Multiple sequence alignment - TraesCS4A01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G073300 chr4A 100.000 4674 0 0 1 4674 72292873 72297546 0.000000e+00 8632.0
1 TraesCS4A01G073300 chr4A 92.509 267 18 2 287 553 618678656 618678920 9.490000e-102 381.0
2 TraesCS4A01G073300 chr4A 91.985 262 21 0 289 550 641546265 641546526 7.390000e-98 368.0
3 TraesCS4A01G073300 chr4D 89.099 3440 161 82 599 3965 390597227 390600525 0.000000e+00 4078.0
4 TraesCS4A01G073300 chr4D 93.706 715 30 8 3968 4674 390600570 390601277 0.000000e+00 1057.0
5 TraesCS4A01G073300 chr4D 94.737 171 9 0 1 171 390596925 390597095 2.770000e-67 267.0
6 TraesCS4A01G073300 chr4B 89.031 2106 131 52 1819 3895 480591202 480593236 0.000000e+00 2518.0
7 TraesCS4A01G073300 chr4B 87.010 893 51 26 551 1421 480589948 480590797 0.000000e+00 946.0
8 TraesCS4A01G073300 chr4B 93.448 641 34 4 4038 4674 480593510 480594146 0.000000e+00 944.0
9 TraesCS4A01G073300 chr4B 94.475 362 13 2 1459 1815 480590803 480591162 6.840000e-153 551.0
10 TraesCS4A01G073300 chr4B 86.984 315 17 11 1 291 480589636 480589950 2.700000e-87 333.0
11 TraesCS4A01G073300 chr5A 91.882 271 20 2 289 558 347015981 347015712 1.230000e-100 377.0
12 TraesCS4A01G073300 chr5A 91.985 262 21 0 288 549 31225557 31225818 7.390000e-98 368.0
13 TraesCS4A01G073300 chr5A 84.234 222 31 4 1540 1759 412104199 412103980 3.660000e-51 213.0
14 TraesCS4A01G073300 chr2A 92.424 264 20 0 288 551 653300491 653300228 1.230000e-100 377.0
15 TraesCS4A01G073300 chr2A 92.105 266 20 1 288 553 652870773 652871037 1.590000e-99 374.0
16 TraesCS4A01G073300 chr1A 92.337 261 20 0 289 549 250493959 250494219 5.710000e-99 372.0
17 TraesCS4A01G073300 chr1A 91.985 262 21 0 289 550 515768879 515769140 7.390000e-98 368.0
18 TraesCS4A01G073300 chr1A 85.000 80 12 0 1338 1417 353914282 353914361 1.080000e-11 82.4
19 TraesCS4A01G073300 chr7A 92.015 263 21 0 289 551 230213901 230213639 2.050000e-98 370.0
20 TraesCS4A01G073300 chr7A 97.143 35 1 0 3214 3248 620370571 620370537 5.050000e-05 60.2
21 TraesCS4A01G073300 chr7A 97.143 35 1 0 3214 3248 620487726 620487760 5.050000e-05 60.2
22 TraesCS4A01G073300 chr2B 78.431 408 53 22 1138 1524 374241236 374240843 2.810000e-57 233.0
23 TraesCS4A01G073300 chr5B 86.567 201 23 4 1540 1738 367212635 367212437 7.870000e-53 219.0
24 TraesCS4A01G073300 chr5D 84.234 222 31 4 1540 1759 317453036 317452817 3.660000e-51 213.0
25 TraesCS4A01G073300 chr6A 83.920 199 26 5 1540 1735 491027842 491028037 7.990000e-43 185.0
26 TraesCS4A01G073300 chr6A 86.420 81 11 0 1341 1421 491027083 491027163 6.440000e-14 89.8
27 TraesCS4A01G073300 chr6B 83.417 199 27 5 1540 1735 527043564 527043759 3.720000e-41 180.0
28 TraesCS4A01G073300 chr6B 86.420 81 11 0 1341 1421 527042620 527042700 6.440000e-14 89.8
29 TraesCS4A01G073300 chr6D 82.673 202 29 5 1540 1738 351970556 351970358 1.730000e-39 174.0
30 TraesCS4A01G073300 chr6D 87.654 81 10 0 1341 1421 351971288 351971208 1.380000e-15 95.3
31 TraesCS4A01G073300 chrUn 82.812 192 29 4 1546 1735 20367270 20367459 8.040000e-38 169.0
32 TraesCS4A01G073300 chr1D 85.000 80 12 0 1338 1417 282135995 282136074 1.080000e-11 82.4
33 TraesCS4A01G073300 chr1B 83.750 80 13 0 1338 1417 383050641 383050720 5.020000e-10 76.8
34 TraesCS4A01G073300 chr7B 97.222 36 1 0 3213 3248 581373601 581373566 1.400000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G073300 chr4A 72292873 72297546 4673 False 8632.000000 8632 100.0000 1 4674 1 chr4A.!!$F1 4673
1 TraesCS4A01G073300 chr4D 390596925 390601277 4352 False 1800.666667 4078 92.5140 1 4674 3 chr4D.!!$F1 4673
2 TraesCS4A01G073300 chr4B 480589636 480594146 4510 False 1058.400000 2518 90.1896 1 4674 5 chr4B.!!$F1 4673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 273 0.034767 AGTATGGACCGGTCGAGTCA 60.035 55.0 27.68 19.83 35.89 3.41 F
900 931 0.105224 TAGAGACGAGGCGAGAGAGG 59.895 60.0 0.00 0.00 0.00 3.69 F
1859 1974 0.250234 TGATCGGCCTGAACCTTGAG 59.750 55.0 0.00 0.00 0.00 3.02 F
2594 2729 0.039708 GCTTCAACACTGCTGGCTTC 60.040 55.0 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1349 0.032540 CAAACAAACAGAGGCAGGCC 59.967 55.0 0.97 0.97 0.00 5.19 R
2388 2523 0.491823 AAGGGGGAAAAGGAAAGGGG 59.508 55.0 0.00 0.00 0.00 4.79 R
3161 3323 0.027063 GACACACCGTCAAACCAACG 59.973 55.0 0.00 0.00 44.69 4.10 R
3704 3887 0.248907 ATGACCCGATTACACGAGCG 60.249 55.0 0.00 0.00 35.09 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.851179 GGACCCCGAATGCGTCCC 62.851 72.222 0.00 0.00 40.23 4.46
153 175 4.025401 CCTGGACGTGCCGTTTGC 62.025 66.667 4.04 0.00 41.37 3.68
171 193 0.463474 GCACTCTTCCTCCTCATGCC 60.463 60.000 0.00 0.00 0.00 4.40
175 197 1.078214 CTTCCTCCTCATGCCGCAA 60.078 57.895 0.00 0.00 0.00 4.85
211 236 1.490490 CCTGGGCAGTATGTATGTGGT 59.510 52.381 0.00 0.00 39.31 4.16
217 242 3.431626 GGCAGTATGTATGTGGTGTGCTA 60.432 47.826 0.00 0.00 39.31 3.49
248 273 0.034767 AGTATGGACCGGTCGAGTCA 60.035 55.000 27.68 19.83 35.89 3.41
250 275 0.322726 TATGGACCGGTCGAGTCACA 60.323 55.000 27.68 18.74 35.89 3.58
252 277 1.372623 GGACCGGTCGAGTCACAAC 60.373 63.158 27.68 7.22 35.89 3.32
291 316 1.743995 GCGGGCATTCAACGGTACT 60.744 57.895 0.00 0.00 0.00 2.73
292 317 1.702491 GCGGGCATTCAACGGTACTC 61.702 60.000 0.00 0.00 0.00 2.59
293 318 1.087771 CGGGCATTCAACGGTACTCC 61.088 60.000 0.00 0.00 0.00 3.85
294 319 0.746923 GGGCATTCAACGGTACTCCC 60.747 60.000 0.00 0.00 0.00 4.30
295 320 0.252197 GGCATTCAACGGTACTCCCT 59.748 55.000 0.00 0.00 0.00 4.20
296 321 1.653151 GCATTCAACGGTACTCCCTC 58.347 55.000 0.00 0.00 0.00 4.30
297 322 1.742750 GCATTCAACGGTACTCCCTCC 60.743 57.143 0.00 0.00 0.00 4.30
301 326 1.680314 AACGGTACTCCCTCCGGTC 60.680 63.158 0.00 0.00 44.15 4.79
302 327 2.832201 CGGTACTCCCTCCGGTCC 60.832 72.222 0.00 0.00 42.61 4.46
303 328 2.688538 GGTACTCCCTCCGGTCCT 59.311 66.667 0.00 0.00 0.00 3.85
304 329 1.001376 GGTACTCCCTCCGGTCCTT 59.999 63.158 0.00 0.00 0.00 3.36
305 330 0.616964 GGTACTCCCTCCGGTCCTTT 60.617 60.000 0.00 0.00 0.00 3.11
306 331 1.273759 GTACTCCCTCCGGTCCTTTT 58.726 55.000 0.00 0.00 0.00 2.27
307 332 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
308 333 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
309 334 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
310 335 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
311 336 3.102204 CTCCCTCCGGTCCTTTTTACTA 58.898 50.000 0.00 0.00 0.00 1.82
312 337 3.710165 CTCCCTCCGGTCCTTTTTACTAT 59.290 47.826 0.00 0.00 0.00 2.12
313 338 3.708121 TCCCTCCGGTCCTTTTTACTATC 59.292 47.826 0.00 0.00 0.00 2.08
314 339 3.181457 CCCTCCGGTCCTTTTTACTATCC 60.181 52.174 0.00 0.00 0.00 2.59
315 340 3.453353 CCTCCGGTCCTTTTTACTATCCA 59.547 47.826 0.00 0.00 0.00 3.41
316 341 4.102681 CCTCCGGTCCTTTTTACTATCCAT 59.897 45.833 0.00 0.00 0.00 3.41
317 342 5.306160 CCTCCGGTCCTTTTTACTATCCATA 59.694 44.000 0.00 0.00 0.00 2.74
318 343 6.013639 CCTCCGGTCCTTTTTACTATCCATAT 60.014 42.308 0.00 0.00 0.00 1.78
319 344 7.383156 TCCGGTCCTTTTTACTATCCATATT 57.617 36.000 0.00 0.00 0.00 1.28
320 345 8.495160 TCCGGTCCTTTTTACTATCCATATTA 57.505 34.615 0.00 0.00 0.00 0.98
321 346 9.108111 TCCGGTCCTTTTTACTATCCATATTAT 57.892 33.333 0.00 0.00 0.00 1.28
356 381 9.631639 GAAATCAAATTTCACAAAGTTTAACCG 57.368 29.630 7.38 0.00 46.05 4.44
357 382 8.710835 AATCAAATTTCACAAAGTTTAACCGT 57.289 26.923 0.00 0.00 0.00 4.83
358 383 9.804758 AATCAAATTTCACAAAGTTTAACCGTA 57.195 25.926 0.00 0.00 0.00 4.02
359 384 9.974980 ATCAAATTTCACAAAGTTTAACCGTAT 57.025 25.926 0.00 0.00 0.00 3.06
360 385 9.804758 TCAAATTTCACAAAGTTTAACCGTATT 57.195 25.926 0.00 0.00 0.00 1.89
396 421 8.743085 AATATCAACATCTGTCATGCTAAAGT 57.257 30.769 0.00 0.00 0.00 2.66
397 422 8.743085 ATATCAACATCTGTCATGCTAAAGTT 57.257 30.769 0.00 0.00 0.00 2.66
398 423 9.836864 ATATCAACATCTGTCATGCTAAAGTTA 57.163 29.630 0.00 0.00 0.00 2.24
399 424 8.743085 ATCAACATCTGTCATGCTAAAGTTAT 57.257 30.769 0.00 0.00 0.00 1.89
400 425 9.836864 ATCAACATCTGTCATGCTAAAGTTATA 57.163 29.630 0.00 0.00 0.00 0.98
401 426 9.836864 TCAACATCTGTCATGCTAAAGTTATAT 57.163 29.630 0.00 0.00 0.00 0.86
430 455 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
431 456 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
432 457 9.208022 TGAAACTTTAAGTCATGACACATCTAG 57.792 33.333 27.02 16.90 0.00 2.43
433 458 9.209175 GAAACTTTAAGTCATGACACATCTAGT 57.791 33.333 27.02 17.46 0.00 2.57
502 527 7.173863 GTTGATCAAACTTTACGAGACTTGA 57.826 36.000 10.35 0.00 36.18 3.02
503 528 6.764877 TGATCAAACTTTACGAGACTTGAC 57.235 37.500 0.00 0.00 35.29 3.18
504 529 6.513180 TGATCAAACTTTACGAGACTTGACT 58.487 36.000 0.00 0.00 35.29 3.41
505 530 6.984474 TGATCAAACTTTACGAGACTTGACTT 59.016 34.615 0.00 0.00 35.29 3.01
506 531 6.823678 TCAAACTTTACGAGACTTGACTTC 57.176 37.500 0.00 0.00 30.89 3.01
507 532 6.334989 TCAAACTTTACGAGACTTGACTTCA 58.665 36.000 0.00 0.00 30.89 3.02
508 533 6.475727 TCAAACTTTACGAGACTTGACTTCAG 59.524 38.462 0.00 0.00 30.89 3.02
509 534 5.517322 ACTTTACGAGACTTGACTTCAGT 57.483 39.130 0.00 0.00 0.00 3.41
510 535 5.903810 ACTTTACGAGACTTGACTTCAGTT 58.096 37.500 0.00 0.00 0.00 3.16
511 536 7.035840 ACTTTACGAGACTTGACTTCAGTTA 57.964 36.000 0.00 0.00 0.00 2.24
512 537 7.486647 ACTTTACGAGACTTGACTTCAGTTAA 58.513 34.615 0.00 0.00 0.00 2.01
513 538 7.977853 ACTTTACGAGACTTGACTTCAGTTAAA 59.022 33.333 0.00 0.00 0.00 1.52
514 539 8.882415 TTTACGAGACTTGACTTCAGTTAAAT 57.118 30.769 0.00 0.00 0.00 1.40
515 540 8.516811 TTACGAGACTTGACTTCAGTTAAATC 57.483 34.615 0.00 0.00 0.00 2.17
516 541 6.750148 ACGAGACTTGACTTCAGTTAAATCT 58.250 36.000 0.00 0.00 33.76 2.40
517 542 7.210873 ACGAGACTTGACTTCAGTTAAATCTT 58.789 34.615 0.00 0.00 31.75 2.40
518 543 8.358148 ACGAGACTTGACTTCAGTTAAATCTTA 58.642 33.333 0.00 0.00 31.75 2.10
519 544 9.360093 CGAGACTTGACTTCAGTTAAATCTTAT 57.640 33.333 0.00 0.00 31.75 1.73
544 569 5.708948 TGCAAACTAAAAATGATCGAAGGG 58.291 37.500 0.00 0.00 0.00 3.95
545 570 5.475220 TGCAAACTAAAAATGATCGAAGGGA 59.525 36.000 0.00 0.00 0.00 4.20
546 571 6.030228 GCAAACTAAAAATGATCGAAGGGAG 58.970 40.000 0.00 0.00 0.00 4.30
547 572 6.349363 GCAAACTAAAAATGATCGAAGGGAGT 60.349 38.462 0.00 0.00 0.00 3.85
548 573 7.148306 GCAAACTAAAAATGATCGAAGGGAGTA 60.148 37.037 0.00 0.00 0.00 2.59
549 574 7.845066 AACTAAAAATGATCGAAGGGAGTAC 57.155 36.000 0.00 0.00 0.00 2.73
550 575 7.184067 ACTAAAAATGATCGAAGGGAGTACT 57.816 36.000 0.00 0.00 0.00 2.73
551 576 8.302515 ACTAAAAATGATCGAAGGGAGTACTA 57.697 34.615 0.00 0.00 0.00 1.82
552 577 8.196103 ACTAAAAATGATCGAAGGGAGTACTAC 58.804 37.037 0.00 0.00 0.00 2.73
576 607 6.423905 ACACAATAATAATCGAATCACCGGAG 59.576 38.462 9.46 0.00 0.00 4.63
588 619 3.048602 CCGGAGAGGTTGTGACGT 58.951 61.111 0.00 0.00 34.51 4.34
589 620 1.372997 CCGGAGAGGTTGTGACGTG 60.373 63.158 0.00 0.00 34.51 4.49
590 621 1.372997 CGGAGAGGTTGTGACGTGG 60.373 63.158 0.00 0.00 0.00 4.94
591 622 1.004918 GGAGAGGTTGTGACGTGGG 60.005 63.158 0.00 0.00 0.00 4.61
592 623 1.746517 GAGAGGTTGTGACGTGGGT 59.253 57.895 0.00 0.00 0.00 4.51
593 624 0.963962 GAGAGGTTGTGACGTGGGTA 59.036 55.000 0.00 0.00 0.00 3.69
595 626 0.677842 GAGGTTGTGACGTGGGTAGT 59.322 55.000 0.00 0.00 0.00 2.73
596 627 1.888512 GAGGTTGTGACGTGGGTAGTA 59.111 52.381 0.00 0.00 0.00 1.82
623 654 5.874261 AGGGTTTTGATTTGCGAATTAATGG 59.126 36.000 4.82 0.00 0.00 3.16
640 671 4.162690 GCGGGGCGAGAGAATGGT 62.163 66.667 0.00 0.00 0.00 3.55
641 672 2.584608 CGGGGCGAGAGAATGGTT 59.415 61.111 0.00 0.00 0.00 3.67
642 673 1.815421 CGGGGCGAGAGAATGGTTG 60.815 63.158 0.00 0.00 0.00 3.77
643 674 1.452108 GGGGCGAGAGAATGGTTGG 60.452 63.158 0.00 0.00 0.00 3.77
644 675 1.452108 GGGCGAGAGAATGGTTGGG 60.452 63.158 0.00 0.00 0.00 4.12
645 676 2.115291 GGCGAGAGAATGGTTGGGC 61.115 63.158 0.00 0.00 0.00 5.36
646 677 2.115291 GCGAGAGAATGGTTGGGCC 61.115 63.158 0.00 0.00 37.90 5.80
675 706 5.250200 GCGGGATATATTTGGTTATCCACA 58.750 41.667 10.29 0.00 43.80 4.17
696 727 1.407979 GCAATCAAGGCCTCAATCAGG 59.592 52.381 5.23 0.00 46.82 3.86
756 787 5.767816 AATTAATTAAGATCCGCCACCAC 57.232 39.130 0.00 0.00 0.00 4.16
757 788 1.663695 AATTAAGATCCGCCACCACG 58.336 50.000 0.00 0.00 0.00 4.94
787 818 3.052082 GCAGGCTGCTCGCTCAAA 61.052 61.111 31.37 0.00 40.96 2.69
788 819 2.620112 GCAGGCTGCTCGCTCAAAA 61.620 57.895 31.37 0.00 40.96 2.44
789 820 1.208614 CAGGCTGCTCGCTCAAAAC 59.791 57.895 0.00 0.00 39.13 2.43
797 828 1.663494 CTCGCTCAAAACGAAACTGC 58.337 50.000 0.00 0.00 39.39 4.40
802 833 0.306533 TCAAAACGAAACTGCGAGGC 59.693 50.000 0.00 0.00 34.83 4.70
856 887 1.747355 AGCTTCCTTTGCAATCCATCG 59.253 47.619 0.00 0.00 0.00 3.84
857 888 1.202336 GCTTCCTTTGCAATCCATCGG 60.202 52.381 0.00 0.00 0.00 4.18
858 889 0.817013 TTCCTTTGCAATCCATCGGC 59.183 50.000 0.00 0.00 0.00 5.54
877 908 1.787057 CGGCCTAGGAGTAGTCGCTG 61.787 65.000 14.75 0.00 0.00 5.18
899 930 1.202486 ACTAGAGACGAGGCGAGAGAG 60.202 57.143 0.00 0.00 0.00 3.20
900 931 0.105224 TAGAGACGAGGCGAGAGAGG 59.895 60.000 0.00 0.00 0.00 3.69
901 932 1.153329 GAGACGAGGCGAGAGAGGA 60.153 63.158 0.00 0.00 0.00 3.71
946 977 2.163412 CAGCACGATATAGAGGAGAGCC 59.837 54.545 0.00 0.00 0.00 4.70
965 996 1.758906 GAGGGGAGTCGAGGAAGGG 60.759 68.421 0.00 0.00 0.00 3.95
972 1003 0.323908 AGTCGAGGAAGGGACAGAGG 60.324 60.000 0.00 0.00 35.63 3.69
987 1018 2.041928 AGGGGAGAAGCAGGGGAG 59.958 66.667 0.00 0.00 0.00 4.30
988 1019 2.041265 GGGGAGAAGCAGGGGAGA 59.959 66.667 0.00 0.00 0.00 3.71
989 1020 2.069430 GGGGAGAAGCAGGGGAGAG 61.069 68.421 0.00 0.00 0.00 3.20
990 1021 1.002274 GGGAGAAGCAGGGGAGAGA 59.998 63.158 0.00 0.00 0.00 3.10
991 1022 0.618968 GGGAGAAGCAGGGGAGAGAA 60.619 60.000 0.00 0.00 0.00 2.87
995 1026 1.360852 AGAAGCAGGGGAGAGAAGAGA 59.639 52.381 0.00 0.00 0.00 3.10
1007 1038 2.003301 GAGAAGAGAACCAATGGCGTC 58.997 52.381 0.00 0.00 0.00 5.19
1208 1248 1.152989 CTCGACGAGAGGACCGGTAG 61.153 65.000 20.25 0.00 43.20 3.18
1221 1261 2.590092 GGTAGGTGCCCGATGCTT 59.410 61.111 0.00 0.00 42.00 3.91
1222 1262 1.523938 GGTAGGTGCCCGATGCTTC 60.524 63.158 0.00 0.00 42.00 3.86
1264 1332 3.636313 CTTGTCGCCGCCTTCCGTA 62.636 63.158 0.00 0.00 34.38 4.02
1265 1333 3.636313 TTGTCGCCGCCTTCCGTAG 62.636 63.158 0.00 0.00 34.38 3.51
1266 1334 4.125695 GTCGCCGCCTTCCGTAGT 62.126 66.667 0.00 0.00 34.38 2.73
1267 1335 3.376078 TCGCCGCCTTCCGTAGTT 61.376 61.111 0.00 0.00 34.38 2.24
1268 1336 2.884207 CGCCGCCTTCCGTAGTTC 60.884 66.667 0.00 0.00 34.38 3.01
1269 1337 2.510918 GCCGCCTTCCGTAGTTCC 60.511 66.667 0.00 0.00 34.38 3.62
1270 1338 2.202703 CCGCCTTCCGTAGTTCCG 60.203 66.667 0.00 0.00 34.38 4.30
1271 1339 2.703798 CCGCCTTCCGTAGTTCCGA 61.704 63.158 0.00 0.00 34.38 4.55
1303 1371 1.067516 CCTGCCTCTGTTTGTTTGGTG 59.932 52.381 0.00 0.00 0.00 4.17
1304 1372 1.750778 CTGCCTCTGTTTGTTTGGTGT 59.249 47.619 0.00 0.00 0.00 4.16
1305 1373 2.948979 CTGCCTCTGTTTGTTTGGTGTA 59.051 45.455 0.00 0.00 0.00 2.90
1307 1375 3.957497 TGCCTCTGTTTGTTTGGTGTATT 59.043 39.130 0.00 0.00 0.00 1.89
1308 1376 4.037446 TGCCTCTGTTTGTTTGGTGTATTC 59.963 41.667 0.00 0.00 0.00 1.75
1441 1509 6.767902 TGAGTAAACATTAGCATCATCCCTTC 59.232 38.462 0.00 0.00 0.00 3.46
1445 1513 5.894298 ACATTAGCATCATCCCTTCACTA 57.106 39.130 0.00 0.00 0.00 2.74
1455 1523 1.344438 TCCCTTCACTACACTGCACTG 59.656 52.381 0.00 0.00 0.00 3.66
1456 1524 1.151668 CCTTCACTACACTGCACTGC 58.848 55.000 0.00 0.00 0.00 4.40
1457 1525 1.541015 CCTTCACTACACTGCACTGCA 60.541 52.381 3.11 3.11 36.92 4.41
1465 1533 0.309922 CACTGCACTGCACTTCTTGG 59.690 55.000 0.00 0.00 33.79 3.61
1502 1576 2.515991 AGAGAGAGAGCGGCGAGG 60.516 66.667 12.98 0.00 0.00 4.63
1602 1681 0.471211 TGGACTTCGAGTTCCTGGGT 60.471 55.000 13.83 0.00 0.00 4.51
1764 1843 1.819632 CATCGTGTAAGCCCCTGCC 60.820 63.158 0.00 0.00 38.69 4.85
1788 1867 1.134551 GCTCTCACCTCCACCAATCTC 60.135 57.143 0.00 0.00 0.00 2.75
1794 1873 3.260884 TCACCTCCACCAATCTCACTTAC 59.739 47.826 0.00 0.00 0.00 2.34
1795 1874 3.261897 CACCTCCACCAATCTCACTTACT 59.738 47.826 0.00 0.00 0.00 2.24
1859 1974 0.250234 TGATCGGCCTGAACCTTGAG 59.750 55.000 0.00 0.00 0.00 3.02
1864 1979 0.538287 GGCCTGAACCTTGAGCAGTT 60.538 55.000 0.00 0.00 0.00 3.16
1867 1982 2.226674 GCCTGAACCTTGAGCAGTTAAC 59.773 50.000 0.00 0.00 0.00 2.01
1868 1983 2.480419 CCTGAACCTTGAGCAGTTAACG 59.520 50.000 0.00 0.00 0.00 3.18
1870 1985 3.390135 TGAACCTTGAGCAGTTAACGAG 58.610 45.455 0.00 0.00 0.00 4.18
1871 1986 3.181469 TGAACCTTGAGCAGTTAACGAGT 60.181 43.478 0.00 0.00 0.00 4.18
1974 2099 5.006746 GCCAATTACTACCTGACTTCGATTG 59.993 44.000 0.00 0.00 0.00 2.67
2003 2128 4.323792 GCTTGCTCCAGGGCTATCATTATA 60.324 45.833 0.00 0.00 0.00 0.98
2018 2143 7.012138 GCTATCATTATACAGCCAGGATCAATG 59.988 40.741 0.00 0.00 0.00 2.82
2022 2147 1.180029 ACAGCCAGGATCAATGTTGC 58.820 50.000 0.00 0.00 0.00 4.17
2023 2148 1.272313 ACAGCCAGGATCAATGTTGCT 60.272 47.619 0.00 0.00 0.00 3.91
2024 2149 1.822990 CAGCCAGGATCAATGTTGCTT 59.177 47.619 0.00 0.00 0.00 3.91
2026 2151 3.444742 CAGCCAGGATCAATGTTGCTTAA 59.555 43.478 0.00 0.00 0.00 1.85
2028 2153 3.736126 GCCAGGATCAATGTTGCTTAAGC 60.736 47.826 20.84 20.84 42.50 3.09
2029 2154 3.488047 CCAGGATCAATGTTGCTTAAGCG 60.488 47.826 21.97 7.17 45.83 4.68
2030 2155 2.684881 AGGATCAATGTTGCTTAAGCGG 59.315 45.455 21.97 7.66 45.83 5.52
2031 2156 2.454055 GATCAATGTTGCTTAAGCGGC 58.546 47.619 21.97 16.73 45.83 6.53
2032 2157 1.242989 TCAATGTTGCTTAAGCGGCA 58.757 45.000 21.97 21.32 45.83 5.69
2051 2179 4.618489 CGGCATTTCTGAATGTTTCTGAAC 59.382 41.667 8.50 0.56 44.04 3.18
2089 2217 2.989840 CTGAATTCTGTGGACACGACTC 59.010 50.000 7.05 0.32 0.00 3.36
2101 2229 1.977009 ACGACTCGTGGATGCCTGA 60.977 57.895 2.53 0.00 39.18 3.86
2109 2237 3.034924 TGGATGCCTGAACCACAAC 57.965 52.632 0.00 0.00 0.00 3.32
2149 2277 5.921976 TGTACATACAAGTTCCAAGTACACG 59.078 40.000 0.00 0.00 36.43 4.49
2220 2348 3.508793 TGCTTACAGGACACAGTACTACC 59.491 47.826 0.00 0.00 0.00 3.18
2228 2356 3.933332 GGACACAGTACTACCATCTTTGC 59.067 47.826 0.00 0.00 0.00 3.68
2236 2364 3.335579 ACTACCATCTTTGCGTCCTTTC 58.664 45.455 0.00 0.00 0.00 2.62
2363 2497 3.658709 CTGGTATTAGCTAGCTTCAGGC 58.341 50.000 24.88 9.73 42.19 4.85
2399 2534 1.076187 CTGCCTCTTCCCCTTTCCTTT 59.924 52.381 0.00 0.00 0.00 3.11
2400 2535 1.503347 TGCCTCTTCCCCTTTCCTTTT 59.497 47.619 0.00 0.00 0.00 2.27
2415 2550 5.623956 TTCCTTTTCCCCCTTTCTTTTTC 57.376 39.130 0.00 0.00 0.00 2.29
2483 2618 2.890808 TACAGATTCCTCATGCCGTC 57.109 50.000 0.00 0.00 0.00 4.79
2577 2712 3.528370 CTGCCCCGCTACTACGCT 61.528 66.667 0.00 0.00 0.00 5.07
2594 2729 0.039708 GCTTCAACACTGCTGGCTTC 60.040 55.000 0.00 0.00 0.00 3.86
2595 2730 1.311859 CTTCAACACTGCTGGCTTCA 58.688 50.000 0.00 0.00 0.00 3.02
2598 2733 1.405105 TCAACACTGCTGGCTTCAAAC 59.595 47.619 0.00 0.00 0.00 2.93
2624 2759 9.647679 CAAGAAACATCGATCTCAATATCAAAG 57.352 33.333 0.00 0.00 0.00 2.77
2653 2788 7.749377 TTATTTCTTCCTCCACCTGATCTAA 57.251 36.000 0.00 0.00 0.00 2.10
2725 2885 4.811024 CACACACACTTACTCACAGTCATT 59.189 41.667 0.00 0.00 0.00 2.57
2797 2958 1.153168 ATGAGAAATGGGGGCGTCG 60.153 57.895 0.00 0.00 0.00 5.12
2928 3089 1.598701 GCCGCTGCCTTTTCCTCATT 61.599 55.000 0.00 0.00 0.00 2.57
2941 3102 1.074405 TCCTCATTGCACCTGCTTTCT 59.926 47.619 0.00 0.00 42.66 2.52
2944 3105 0.529378 CATTGCACCTGCTTTCTCCC 59.471 55.000 0.00 0.00 42.66 4.30
2946 3107 1.719063 TTGCACCTGCTTTCTCCCCT 61.719 55.000 0.00 0.00 42.66 4.79
3016 3177 0.696501 TGGGGAAGAAAGCTACCACC 59.303 55.000 0.00 0.00 0.00 4.61
3017 3178 0.696501 GGGGAAGAAAGCTACCACCA 59.303 55.000 0.00 0.00 0.00 4.17
3018 3179 1.613520 GGGGAAGAAAGCTACCACCAC 60.614 57.143 0.00 0.00 0.00 4.16
3019 3180 1.613520 GGGAAGAAAGCTACCACCACC 60.614 57.143 0.00 0.00 0.00 4.61
3023 3184 0.400594 GAAAGCTACCACCACCACCT 59.599 55.000 0.00 0.00 0.00 4.00
3104 3266 0.540365 ACATGCCCAACCCAAGTCTG 60.540 55.000 0.00 0.00 0.00 3.51
3161 3323 2.166870 TGTTGGATGCTTGGATTGATGC 59.833 45.455 0.00 0.00 0.00 3.91
3162 3324 1.026584 TGGATGCTTGGATTGATGCG 58.973 50.000 0.00 0.00 0.00 4.73
3163 3325 1.027357 GGATGCTTGGATTGATGCGT 58.973 50.000 0.00 0.00 0.00 5.24
3167 3329 0.527565 GCTTGGATTGATGCGTTGGT 59.472 50.000 0.00 0.00 0.00 3.67
3172 3334 2.030363 TGGATTGATGCGTTGGTTTGAC 60.030 45.455 0.00 0.00 0.00 3.18
3173 3335 2.241722 GATTGATGCGTTGGTTTGACG 58.758 47.619 0.00 0.00 43.04 4.35
3187 3349 4.724022 GACGGTGTGTCTGACGTT 57.276 55.556 2.98 0.00 44.58 3.99
3188 3350 2.967740 GACGGTGTGTCTGACGTTT 58.032 52.632 2.98 0.00 44.58 3.60
3189 3351 1.283736 GACGGTGTGTCTGACGTTTT 58.716 50.000 2.98 0.00 44.58 2.43
3192 3354 1.395608 CGGTGTGTCTGACGTTTTTGT 59.604 47.619 2.98 0.00 0.00 2.83
3193 3355 2.780993 GGTGTGTCTGACGTTTTTGTG 58.219 47.619 2.98 0.00 0.00 3.33
3195 3357 3.160545 GTGTGTCTGACGTTTTTGTGTG 58.839 45.455 2.98 0.00 0.00 3.82
3196 3358 2.809119 TGTGTCTGACGTTTTTGTGTGT 59.191 40.909 2.98 0.00 0.00 3.72
3197 3359 3.160545 GTGTCTGACGTTTTTGTGTGTG 58.839 45.455 2.98 0.00 0.00 3.82
3198 3360 2.809119 TGTCTGACGTTTTTGTGTGTGT 59.191 40.909 2.98 0.00 0.00 3.72
3201 3363 2.908009 CTGACGTTTTTGTGTGTGTGTG 59.092 45.455 0.00 0.00 0.00 3.82
3408 3572 3.062466 CACCGACCTCGAGCTCCA 61.062 66.667 6.99 0.00 43.02 3.86
3427 3597 2.829914 GGCTGCGCCCATGATCAA 60.830 61.111 4.18 0.00 44.06 2.57
3428 3598 2.719979 GCTGCGCCCATGATCAAG 59.280 61.111 4.18 0.00 0.00 3.02
3429 3599 2.719979 CTGCGCCCATGATCAAGC 59.280 61.111 4.18 2.33 0.00 4.01
3430 3600 2.829914 TGCGCCCATGATCAAGCC 60.830 61.111 4.18 0.00 0.00 4.35
3431 3601 3.599704 GCGCCCATGATCAAGCCC 61.600 66.667 0.00 0.00 0.00 5.19
3432 3602 2.124193 CGCCCATGATCAAGCCCA 60.124 61.111 0.00 0.00 0.00 5.36
3433 3603 2.191513 CGCCCATGATCAAGCCCAG 61.192 63.158 0.00 0.00 0.00 4.45
3434 3604 1.076485 GCCCATGATCAAGCCCAGT 60.076 57.895 0.00 0.00 0.00 4.00
3523 3693 3.550992 CGGCACATGACGTACGGC 61.551 66.667 21.06 18.72 42.66 5.68
3677 3860 4.537433 GCGCCGCCCTCTGATCTT 62.537 66.667 0.00 0.00 0.00 2.40
3679 3862 1.300233 CGCCGCCCTCTGATCTTAC 60.300 63.158 0.00 0.00 0.00 2.34
3682 3865 0.030908 CCGCCCTCTGATCTTACGAC 59.969 60.000 0.00 0.00 0.00 4.34
3689 3872 1.135199 TCTGATCTTACGACCGTTGCC 60.135 52.381 0.00 0.00 0.00 4.52
3735 3918 2.764314 GGGTCATGCCGTGTCATGC 61.764 63.158 5.10 0.00 42.58 4.06
3736 3919 2.039974 GGTCATGCCGTGTCATGCA 61.040 57.895 0.00 0.00 42.58 3.96
3739 3922 4.324471 ATGCCGTGTCATGCATGT 57.676 50.000 25.43 1.24 45.96 3.21
3740 3923 1.804598 ATGCCGTGTCATGCATGTG 59.195 52.632 25.43 13.78 45.96 3.21
3741 3924 0.961857 ATGCCGTGTCATGCATGTGT 60.962 50.000 25.43 2.47 45.96 3.72
3742 3925 0.321122 TGCCGTGTCATGCATGTGTA 60.321 50.000 25.43 10.85 31.31 2.90
3743 3926 0.801872 GCCGTGTCATGCATGTGTAA 59.198 50.000 25.43 4.01 32.30 2.41
3744 3927 1.465689 GCCGTGTCATGCATGTGTAAC 60.466 52.381 25.43 16.61 32.30 2.50
3745 3928 1.201910 CCGTGTCATGCATGTGTAACG 60.202 52.381 25.43 25.20 42.39 3.18
3746 3929 1.459209 CGTGTCATGCATGTGTAACGT 59.541 47.619 25.43 0.00 42.39 3.99
3801 3984 6.102897 AGTAAGTAGCAGTTGTGTTGATCT 57.897 37.500 0.00 0.00 0.00 2.75
3858 4041 4.947147 ACACAACGCCACGCCCAT 62.947 61.111 0.00 0.00 0.00 4.00
3895 4078 1.618837 TGGAGGCGATGTTATCTAGGC 59.381 52.381 0.00 0.00 0.00 3.93
3917 4131 0.511221 ATTGAACGCTTCGTCAACCG 59.489 50.000 0.00 0.00 39.99 4.44
3922 4136 2.251371 GCTTCGTCAACCGGTTGC 59.749 61.111 37.21 29.59 40.24 4.17
3962 4180 2.032071 CCAAACGAAGGCGACCCT 59.968 61.111 0.00 0.00 45.77 4.34
3963 4181 1.294138 CCAAACGAAGGCGACCCTA 59.706 57.895 0.00 0.00 41.90 3.53
3964 4182 0.739813 CCAAACGAAGGCGACCCTAG 60.740 60.000 0.00 0.00 41.90 3.02
3965 4183 1.079336 AAACGAAGGCGACCCTAGC 60.079 57.895 0.00 0.00 41.90 3.42
4012 4278 5.451828 GGCACGAGTAGACAAATTAAGAC 57.548 43.478 0.00 0.00 0.00 3.01
4026 4292 7.952671 ACAAATTAAGACTCACAGACTAGTCA 58.047 34.615 24.44 3.05 43.74 3.41
4028 4294 5.630661 TTAAGACTCACAGACTAGTCAGC 57.369 43.478 24.44 9.25 43.74 4.26
4029 4295 2.080693 AGACTCACAGACTAGTCAGCG 58.919 52.381 24.44 11.11 43.74 5.18
4030 4296 1.131504 GACTCACAGACTAGTCAGCGG 59.868 57.143 24.44 12.48 41.46 5.52
4033 4299 2.352032 ACAGACTAGTCAGCGGGGC 61.352 63.158 24.44 0.00 0.00 5.80
4056 4380 3.554934 ACATTTTCAGCTTGTCACAGGA 58.445 40.909 0.00 0.00 0.00 3.86
4076 4400 3.000724 GGATTGCAACTCGAGAAGAATCG 59.999 47.826 21.68 0.00 44.07 3.34
4093 4417 5.049828 AGAATCGACGAAATATGCACATGA 58.950 37.500 0.00 0.00 0.00 3.07
4116 4440 1.937223 CGAACAAGTAACACCAGCACA 59.063 47.619 0.00 0.00 0.00 4.57
4131 4455 4.516698 ACCAGCACAATAAGAACAGAACAG 59.483 41.667 0.00 0.00 0.00 3.16
4137 4461 3.788227 ATAAGAACAGAACAGGCACCA 57.212 42.857 0.00 0.00 0.00 4.17
4189 4513 2.035066 CCCATAATTGTAGCAAGCAGGC 59.965 50.000 0.00 0.00 0.00 4.85
4253 4581 3.125658 TCGGCTACAAAATTTAAGACGGC 59.874 43.478 18.07 7.51 40.87 5.68
4313 4641 2.991250 ACTTGCGCTTGTCAAGGATAT 58.009 42.857 14.40 0.00 43.77 1.63
4391 4719 8.921353 TTCTGTTCTCTATGTACTATACCTCC 57.079 38.462 0.00 0.00 0.00 4.30
4392 4720 8.277720 TCTGTTCTCTATGTACTATACCTCCT 57.722 38.462 0.00 0.00 0.00 3.69
4393 4721 8.725256 TCTGTTCTCTATGTACTATACCTCCTT 58.275 37.037 0.00 0.00 0.00 3.36
4444 4772 2.391469 CTGAGCCCAGCATTCTTCG 58.609 57.895 0.00 0.00 33.07 3.79
4471 4799 2.947532 TTCTGCTGCTCCTCACCCG 61.948 63.158 0.00 0.00 0.00 5.28
4525 4853 0.529992 CTCGGTTGTATCGGCCCTTC 60.530 60.000 0.00 0.00 0.00 3.46
4543 4871 2.550830 TCTTGTTGTTCCTGAGCTCC 57.449 50.000 12.15 0.00 0.00 4.70
4557 4885 0.324285 AGCTCCTTGGAGAAGCACTG 59.676 55.000 19.85 0.00 0.00 3.66
4620 4948 1.271054 GCTGCTGAACCTCTTGGAGAA 60.271 52.381 0.00 0.00 37.04 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.153628 CATTCGGGGTCCAGACGAC 60.154 63.158 2.50 0.00 41.15 4.34
94 116 2.816689 TCGACGTATTGTAGCATTGGG 58.183 47.619 0.00 0.00 0.00 4.12
153 175 0.179089 CGGCATGAGGAGGAAGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
194 216 2.288666 CACACCACATACATACTGCCC 58.711 52.381 0.00 0.00 0.00 5.36
197 219 5.175127 TGTTAGCACACCACATACATACTG 58.825 41.667 0.00 0.00 0.00 2.74
217 242 3.181475 CGGTCCATACTGATACTGCTGTT 60.181 47.826 0.09 0.00 33.42 3.16
294 319 4.748277 TGGATAGTAAAAAGGACCGGAG 57.252 45.455 9.46 0.00 0.00 4.63
295 320 7.383156 AATATGGATAGTAAAAAGGACCGGA 57.617 36.000 9.46 0.00 0.00 5.14
330 355 9.631639 CGGTTAAACTTTGTGAAATTTGATTTC 57.368 29.630 0.00 6.48 46.75 2.17
331 356 9.157104 ACGGTTAAACTTTGTGAAATTTGATTT 57.843 25.926 0.00 0.00 34.64 2.17
332 357 8.710835 ACGGTTAAACTTTGTGAAATTTGATT 57.289 26.923 0.00 0.00 0.00 2.57
333 358 9.974980 ATACGGTTAAACTTTGTGAAATTTGAT 57.025 25.926 0.00 0.00 0.00 2.57
334 359 9.804758 AATACGGTTAAACTTTGTGAAATTTGA 57.195 25.926 0.00 0.00 0.00 2.69
370 395 9.182214 ACTTTAGCATGACAGATGTTGATATTT 57.818 29.630 0.00 0.00 0.00 1.40
371 396 8.743085 ACTTTAGCATGACAGATGTTGATATT 57.257 30.769 0.00 0.00 0.00 1.28
372 397 8.743085 AACTTTAGCATGACAGATGTTGATAT 57.257 30.769 0.00 0.00 0.00 1.63
373 398 9.836864 ATAACTTTAGCATGACAGATGTTGATA 57.163 29.630 0.00 0.00 0.00 2.15
374 399 8.743085 ATAACTTTAGCATGACAGATGTTGAT 57.257 30.769 0.00 0.00 0.00 2.57
375 400 9.836864 ATATAACTTTAGCATGACAGATGTTGA 57.163 29.630 0.00 0.00 0.00 3.18
404 429 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
405 430 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
406 431 9.208022 CTAGATGTGTCATGACTTAAAGTTTCA 57.792 33.333 25.55 11.05 0.00 2.69
407 432 9.209175 ACTAGATGTGTCATGACTTAAAGTTTC 57.791 33.333 25.55 11.27 0.00 2.78
408 433 8.993121 CACTAGATGTGTCATGACTTAAAGTTT 58.007 33.333 25.55 7.45 41.53 2.66
409 434 8.367911 TCACTAGATGTGTCATGACTTAAAGTT 58.632 33.333 25.55 8.77 46.27 2.66
410 435 7.896811 TCACTAGATGTGTCATGACTTAAAGT 58.103 34.615 25.55 17.09 46.27 2.66
411 436 8.939201 ATCACTAGATGTGTCATGACTTAAAG 57.061 34.615 25.55 16.54 46.27 1.85
414 439 9.971922 CAATATCACTAGATGTGTCATGACTTA 57.028 33.333 25.55 15.01 46.27 2.24
415 440 8.699130 TCAATATCACTAGATGTGTCATGACTT 58.301 33.333 25.55 11.29 46.27 3.01
416 441 8.242729 TCAATATCACTAGATGTGTCATGACT 57.757 34.615 25.55 6.60 46.27 3.41
417 442 9.486497 AATCAATATCACTAGATGTGTCATGAC 57.514 33.333 19.27 19.27 46.27 3.06
478 503 7.042658 AGTCAAGTCTCGTAAAGTTTGATCAAC 60.043 37.037 7.89 3.85 34.55 3.18
479 504 6.984474 AGTCAAGTCTCGTAAAGTTTGATCAA 59.016 34.615 3.38 3.38 34.55 2.57
480 505 6.513180 AGTCAAGTCTCGTAAAGTTTGATCA 58.487 36.000 0.00 0.00 34.55 2.92
481 506 7.169308 TGAAGTCAAGTCTCGTAAAGTTTGATC 59.831 37.037 0.00 0.00 34.55 2.92
482 507 6.984474 TGAAGTCAAGTCTCGTAAAGTTTGAT 59.016 34.615 0.00 0.00 34.55 2.57
483 508 6.334989 TGAAGTCAAGTCTCGTAAAGTTTGA 58.665 36.000 0.00 0.00 31.73 2.69
484 509 6.255887 ACTGAAGTCAAGTCTCGTAAAGTTTG 59.744 38.462 0.00 0.00 0.00 2.93
485 510 6.338937 ACTGAAGTCAAGTCTCGTAAAGTTT 58.661 36.000 0.00 0.00 0.00 2.66
486 511 5.903810 ACTGAAGTCAAGTCTCGTAAAGTT 58.096 37.500 0.00 0.00 0.00 2.66
487 512 5.517322 ACTGAAGTCAAGTCTCGTAAAGT 57.483 39.130 0.00 0.00 0.00 2.66
488 513 7.925703 TTAACTGAAGTCAAGTCTCGTAAAG 57.074 36.000 0.00 0.00 0.00 1.85
489 514 8.882415 ATTTAACTGAAGTCAAGTCTCGTAAA 57.118 30.769 0.00 0.00 0.00 2.01
490 515 8.358148 AGATTTAACTGAAGTCAAGTCTCGTAA 58.642 33.333 0.00 0.00 0.00 3.18
491 516 7.883217 AGATTTAACTGAAGTCAAGTCTCGTA 58.117 34.615 0.00 0.00 0.00 3.43
492 517 6.750148 AGATTTAACTGAAGTCAAGTCTCGT 58.250 36.000 0.00 0.00 0.00 4.18
493 518 7.644986 AAGATTTAACTGAAGTCAAGTCTCG 57.355 36.000 0.00 0.00 0.00 4.04
518 543 8.137437 CCCTTCGATCATTTTTAGTTTGCATAT 58.863 33.333 0.00 0.00 0.00 1.78
519 544 7.338196 TCCCTTCGATCATTTTTAGTTTGCATA 59.662 33.333 0.00 0.00 0.00 3.14
520 545 6.152661 TCCCTTCGATCATTTTTAGTTTGCAT 59.847 34.615 0.00 0.00 0.00 3.96
521 546 5.475220 TCCCTTCGATCATTTTTAGTTTGCA 59.525 36.000 0.00 0.00 0.00 4.08
522 547 5.949735 TCCCTTCGATCATTTTTAGTTTGC 58.050 37.500 0.00 0.00 0.00 3.68
523 548 7.145932 ACTCCCTTCGATCATTTTTAGTTTG 57.854 36.000 0.00 0.00 0.00 2.93
524 549 8.101419 AGTACTCCCTTCGATCATTTTTAGTTT 58.899 33.333 0.00 0.00 0.00 2.66
525 550 7.621796 AGTACTCCCTTCGATCATTTTTAGTT 58.378 34.615 0.00 0.00 0.00 2.24
526 551 7.184067 AGTACTCCCTTCGATCATTTTTAGT 57.816 36.000 0.00 0.00 0.00 2.24
527 552 8.195436 TGTAGTACTCCCTTCGATCATTTTTAG 58.805 37.037 0.00 0.00 0.00 1.85
528 553 7.977853 GTGTAGTACTCCCTTCGATCATTTTTA 59.022 37.037 0.00 0.00 0.00 1.52
529 554 6.817140 GTGTAGTACTCCCTTCGATCATTTTT 59.183 38.462 0.00 0.00 0.00 1.94
530 555 6.070995 TGTGTAGTACTCCCTTCGATCATTTT 60.071 38.462 0.00 0.00 0.00 1.82
531 556 5.421056 TGTGTAGTACTCCCTTCGATCATTT 59.579 40.000 0.00 0.00 0.00 2.32
532 557 4.954202 TGTGTAGTACTCCCTTCGATCATT 59.046 41.667 0.00 0.00 0.00 2.57
533 558 4.533815 TGTGTAGTACTCCCTTCGATCAT 58.466 43.478 0.00 0.00 0.00 2.45
534 559 3.959293 TGTGTAGTACTCCCTTCGATCA 58.041 45.455 0.00 0.00 0.00 2.92
535 560 4.978083 TTGTGTAGTACTCCCTTCGATC 57.022 45.455 0.00 0.00 0.00 3.69
536 561 7.598759 ATTATTGTGTAGTACTCCCTTCGAT 57.401 36.000 0.00 0.00 0.00 3.59
537 562 8.523915 TTATTATTGTGTAGTACTCCCTTCGA 57.476 34.615 0.00 0.00 0.00 3.71
538 563 9.408069 GATTATTATTGTGTAGTACTCCCTTCG 57.592 37.037 0.00 0.00 0.00 3.79
539 564 9.408069 CGATTATTATTGTGTAGTACTCCCTTC 57.592 37.037 0.00 0.00 0.00 3.46
540 565 9.139734 TCGATTATTATTGTGTAGTACTCCCTT 57.860 33.333 0.00 0.00 0.00 3.95
541 566 8.701908 TCGATTATTATTGTGTAGTACTCCCT 57.298 34.615 0.00 0.00 0.00 4.20
542 567 9.924650 ATTCGATTATTATTGTGTAGTACTCCC 57.075 33.333 0.00 0.00 0.00 4.30
547 572 9.401873 CGGTGATTCGATTATTATTGTGTAGTA 57.598 33.333 0.00 0.00 0.00 1.82
548 573 7.384115 CCGGTGATTCGATTATTATTGTGTAGT 59.616 37.037 0.00 0.00 0.00 2.73
549 574 7.597369 TCCGGTGATTCGATTATTATTGTGTAG 59.403 37.037 0.00 0.00 0.00 2.74
550 575 7.435305 TCCGGTGATTCGATTATTATTGTGTA 58.565 34.615 0.00 0.00 0.00 2.90
551 576 6.285224 TCCGGTGATTCGATTATTATTGTGT 58.715 36.000 0.00 0.00 0.00 3.72
552 577 6.645003 TCTCCGGTGATTCGATTATTATTGTG 59.355 38.462 0.00 0.00 0.00 3.33
576 607 0.677842 ACTACCCACGTCACAACCTC 59.322 55.000 0.00 0.00 0.00 3.85
585 616 2.907458 AACCCTAGTACTACCCACGT 57.093 50.000 0.00 0.00 0.00 4.49
586 617 3.511146 TCAAAACCCTAGTACTACCCACG 59.489 47.826 0.00 0.00 0.00 4.94
587 618 5.688814 ATCAAAACCCTAGTACTACCCAC 57.311 43.478 0.00 0.00 0.00 4.61
588 619 6.478129 CAAATCAAAACCCTAGTACTACCCA 58.522 40.000 0.00 0.00 0.00 4.51
589 620 5.356190 GCAAATCAAAACCCTAGTACTACCC 59.644 44.000 0.00 0.00 0.00 3.69
590 621 5.064325 CGCAAATCAAAACCCTAGTACTACC 59.936 44.000 0.00 0.00 0.00 3.18
591 622 5.870978 TCGCAAATCAAAACCCTAGTACTAC 59.129 40.000 0.00 0.00 0.00 2.73
592 623 6.040209 TCGCAAATCAAAACCCTAGTACTA 57.960 37.500 1.89 1.89 0.00 1.82
593 624 4.901868 TCGCAAATCAAAACCCTAGTACT 58.098 39.130 0.00 0.00 0.00 2.73
595 626 6.827586 AATTCGCAAATCAAAACCCTAGTA 57.172 33.333 0.00 0.00 0.00 1.82
596 627 5.722021 AATTCGCAAATCAAAACCCTAGT 57.278 34.783 0.00 0.00 0.00 2.57
623 654 3.682292 AACCATTCTCTCGCCCCGC 62.682 63.158 0.00 0.00 0.00 6.13
645 676 2.760092 CCAAATATATCCCGCCCAATGG 59.240 50.000 0.00 0.00 0.00 3.16
646 677 3.430453 ACCAAATATATCCCGCCCAATG 58.570 45.455 0.00 0.00 0.00 2.82
647 678 3.825908 ACCAAATATATCCCGCCCAAT 57.174 42.857 0.00 0.00 0.00 3.16
675 706 2.376109 CTGATTGAGGCCTTGATTGCT 58.624 47.619 6.77 0.00 0.00 3.91
696 727 7.091443 CCAATTACTTAGACAGGATCCGTATC 58.909 42.308 5.98 5.47 0.00 2.24
785 816 1.278637 CGCCTCGCAGTTTCGTTTT 59.721 52.632 0.00 0.00 0.00 2.43
786 817 2.935955 CGCCTCGCAGTTTCGTTT 59.064 55.556 0.00 0.00 0.00 3.60
797 828 2.622903 TTATCGGGAGTTGCGCCTCG 62.623 60.000 4.18 0.00 31.98 4.63
802 833 1.789054 GCGTTTTTATCGGGAGTTGCG 60.789 52.381 0.00 0.00 0.00 4.85
856 887 2.553727 CGACTACTCCTAGGCCGCC 61.554 68.421 2.96 0.00 0.00 6.13
857 888 3.032339 CGACTACTCCTAGGCCGC 58.968 66.667 2.96 0.00 0.00 6.53
858 889 1.526455 AGCGACTACTCCTAGGCCG 60.526 63.158 2.96 0.00 0.00 6.13
877 908 1.090625 TCTCGCCTCGTCTCTAGTGC 61.091 60.000 0.00 0.00 0.00 4.40
946 977 2.122167 CCTTCCTCGACTCCCCTCG 61.122 68.421 0.00 0.00 34.83 4.63
965 996 1.621672 CCCTGCTTCTCCCCTCTGTC 61.622 65.000 0.00 0.00 0.00 3.51
972 1003 0.618968 TTCTCTCCCCTGCTTCTCCC 60.619 60.000 0.00 0.00 0.00 4.30
987 1018 2.003301 GACGCCATTGGTTCTCTTCTC 58.997 52.381 4.26 0.00 0.00 2.87
988 1019 1.625818 AGACGCCATTGGTTCTCTTCT 59.374 47.619 4.26 0.00 0.00 2.85
989 1020 2.003301 GAGACGCCATTGGTTCTCTTC 58.997 52.381 20.79 3.76 33.83 2.87
990 1021 1.673033 CGAGACGCCATTGGTTCTCTT 60.673 52.381 23.30 2.31 34.19 2.85
991 1022 0.108615 CGAGACGCCATTGGTTCTCT 60.109 55.000 23.30 13.53 34.19 3.10
1012 1043 2.726351 GGAGGACGGCCAAGAGGAG 61.726 68.421 11.69 0.00 36.89 3.69
1070 1101 2.901042 GGACCATGACCTCGTCCC 59.099 66.667 6.79 0.00 40.23 4.46
1239 1293 2.665185 GCGGCGACAAGAACAGGT 60.665 61.111 12.98 0.00 0.00 4.00
1242 1296 1.959226 GAAGGCGGCGACAAGAACA 60.959 57.895 18.30 0.00 0.00 3.18
1270 1338 2.031768 GCAGGCCCGATGAGGATC 59.968 66.667 0.00 0.00 45.00 3.36
1271 1339 3.564218 GGCAGGCCCGATGAGGAT 61.564 66.667 0.00 0.00 45.00 3.24
1281 1349 0.032540 CAAACAAACAGAGGCAGGCC 59.967 55.000 0.97 0.97 0.00 5.19
1303 1371 0.831307 ACCCGGAGCCTGAAGAATAC 59.169 55.000 0.73 0.00 0.00 1.89
1304 1372 1.485066 GAACCCGGAGCCTGAAGAATA 59.515 52.381 0.73 0.00 0.00 1.75
1305 1373 0.253327 GAACCCGGAGCCTGAAGAAT 59.747 55.000 0.73 0.00 0.00 2.40
1307 1375 2.646175 CGAACCCGGAGCCTGAAGA 61.646 63.158 0.73 0.00 0.00 2.87
1308 1376 2.125512 CGAACCCGGAGCCTGAAG 60.126 66.667 0.73 0.00 0.00 3.02
1352 1420 1.022982 TTGATGCTGGCGCTGAAGAG 61.023 55.000 7.64 0.00 36.97 2.85
1427 1495 4.100035 CAGTGTAGTGAAGGGATGATGCTA 59.900 45.833 0.00 0.00 0.00 3.49
1428 1496 3.110705 AGTGTAGTGAAGGGATGATGCT 58.889 45.455 0.00 0.00 0.00 3.79
1429 1497 3.201290 CAGTGTAGTGAAGGGATGATGC 58.799 50.000 0.00 0.00 0.00 3.91
1430 1498 3.201290 GCAGTGTAGTGAAGGGATGATG 58.799 50.000 0.00 0.00 0.00 3.07
1431 1499 2.840038 TGCAGTGTAGTGAAGGGATGAT 59.160 45.455 0.00 0.00 0.00 2.45
1432 1500 2.028112 GTGCAGTGTAGTGAAGGGATGA 60.028 50.000 0.00 0.00 0.00 2.92
1441 1509 1.528586 GAAGTGCAGTGCAGTGTAGTG 59.471 52.381 25.71 11.37 41.77 2.74
1445 1513 1.019673 CAAGAAGTGCAGTGCAGTGT 58.980 50.000 25.71 15.37 41.77 3.55
1455 1523 2.098443 TCGGTTGTTTTCCAAGAAGTGC 59.902 45.455 0.00 0.00 32.51 4.40
1456 1524 4.202010 ACATCGGTTGTTTTCCAAGAAGTG 60.202 41.667 0.00 0.00 33.74 3.16
1457 1525 3.951680 ACATCGGTTGTTTTCCAAGAAGT 59.048 39.130 0.00 0.00 33.74 3.01
1465 1533 5.041951 TCTGCATTACATCGGTTGTTTTC 57.958 39.130 0.00 0.00 39.87 2.29
1502 1576 7.360017 GCAATGCCAAAGTTTGTTAGTAATTCC 60.360 37.037 14.36 0.00 0.00 3.01
1602 1681 1.621814 CACTCCTTCCCCTTGACGTTA 59.378 52.381 0.00 0.00 0.00 3.18
1764 1843 3.775654 GTGGAGGTGAGAGCGGGG 61.776 72.222 0.00 0.00 0.00 5.73
1775 1854 3.772025 AGAGTAAGTGAGATTGGTGGAGG 59.228 47.826 0.00 0.00 0.00 4.30
1788 1867 5.466432 TCGATCACGAGTAAGAGTAAGTG 57.534 43.478 0.00 0.00 43.81 3.16
1859 1974 5.006358 TGAAGTTCTGAAACTCGTTAACTGC 59.994 40.000 4.17 0.00 45.07 4.40
1864 1979 5.977725 CAGTCTGAAGTTCTGAAACTCGTTA 59.022 40.000 13.39 0.00 45.07 3.18
1867 1982 3.738282 CCAGTCTGAAGTTCTGAAACTCG 59.262 47.826 13.39 0.00 45.07 4.18
1868 1983 4.061596 CCCAGTCTGAAGTTCTGAAACTC 58.938 47.826 13.39 2.66 45.07 3.01
1870 1985 4.061596 CTCCCAGTCTGAAGTTCTGAAAC 58.938 47.826 13.39 4.15 35.50 2.78
1871 1986 3.495100 GCTCCCAGTCTGAAGTTCTGAAA 60.495 47.826 13.39 0.00 0.00 2.69
1974 2099 2.438075 CCTGGAGCAAGCAGAGCC 60.438 66.667 0.00 0.00 0.00 4.70
2003 2128 1.180029 GCAACATTGATCCTGGCTGT 58.820 50.000 0.00 0.00 0.00 4.40
2018 2143 2.095263 TCAGAAATGCCGCTTAAGCAAC 60.095 45.455 26.29 17.44 44.83 4.17
2022 2147 4.361451 ACATTCAGAAATGCCGCTTAAG 57.639 40.909 0.00 0.00 45.16 1.85
2023 2148 4.782019 AACATTCAGAAATGCCGCTTAA 57.218 36.364 0.00 0.00 45.16 1.85
2024 2149 4.458989 AGAAACATTCAGAAATGCCGCTTA 59.541 37.500 0.00 0.00 45.16 3.09
2026 2151 2.821969 AGAAACATTCAGAAATGCCGCT 59.178 40.909 0.00 0.00 45.16 5.52
2028 2153 4.424061 TCAGAAACATTCAGAAATGCCG 57.576 40.909 0.00 0.00 45.16 5.69
2029 2154 5.776744 AGTTCAGAAACATTCAGAAATGCC 58.223 37.500 0.36 0.00 45.16 4.40
2030 2155 8.976986 AATAGTTCAGAAACATTCAGAAATGC 57.023 30.769 7.98 0.00 45.16 3.56
2089 2217 3.578456 GTGGTTCAGGCATCCACG 58.422 61.111 0.00 0.00 41.37 4.94
2109 2237 3.708890 TGTACAAAGTACACGACCACAG 58.291 45.455 5.94 0.00 0.00 3.66
2149 2277 4.494199 GGATCACTAATTTGCTGCGTACAC 60.494 45.833 0.00 0.00 0.00 2.90
2156 2284 6.749118 GTGCTTAAAGGATCACTAATTTGCTG 59.251 38.462 0.00 0.00 0.00 4.41
2186 2314 8.028354 TGTGTCCTGTAAGCATTGAAAATATTG 58.972 33.333 0.00 0.00 0.00 1.90
2191 2319 4.887071 ACTGTGTCCTGTAAGCATTGAAAA 59.113 37.500 0.00 0.00 0.00 2.29
2270 2403 2.205074 CTAAGCTGAACTACCATGGCG 58.795 52.381 13.04 5.80 0.00 5.69
2388 2523 0.491823 AAGGGGGAAAAGGAAAGGGG 59.508 55.000 0.00 0.00 0.00 4.79
2399 2534 2.684943 GGTGGAAAAAGAAAGGGGGAA 58.315 47.619 0.00 0.00 0.00 3.97
2400 2535 1.132977 GGGTGGAAAAAGAAAGGGGGA 60.133 52.381 0.00 0.00 0.00 4.81
2415 2550 3.118149 TCTCAATCATGTCATGAGGGTGG 60.118 47.826 19.86 11.56 43.53 4.61
2483 2618 5.679792 GGTACTTGAAATTATTAAAGCGGCG 59.320 40.000 0.51 0.51 31.00 6.46
2569 2704 2.609491 CCAGCAGTGTTGAAGCGTAGTA 60.609 50.000 8.76 0.00 0.00 1.82
2571 2706 0.792640 CCAGCAGTGTTGAAGCGTAG 59.207 55.000 8.76 0.00 0.00 3.51
2574 2709 1.789078 AAGCCAGCAGTGTTGAAGCG 61.789 55.000 8.76 0.00 0.00 4.68
2577 2712 1.761449 TTGAAGCCAGCAGTGTTGAA 58.239 45.000 8.76 0.00 0.00 2.69
2594 2729 9.430838 GATATTGAGATCGATGTTTCTTGTTTG 57.569 33.333 0.54 0.00 0.00 2.93
2595 2730 9.166173 TGATATTGAGATCGATGTTTCTTGTTT 57.834 29.630 0.54 0.00 0.00 2.83
2598 2733 9.647679 CTTTGATATTGAGATCGATGTTTCTTG 57.352 33.333 0.54 0.00 0.00 3.02
2624 2759 4.098501 CAGGTGGAGGAAGAAATAAATGGC 59.901 45.833 0.00 0.00 0.00 4.40
2653 2788 3.567164 GCAAATGGATCCGTGATCTGAAT 59.433 43.478 7.39 0.00 38.91 2.57
2680 2815 5.693104 GTGACTGTGTGAGTAATTTTACGGA 59.307 40.000 0.00 0.00 38.65 4.69
2686 2821 5.064707 GTGTGTGTGACTGTGTGAGTAATTT 59.935 40.000 0.00 0.00 33.83 1.82
2725 2885 3.223674 TGACTGTGTGAGTAGGAGTGA 57.776 47.619 0.00 0.00 33.83 3.41
2797 2958 4.142160 GGATGGATGGAAACTGTAAAAGCC 60.142 45.833 0.00 0.00 0.00 4.35
2928 3089 0.840288 TAGGGGAGAAAGCAGGTGCA 60.840 55.000 4.48 0.00 45.16 4.57
2941 3102 1.615424 GGACTTGCAGGGTAGGGGA 60.615 63.158 0.00 0.00 0.00 4.81
2944 3105 0.036010 CACAGGACTTGCAGGGTAGG 60.036 60.000 0.00 0.00 0.00 3.18
2946 3107 0.396435 CACACAGGACTTGCAGGGTA 59.604 55.000 0.00 0.00 0.00 3.69
3016 3177 1.142870 TGAAAAGTGGAGGAGGTGGTG 59.857 52.381 0.00 0.00 0.00 4.17
3017 3178 1.143073 GTGAAAAGTGGAGGAGGTGGT 59.857 52.381 0.00 0.00 0.00 4.16
3018 3179 1.545651 GGTGAAAAGTGGAGGAGGTGG 60.546 57.143 0.00 0.00 0.00 4.61
3019 3180 1.878102 CGGTGAAAAGTGGAGGAGGTG 60.878 57.143 0.00 0.00 0.00 4.00
3023 3184 0.534203 GCACGGTGAAAAGTGGAGGA 60.534 55.000 13.29 0.00 38.68 3.71
3104 3266 4.384547 GTGAACATATTTGCGGTGAAAACC 59.615 41.667 0.00 0.00 0.00 3.27
3161 3323 0.027063 GACACACCGTCAAACCAACG 59.973 55.000 0.00 0.00 44.69 4.10
3162 3324 3.909957 GACACACCGTCAAACCAAC 57.090 52.632 0.00 0.00 44.69 3.77
3172 3334 1.395608 ACAAAAACGTCAGACACACCG 59.604 47.619 0.41 0.00 0.00 4.94
3173 3335 2.160813 ACACAAAAACGTCAGACACACC 59.839 45.455 0.41 0.00 0.00 4.16
3180 3342 2.908009 CACACACACACAAAAACGTCAG 59.092 45.455 0.00 0.00 0.00 3.51
3181 3343 2.290916 ACACACACACACAAAAACGTCA 59.709 40.909 0.00 0.00 0.00 4.35
3182 3344 2.654528 CACACACACACACAAAAACGTC 59.345 45.455 0.00 0.00 0.00 4.34
3183 3345 2.033550 ACACACACACACACAAAAACGT 59.966 40.909 0.00 0.00 0.00 3.99
3184 3346 2.403368 CACACACACACACACAAAAACG 59.597 45.455 0.00 0.00 0.00 3.60
3185 3347 3.181377 CACACACACACACACACAAAAAC 59.819 43.478 0.00 0.00 0.00 2.43
3186 3348 3.181486 ACACACACACACACACACAAAAA 60.181 39.130 0.00 0.00 0.00 1.94
3187 3349 2.359214 ACACACACACACACACACAAAA 59.641 40.909 0.00 0.00 0.00 2.44
3188 3350 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
3189 3351 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
3192 3354 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3193 3355 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3195 3357 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
3196 3358 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
3197 3359 0.179192 CTGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
3198 3360 1.304509 CCTGCACACACACACACACA 61.305 55.000 0.00 0.00 0.00 3.72
3201 3363 0.098728 GAACCTGCACACACACACAC 59.901 55.000 0.00 0.00 0.00 3.82
3523 3693 2.651232 GCGCGGTCGTAGCAGTAG 60.651 66.667 8.83 0.00 38.14 2.57
3580 3750 3.792053 GAGGTACATGGCCGCCTCG 62.792 68.421 11.61 3.95 38.22 4.63
3702 3885 2.202690 CCCGATTACACGAGCGCA 60.203 61.111 11.47 0.00 35.09 6.09
3704 3887 0.248907 ATGACCCGATTACACGAGCG 60.249 55.000 0.00 0.00 35.09 5.03
3735 3918 5.120053 TGAAGCTACAATCACGTTACACATG 59.880 40.000 0.00 0.00 0.00 3.21
3736 3919 5.234752 TGAAGCTACAATCACGTTACACAT 58.765 37.500 0.00 0.00 0.00 3.21
3738 3921 5.498700 CGATGAAGCTACAATCACGTTACAC 60.499 44.000 0.00 0.00 0.00 2.90
3739 3922 4.561213 CGATGAAGCTACAATCACGTTACA 59.439 41.667 0.00 0.00 0.00 2.41
3740 3923 4.561606 ACGATGAAGCTACAATCACGTTAC 59.438 41.667 0.00 0.00 33.08 2.50
3741 3924 4.740268 ACGATGAAGCTACAATCACGTTA 58.260 39.130 0.00 0.00 33.08 3.18
3742 3925 3.585862 ACGATGAAGCTACAATCACGTT 58.414 40.909 0.00 0.00 33.08 3.99
3743 3926 3.232213 ACGATGAAGCTACAATCACGT 57.768 42.857 0.00 0.00 32.53 4.49
3744 3927 3.782250 GCAACGATGAAGCTACAATCACG 60.782 47.826 0.00 0.00 0.00 4.35
3745 3928 3.674423 GCAACGATGAAGCTACAATCAC 58.326 45.455 0.00 0.00 0.00 3.06
3746 3929 2.348362 CGCAACGATGAAGCTACAATCA 59.652 45.455 0.00 0.00 0.00 2.57
3747 3930 2.348666 ACGCAACGATGAAGCTACAATC 59.651 45.455 0.00 0.00 0.00 2.67
3748 3931 2.346803 ACGCAACGATGAAGCTACAAT 58.653 42.857 0.00 0.00 0.00 2.71
3793 3976 3.814842 ACGAAATGCTGAACAGATCAACA 59.185 39.130 5.97 0.00 38.44 3.33
3799 3982 4.200838 TGGATACGAAATGCTGAACAGA 57.799 40.909 5.97 0.00 42.51 3.41
3801 3984 3.876914 GGATGGATACGAAATGCTGAACA 59.123 43.478 0.00 0.00 42.51 3.18
3858 4041 3.958798 CCTCCAAATTCTCGTCCTAGGTA 59.041 47.826 9.08 0.00 0.00 3.08
3922 4136 2.246761 TATTCGGTGGCCTTCCGTGG 62.247 60.000 28.83 10.71 46.86 4.94
3928 4146 0.916086 TGGTCATATTCGGTGGCCTT 59.084 50.000 3.32 0.00 41.89 4.35
3929 4147 0.916086 TTGGTCATATTCGGTGGCCT 59.084 50.000 3.32 0.00 41.89 5.19
3936 4154 2.285602 CGCCTTCGTTTGGTCATATTCG 60.286 50.000 0.00 0.00 0.00 3.34
3962 4180 4.021807 TGTTTGTCCGTCTGATGTTAGCTA 60.022 41.667 0.00 0.00 0.00 3.32
3963 4181 3.244078 TGTTTGTCCGTCTGATGTTAGCT 60.244 43.478 0.00 0.00 0.00 3.32
3964 4182 3.064207 TGTTTGTCCGTCTGATGTTAGC 58.936 45.455 0.00 0.00 0.00 3.09
3965 4183 4.988540 TCTTGTTTGTCCGTCTGATGTTAG 59.011 41.667 0.00 0.00 0.00 2.34
4005 4271 5.163703 CGCTGACTAGTCTGTGAGTCTTAAT 60.164 44.000 29.33 0.00 42.21 1.40
4008 4274 2.486203 CGCTGACTAGTCTGTGAGTCTT 59.514 50.000 29.33 0.00 42.21 3.01
4012 4278 0.453793 CCCGCTGACTAGTCTGTGAG 59.546 60.000 32.73 22.32 40.15 3.51
4026 4292 1.966762 CTGAAAATGTTGCCCCGCT 59.033 52.632 0.00 0.00 0.00 5.52
4028 4294 0.318120 AAGCTGAAAATGTTGCCCCG 59.682 50.000 0.00 0.00 0.00 5.73
4029 4295 1.070601 ACAAGCTGAAAATGTTGCCCC 59.929 47.619 0.00 0.00 0.00 5.80
4030 4296 2.224018 TGACAAGCTGAAAATGTTGCCC 60.224 45.455 0.00 0.00 0.00 5.36
4033 4299 4.046462 CCTGTGACAAGCTGAAAATGTTG 58.954 43.478 0.00 0.00 0.00 3.33
4056 4380 3.849911 TCGATTCTTCTCGAGTTGCAAT 58.150 40.909 13.13 6.82 42.38 3.56
4076 4400 3.796717 TCGTCTCATGTGCATATTTCGTC 59.203 43.478 0.00 0.00 0.00 4.20
4093 4417 2.159014 TGCTGGTGTTACTTGTTCGTCT 60.159 45.455 0.00 0.00 0.00 4.18
4116 4440 4.074970 CTGGTGCCTGTTCTGTTCTTATT 58.925 43.478 0.00 0.00 0.00 1.40
4131 4455 3.505680 TGTTCAACATGTTATCTGGTGCC 59.494 43.478 11.53 0.00 31.22 5.01
4137 4461 6.543831 GGGCTAAGATGTTCAACATGTTATCT 59.456 38.462 17.90 12.74 41.51 1.98
4189 4513 7.042456 ACTGTATCATGCTGCTTTAACTTATCG 60.042 37.037 0.00 0.00 0.00 2.92
4253 4581 7.533222 CGAGTTGTCTTGAGAATGAATGAAAAG 59.467 37.037 0.00 0.00 0.00 2.27
4357 4685 6.274157 ACATAGAGAACAGAAACGTGAGAT 57.726 37.500 0.00 0.00 0.00 2.75
4363 4691 8.838365 AGGTATAGTACATAGAGAACAGAAACG 58.162 37.037 0.00 0.00 0.00 3.60
4391 4719 3.798202 AGTGCCGCTAAATAGAAGGAAG 58.202 45.455 6.59 0.00 0.00 3.46
4392 4720 3.906720 AGTGCCGCTAAATAGAAGGAA 57.093 42.857 6.59 0.00 0.00 3.36
4393 4721 3.531538 CAAGTGCCGCTAAATAGAAGGA 58.468 45.455 6.59 0.00 0.00 3.36
4444 4772 3.562635 GCAGCAGAACGGTGGTAC 58.437 61.111 0.00 0.00 43.61 3.34
4471 4799 2.559440 CAATGGGAGCTCTAGTTCTGC 58.441 52.381 14.64 0.00 0.00 4.26
4525 4853 2.551459 CAAGGAGCTCAGGAACAACAAG 59.449 50.000 17.19 0.00 0.00 3.16
4543 4871 1.542492 AATGGCAGTGCTTCTCCAAG 58.458 50.000 16.11 0.00 31.12 3.61
4557 4885 1.458639 GCATGGAGGTGGCTAATGGC 61.459 60.000 0.00 0.00 40.90 4.40
4620 4948 2.224606 CATGCTCATGCGGAACCTAAT 58.775 47.619 0.00 0.00 43.34 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.