 3136 406995309 406995414 1.320000e-32 152.0
40 TraesCS4A01G073400 chr7D 89.565 115 10 2 3025 3138 561963321 561963434 2.210000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G073400 chr4A 72296271 72303875 7604 True 14044.0 14044 100.000000 1 7605 1 chr4A.!!$R1 7604
1 TraesCS4A01G073400 chr4D 390599967 390607576 7609 True 1077.1 2460 93.654800 1 7605 10 chr4D.!!$R1 7604
2 TraesCS4A01G073400 chr4B 480592767 480600367 7600 True 927.5 2283 91.380636 1 7568 11 chr4B.!!$R1 7567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 1027 0.030235 GCCGGGCGAAATAAACCATC 59.970 55.0 1.81 0.0 0.00 3.51 F
1867 2096 0.512952 GCGTTGTCTTGTGTAGCAGG 59.487 55.0 0.00 0.0 0.00 4.85 F
2707 3010 0.248907 AGTCGTCCGATTATGCCACG 60.249 55.0 0.00 0.0 0.00 4.94 F
3497 3801 0.250553 TGCTAAAGGTCCACGGTTGG 60.251 55.0 0.00 0.0 45.56 3.77 F
5273 5924 0.038166 TGTCACATTGAAGGGGAGCC 59.962 55.0 0.00 0.0 0.00 4.70 F
5277 5928 0.040204 ACATTGAAGGGGAGCCTTGG 59.960 55.0 0.00 0.0 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2341 0.107017 CTTGGGCGGGAATCATGTCT 60.107 55.000 0.00 0.00 0.00 3.41 R
2736 3039 0.107312 CCTCCCATGTCAGCCAGAAG 60.107 60.000 0.00 0.00 0.00 2.85 R
4393 5032 1.713932 CTACACACACACGATCACACG 59.286 52.381 0.00 0.00 39.31 4.49 R
5294 5945 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85 R
6445 7350 0.324285 AGCTCCTTGGAGAAGCACTG 59.676 55.000 19.85 0.00 0.00 3.66 R
6971 7880 0.453793 CTCACAGACTAGTCAGCGGG 59.546 60.000 24.44 13.38 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 5.038033 CAGCGTTAACTGACTAATCTCCTC 58.962 45.833 3.71 0.00 40.25 3.71
144 145 0.036294 GGGTGGACAGGAGTACAAGC 60.036 60.000 0.00 0.00 41.16 4.01
247 287 3.175240 CAGCTGAACCGAGCGACG 61.175 66.667 8.42 0.00 44.24 5.12
256 296 2.561885 CGAGCGACGGAACTCACT 59.438 61.111 0.00 0.00 38.46 3.41
257 297 1.512310 CGAGCGACGGAACTCACTC 60.512 63.158 0.00 0.00 38.46 3.51
432 480 3.756727 GTCCCGTCCTGTCCCGTC 61.757 72.222 0.00 0.00 0.00 4.79
546 594 3.515330 ATTAGCGCCGTTGTTACTACT 57.485 42.857 2.29 0.00 0.00 2.57
552 600 3.181506 GCGCCGTTGTTACTACTACTACT 60.182 47.826 0.00 0.00 0.00 2.57
553 601 4.034048 GCGCCGTTGTTACTACTACTACTA 59.966 45.833 0.00 0.00 0.00 1.82
554 602 5.493735 CGCCGTTGTTACTACTACTACTAC 58.506 45.833 0.00 0.00 0.00 2.73
557 605 5.880332 CCGTTGTTACTACTACTACTACCCA 59.120 44.000 0.00 0.00 0.00 4.51
558 606 6.183360 CCGTTGTTACTACTACTACTACCCAC 60.183 46.154 0.00 0.00 0.00 4.61
559 607 6.183360 CGTTGTTACTACTACTACTACCCACC 60.183 46.154 0.00 0.00 0.00 4.61
560 608 6.642733 TGTTACTACTACTACTACCCACCT 57.357 41.667 0.00 0.00 0.00 4.00
561 609 6.418101 TGTTACTACTACTACTACCCACCTG 58.582 44.000 0.00 0.00 0.00 4.00
562 610 6.012508 TGTTACTACTACTACTACCCACCTGT 60.013 42.308 0.00 0.00 0.00 4.00
582 630 1.866925 CGGCCAAACGGTCTTCTTC 59.133 57.895 2.24 0.00 0.00 2.87
608 656 4.072088 CCGCACGAGTGTTTCCGC 62.072 66.667 5.07 0.00 0.00 5.54
625 673 2.747855 CTCCGCCTTTCACTGCCC 60.748 66.667 0.00 0.00 0.00 5.36
653 701 0.918983 ATCCCGAATCTCAAAGCCCA 59.081 50.000 0.00 0.00 0.00 5.36
658 747 2.295909 CCGAATCTCAAAGCCCACAAAA 59.704 45.455 0.00 0.00 0.00 2.44
663 752 1.068921 CAAAGCCCACAAAACCCCG 59.931 57.895 0.00 0.00 0.00 5.73
811 900 1.883084 CCGCCTCCGCTTCACATAC 60.883 63.158 0.00 0.00 0.00 2.39
868 973 2.124487 CTCGCCTCCGTCTCTCCT 60.124 66.667 0.00 0.00 35.54 3.69
871 976 2.835895 GCCTCCGTCTCTCCTCCC 60.836 72.222 0.00 0.00 0.00 4.30
872 977 2.123640 CCTCCGTCTCTCCTCCCC 60.124 72.222 0.00 0.00 0.00 4.81
880 995 4.689549 TCTCCTCCCCCGTCGCAA 62.690 66.667 0.00 0.00 0.00 4.85
912 1027 0.030235 GCCGGGCGAAATAAACCATC 59.970 55.000 1.81 0.00 0.00 3.51
919 1040 2.538132 GCGAAATAAACCATCGGAACCG 60.538 50.000 6.94 6.94 37.08 4.44
952 1073 1.209504 CGCCAAAACCCTAGATCTCCA 59.790 52.381 0.00 0.00 0.00 3.86
1615 1737 4.101741 TGTTTTGTTGGGTCCTAAAATGGG 59.898 41.667 0.00 0.00 0.00 4.00
1667 1789 3.503748 AGACACCTGCTTGCTAATTGAAC 59.496 43.478 0.00 0.00 0.00 3.18
1770 1894 1.737793 CCCGATTGGTAAAGTGCAGTC 59.262 52.381 0.00 0.00 0.00 3.51
1771 1895 1.393539 CCGATTGGTAAAGTGCAGTCG 59.606 52.381 0.00 0.00 0.00 4.18
1774 1898 1.961793 TTGGTAAAGTGCAGTCGCTT 58.038 45.000 0.00 0.00 44.29 4.68
1775 1899 1.508632 TGGTAAAGTGCAGTCGCTTC 58.491 50.000 0.00 0.00 41.79 3.86
1776 1900 1.070134 TGGTAAAGTGCAGTCGCTTCT 59.930 47.619 0.00 0.00 41.79 2.85
1789 1913 5.340667 GCAGTCGCTTCTCTTTGTATTTTTG 59.659 40.000 0.00 0.00 34.30 2.44
1850 2078 2.812358 AAAGGGTAAGCCTTTTTGCG 57.188 45.000 3.95 0.00 40.60 4.85
1867 2096 0.512952 GCGTTGTCTTGTGTAGCAGG 59.487 55.000 0.00 0.00 0.00 4.85
1870 2099 2.413112 CGTTGTCTTGTGTAGCAGGATG 59.587 50.000 0.00 0.00 35.61 3.51
1993 2224 2.975851 CAATTTGAGTTGCTTCACGCTC 59.024 45.455 0.00 0.00 40.11 5.03
2045 2276 7.059945 CGTTTCTGTTTGTTCAATAGCTGAATC 59.940 37.037 0.00 0.00 45.74 2.52
2079 2310 3.181469 TGGCTATTACTTACGGCAGAAGG 60.181 47.826 0.00 0.00 0.00 3.46
2149 2380 0.514255 CGGTCTGATTATGCCATGCG 59.486 55.000 0.00 0.00 0.00 4.73
2233 2505 7.493521 CCGAAAAGGGTAAGCTTTTGCGTTA 62.494 44.000 3.20 0.00 43.38 3.18
2297 2569 7.921745 CAGGTCCTAAGCTACTGATAAAGTTAC 59.078 40.741 0.00 0.00 40.56 2.50
2298 2570 7.069702 AGGTCCTAAGCTACTGATAAAGTTACC 59.930 40.741 0.00 0.00 40.56 2.85
2299 2571 7.208777 GTCCTAAGCTACTGATAAAGTTACCC 58.791 42.308 0.00 0.00 40.56 3.69
2300 2572 6.040166 TCCTAAGCTACTGATAAAGTTACCCG 59.960 42.308 0.00 0.00 40.56 5.28
2301 2573 5.927281 AAGCTACTGATAAAGTTACCCGA 57.073 39.130 0.00 0.00 40.56 5.14
2302 2574 5.927281 AGCTACTGATAAAGTTACCCGAA 57.073 39.130 0.00 0.00 40.56 4.30
2303 2575 6.290294 AGCTACTGATAAAGTTACCCGAAA 57.710 37.500 0.00 0.00 40.56 3.46
2304 2576 6.704310 AGCTACTGATAAAGTTACCCGAAAA 58.296 36.000 0.00 0.00 40.56 2.29
2305 2577 7.336396 AGCTACTGATAAAGTTACCCGAAAAT 58.664 34.615 0.00 0.00 40.56 1.82
2306 2578 8.480501 AGCTACTGATAAAGTTACCCGAAAATA 58.519 33.333 0.00 0.00 40.56 1.40
2307 2579 8.762426 GCTACTGATAAAGTTACCCGAAAATAG 58.238 37.037 0.00 0.00 40.56 1.73
2308 2580 7.549615 ACTGATAAAGTTACCCGAAAATAGC 57.450 36.000 0.00 0.00 34.57 2.97
2309 2581 7.336396 ACTGATAAAGTTACCCGAAAATAGCT 58.664 34.615 0.00 0.00 34.57 3.32
2310 2582 7.827729 ACTGATAAAGTTACCCGAAAATAGCTT 59.172 33.333 0.00 0.00 34.57 3.74
2311 2583 8.570068 TGATAAAGTTACCCGAAAATAGCTTT 57.430 30.769 0.00 0.00 36.30 3.51
2312 2584 9.016438 TGATAAAGTTACCCGAAAATAGCTTTT 57.984 29.630 0.00 0.00 34.74 2.27
2313 2585 9.499585 GATAAAGTTACCCGAAAATAGCTTTTC 57.500 33.333 0.00 0.00 44.45 2.29
2314 2586 7.520451 AAAGTTACCCGAAAATAGCTTTTCT 57.480 32.000 8.79 0.00 45.30 2.52
2315 2587 6.496338 AGTTACCCGAAAATAGCTTTTCTG 57.504 37.500 8.79 3.13 45.30 3.02
2316 2588 6.002082 AGTTACCCGAAAATAGCTTTTCTGT 58.998 36.000 8.79 8.12 45.30 3.41
2317 2589 4.766404 ACCCGAAAATAGCTTTTCTGTG 57.234 40.909 8.79 1.29 45.30 3.66
2318 2590 4.142038 ACCCGAAAATAGCTTTTCTGTGT 58.858 39.130 8.79 1.79 45.30 3.72
2319 2591 4.583073 ACCCGAAAATAGCTTTTCTGTGTT 59.417 37.500 8.79 0.00 45.30 3.32
2320 2592 5.766174 ACCCGAAAATAGCTTTTCTGTGTTA 59.234 36.000 8.79 0.00 45.30 2.41
2321 2593 6.263617 ACCCGAAAATAGCTTTTCTGTGTTAA 59.736 34.615 8.79 0.00 45.30 2.01
2322 2594 6.801862 CCCGAAAATAGCTTTTCTGTGTTAAG 59.198 38.462 8.79 0.00 45.30 1.85
2323 2595 7.308348 CCCGAAAATAGCTTTTCTGTGTTAAGA 60.308 37.037 8.79 0.00 45.30 2.10
2324 2596 8.237267 CCGAAAATAGCTTTTCTGTGTTAAGAT 58.763 33.333 8.79 0.00 45.30 2.40
2330 2602 7.986085 AGCTTTTCTGTGTTAAGATATGTGT 57.014 32.000 0.00 0.00 0.00 3.72
2332 2604 9.155975 AGCTTTTCTGTGTTAAGATATGTGTAG 57.844 33.333 0.00 0.00 0.00 2.74
2333 2605 8.391106 GCTTTTCTGTGTTAAGATATGTGTAGG 58.609 37.037 0.00 0.00 0.00 3.18
2334 2606 8.786826 TTTTCTGTGTTAAGATATGTGTAGGG 57.213 34.615 0.00 0.00 0.00 3.53
2335 2607 7.490657 TTCTGTGTTAAGATATGTGTAGGGT 57.509 36.000 0.00 0.00 0.00 4.34
2336 2608 8.598202 TTCTGTGTTAAGATATGTGTAGGGTA 57.402 34.615 0.00 0.00 0.00 3.69
2337 2609 8.234136 TCTGTGTTAAGATATGTGTAGGGTAG 57.766 38.462 0.00 0.00 0.00 3.18
2338 2610 7.287005 TCTGTGTTAAGATATGTGTAGGGTAGG 59.713 40.741 0.00 0.00 0.00 3.18
2339 2611 6.183360 TGTGTTAAGATATGTGTAGGGTAGGC 60.183 42.308 0.00 0.00 0.00 3.93
2340 2612 5.900699 TGTTAAGATATGTGTAGGGTAGGCA 59.099 40.000 0.00 0.00 0.00 4.75
2341 2613 4.957684 AAGATATGTGTAGGGTAGGCAC 57.042 45.455 0.00 0.00 0.00 5.01
2342 2614 3.923648 AGATATGTGTAGGGTAGGCACA 58.076 45.455 0.00 0.00 45.48 4.57
2345 2617 1.651737 TGTGTAGGGTAGGCACATGT 58.348 50.000 0.00 0.00 38.09 3.21
2346 2618 2.822697 TGTGTAGGGTAGGCACATGTA 58.177 47.619 0.00 0.00 38.09 2.29
2347 2619 3.174779 TGTGTAGGGTAGGCACATGTAA 58.825 45.455 0.00 0.00 38.09 2.41
2348 2620 3.196901 TGTGTAGGGTAGGCACATGTAAG 59.803 47.826 0.00 0.00 38.09 2.34
2349 2621 3.449737 GTGTAGGGTAGGCACATGTAAGA 59.550 47.826 0.00 0.00 33.70 2.10
2350 2622 4.101119 GTGTAGGGTAGGCACATGTAAGAT 59.899 45.833 0.00 0.00 33.70 2.40
2351 2623 4.344102 TGTAGGGTAGGCACATGTAAGATC 59.656 45.833 0.00 0.00 0.00 2.75
2352 2624 3.384168 AGGGTAGGCACATGTAAGATCA 58.616 45.455 0.00 0.00 0.00 2.92
2353 2625 3.134804 AGGGTAGGCACATGTAAGATCAC 59.865 47.826 0.00 0.00 0.00 3.06
2354 2626 3.134804 GGGTAGGCACATGTAAGATCACT 59.865 47.826 0.00 0.00 0.00 3.41
2355 2627 4.384208 GGGTAGGCACATGTAAGATCACTT 60.384 45.833 0.00 0.00 39.81 3.16
2356 2628 5.186198 GGTAGGCACATGTAAGATCACTTT 58.814 41.667 0.00 0.00 37.53 2.66
2357 2629 5.065218 GGTAGGCACATGTAAGATCACTTTG 59.935 44.000 0.00 0.00 37.53 2.77
2358 2630 4.910195 AGGCACATGTAAGATCACTTTGA 58.090 39.130 0.00 0.00 37.53 2.69
2359 2631 4.940046 AGGCACATGTAAGATCACTTTGAG 59.060 41.667 0.00 0.00 37.53 3.02
2360 2632 4.697352 GGCACATGTAAGATCACTTTGAGT 59.303 41.667 0.00 0.00 37.53 3.41
2361 2633 5.182001 GGCACATGTAAGATCACTTTGAGTT 59.818 40.000 0.00 0.00 37.53 3.01
2362 2634 6.082338 GCACATGTAAGATCACTTTGAGTTG 58.918 40.000 0.00 0.00 37.53 3.16
2363 2635 6.293626 GCACATGTAAGATCACTTTGAGTTGT 60.294 38.462 0.00 0.00 37.53 3.32
2364 2636 7.642669 CACATGTAAGATCACTTTGAGTTGTT 58.357 34.615 0.00 0.00 37.53 2.83
2365 2637 8.131100 CACATGTAAGATCACTTTGAGTTGTTT 58.869 33.333 0.00 0.00 37.53 2.83
2366 2638 8.345565 ACATGTAAGATCACTTTGAGTTGTTTC 58.654 33.333 0.00 0.00 37.53 2.78
2367 2639 7.857734 TGTAAGATCACTTTGAGTTGTTTCA 57.142 32.000 0.00 0.00 37.53 2.69
2368 2640 7.693952 TGTAAGATCACTTTGAGTTGTTTCAC 58.306 34.615 0.00 0.00 37.53 3.18
2369 2641 6.757897 AAGATCACTTTGAGTTGTTTCACA 57.242 33.333 0.00 0.00 31.71 3.58
2370 2642 6.124088 AGATCACTTTGAGTTGTTTCACAC 57.876 37.500 0.00 0.00 0.00 3.82
2371 2643 4.335082 TCACTTTGAGTTGTTTCACACG 57.665 40.909 0.00 0.00 0.00 4.49
2372 2644 3.126171 TCACTTTGAGTTGTTTCACACGG 59.874 43.478 0.00 0.00 0.00 4.94
2373 2645 3.126171 CACTTTGAGTTGTTTCACACGGA 59.874 43.478 0.00 0.00 0.00 4.69
2374 2646 3.754323 ACTTTGAGTTGTTTCACACGGAA 59.246 39.130 0.00 0.00 0.00 4.30
2375 2647 4.216687 ACTTTGAGTTGTTTCACACGGAAA 59.783 37.500 0.00 0.00 43.07 3.13
2403 2675 3.071892 TCCTTCTGACCATACAACGGTTT 59.928 43.478 0.00 0.00 36.69 3.27
2433 2705 4.711399 TCAGTAGCTGAATGGATCAATGG 58.289 43.478 0.00 0.00 37.57 3.16
2522 2794 1.663695 CCAAACCGTCCGATTATGCT 58.336 50.000 0.00 0.00 0.00 3.79
2564 2866 1.287815 CCGGTGTCGTGCTAACTCA 59.712 57.895 0.00 0.00 33.95 3.41
2579 2881 2.879002 ACTCATCATGCCGTAGTCTG 57.121 50.000 0.00 0.00 0.00 3.51
2686 2989 1.698532 CCTAGAGCATGATTCCTGCCT 59.301 52.381 9.91 9.32 40.56 4.75
2707 3010 0.248907 AGTCGTCCGATTATGCCACG 60.249 55.000 0.00 0.00 0.00 4.94
2736 3039 1.817099 CTCTCGCTCCATGTTGGGC 60.817 63.158 0.00 0.00 38.32 5.36
2757 3060 2.611800 TGGCTGACATGGGAGGCT 60.612 61.111 17.22 0.00 35.81 4.58
2760 3063 0.255890 GGCTGACATGGGAGGCTTTA 59.744 55.000 11.28 0.00 0.00 1.85
2763 3066 2.421952 GCTGACATGGGAGGCTTTATCA 60.422 50.000 0.00 0.00 0.00 2.15
2791 3094 1.202268 GCTAACTCGTCACGCCATAGT 60.202 52.381 0.00 0.00 0.00 2.12
2792 3095 2.717530 CTAACTCGTCACGCCATAGTC 58.282 52.381 0.00 0.00 0.00 2.59
2793 3096 1.174783 AACTCGTCACGCCATAGTCT 58.825 50.000 0.00 0.00 0.00 3.24
2856 3160 1.826720 CCTGTGCTTTACCAATGCCAT 59.173 47.619 0.00 0.00 0.00 4.40
2859 3163 3.098377 TGTGCTTTACCAATGCCATGAT 58.902 40.909 0.00 0.00 0.00 2.45
2875 3179 8.640063 ATGCCATGATAAATAAAGCAGTATGA 57.360 30.769 0.00 0.00 39.69 2.15
2995 3299 7.327214 AGAGAAGAATCTAAGTTAAGCACCAG 58.673 38.462 0.00 0.00 35.54 4.00
2997 3301 8.135382 AGAAGAATCTAAGTTAAGCACCAGTA 57.865 34.615 0.00 0.00 32.88 2.74
3036 3340 7.201902 CCAGAATCTGAGGGCATAGAGATATAC 60.202 44.444 12.53 0.00 32.44 1.47
3037 3341 7.560991 CAGAATCTGAGGGCATAGAGATATACT 59.439 40.741 3.77 0.00 32.44 2.12
3038 3342 7.779798 AGAATCTGAGGGCATAGAGATATACTC 59.220 40.741 0.00 0.00 45.22 2.59
3039 3343 5.761205 TCTGAGGGCATAGAGATATACTCC 58.239 45.833 0.00 0.00 45.96 3.85
3040 3344 4.873010 TGAGGGCATAGAGATATACTCCC 58.127 47.826 0.00 0.00 45.96 4.30
3041 3345 4.546195 TGAGGGCATAGAGATATACTCCCT 59.454 45.833 0.00 0.00 45.96 4.20
3042 3346 5.137412 AGGGCATAGAGATATACTCCCTC 57.863 47.826 0.00 0.00 45.96 4.30
3043 3347 4.078863 AGGGCATAGAGATATACTCCCTCC 60.079 50.000 0.00 0.00 45.96 4.30
3044 3348 3.886505 GGCATAGAGATATACTCCCTCCG 59.113 52.174 0.00 0.00 45.96 4.63
3045 3349 4.528920 GCATAGAGATATACTCCCTCCGT 58.471 47.826 0.00 0.00 45.96 4.69
3046 3350 4.577283 GCATAGAGATATACTCCCTCCGTC 59.423 50.000 0.00 0.00 45.96 4.79
3047 3351 3.724732 AGAGATATACTCCCTCCGTCC 57.275 52.381 0.00 0.00 45.96 4.79
3048 3352 2.309458 AGAGATATACTCCCTCCGTCCC 59.691 54.545 0.00 0.00 45.96 4.46
3049 3353 2.041350 GAGATATACTCCCTCCGTCCCA 59.959 54.545 0.00 0.00 39.53 4.37
3050 3354 2.449730 AGATATACTCCCTCCGTCCCAA 59.550 50.000 0.00 0.00 0.00 4.12
3051 3355 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3052 3356 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3053 3357 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3054 3358 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3055 3359 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3056 3360 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3057 3361 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3058 3362 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3059 3363 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
3060 3364 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
3061 3365 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
3062 3366 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
3063 3367 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
3064 3368 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
3065 3369 4.083484 CCGTCCCAAAATAAGTGTCTTGAC 60.083 45.833 0.00 0.00 0.00 3.18
3066 3370 4.755123 CGTCCCAAAATAAGTGTCTTGACT 59.245 41.667 2.35 0.00 0.00 3.41
3067 3371 5.238650 CGTCCCAAAATAAGTGTCTTGACTT 59.761 40.000 2.35 0.00 39.54 3.01
3068 3372 6.238648 CGTCCCAAAATAAGTGTCTTGACTTT 60.239 38.462 2.35 0.51 37.38 2.66
3069 3373 6.918022 GTCCCAAAATAAGTGTCTTGACTTTG 59.082 38.462 2.35 3.83 37.38 2.77
3070 3374 6.831353 TCCCAAAATAAGTGTCTTGACTTTGA 59.169 34.615 10.45 0.00 37.38 2.69
3071 3375 7.505585 TCCCAAAATAAGTGTCTTGACTTTGAT 59.494 33.333 10.45 0.00 37.38 2.57
3072 3376 8.792633 CCCAAAATAAGTGTCTTGACTTTGATA 58.207 33.333 10.45 0.00 37.38 2.15
3073 3377 9.612620 CCAAAATAAGTGTCTTGACTTTGATAC 57.387 33.333 10.45 0.00 37.38 2.24
3077 3381 9.561069 AATAAGTGTCTTGACTTTGATACAACT 57.439 29.630 2.35 0.00 37.38 3.16
3078 3382 7.865706 AAGTGTCTTGACTTTGATACAACTT 57.134 32.000 2.35 0.00 31.92 2.66
3079 3383 7.865706 AGTGTCTTGACTTTGATACAACTTT 57.134 32.000 2.35 0.00 0.00 2.66
3080 3384 7.697691 AGTGTCTTGACTTTGATACAACTTTG 58.302 34.615 2.35 0.00 0.00 2.77
3081 3385 7.336931 AGTGTCTTGACTTTGATACAACTTTGT 59.663 33.333 0.00 0.00 44.86 2.83
3082 3386 8.609176 GTGTCTTGACTTTGATACAACTTTGTA 58.391 33.333 4.34 4.34 46.55 2.41
3083 3387 8.609176 TGTCTTGACTTTGATACAACTTTGTAC 58.391 33.333 3.95 0.65 45.47 2.90
3084 3388 8.827677 GTCTTGACTTTGATACAACTTTGTACT 58.172 33.333 3.95 0.00 45.47 2.73
3108 3412 9.310716 ACTAAAGTTACTACAAAGTTGAGACAC 57.689 33.333 0.00 0.00 37.15 3.67
3109 3413 9.530633 CTAAAGTTACTACAAAGTTGAGACACT 57.469 33.333 0.00 0.00 37.15 3.55
3110 3414 8.788325 AAAGTTACTACAAAGTTGAGACACTT 57.212 30.769 0.00 3.42 38.74 3.16
3111 3415 9.880157 AAAGTTACTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
3117 3421 8.621286 ACTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3118 3422 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
3119 3423 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
3120 3424 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3121 3425 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
3122 3426 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
3123 3427 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
3124 3428 4.202377 TGAGACACTTATTTTGGGACGGAA 60.202 41.667 0.00 0.00 0.00 4.30
3125 3429 4.324267 AGACACTTATTTTGGGACGGAAG 58.676 43.478 0.00 0.00 0.00 3.46
3126 3430 3.418047 ACACTTATTTTGGGACGGAAGG 58.582 45.455 0.00 0.00 0.00 3.46
3127 3431 3.073356 ACACTTATTTTGGGACGGAAGGA 59.927 43.478 0.00 0.00 0.00 3.36
3128 3432 3.689649 CACTTATTTTGGGACGGAAGGAG 59.310 47.826 0.00 0.00 0.00 3.69
3129 3433 3.329814 ACTTATTTTGGGACGGAAGGAGT 59.670 43.478 0.00 0.00 0.00 3.85
3259 3563 7.526526 CGGGCTTTGGTAATCATACTATCCTTA 60.527 40.741 0.00 0.00 32.36 2.69
3272 3576 5.662674 ACTATCCTTATATGTCTTCCGCC 57.337 43.478 0.00 0.00 0.00 6.13
3276 3580 3.650942 TCCTTATATGTCTTCCGCCCAAT 59.349 43.478 0.00 0.00 0.00 3.16
3300 3604 7.759489 TGATTTCTGTAGGTGCAATAAGTTT 57.241 32.000 0.00 0.00 0.00 2.66
3301 3605 7.592938 TGATTTCTGTAGGTGCAATAAGTTTG 58.407 34.615 0.00 0.00 0.00 2.93
3413 3717 7.834068 TTAGTTTCTCATGTACTCTTGATGC 57.166 36.000 0.00 0.00 0.00 3.91
3470 3774 1.978580 GACTGAAGGAAGGGGAGAACA 59.021 52.381 0.00 0.00 0.00 3.18
3492 3796 1.009829 GCTGATGCTAAAGGTCCACG 58.990 55.000 0.00 0.00 36.03 4.94
3497 3801 0.250553 TGCTAAAGGTCCACGGTTGG 60.251 55.000 0.00 0.00 45.56 3.77
3640 3944 5.720371 TTTGTAAATAGTGTGCTGCCATT 57.280 34.783 0.00 0.00 0.00 3.16
3655 3959 4.202141 GCTGCCATTGTGCTCCATATTAAA 60.202 41.667 0.00 0.00 0.00 1.52
3681 3985 7.175990 ACCTTGTTTCTTCACTTCAAGTGTAAA 59.824 33.333 17.27 12.82 46.03 2.01
3791 4095 1.282157 CCCGAACTTTTGGATCCTCCT 59.718 52.381 14.23 0.00 37.46 3.69
3848 4152 6.533730 TGGACAACTGAACTTTCTGATACAT 58.466 36.000 3.15 0.00 0.00 2.29
3850 4154 7.602644 TGGACAACTGAACTTTCTGATACATAC 59.397 37.037 3.15 0.00 0.00 2.39
3973 4611 7.254387 CCATGTCCTTGTTTTGTAAATTGTGTG 60.254 37.037 0.00 0.00 0.00 3.82
3979 4617 4.081420 TGTTTTGTAAATTGTGTGGCAGGT 60.081 37.500 0.00 0.00 0.00 4.00
4005 4643 8.752187 TGAGAAAAATTCTAGCCTGCAAATTAT 58.248 29.630 0.00 0.00 40.87 1.28
4170 4809 5.467063 GGAATCTCAAACTTCAGTCGAACTT 59.533 40.000 0.00 0.00 0.00 2.66
4180 4819 6.102663 ACTTCAGTCGAACTTCATTATCCTG 58.897 40.000 0.00 0.00 0.00 3.86
4393 5032 0.394216 TGTGCCTATGTGCATCACCC 60.394 55.000 0.00 0.00 44.30 4.61
4394 5033 1.153188 TGCCTATGTGCATCACCCG 60.153 57.895 0.00 0.00 36.04 5.28
4395 5034 1.153168 GCCTATGTGCATCACCCGT 60.153 57.895 0.00 0.00 32.73 5.28
4396 5035 1.439353 GCCTATGTGCATCACCCGTG 61.439 60.000 0.00 0.00 32.73 4.94
4397 5036 0.107703 CCTATGTGCATCACCCGTGT 60.108 55.000 0.00 0.00 32.73 4.49
4398 5037 1.009078 CTATGTGCATCACCCGTGTG 58.991 55.000 0.00 0.00 44.18 3.82
4422 5071 3.129113 TCGTGTGTGTGTAGTGTGTTAGT 59.871 43.478 0.00 0.00 0.00 2.24
4584 5235 7.425606 TGCCTCTAGTTTTTGTTCTTCATTTC 58.574 34.615 0.00 0.00 0.00 2.17
4665 5316 8.698973 TTCAACTATTTTATTGGACTTCACCA 57.301 30.769 0.00 0.00 38.24 4.17
4854 5505 9.964253 CATGTTATTATTCTCGTATTCTGATGC 57.036 33.333 0.00 0.00 0.00 3.91
4879 5530 8.935844 GCCTTCCTTCTTTTATTTTAAATGTGG 58.064 33.333 0.00 0.00 0.00 4.17
4974 5625 5.398012 GGGAATTGTACCTTCTAAGCCAGAT 60.398 44.000 5.55 0.00 31.77 2.90
4986 5637 7.094205 CCTTCTAAGCCAGATTATTGTGTTGTT 60.094 37.037 0.00 0.00 31.77 2.83
5212 5863 3.330701 TGATAACAGAGGCCCTTTGAAGT 59.669 43.478 8.51 0.00 0.00 3.01
5265 5916 7.377398 CCCAGTAATTTTCATGTCACATTGAA 58.623 34.615 0.00 0.00 0.00 2.69
5266 5917 7.543172 CCCAGTAATTTTCATGTCACATTGAAG 59.457 37.037 0.00 0.00 33.68 3.02
5267 5918 7.543172 CCAGTAATTTTCATGTCACATTGAAGG 59.457 37.037 0.00 0.00 33.68 3.46
5268 5919 7.543172 CAGTAATTTTCATGTCACATTGAAGGG 59.457 37.037 0.00 0.00 33.68 3.95
5269 5920 4.870123 TTTTCATGTCACATTGAAGGGG 57.130 40.909 0.00 0.00 33.68 4.79
5270 5921 3.805066 TTCATGTCACATTGAAGGGGA 57.195 42.857 0.00 0.00 0.00 4.81
5271 5922 3.354948 TCATGTCACATTGAAGGGGAG 57.645 47.619 0.00 0.00 0.00 4.30
5272 5923 1.747355 CATGTCACATTGAAGGGGAGC 59.253 52.381 0.00 0.00 0.00 4.70
5273 5924 0.038166 TGTCACATTGAAGGGGAGCC 59.962 55.000 0.00 0.00 0.00 4.70
5274 5925 0.329596 GTCACATTGAAGGGGAGCCT 59.670 55.000 0.00 0.00 0.00 4.58
5275 5926 1.075601 TCACATTGAAGGGGAGCCTT 58.924 50.000 0.00 0.00 0.00 4.35
5276 5927 1.180029 CACATTGAAGGGGAGCCTTG 58.820 55.000 0.00 0.00 0.00 3.61
5277 5928 0.040204 ACATTGAAGGGGAGCCTTGG 59.960 55.000 0.00 0.00 0.00 3.61
5278 5929 1.000866 ATTGAAGGGGAGCCTTGGC 59.999 57.895 2.97 2.97 0.00 4.52
5279 5930 2.843912 ATTGAAGGGGAGCCTTGGCG 62.844 60.000 5.95 0.00 0.00 5.69
5287 5938 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
5288 5939 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
5289 5940 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
5290 5941 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
5291 5942 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
5292 5943 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
5293 5944 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
5298 5949 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
5299 5950 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
5300 5951 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
5301 5952 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
5302 5953 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
5303 5954 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
5304 5955 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
5305 5956 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
5306 5957 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
5307 5958 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
5308 5959 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
5309 5960 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
5310 5961 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
5311 5962 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
5312 5963 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
5327 5978 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
5328 5979 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
5329 5980 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
5330 5981 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
5331 5982 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
5332 5983 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
5333 5984 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
5334 5985 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
5335 5986 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
5336 5987 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
5350 6001 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
5351 6002 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
5352 6003 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
5353 6004 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
5354 6005 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
5355 6006 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
5356 6007 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
5357 6008 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
5358 6009 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
5359 6010 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
5360 6011 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
5361 6012 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
5362 6013 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
5363 6014 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
5364 6015 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
5365 6016 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
5366 6017 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
5367 6018 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
5368 6019 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5369 6020 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5370 6021 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5371 6022 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
5372 6023 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
5373 6024 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
5374 6025 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
5375 6026 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
5376 6027 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
5377 6028 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
5378 6029 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
5379 6030 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
5380 6031 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
5381 6032 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
5382 6033 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
5383 6034 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
5384 6035 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
5385 6036 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
5386 6037 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
5387 6038 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
5392 6043 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5393 6044 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5394 6045 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5395 6046 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5396 6047 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5397 6048 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
5398 6049 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
5399 6050 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
5400 6051 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
5401 6052 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
5402 6053 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
5403 6054 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
5404 6055 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
5405 6056 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
5406 6057 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
5407 6058 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
5408 6059 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
5409 6060 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
5410 6061 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
5411 6062 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5436 6087 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
5437 6088 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
5438 6089 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
5439 6090 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
5440 6091 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
5441 6092 2.074113 TACATGCACCAGGTTGCCCA 62.074 55.000 10.46 0.00 42.25 5.36
5442 6093 1.985662 CATGCACCAGGTTGCCCAT 60.986 57.895 10.46 0.15 42.25 4.00
5443 6094 1.229272 ATGCACCAGGTTGCCCATT 60.229 52.632 10.46 0.00 42.25 3.16
5444 6095 1.546589 ATGCACCAGGTTGCCCATTG 61.547 55.000 10.46 0.00 42.25 2.82
5445 6096 1.907807 GCACCAGGTTGCCCATTGA 60.908 57.895 0.00 0.00 36.42 2.57
5451 6102 2.669781 CAGGTTGCCCATTGATGGTAT 58.330 47.619 9.07 0.00 46.65 2.73
5466 6117 6.313519 TGATGGTATTCTTAAGAGGCTTGT 57.686 37.500 5.12 0.00 0.00 3.16
5529 6204 3.303881 TCGGTAGCAGACATCATATGC 57.696 47.619 0.00 0.00 40.29 3.14
5530 6205 2.029020 TCGGTAGCAGACATCATATGCC 60.029 50.000 0.00 0.00 40.89 4.40
5536 6211 2.155732 GCAGACATCATATGCCGTAACG 59.844 50.000 0.00 0.00 33.81 3.18
5628 6304 6.196538 GTCTTCACGTTTTGAATTTCTCAACC 59.803 38.462 0.00 0.00 43.90 3.77
5638 6314 6.729690 TGAATTTCTCAACCAGGACAAATT 57.270 33.333 0.00 0.00 0.00 1.82
5724 6626 4.598022 TGATTGGTCAATGCCTGTTATCA 58.402 39.130 0.43 0.00 0.00 2.15
5734 6636 2.749076 TGCCTGTTATCATCAGTTGTGC 59.251 45.455 0.00 0.00 0.00 4.57
5743 6645 1.068474 ATCAGTTGTGCGTTCGTAGC 58.932 50.000 0.00 0.00 0.00 3.58
5748 6650 0.856641 TTGTGCGTTCGTAGCTTCAC 59.143 50.000 0.00 0.00 35.28 3.18
5941 6846 3.935828 AGCAGCGAATCCTTCTAACTTTC 59.064 43.478 0.00 0.00 0.00 2.62
5993 6898 1.172812 GGAAAGTGCTTCACGGCCTT 61.173 55.000 0.00 0.00 39.64 4.35
6087 6992 0.957395 AGTCCGCAGCACTTTGGATG 60.957 55.000 0.00 0.00 32.18 3.51
6154 7059 1.050988 ACATCCCTCCGTCTGATGGG 61.051 60.000 15.67 8.53 40.10 4.00
6382 7287 2.224606 CATGCTCATGCGGAACCTAAT 58.775 47.619 0.00 0.00 43.34 1.73
6445 7350 1.458639 GCATGGAGGTGGCTAATGGC 61.459 60.000 0.00 0.00 40.90 4.40
6459 7364 1.542492 AATGGCAGTGCTTCTCCAAG 58.458 50.000 16.11 0.00 31.12 3.61
6477 7382 2.551459 CAAGGAGCTCAGGAACAACAAG 59.449 50.000 17.19 0.00 0.00 3.16
6531 7436 2.559440 CAATGGGAGCTCTAGTTCTGC 58.441 52.381 14.64 0.00 0.00 4.26
6558 7463 3.562635 GCAGCAGAACGGTGGTAC 58.437 61.111 0.00 0.00 43.61 3.34
6609 7514 3.531538 CAAGTGCCGCTAAATAGAAGGA 58.468 45.455 6.59 0.00 0.00 3.36
6610 7515 3.906720 AGTGCCGCTAAATAGAAGGAA 57.093 42.857 6.59 0.00 0.00 3.36
6611 7516 3.798202 AGTGCCGCTAAATAGAAGGAAG 58.202 45.455 6.59 0.00 0.00 3.46
6639 7544 8.838365 AGGTATAGTACATAGAGAACAGAAACG 58.162 37.037 0.00 0.00 0.00 3.60
6645 7550 6.274157 ACATAGAGAACAGAAACGTGAGAT 57.726 37.500 0.00 0.00 0.00 2.75
6749 7654 7.533222 CGAGTTGTCTTGAGAATGAATGAAAAG 59.467 37.037 0.00 0.00 0.00 2.27
6813 7722 7.042456 ACTGTATCATGCTGCTTTAACTTATCG 60.042 37.037 0.00 0.00 0.00 2.92
6865 7774 6.543831 GGGCTAAGATGTTCAACATGTTATCT 59.456 38.462 17.90 12.74 41.51 1.98
6871 7780 3.505680 TGTTCAACATGTTATCTGGTGCC 59.494 43.478 11.53 0.00 31.22 5.01
6886 7795 4.074970 CTGGTGCCTGTTCTGTTCTTATT 58.925 43.478 0.00 0.00 0.00 1.40
6909 7818 2.159014 TGCTGGTGTTACTTGTTCGTCT 60.159 45.455 0.00 0.00 0.00 4.18
6926 7835 3.796717 TCGTCTCATGTGCATATTTCGTC 59.203 43.478 0.00 0.00 0.00 4.20
6946 7855 3.849911 TCGATTCTTCTCGAGTTGCAAT 58.150 40.909 13.13 6.82 42.38 3.56
6970 7879 3.446799 TGTGACAAGCTGAAAATGTTGC 58.553 40.909 0.00 0.00 0.00 4.17
6971 7880 2.796593 GTGACAAGCTGAAAATGTTGCC 59.203 45.455 0.00 0.00 0.00 4.52
6972 7881 2.224018 TGACAAGCTGAAAATGTTGCCC 60.224 45.455 0.00 0.00 0.00 5.36
6975 7884 1.737735 GCTGAAAATGTTGCCCCGC 60.738 57.895 0.00 0.00 0.00 6.13
6976 7885 1.966762 CTGAAAATGTTGCCCCGCT 59.033 52.632 0.00 0.00 0.00 5.52
6990 7957 0.453793 CCCGCTGACTAGTCTGTGAG 59.546 60.000 32.73 22.32 40.15 3.51
6994 7961 2.486203 CGCTGACTAGTCTGTGAGTCTT 59.514 50.000 29.33 0.00 42.21 3.01
6997 7964 5.163703 CGCTGACTAGTCTGTGAGTCTTAAT 60.164 44.000 29.33 0.00 42.21 1.40
7036 8006 4.748102 GTCTTGTTTGTCCGTCTGATGTTA 59.252 41.667 0.00 0.00 0.00 2.41
7038 8008 3.064207 TGTTTGTCCGTCTGATGTTAGC 58.936 45.455 0.00 0.00 0.00 3.09
7040 8010 4.021807 TGTTTGTCCGTCTGATGTTAGCTA 60.022 41.667 0.00 0.00 0.00 3.32
7066 8081 2.285602 CGCCTTCGTTTGGTCATATTCG 60.286 50.000 0.00 0.00 0.00 3.34
7073 8088 0.916086 TTGGTCATATTCGGTGGCCT 59.084 50.000 3.32 0.00 41.89 5.19
7074 8089 0.916086 TGGTCATATTCGGTGGCCTT 59.084 50.000 3.32 0.00 41.89 4.35
7080 8095 2.246761 TATTCGGTGGCCTTCCGTGG 62.247 60.000 28.83 10.71 46.86 4.94
7144 8194 3.958798 CCTCCAAATTCTCGTCCTAGGTA 59.041 47.826 9.08 0.00 0.00 3.08
7201 8251 3.876914 GGATGGATACGAAATGCTGAACA 59.123 43.478 0.00 0.00 42.51 3.18
7209 8259 3.814842 ACGAAATGCTGAACAGATCAACA 59.185 39.130 5.97 0.00 38.44 3.33
7267 8318 5.120053 TGAAGCTACAATCACGTTACACATG 59.880 40.000 0.00 0.00 0.00 3.21
7298 8349 0.248907 ATGACCCGATTACACGAGCG 60.249 55.000 0.00 0.00 35.09 5.03
7300 8351 2.202690 CCCGATTACACGAGCGCA 60.203 61.111 11.47 0.00 35.09 6.09
7422 8486 3.792053 GAGGTACATGGCCGCCTCG 62.792 68.421 11.61 3.95 38.22 4.63
7479 8543 2.651232 GCGCGGTCGTAGCAGTAG 60.651 66.667 8.83 0.00 38.14 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.963225 GCGAGGGGAGGAGATTAGTC 59.037 60.000 0.00 0.00 0.00 2.59
61 62 0.824182 CGCGAGGGGAGGAGATTAGT 60.824 60.000 0.00 0.00 0.00 2.24
62 63 1.960612 CGCGAGGGGAGGAGATTAG 59.039 63.158 0.00 0.00 0.00 1.73
63 64 2.201022 GCGCGAGGGGAGGAGATTA 61.201 63.158 12.10 0.00 0.00 1.75
144 145 1.057636 CAACGCCGTACTGTACTGTG 58.942 55.000 17.64 17.64 0.00 3.66
197 233 2.286025 GTGTTGACCGAGTGTTGGTAAC 59.714 50.000 0.00 0.00 40.63 2.50
247 287 4.054671 CAAAGAGTGAGTGAGTGAGTTCC 58.945 47.826 0.00 0.00 0.00 3.62
252 292 3.380320 TCGTTCAAAGAGTGAGTGAGTGA 59.620 43.478 0.00 0.00 37.61 3.41
253 293 3.706698 TCGTTCAAAGAGTGAGTGAGTG 58.293 45.455 0.00 0.00 37.61 3.51
254 294 3.797184 GCTCGTTCAAAGAGTGAGTGAGT 60.797 47.826 2.11 0.00 39.62 3.41
255 295 2.728839 GCTCGTTCAAAGAGTGAGTGAG 59.271 50.000 2.11 0.00 40.06 3.51
256 296 2.545952 GGCTCGTTCAAAGAGTGAGTGA 60.546 50.000 2.11 0.00 37.61 3.41
257 297 1.795286 GGCTCGTTCAAAGAGTGAGTG 59.205 52.381 2.11 0.00 37.61 3.51
289 329 3.752339 GCCTTTGGCTGGCTTCGG 61.752 66.667 2.00 1.02 46.69 4.30
395 435 4.487412 CGTACCTCGCCCGTGGAC 62.487 72.222 14.81 8.06 33.41 4.02
546 594 1.064463 CCGGACAGGTGGGTAGTAGTA 60.064 57.143 0.00 0.00 34.51 1.82
552 600 4.642488 TGGCCGGACAGGTGGGTA 62.642 66.667 5.41 0.00 43.70 3.69
554 602 4.278513 TTTGGCCGGACAGGTGGG 62.279 66.667 11.51 0.00 43.70 4.61
582 630 4.807039 CTCGTGCGGTTACGGGGG 62.807 72.222 0.00 0.00 43.85 5.40
608 656 2.747855 GGGCAGTGAAAGGCGGAG 60.748 66.667 0.00 0.00 0.00 4.63
717 806 1.471287 GGTCGCAAAACCTAACCATCC 59.529 52.381 0.00 0.00 36.32 3.51
758 847 0.103026 GATTCCCGAAATGCAAGGCC 59.897 55.000 0.00 0.00 0.00 5.19
853 949 3.213402 GGAGGAGAGACGGAGGCG 61.213 72.222 0.00 0.00 0.00 5.52
863 968 4.689549 TTGCGACGGGGGAGGAGA 62.690 66.667 0.00 0.00 0.00 3.71
929 1050 0.733150 GATCTAGGGTTTTGGCGTGC 59.267 55.000 0.00 0.00 0.00 5.34
931 1052 1.209747 GGAGATCTAGGGTTTTGGCGT 59.790 52.381 0.00 0.00 0.00 5.68
952 1073 2.032860 ATAGACGGGCAATGCGAGCT 62.033 55.000 0.00 0.00 0.00 4.09
966 1087 2.508751 GGGGCCGAGGGTCATAGAC 61.509 68.421 0.00 0.00 0.00 2.59
1479 1601 0.320771 CTTTATCGGATCCGGCAGGG 60.321 60.000 32.79 16.79 40.25 4.45
1519 1641 5.220989 GGTGTACCAAACAAAGAGAGAAACC 60.221 44.000 0.00 0.00 40.63 3.27
1667 1789 2.030717 CCCGAGATCACACCTCTATTCG 60.031 54.545 0.00 0.00 0.00 3.34
1847 2075 1.217001 CTGCTACACAAGACAACGCA 58.783 50.000 0.00 0.00 0.00 5.24
1848 2076 0.512952 CCTGCTACACAAGACAACGC 59.487 55.000 0.00 0.00 0.00 4.84
1850 2078 2.160417 GCATCCTGCTACACAAGACAAC 59.840 50.000 0.00 0.00 40.96 3.32
1867 2096 5.129320 ACCTCCCCAATTAGAATTTTGCATC 59.871 40.000 0.00 0.00 0.00 3.91
1870 2099 4.141937 GGACCTCCCCAATTAGAATTTTGC 60.142 45.833 0.00 0.00 0.00 3.68
1993 2224 7.290118 CGGAATGCTAAAAAGGAAAATGTTTG 58.710 34.615 0.00 0.00 0.00 2.93
2045 2276 5.618056 AGTAATAGCCATCGCATTGATTG 57.382 39.130 0.00 0.00 34.13 2.67
2079 2310 0.796870 GCCGAAAGTTTGCGCCATAC 60.797 55.000 4.18 0.00 0.00 2.39
2110 2341 0.107017 CTTGGGCGGGAATCATGTCT 60.107 55.000 0.00 0.00 0.00 3.41
2112 2343 1.754234 GCTTGGGCGGGAATCATGT 60.754 57.895 0.00 0.00 0.00 3.21
2149 2380 7.981102 AAAAGAAATACAGACAGGAGTAACC 57.019 36.000 0.00 0.00 39.35 2.85
2211 2483 3.364889 ACGCAAAAGCTTACCCTTTTC 57.635 42.857 0.00 0.00 41.67 2.29
2233 2505 9.751542 GTATTTGTATAGAGCTACACAAGACAT 57.248 33.333 2.14 0.00 34.44 3.06
2304 2576 9.672673 ACACATATCTTAACACAGAAAAGCTAT 57.327 29.630 0.00 0.00 0.00 2.97
2306 2578 7.986085 ACACATATCTTAACACAGAAAAGCT 57.014 32.000 0.00 0.00 0.00 3.74
2307 2579 8.391106 CCTACACATATCTTAACACAGAAAAGC 58.609 37.037 0.00 0.00 0.00 3.51
2308 2580 8.883731 CCCTACACATATCTTAACACAGAAAAG 58.116 37.037 0.00 0.00 0.00 2.27
2309 2581 8.380099 ACCCTACACATATCTTAACACAGAAAA 58.620 33.333 0.00 0.00 0.00 2.29
2310 2582 7.913789 ACCCTACACATATCTTAACACAGAAA 58.086 34.615 0.00 0.00 0.00 2.52
2311 2583 7.490657 ACCCTACACATATCTTAACACAGAA 57.509 36.000 0.00 0.00 0.00 3.02
2312 2584 7.287005 CCTACCCTACACATATCTTAACACAGA 59.713 40.741 0.00 0.00 0.00 3.41
2313 2585 7.434492 CCTACCCTACACATATCTTAACACAG 58.566 42.308 0.00 0.00 0.00 3.66
2314 2586 6.183360 GCCTACCCTACACATATCTTAACACA 60.183 42.308 0.00 0.00 0.00 3.72
2315 2587 6.183360 TGCCTACCCTACACATATCTTAACAC 60.183 42.308 0.00 0.00 0.00 3.32
2316 2588 5.900699 TGCCTACCCTACACATATCTTAACA 59.099 40.000 0.00 0.00 0.00 2.41
2317 2589 6.183360 TGTGCCTACCCTACACATATCTTAAC 60.183 42.308 0.00 0.00 39.29 2.01
2318 2590 5.900699 TGTGCCTACCCTACACATATCTTAA 59.099 40.000 0.00 0.00 39.29 1.85
2319 2591 5.460416 TGTGCCTACCCTACACATATCTTA 58.540 41.667 0.00 0.00 39.29 2.10
2320 2592 4.295201 TGTGCCTACCCTACACATATCTT 58.705 43.478 0.00 0.00 39.29 2.40
2321 2593 3.923648 TGTGCCTACCCTACACATATCT 58.076 45.455 0.00 0.00 39.29 1.98
2327 2599 3.449737 TCTTACATGTGCCTACCCTACAC 59.550 47.826 9.11 0.00 34.86 2.90
2328 2600 3.715287 TCTTACATGTGCCTACCCTACA 58.285 45.455 9.11 0.00 0.00 2.74
2329 2601 4.344102 TGATCTTACATGTGCCTACCCTAC 59.656 45.833 9.11 0.00 0.00 3.18
2330 2602 4.344102 GTGATCTTACATGTGCCTACCCTA 59.656 45.833 9.11 0.00 0.00 3.53
2331 2603 3.134804 GTGATCTTACATGTGCCTACCCT 59.865 47.826 9.11 0.00 0.00 4.34
2332 2604 3.134804 AGTGATCTTACATGTGCCTACCC 59.865 47.826 9.11 0.00 0.00 3.69
2333 2605 4.408182 AGTGATCTTACATGTGCCTACC 57.592 45.455 9.11 0.00 0.00 3.18
2334 2606 5.874810 TCAAAGTGATCTTACATGTGCCTAC 59.125 40.000 9.11 0.38 33.09 3.18
2335 2607 6.048732 TCAAAGTGATCTTACATGTGCCTA 57.951 37.500 9.11 0.00 33.09 3.93
2336 2608 4.910195 TCAAAGTGATCTTACATGTGCCT 58.090 39.130 9.11 0.00 33.09 4.75
2337 2609 4.697352 ACTCAAAGTGATCTTACATGTGCC 59.303 41.667 9.11 0.00 33.09 5.01
2338 2610 5.869753 ACTCAAAGTGATCTTACATGTGC 57.130 39.130 9.11 0.00 33.09 4.57
2339 2611 7.194607 ACAACTCAAAGTGATCTTACATGTG 57.805 36.000 9.11 0.00 33.09 3.21
2340 2612 7.807977 AACAACTCAAAGTGATCTTACATGT 57.192 32.000 2.69 2.69 33.09 3.21
2341 2613 8.344831 TGAAACAACTCAAAGTGATCTTACATG 58.655 33.333 0.00 0.00 33.09 3.21
2342 2614 8.345565 GTGAAACAACTCAAAGTGATCTTACAT 58.654 33.333 0.00 0.00 36.32 2.29
2343 2615 7.693952 GTGAAACAACTCAAAGTGATCTTACA 58.306 34.615 0.00 0.00 36.32 2.41
2363 2635 4.993029 AGGAAAATGTTTCCGTGTGAAA 57.007 36.364 12.83 0.00 43.23 2.69
2364 2636 4.642885 AGAAGGAAAATGTTTCCGTGTGAA 59.357 37.500 12.08 0.00 43.23 3.18
2365 2637 4.036262 CAGAAGGAAAATGTTTCCGTGTGA 59.964 41.667 20.60 0.00 41.46 3.58
2366 2638 4.036262 TCAGAAGGAAAATGTTTCCGTGTG 59.964 41.667 19.73 19.73 43.23 3.82
2367 2639 4.036380 GTCAGAAGGAAAATGTTTCCGTGT 59.964 41.667 12.08 6.28 43.23 4.49
2368 2640 4.537015 GTCAGAAGGAAAATGTTTCCGTG 58.463 43.478 12.08 11.41 43.23 4.94
2369 2641 3.568430 GGTCAGAAGGAAAATGTTTCCGT 59.432 43.478 12.83 10.38 43.23 4.69
2370 2642 3.568007 TGGTCAGAAGGAAAATGTTTCCG 59.432 43.478 12.83 1.22 43.23 4.30
2371 2643 5.728637 ATGGTCAGAAGGAAAATGTTTCC 57.271 39.130 11.12 11.12 38.86 3.13
2372 2644 7.214467 TGTATGGTCAGAAGGAAAATGTTTC 57.786 36.000 0.00 0.00 0.00 2.78
2373 2645 7.433680 GTTGTATGGTCAGAAGGAAAATGTTT 58.566 34.615 0.00 0.00 0.00 2.83
2374 2646 6.293955 CGTTGTATGGTCAGAAGGAAAATGTT 60.294 38.462 0.00 0.00 0.00 2.71
2375 2647 5.181245 CGTTGTATGGTCAGAAGGAAAATGT 59.819 40.000 0.00 0.00 0.00 2.71
2376 2648 5.391950 CCGTTGTATGGTCAGAAGGAAAATG 60.392 44.000 0.00 0.00 0.00 2.32
2377 2649 4.700213 CCGTTGTATGGTCAGAAGGAAAAT 59.300 41.667 0.00 0.00 0.00 1.82
2378 2650 4.069304 CCGTTGTATGGTCAGAAGGAAAA 58.931 43.478 0.00 0.00 0.00 2.29
2379 2651 3.071892 ACCGTTGTATGGTCAGAAGGAAA 59.928 43.478 0.00 0.00 29.77 3.13
2380 2652 2.635915 ACCGTTGTATGGTCAGAAGGAA 59.364 45.455 0.00 0.00 29.77 3.36
2433 2705 5.508200 TTTGCCGTATGAAATAACCATCC 57.492 39.130 0.00 0.00 0.00 3.51
2522 2794 0.463654 GCCTCCAACGGTGATGCATA 60.464 55.000 0.00 0.00 0.00 3.14
2547 2849 1.269166 GATGAGTTAGCACGACACCG 58.731 55.000 0.00 0.00 42.50 4.94
2564 2866 3.827008 AATGACAGACTACGGCATGAT 57.173 42.857 0.00 0.00 0.00 2.45
2606 2909 6.327279 AGCACAGGTAACCAACTTTTTATC 57.673 37.500 0.00 0.00 37.17 1.75
2661 2964 2.625790 AGGAATCATGCTCTAGGACGTC 59.374 50.000 7.13 7.13 0.00 4.34
2686 2989 2.542205 CGTGGCATAATCGGACGACTTA 60.542 50.000 0.00 0.00 31.71 2.24
2728 3031 0.610232 GTCAGCCAGAAGCCCAACAT 60.610 55.000 0.00 0.00 45.47 2.71
2736 3039 0.107312 CCTCCCATGTCAGCCAGAAG 60.107 60.000 0.00 0.00 0.00 2.85
2757 3060 4.163552 CGAGTTAGCACGACACTGATAAA 58.836 43.478 0.00 0.00 0.00 1.40
2760 3063 1.540267 ACGAGTTAGCACGACACTGAT 59.460 47.619 3.10 0.00 33.09 2.90
2763 3066 0.949397 TGACGAGTTAGCACGACACT 59.051 50.000 3.10 0.00 30.67 3.55
2875 3179 6.049955 TCTAGCCCGCAAAGCTAATAATAT 57.950 37.500 0.00 0.00 42.07 1.28
2885 3189 1.134694 GCGTTTCTAGCCCGCAAAG 59.865 57.895 13.31 0.00 46.26 2.77
2970 3274 7.038658 ACTGGTGCTTAACTTAGATTCTTCTCT 60.039 37.037 0.00 0.00 33.17 3.10
3011 3315 6.795144 ATATCTCTATGCCCTCAGATTCTG 57.205 41.667 7.38 7.38 0.00 3.02
3036 3340 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3037 3341 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3038 3342 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
3039 3343 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3040 3344 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
3041 3345 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
3042 3346 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
3043 3347 4.755123 AGTCAAGACACTTATTTTGGGACG 59.245 41.667 2.72 0.00 0.00 4.79
3044 3348 6.635030 AAGTCAAGACACTTATTTTGGGAC 57.365 37.500 2.72 0.00 34.70 4.46
3045 3349 6.831353 TCAAAGTCAAGACACTTATTTTGGGA 59.169 34.615 2.72 0.00 35.45 4.37
3046 3350 7.038154 TCAAAGTCAAGACACTTATTTTGGG 57.962 36.000 2.72 0.00 35.45 4.12
3047 3351 9.612620 GTATCAAAGTCAAGACACTTATTTTGG 57.387 33.333 2.72 0.00 35.45 3.28
3051 3355 9.561069 AGTTGTATCAAAGTCAAGACACTTATT 57.439 29.630 2.72 0.00 35.45 1.40
3052 3356 9.561069 AAGTTGTATCAAAGTCAAGACACTTAT 57.439 29.630 2.72 0.00 35.45 1.73
3053 3357 8.958119 AAGTTGTATCAAAGTCAAGACACTTA 57.042 30.769 2.72 0.00 35.45 2.24
3054 3358 7.865706 AAGTTGTATCAAAGTCAAGACACTT 57.134 32.000 2.72 0.00 38.30 3.16
3055 3359 7.336931 ACAAAGTTGTATCAAAGTCAAGACACT 59.663 33.333 2.72 0.00 40.16 3.55
3056 3360 7.472543 ACAAAGTTGTATCAAAGTCAAGACAC 58.527 34.615 2.72 0.00 40.16 3.67
3057 3361 7.624360 ACAAAGTTGTATCAAAGTCAAGACA 57.376 32.000 2.72 0.00 40.16 3.41
3058 3362 8.827677 AGTACAAAGTTGTATCAAAGTCAAGAC 58.172 33.333 7.14 0.00 44.59 3.01
3059 3363 8.958119 AGTACAAAGTTGTATCAAAGTCAAGA 57.042 30.769 7.14 0.00 44.59 3.02
3082 3386 9.310716 GTGTCTCAACTTTGTAGTAACTTTAGT 57.689 33.333 0.00 0.00 33.17 2.24
3083 3387 9.530633 AGTGTCTCAACTTTGTAGTAACTTTAG 57.469 33.333 0.00 0.00 33.17 1.85
3084 3388 9.880157 AAGTGTCTCAACTTTGTAGTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
3085 3389 8.788325 AAGTGTCTCAACTTTGTAGTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
3091 3395 8.621286 CCAAAATAAGTGTCTCAACTTTGTAGT 58.379 33.333 0.00 0.00 40.77 2.73
3092 3396 8.076178 CCCAAAATAAGTGTCTCAACTTTGTAG 58.924 37.037 0.00 0.00 40.77 2.74
3093 3397 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3094 3398 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3095 3399 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3096 3400 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3097 3401 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3098 3402 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3099 3403 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3100 3404 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3101 3405 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
3102 3406 3.934068 TCCGTCCCAAAATAAGTGTCTC 58.066 45.455 0.00 0.00 0.00 3.36
3103 3407 4.324267 CTTCCGTCCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
3104 3408 3.439129 CCTTCCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
3105 3409 3.073356 TCCTTCCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
3106 3410 3.681593 TCCTTCCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
3107 3411 3.329814 ACTCCTTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
3108 3412 3.951663 ACTCCTTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
3109 3413 5.703730 ATACTCCTTCCGTCCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
3110 3414 6.555738 TCATATACTCCTTCCGTCCCAAAATA 59.444 38.462 0.00 0.00 0.00 1.40
3111 3415 5.368523 TCATATACTCCTTCCGTCCCAAAAT 59.631 40.000 0.00 0.00 0.00 1.82
3112 3416 4.717778 TCATATACTCCTTCCGTCCCAAAA 59.282 41.667 0.00 0.00 0.00 2.44
3113 3417 4.100498 GTCATATACTCCTTCCGTCCCAAA 59.900 45.833 0.00 0.00 0.00 3.28
3114 3418 3.640029 GTCATATACTCCTTCCGTCCCAA 59.360 47.826 0.00 0.00 0.00 4.12
3115 3419 3.228453 GTCATATACTCCTTCCGTCCCA 58.772 50.000 0.00 0.00 0.00 4.37
3116 3420 3.228453 TGTCATATACTCCTTCCGTCCC 58.772 50.000 0.00 0.00 0.00 4.46
3117 3421 4.142790 TCTGTCATATACTCCTTCCGTCC 58.857 47.826 0.00 0.00 0.00 4.79
3118 3422 5.968528 ATCTGTCATATACTCCTTCCGTC 57.031 43.478 0.00 0.00 0.00 4.79
3119 3423 8.958506 GTAATATCTGTCATATACTCCTTCCGT 58.041 37.037 0.00 0.00 0.00 4.69
3120 3424 8.957466 TGTAATATCTGTCATATACTCCTTCCG 58.043 37.037 0.00 0.00 0.00 4.30
3123 3427 9.830186 AGGTGTAATATCTGTCATATACTCCTT 57.170 33.333 0.00 0.00 29.26 3.36
3124 3428 9.249053 CAGGTGTAATATCTGTCATATACTCCT 57.751 37.037 0.00 0.00 32.48 3.69
3125 3429 9.026121 ACAGGTGTAATATCTGTCATATACTCC 57.974 37.037 0.00 0.00 37.16 3.85
3129 3433 9.908152 CGAAACAGGTGTAATATCTGTCATATA 57.092 33.333 0.00 0.00 40.41 0.86
3230 3534 4.957296 AGTATGATTACCAAAGCCCGTAG 58.043 43.478 0.00 0.00 0.00 3.51
3259 3563 3.795688 ATCATTGGGCGGAAGACATAT 57.204 42.857 0.00 0.00 45.40 1.78
3272 3576 5.587388 ATTGCACCTACAGAAATCATTGG 57.413 39.130 0.00 0.00 0.00 3.16
3276 3580 7.230510 ACAAACTTATTGCACCTACAGAAATCA 59.769 33.333 0.00 0.00 0.00 2.57
3300 3604 9.013229 ACAATATCAGCAAGAACAGAAAATACA 57.987 29.630 0.00 0.00 0.00 2.29
3301 3605 9.282247 CACAATATCAGCAAGAACAGAAAATAC 57.718 33.333 0.00 0.00 0.00 1.89
3315 3619 6.005198 TCATGCCATAATCACAATATCAGCA 58.995 36.000 0.00 0.00 0.00 4.41
3362 3666 8.523915 TGGACATGATTTTCAATAATAGCTGT 57.476 30.769 0.00 0.00 0.00 4.40
3413 3717 5.584649 TGTTATGAAATTCACGCCCTAGAAG 59.415 40.000 0.00 0.00 0.00 2.85
3497 3801 5.602628 GGTACCATCAGTAACAGGAGAATC 58.397 45.833 7.15 0.00 38.64 2.52
3640 3944 6.719370 AGAAACAAGGTTTAATATGGAGCACA 59.281 34.615 0.00 0.00 0.00 4.57
3675 3979 5.613358 AATGTAGCTCAGCAGTTTTACAC 57.387 39.130 0.00 0.00 0.00 2.90
3681 3985 4.392940 ACTGAAAATGTAGCTCAGCAGTT 58.607 39.130 0.00 0.00 40.23 3.16
3791 4095 9.522804 GGACACTCAATTACAAATAAACAACAA 57.477 29.630 0.00 0.00 0.00 2.83
3880 4185 5.538053 TGCATCCCTTCAGTTTGACAAAATA 59.462 36.000 1.27 0.00 0.00 1.40
3881 4186 4.344679 TGCATCCCTTCAGTTTGACAAAAT 59.655 37.500 1.27 0.00 0.00 1.82
3973 4611 3.129462 GGCTAGAATTTTTCTCACCTGCC 59.871 47.826 0.00 0.00 41.14 4.85
3979 4617 6.594788 ATTTGCAGGCTAGAATTTTTCTCA 57.405 33.333 0.00 0.00 41.14 3.27
4024 4662 1.975680 TCTACAGGAGTTGGAACCACC 59.024 52.381 0.00 0.00 39.54 4.61
4180 4819 4.153958 TCATCATGGCGTGTTTTGTAAC 57.846 40.909 6.60 0.00 34.75 2.50
4393 5032 1.713932 CTACACACACACGATCACACG 59.286 52.381 0.00 0.00 39.31 4.49
4394 5033 2.471370 CACTACACACACACGATCACAC 59.529 50.000 0.00 0.00 0.00 3.82
4395 5034 2.100087 ACACTACACACACACGATCACA 59.900 45.455 0.00 0.00 0.00 3.58
4396 5035 2.471370 CACACTACACACACACGATCAC 59.529 50.000 0.00 0.00 0.00 3.06
4397 5036 2.100087 ACACACTACACACACACGATCA 59.900 45.455 0.00 0.00 0.00 2.92
4398 5037 2.739292 ACACACTACACACACACGATC 58.261 47.619 0.00 0.00 0.00 3.69
4399 5038 2.882927 ACACACTACACACACACGAT 57.117 45.000 0.00 0.00 0.00 3.73
4400 5039 2.658373 AACACACTACACACACACGA 57.342 45.000 0.00 0.00 0.00 4.35
4401 5040 3.242016 CACTAACACACTACACACACACG 59.758 47.826 0.00 0.00 0.00 4.49
4402 5041 4.178540 ACACTAACACACTACACACACAC 58.821 43.478 0.00 0.00 0.00 3.82
4560 5211 7.592903 CAGAAATGAAGAACAAAAACTAGAGGC 59.407 37.037 0.00 0.00 0.00 4.70
4607 5258 7.652554 ACCCCCAAAATTAGATAAAGACAGAT 58.347 34.615 0.00 0.00 0.00 2.90
4627 5278 4.772886 ATAGTTGAATCACAGTACCCCC 57.227 45.455 0.00 0.00 0.00 5.40
4854 5505 9.435688 CCCACATTTAAAATAAAAGAAGGAAGG 57.564 33.333 0.00 0.00 0.00 3.46
4879 5530 2.222027 CACCCTTGTTGTCTCTGAACC 58.778 52.381 0.00 0.00 0.00 3.62
4974 5625 9.990360 TCATAGTAGAAGTCAACAACACAATAA 57.010 29.630 0.00 0.00 0.00 1.40
4986 5637 8.418597 AACAAGTTACCTCATAGTAGAAGTCA 57.581 34.615 0.00 0.00 0.00 3.41
5073 5724 4.171234 GAGGATGGGAATATTCCTCCTGA 58.829 47.826 34.19 16.83 46.39 3.86
5212 5863 4.528920 GCTTACCCTGTAGAGAGAGAGAA 58.471 47.826 0.00 0.00 0.00 2.87
5269 5920 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
5270 5921 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
5271 5922 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
5272 5923 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
5273 5924 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
5274 5925 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
5275 5926 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
5276 5927 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
5280 5931 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
5281 5932 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
5282 5933 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
5283 5934 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
5284 5935 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
5285 5936 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
5286 5937 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
5287 5938 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
5288 5939 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
5289 5940 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
5290 5941 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
5291 5942 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
5292 5943 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
5293 5944 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
5294 5945 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
5295 5946 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
5307 5958 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
5308 5959 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
5309 5960 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
5310 5961 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
5311 5962 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
5312 5963 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
5313 5964 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
5314 5965 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
5315 5966 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
5316 5967 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
5317 5968 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
5318 5969 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
5319 5970 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
5320 5971 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
5321 5972 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
5322 5973 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
5323 5974 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
5324 5975 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
5325 5976 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
5326 5977 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
5327 5978 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
5328 5979 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
5340 5991 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
5341 5992 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
5342 5993 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
5343 5994 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
5344 5995 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
5345 5996 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
5346 5997 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
5347 5998 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
5348 5999 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5349 6000 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5350 6001 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5351 6002 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5352 6003 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
5353 6004 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
5354 6005 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
5355 6006 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
5356 6007 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
5357 6008 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
5358 6009 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
5359 6010 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
5360 6011 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
5361 6012 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
5362 6013 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
5363 6014 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
5364 6015 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
5365 6016 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
5366 6017 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
5376 6027 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5377 6028 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5378 6029 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
5379 6030 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
5380 6031 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
5381 6032 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
5382 6033 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
5383 6034 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
5384 6035 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
5385 6036 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
5386 6037 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
5387 6038 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
5388 6039 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
5389 6040 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
5390 6041 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
5391 6042 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
5392 6043 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
5393 6044 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
5394 6045 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
5406 6057 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5409 6060 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5410 6061 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5411 6062 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5412 6063 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5418 6069 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
5419 6070 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
5420 6071 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
5421 6072 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
5422 6073 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
5440 6091 7.284034 ACAAGCCTCTTAAGAATACCATCAATG 59.716 37.037 6.63 0.00 0.00 2.82
5441 6092 7.349598 ACAAGCCTCTTAAGAATACCATCAAT 58.650 34.615 6.63 0.00 0.00 2.57
5442 6093 6.721318 ACAAGCCTCTTAAGAATACCATCAA 58.279 36.000 6.63 0.00 0.00 2.57
5443 6094 6.313519 ACAAGCCTCTTAAGAATACCATCA 57.686 37.500 6.63 0.00 0.00 3.07
5444 6095 7.439655 CAGTACAAGCCTCTTAAGAATACCATC 59.560 40.741 6.63 0.00 0.00 3.51
5445 6096 7.125811 TCAGTACAAGCCTCTTAAGAATACCAT 59.874 37.037 6.63 0.00 0.00 3.55
5451 6102 4.020485 GGGTCAGTACAAGCCTCTTAAGAA 60.020 45.833 6.63 0.00 0.00 2.52
5466 6117 3.181422 TGGAGAGTGAAGAAGGGTCAGTA 60.181 47.826 0.00 0.00 0.00 2.74
5529 6204 0.038526 ACAGGCTTCTCACGTTACGG 60.039 55.000 10.20 0.00 0.00 4.02
5530 6205 1.060713 CACAGGCTTCTCACGTTACG 58.939 55.000 2.19 2.19 0.00 3.18
5536 6211 2.935201 GACATGATCACAGGCTTCTCAC 59.065 50.000 0.00 0.00 0.00 3.51
5592 6267 8.951639 TCAAAACGTGAAGACTGTTTGCACAG 62.952 42.308 9.82 2.91 44.19 3.66
5628 6304 9.051679 TGACCGATATTATGTTAATTTGTCCTG 57.948 33.333 0.00 0.00 0.00 3.86
5724 6626 1.068474 GCTACGAACGCACAACTGAT 58.932 50.000 0.00 0.00 0.00 2.90
5734 6636 1.352156 GCCCAGTGAAGCTACGAACG 61.352 60.000 0.00 0.00 0.00 3.95
5743 6645 6.536582 CGAATTATATATGGAGCCCAGTGAAG 59.463 42.308 0.00 0.00 36.75 3.02
5748 6650 7.987458 ACATTACGAATTATATATGGAGCCCAG 59.013 37.037 0.00 0.00 36.75 4.45
5839 6742 6.371595 ACAAGAGACCTGAAATTGAGAGAT 57.628 37.500 0.00 0.00 0.00 2.75
5941 6846 0.250295 TTCTTGCCACAGACTTCCCG 60.250 55.000 0.00 0.00 0.00 5.14
5969 6874 0.179215 CGTGAAGCACTTTCCGATGC 60.179 55.000 0.00 0.00 42.39 3.91
5993 6898 2.924101 AGGTGTTAACGGGGCGGA 60.924 61.111 0.26 0.00 0.00 5.54
6382 7287 1.271054 GCTGCTGAACCTCTTGGAGAA 60.271 52.381 0.00 0.00 37.04 2.87
6445 7350 0.324285 AGCTCCTTGGAGAAGCACTG 59.676 55.000 19.85 0.00 0.00 3.66
6459 7364 2.550830 TCTTGTTGTTCCTGAGCTCC 57.449 50.000 12.15 0.00 0.00 4.70
6477 7382 0.529992 CTCGGTTGTATCGGCCCTTC 60.530 60.000 0.00 0.00 0.00 3.46
6531 7436 2.947532 TTCTGCTGCTCCTCACCCG 61.948 63.158 0.00 0.00 0.00 5.28
6558 7463 2.391469 CTGAGCCCAGCATTCTTCG 58.609 57.895 0.00 0.00 33.07 3.79
6609 7514 8.725256 TCTGTTCTCTATGTACTATACCTCCTT 58.275 37.037 0.00 0.00 0.00 3.36
6610 7515 8.277720 TCTGTTCTCTATGTACTATACCTCCT 57.722 38.462 0.00 0.00 0.00 3.69
6611 7516 8.921353 TTCTGTTCTCTATGTACTATACCTCC 57.079 38.462 0.00 0.00 0.00 4.30
6689 7594 2.991250 ACTTGCGCTTGTCAAGGATAT 58.009 42.857 14.40 0.00 43.77 1.63
6749 7654 3.125658 TCGGCTACAAAATTTAAGACGGC 59.874 43.478 18.07 7.51 40.87 5.68
6813 7722 2.035066 CCCATAATTGTAGCAAGCAGGC 59.965 50.000 0.00 0.00 0.00 4.85
6865 7774 3.788227 ATAAGAACAGAACAGGCACCA 57.212 42.857 0.00 0.00 0.00 4.17
6871 7780 4.516698 ACCAGCACAATAAGAACAGAACAG 59.483 41.667 0.00 0.00 0.00 3.16
6886 7795 1.937223 CGAACAAGTAACACCAGCACA 59.063 47.619 0.00 0.00 0.00 4.57
6909 7818 5.049828 AGAATCGACGAAATATGCACATGA 58.950 37.500 0.00 0.00 0.00 3.07
6926 7835 3.000724 GGATTGCAACTCGAGAAGAATCG 59.999 47.826 21.68 0.00 44.07 3.34
6946 7855 3.554934 ACATTTTCAGCTTGTCACAGGA 58.445 40.909 0.00 0.00 0.00 3.86
6970 7879 0.965866 TCACAGACTAGTCAGCGGGG 60.966 60.000 24.44 11.89 0.00 5.73
6971 7880 0.453793 CTCACAGACTAGTCAGCGGG 59.546 60.000 24.44 13.38 0.00 6.13
6972 7881 1.131504 GACTCACAGACTAGTCAGCGG 59.868 57.143 24.44 12.48 41.46 5.52
6975 7884 8.085296 ACAAATTAAGACTCACAGACTAGTCAG 58.915 37.037 24.44 18.88 43.74 3.51
6976 7885 7.952671 ACAAATTAAGACTCACAGACTAGTCA 58.047 34.615 24.44 3.05 43.74 3.41
6990 7957 5.451828 GGCACGAGTAGACAAATTAAGAC 57.548 43.478 0.00 0.00 0.00 3.01
7036 8006 1.542187 AAACGAAGGCGACCCTAGCT 61.542 55.000 0.00 0.00 41.90 3.32
7038 8008 0.739813 CCAAACGAAGGCGACCCTAG 60.740 60.000 0.00 0.00 41.90 3.02
7040 8010 2.032071 CCAAACGAAGGCGACCCT 59.968 61.111 0.00 0.00 45.77 4.34
7080 8095 2.251371 GCTTCGTCAACCGGTTGC 59.749 61.111 37.21 29.59 40.24 4.17
7085 8104 0.511221 ATTGAACGCTTCGTCAACCG 59.489 50.000 0.00 0.00 39.99 4.44
7107 8157 1.618837 TGGAGGCGATGTTATCTAGGC 59.381 52.381 0.00 0.00 0.00 3.93
7144 8194 4.947147 ACACAACGCCACGCCCAT 62.947 61.111 0.00 0.00 0.00 4.00
7201 8251 6.102897 AGTAAGTAGCAGTTGTGTTGATCT 57.897 37.500 0.00 0.00 0.00 2.75
7267 8318 2.764314 GGGTCATGCCGTGTCATGC 61.764 63.158 5.10 0.00 42.58 4.06
7313 8364 1.135199 TCTGATCTTACGACCGTTGCC 60.135 52.381 0.00 0.00 0.00 4.52
7320 8371 0.030908 CCGCCCTCTGATCTTACGAC 59.969 60.000 0.00 0.00 0.00 4.34
7323 8374 1.300233 CGCCGCCCTCTGATCTTAC 60.300 63.158 0.00 0.00 0.00 2.34
7325 8376 4.537433 GCGCCGCCCTCTGATCTT 62.537 66.667 0.00 0.00 0.00 2.40
7479 8543 3.550992 CGGCACATGACGTACGGC 61.551 66.667 21.06 18.72 42.66 5.68
7568 8632 1.076485 GCCCATGATCAAGCCCAGT 60.076 57.895 0.00 0.00 0.00 4.00
7570 8634 2.124193 CGCCCATGATCAAGCCCA 60.124 61.111 0.00 0.00 0.00 5.36
7572 8636 2.829914 TGCGCCCATGATCAAGCC 60.830 61.111 4.18 0.00 0.00 4.35
7574 8638 2.719979 GCTGCGCCCATGATCAAG 59.280 61.111 4.18 0.00 0.00 3.02
7575 8639 2.829914 GGCTGCGCCCATGATCAA 60.830 61.111 4.18 0.00 44.06 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.