Multiple sequence alignment - TraesCS4A01G072300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G072300 chr4A 100.000 5544 0 0 1 5544 70307388 70312931 0.000000e+00 10238.0
1 TraesCS4A01G072300 chr4D 93.201 3236 126 41 300 3520 388924305 388927461 0.000000e+00 4671.0
2 TraesCS4A01G072300 chr4D 92.868 1374 66 15 4193 5544 388928141 388929504 0.000000e+00 1965.0
3 TraesCS4A01G072300 chr4D 92.487 599 34 3 3535 4128 388927520 388928112 0.000000e+00 846.0
4 TraesCS4A01G072300 chr4B 90.411 3650 185 71 245 3816 477222829 477226391 0.000000e+00 4649.0
5 TraesCS4A01G072300 chr4B 93.236 887 38 8 4679 5544 477227229 477228114 0.000000e+00 1286.0
6 TraesCS4A01G072300 chr4B 93.869 473 22 7 4193 4663 477226697 477227164 0.000000e+00 706.0
7 TraesCS4A01G072300 chr4B 92.708 288 16 5 3837 4122 477226379 477226663 1.440000e-110 411.0
8 TraesCS4A01G072300 chr4B 87.747 253 24 3 5 250 477206686 477206938 7.030000e-74 289.0
9 TraesCS4A01G072300 chr5D 90.909 88 6 2 2642 2728 404739808 404739722 3.510000e-22 117.0
10 TraesCS4A01G072300 chr5D 89.773 88 7 2 2642 2728 482310519 482310605 1.630000e-20 111.0
11 TraesCS4A01G072300 chr5D 86.364 88 10 2 2642 2728 482312948 482312862 1.640000e-15 95.3
12 TraesCS4A01G072300 chr5D 90.741 54 2 3 3650 3701 382488294 382488242 9.970000e-08 69.4
13 TraesCS4A01G072300 chr1D 89.773 88 7 2 2642 2728 52103908 52103822 1.630000e-20 111.0
14 TraesCS4A01G072300 chr2D 89.773 88 6 3 2642 2728 248754492 248754407 5.870000e-20 110.0
15 TraesCS4A01G072300 chr3D 87.500 88 9 2 2642 2728 424686061 424686147 3.530000e-17 100.0
16 TraesCS4A01G072300 chr5B 84.524 84 12 1 2642 2725 533893799 533893717 1.280000e-11 82.4
17 TraesCS4A01G072300 chr5B 90.741 54 2 3 3650 3701 458897049 458896997 9.970000e-08 69.4
18 TraesCS4A01G072300 chr5A 90.741 54 2 3 3650 3701 482902499 482902447 9.970000e-08 69.4
19 TraesCS4A01G072300 chr5A 100.000 29 0 0 3278 3306 617238311 617238283 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G072300 chr4A 70307388 70312931 5543 False 10238 10238 100.000 1 5544 1 chr4A.!!$F1 5543
1 TraesCS4A01G072300 chr4D 388924305 388929504 5199 False 2494 4671 92.852 300 5544 3 chr4D.!!$F1 5244
2 TraesCS4A01G072300 chr4B 477222829 477228114 5285 False 1763 4649 92.556 245 5544 4 chr4B.!!$F2 5299

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.108756 GGACAGTCCTACCGAAGCAC 60.109 60.0 12.94 0.00 32.53 4.40 F
87 88 0.108756 GACAGTCCTACCGAAGCACC 60.109 60.0 0.00 0.00 0.00 5.01 F
278 279 0.179000 GCCATGTGGATTCGGAGACT 59.821 55.0 2.55 0.00 33.76 3.24 F
2011 2061 0.102120 CGATGCTCACCTCTCACCTC 59.898 60.0 0.00 0.00 0.00 3.85 F
3106 3156 0.103572 ACACCACGACAAACTACGCT 59.896 50.0 0.00 0.00 0.00 5.07 F
3545 3649 0.237761 ACACGGACGAGTCTCTTTCG 59.762 55.0 5.52 5.52 43.38 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2039 0.102120 GAGGTGAGAGGTGAGCATCG 59.898 60.000 0.00 0.00 38.61 3.84 R
2010 2060 0.963856 CAAGATTGCTGCTGCTGGGA 60.964 55.000 17.00 0.99 40.48 4.37 R
2013 2063 1.153823 GCCAAGATTGCTGCTGCTG 60.154 57.895 17.00 6.00 40.48 4.41 R
3521 3581 0.110147 GAGACTCGTCCGTGTCTGTG 60.110 60.000 23.93 0.00 45.34 3.66 R
4188 4303 0.386352 CTGCAACACACAGCAATCGG 60.386 55.000 0.00 0.00 40.73 4.18 R
5431 5623 0.031178 CAGAGTTTGCCTGTGTTGCC 59.969 55.000 0.00 0.00 29.96 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.953669 CAAGCATTGGCATCTTCGC 58.046 52.632 0.00 0.00 43.94 4.70
24 25 0.171679 CAAGCATTGGCATCTTCGCA 59.828 50.000 0.00 0.00 43.94 5.10
25 26 0.889994 AAGCATTGGCATCTTCGCAA 59.110 45.000 0.00 0.00 44.61 4.85
26 27 0.171903 AGCATTGGCATCTTCGCAAC 59.828 50.000 0.00 0.00 44.61 4.17
27 28 1.135699 GCATTGGCATCTTCGCAACG 61.136 55.000 0.00 0.00 40.72 4.10
28 29 0.447406 CATTGGCATCTTCGCAACGA 59.553 50.000 0.00 0.00 0.00 3.85
29 30 0.729116 ATTGGCATCTTCGCAACGAG 59.271 50.000 0.00 0.00 37.14 4.18
30 31 1.298157 TTGGCATCTTCGCAACGAGG 61.298 55.000 0.00 0.00 37.14 4.63
31 32 2.401195 GCATCTTCGCAACGAGGC 59.599 61.111 0.00 0.00 37.14 4.70
32 33 3.093278 CATCTTCGCAACGAGGCC 58.907 61.111 0.00 0.00 37.14 5.19
33 34 1.741401 CATCTTCGCAACGAGGCCA 60.741 57.895 5.01 0.00 37.14 5.36
34 35 1.741770 ATCTTCGCAACGAGGCCAC 60.742 57.895 5.01 0.00 37.14 5.01
35 36 2.449031 ATCTTCGCAACGAGGCCACA 62.449 55.000 5.01 0.00 37.14 4.17
36 37 2.664851 TTCGCAACGAGGCCACAG 60.665 61.111 5.01 0.00 37.14 3.66
37 38 3.158537 TTCGCAACGAGGCCACAGA 62.159 57.895 5.01 0.00 37.14 3.41
38 39 3.414700 CGCAACGAGGCCACAGAC 61.415 66.667 5.01 0.00 0.00 3.51
39 40 3.050275 GCAACGAGGCCACAGACC 61.050 66.667 5.01 0.00 0.00 3.85
40 41 2.425592 CAACGAGGCCACAGACCA 59.574 61.111 5.01 0.00 0.00 4.02
41 42 1.669115 CAACGAGGCCACAGACCAG 60.669 63.158 5.01 0.00 0.00 4.00
42 43 2.140792 AACGAGGCCACAGACCAGT 61.141 57.895 5.01 0.00 0.00 4.00
43 44 0.830444 AACGAGGCCACAGACCAGTA 60.830 55.000 5.01 0.00 0.00 2.74
44 45 0.830444 ACGAGGCCACAGACCAGTAA 60.830 55.000 5.01 0.00 0.00 2.24
45 46 0.389948 CGAGGCCACAGACCAGTAAC 60.390 60.000 5.01 0.00 0.00 2.50
46 47 0.977395 GAGGCCACAGACCAGTAACT 59.023 55.000 5.01 0.00 0.00 2.24
47 48 2.176889 GAGGCCACAGACCAGTAACTA 58.823 52.381 5.01 0.00 0.00 2.24
48 49 2.766828 GAGGCCACAGACCAGTAACTAT 59.233 50.000 5.01 0.00 0.00 2.12
49 50 3.182152 AGGCCACAGACCAGTAACTATT 58.818 45.455 5.01 0.00 0.00 1.73
50 51 3.587506 AGGCCACAGACCAGTAACTATTT 59.412 43.478 5.01 0.00 0.00 1.40
51 52 4.781087 AGGCCACAGACCAGTAACTATTTA 59.219 41.667 5.01 0.00 0.00 1.40
52 53 4.874396 GGCCACAGACCAGTAACTATTTAC 59.126 45.833 0.00 0.00 38.34 2.01
54 55 6.127253 GGCCACAGACCAGTAACTATTTACTA 60.127 42.308 0.00 0.00 45.23 1.82
55 56 6.755607 GCCACAGACCAGTAACTATTTACTAC 59.244 42.308 5.28 1.95 45.23 2.73
56 57 7.363617 GCCACAGACCAGTAACTATTTACTACT 60.364 40.741 5.28 3.84 45.23 2.57
57 58 9.182214 CCACAGACCAGTAACTATTTACTACTA 57.818 37.037 5.28 0.00 45.23 1.82
59 60 8.901793 ACAGACCAGTAACTATTTACTACTAGC 58.098 37.037 5.28 0.00 45.23 3.42
60 61 8.900781 CAGACCAGTAACTATTTACTACTAGCA 58.099 37.037 5.28 0.00 45.23 3.49
61 62 9.122779 AGACCAGTAACTATTTACTACTAGCAG 57.877 37.037 5.28 0.00 45.23 4.24
62 63 8.820153 ACCAGTAACTATTTACTACTAGCAGT 57.180 34.615 5.28 0.31 45.23 4.40
63 64 9.911788 ACCAGTAACTATTTACTACTAGCAGTA 57.088 33.333 5.28 0.00 45.23 2.74
75 76 3.888583 ACTAGCAGTAGTAGGACAGTCC 58.111 50.000 12.25 12.25 37.76 3.85
85 86 2.273908 GGACAGTCCTACCGAAGCA 58.726 57.895 12.94 0.00 32.53 3.91
86 87 0.108756 GGACAGTCCTACCGAAGCAC 60.109 60.000 12.94 0.00 32.53 4.40
87 88 0.108756 GACAGTCCTACCGAAGCACC 60.109 60.000 0.00 0.00 0.00 5.01
88 89 1.218316 CAGTCCTACCGAAGCACCC 59.782 63.158 0.00 0.00 0.00 4.61
89 90 1.988406 AGTCCTACCGAAGCACCCC 60.988 63.158 0.00 0.00 0.00 4.95
90 91 3.072468 TCCTACCGAAGCACCCCG 61.072 66.667 0.00 0.00 0.00 5.73
91 92 3.387947 CCTACCGAAGCACCCCGT 61.388 66.667 0.00 0.00 0.00 5.28
92 93 2.660802 CTACCGAAGCACCCCGTT 59.339 61.111 0.00 0.00 0.00 4.44
93 94 1.004200 CTACCGAAGCACCCCGTTT 60.004 57.895 0.00 0.00 0.00 3.60
94 95 0.604511 CTACCGAAGCACCCCGTTTT 60.605 55.000 0.00 0.00 0.00 2.43
95 96 0.683973 TACCGAAGCACCCCGTTTTA 59.316 50.000 0.00 0.00 0.00 1.52
96 97 0.886043 ACCGAAGCACCCCGTTTTAC 60.886 55.000 0.00 0.00 0.00 2.01
97 98 0.885596 CCGAAGCACCCCGTTTTACA 60.886 55.000 0.00 0.00 0.00 2.41
98 99 0.945813 CGAAGCACCCCGTTTTACAA 59.054 50.000 0.00 0.00 0.00 2.41
99 100 1.334243 CGAAGCACCCCGTTTTACAAA 59.666 47.619 0.00 0.00 0.00 2.83
100 101 2.030628 CGAAGCACCCCGTTTTACAAAT 60.031 45.455 0.00 0.00 0.00 2.32
101 102 3.551250 CGAAGCACCCCGTTTTACAAATT 60.551 43.478 0.00 0.00 0.00 1.82
102 103 4.373527 GAAGCACCCCGTTTTACAAATTT 58.626 39.130 0.00 0.00 0.00 1.82
103 104 3.723260 AGCACCCCGTTTTACAAATTTG 58.277 40.909 16.67 16.67 0.00 2.32
104 105 2.803386 GCACCCCGTTTTACAAATTTGG 59.197 45.455 21.74 3.68 0.00 3.28
105 106 3.741700 GCACCCCGTTTTACAAATTTGGT 60.742 43.478 21.74 10.18 0.00 3.67
106 107 4.443621 CACCCCGTTTTACAAATTTGGTT 58.556 39.130 21.74 4.90 0.00 3.67
107 108 4.271291 CACCCCGTTTTACAAATTTGGTTG 59.729 41.667 21.74 5.79 34.52 3.77
108 109 3.248841 CCCCGTTTTACAAATTTGGTTGC 59.751 43.478 21.74 7.38 31.29 4.17
109 110 3.248841 CCCGTTTTACAAATTTGGTTGCC 59.751 43.478 21.74 6.30 31.29 4.52
110 111 3.871594 CCGTTTTACAAATTTGGTTGCCA 59.128 39.130 21.74 0.00 31.29 4.92
111 112 4.513318 CCGTTTTACAAATTTGGTTGCCAT 59.487 37.500 21.74 2.02 31.53 4.40
112 113 5.438972 CGTTTTACAAATTTGGTTGCCATG 58.561 37.500 21.74 3.29 31.53 3.66
113 114 5.211454 GTTTTACAAATTTGGTTGCCATGC 58.789 37.500 21.74 0.46 31.53 4.06
114 115 1.510776 ACAAATTTGGTTGCCATGCG 58.489 45.000 21.74 0.00 31.53 4.73
115 116 1.202627 ACAAATTTGGTTGCCATGCGT 60.203 42.857 21.74 0.00 31.53 5.24
116 117 1.194997 CAAATTTGGTTGCCATGCGTG 59.805 47.619 10.49 0.00 31.53 5.34
117 118 0.950071 AATTTGGTTGCCATGCGTGC 60.950 50.000 0.00 0.00 31.53 5.34
118 119 3.837908 TTTGGTTGCCATGCGTGCG 62.838 57.895 0.00 0.00 31.53 5.34
121 122 4.036804 GTTGCCATGCGTGCGGAA 62.037 61.111 0.00 0.00 0.00 4.30
122 123 3.290608 TTGCCATGCGTGCGGAAA 61.291 55.556 0.00 0.00 0.00 3.13
123 124 3.266230 TTGCCATGCGTGCGGAAAG 62.266 57.895 0.00 0.00 0.00 2.62
124 125 3.430862 GCCATGCGTGCGGAAAGA 61.431 61.111 0.00 0.00 0.00 2.52
125 126 2.764314 GCCATGCGTGCGGAAAGAT 61.764 57.895 0.00 0.00 0.00 2.40
126 127 1.063006 CCATGCGTGCGGAAAGATG 59.937 57.895 0.00 0.00 0.00 2.90
127 128 1.368345 CCATGCGTGCGGAAAGATGA 61.368 55.000 0.00 0.00 0.00 2.92
128 129 0.447406 CATGCGTGCGGAAAGATGAA 59.553 50.000 0.00 0.00 0.00 2.57
129 130 0.447801 ATGCGTGCGGAAAGATGAAC 59.552 50.000 0.00 0.00 0.00 3.18
130 131 1.134694 GCGTGCGGAAAGATGAACC 59.865 57.895 0.00 0.00 0.00 3.62
131 132 1.573829 GCGTGCGGAAAGATGAACCA 61.574 55.000 0.00 0.00 0.00 3.67
132 133 1.086696 CGTGCGGAAAGATGAACCAT 58.913 50.000 0.00 0.00 0.00 3.55
133 134 1.202065 CGTGCGGAAAGATGAACCATG 60.202 52.381 0.00 0.00 0.00 3.66
134 135 1.812571 GTGCGGAAAGATGAACCATGT 59.187 47.619 0.00 0.00 0.00 3.21
135 136 1.811965 TGCGGAAAGATGAACCATGTG 59.188 47.619 0.00 0.00 0.00 3.21
136 137 1.468054 GCGGAAAGATGAACCATGTGC 60.468 52.381 0.00 0.00 0.00 4.57
137 138 1.133025 CGGAAAGATGAACCATGTGCC 59.867 52.381 0.00 0.00 0.00 5.01
138 139 1.133025 GGAAAGATGAACCATGTGCCG 59.867 52.381 0.00 0.00 0.00 5.69
139 140 2.083774 GAAAGATGAACCATGTGCCGA 58.916 47.619 0.00 0.00 0.00 5.54
140 141 2.198827 AAGATGAACCATGTGCCGAA 57.801 45.000 0.00 0.00 0.00 4.30
141 142 2.425143 AGATGAACCATGTGCCGAAT 57.575 45.000 0.00 0.00 0.00 3.34
142 143 2.019249 AGATGAACCATGTGCCGAATG 58.981 47.619 0.00 0.00 0.00 2.67
143 144 0.457035 ATGAACCATGTGCCGAATGC 59.543 50.000 0.00 0.00 41.77 3.56
144 145 1.226379 GAACCATGTGCCGAATGCG 60.226 57.895 0.00 0.00 45.60 4.73
145 146 1.643868 GAACCATGTGCCGAATGCGA 61.644 55.000 0.00 0.00 45.60 5.10
146 147 1.031571 AACCATGTGCCGAATGCGAT 61.032 50.000 0.00 0.00 45.60 4.58
147 148 1.031571 ACCATGTGCCGAATGCGATT 61.032 50.000 0.00 0.00 45.60 3.34
148 149 0.317269 CCATGTGCCGAATGCGATTC 60.317 55.000 0.00 0.00 45.60 2.52
149 150 0.377905 CATGTGCCGAATGCGATTCA 59.622 50.000 0.00 0.00 45.60 2.57
150 151 0.659427 ATGTGCCGAATGCGATTCAG 59.341 50.000 0.00 0.65 45.60 3.02
151 152 0.390998 TGTGCCGAATGCGATTCAGA 60.391 50.000 0.00 0.00 45.60 3.27
152 153 0.940126 GTGCCGAATGCGATTCAGAT 59.060 50.000 0.00 0.00 45.60 2.90
153 154 0.939419 TGCCGAATGCGATTCAGATG 59.061 50.000 0.00 0.00 45.60 2.90
154 155 0.940126 GCCGAATGCGATTCAGATGT 59.060 50.000 0.00 0.00 39.22 3.06
155 156 1.331756 GCCGAATGCGATTCAGATGTT 59.668 47.619 0.00 0.00 39.22 2.71
156 157 2.543848 GCCGAATGCGATTCAGATGTTA 59.456 45.455 0.00 0.00 39.22 2.41
157 158 3.604772 GCCGAATGCGATTCAGATGTTAC 60.605 47.826 0.00 0.00 39.22 2.50
158 159 3.555547 CCGAATGCGATTCAGATGTTACA 59.444 43.478 0.00 0.00 39.22 2.41
159 160 4.318333 CCGAATGCGATTCAGATGTTACAG 60.318 45.833 0.00 0.00 39.22 2.74
160 161 4.268644 CGAATGCGATTCAGATGTTACAGT 59.731 41.667 0.00 0.00 39.22 3.55
161 162 5.555256 CGAATGCGATTCAGATGTTACAGTC 60.555 44.000 0.00 0.00 39.22 3.51
162 163 4.456280 TGCGATTCAGATGTTACAGTCT 57.544 40.909 0.00 0.00 0.00 3.24
163 164 5.576447 TGCGATTCAGATGTTACAGTCTA 57.424 39.130 0.00 0.00 0.00 2.59
164 165 5.961272 TGCGATTCAGATGTTACAGTCTAA 58.039 37.500 0.00 0.00 0.00 2.10
165 166 6.573434 TGCGATTCAGATGTTACAGTCTAAT 58.427 36.000 0.00 0.00 0.00 1.73
166 167 7.712797 TGCGATTCAGATGTTACAGTCTAATA 58.287 34.615 0.00 0.00 0.00 0.98
167 168 8.194769 TGCGATTCAGATGTTACAGTCTAATAA 58.805 33.333 0.00 0.00 0.00 1.40
168 169 9.197694 GCGATTCAGATGTTACAGTCTAATAAT 57.802 33.333 0.00 0.00 0.00 1.28
172 173 8.547481 TCAGATGTTACAGTCTAATAATCCCA 57.453 34.615 0.00 0.00 0.00 4.37
173 174 8.988060 TCAGATGTTACAGTCTAATAATCCCAA 58.012 33.333 0.00 0.00 0.00 4.12
174 175 9.265901 CAGATGTTACAGTCTAATAATCCCAAG 57.734 37.037 0.00 0.00 0.00 3.61
175 176 9.213777 AGATGTTACAGTCTAATAATCCCAAGA 57.786 33.333 0.00 0.00 0.00 3.02
176 177 9.832445 GATGTTACAGTCTAATAATCCCAAGAA 57.168 33.333 0.00 0.00 0.00 2.52
180 181 7.573968 ACAGTCTAATAATCCCAAGAAATGC 57.426 36.000 0.00 0.00 0.00 3.56
181 182 7.349598 ACAGTCTAATAATCCCAAGAAATGCT 58.650 34.615 0.00 0.00 0.00 3.79
182 183 8.494433 ACAGTCTAATAATCCCAAGAAATGCTA 58.506 33.333 0.00 0.00 0.00 3.49
183 184 8.778358 CAGTCTAATAATCCCAAGAAATGCTAC 58.222 37.037 0.00 0.00 0.00 3.58
184 185 7.657761 AGTCTAATAATCCCAAGAAATGCTACG 59.342 37.037 0.00 0.00 0.00 3.51
185 186 7.656137 GTCTAATAATCCCAAGAAATGCTACGA 59.344 37.037 0.00 0.00 0.00 3.43
186 187 6.619801 AATAATCCCAAGAAATGCTACGAC 57.380 37.500 0.00 0.00 0.00 4.34
187 188 3.914426 ATCCCAAGAAATGCTACGACT 57.086 42.857 0.00 0.00 0.00 4.18
188 189 5.353394 AATCCCAAGAAATGCTACGACTA 57.647 39.130 0.00 0.00 0.00 2.59
189 190 4.386867 TCCCAAGAAATGCTACGACTAG 57.613 45.455 0.00 0.00 0.00 2.57
190 191 3.767673 TCCCAAGAAATGCTACGACTAGT 59.232 43.478 0.00 0.00 0.00 2.57
191 192 4.222145 TCCCAAGAAATGCTACGACTAGTT 59.778 41.667 0.00 0.00 0.00 2.24
192 193 5.419788 TCCCAAGAAATGCTACGACTAGTTA 59.580 40.000 0.00 0.00 0.00 2.24
193 194 5.749109 CCCAAGAAATGCTACGACTAGTTAG 59.251 44.000 0.00 0.00 0.00 2.34
194 195 6.331061 CCAAGAAATGCTACGACTAGTTAGT 58.669 40.000 0.00 3.42 39.71 2.24
195 196 6.812160 CCAAGAAATGCTACGACTAGTTAGTT 59.188 38.462 9.69 0.00 36.50 2.24
196 197 7.972277 CCAAGAAATGCTACGACTAGTTAGTTA 59.028 37.037 9.69 0.00 36.50 2.24
197 198 9.011407 CAAGAAATGCTACGACTAGTTAGTTAG 57.989 37.037 9.69 4.14 36.50 2.34
198 199 8.503458 AGAAATGCTACGACTAGTTAGTTAGA 57.497 34.615 9.69 0.00 36.50 2.10
199 200 9.122779 AGAAATGCTACGACTAGTTAGTTAGAT 57.877 33.333 9.69 0.00 36.50 1.98
200 201 9.171701 GAAATGCTACGACTAGTTAGTTAGATG 57.828 37.037 9.69 0.18 36.50 2.90
201 202 6.057627 TGCTACGACTAGTTAGTTAGATGC 57.942 41.667 9.69 7.97 36.50 3.91
202 203 5.008415 TGCTACGACTAGTTAGTTAGATGCC 59.992 44.000 9.69 0.00 36.50 4.40
203 204 5.239087 GCTACGACTAGTTAGTTAGATGCCT 59.761 44.000 9.69 0.00 36.50 4.75
204 205 6.238703 GCTACGACTAGTTAGTTAGATGCCTT 60.239 42.308 9.69 0.00 36.50 4.35
205 206 6.527057 ACGACTAGTTAGTTAGATGCCTTT 57.473 37.500 0.00 0.00 36.50 3.11
206 207 6.932947 ACGACTAGTTAGTTAGATGCCTTTT 58.067 36.000 0.00 0.00 36.50 2.27
207 208 7.384477 ACGACTAGTTAGTTAGATGCCTTTTT 58.616 34.615 0.00 0.00 36.50 1.94
208 209 7.544915 ACGACTAGTTAGTTAGATGCCTTTTTC 59.455 37.037 0.00 0.00 36.50 2.29
209 210 7.760340 CGACTAGTTAGTTAGATGCCTTTTTCT 59.240 37.037 0.00 0.00 36.50 2.52
210 211 9.438228 GACTAGTTAGTTAGATGCCTTTTTCTT 57.562 33.333 0.00 0.00 36.50 2.52
211 212 9.794719 ACTAGTTAGTTAGATGCCTTTTTCTTT 57.205 29.630 0.00 0.00 31.13 2.52
213 214 8.112016 AGTTAGTTAGATGCCTTTTTCTTTCC 57.888 34.615 0.00 0.00 0.00 3.13
214 215 5.629079 AGTTAGATGCCTTTTTCTTTCCG 57.371 39.130 0.00 0.00 0.00 4.30
215 216 5.313712 AGTTAGATGCCTTTTTCTTTCCGA 58.686 37.500 0.00 0.00 0.00 4.55
216 217 5.768164 AGTTAGATGCCTTTTTCTTTCCGAA 59.232 36.000 0.00 0.00 0.00 4.30
217 218 6.264518 AGTTAGATGCCTTTTTCTTTCCGAAA 59.735 34.615 0.00 0.00 39.76 3.46
218 219 5.126396 AGATGCCTTTTTCTTTCCGAAAG 57.874 39.130 13.83 13.83 42.22 2.62
219 220 4.827284 AGATGCCTTTTTCTTTCCGAAAGA 59.173 37.500 17.88 17.88 45.30 2.52
228 229 4.675976 TCTTTCCGAAAGAGTACAACCA 57.324 40.909 17.88 0.00 42.31 3.67
229 230 5.223449 TCTTTCCGAAAGAGTACAACCAT 57.777 39.130 17.88 0.00 42.31 3.55
230 231 4.994852 TCTTTCCGAAAGAGTACAACCATG 59.005 41.667 17.88 0.00 42.31 3.66
231 232 4.345859 TTCCGAAAGAGTACAACCATGT 57.654 40.909 0.00 0.00 43.74 3.21
232 233 3.921677 TCCGAAAGAGTACAACCATGTC 58.078 45.455 0.00 0.00 41.05 3.06
233 234 3.000727 CCGAAAGAGTACAACCATGTCC 58.999 50.000 0.00 0.00 41.05 4.02
234 235 3.000727 CGAAAGAGTACAACCATGTCCC 58.999 50.000 0.00 0.00 41.05 4.46
235 236 3.306780 CGAAAGAGTACAACCATGTCCCT 60.307 47.826 0.00 0.00 41.05 4.20
236 237 4.652822 GAAAGAGTACAACCATGTCCCTT 58.347 43.478 0.00 0.00 41.05 3.95
237 238 4.724279 AAGAGTACAACCATGTCCCTTT 57.276 40.909 0.00 0.00 41.05 3.11
238 239 4.724279 AGAGTACAACCATGTCCCTTTT 57.276 40.909 0.00 0.00 41.05 2.27
239 240 4.652822 AGAGTACAACCATGTCCCTTTTC 58.347 43.478 0.00 0.00 41.05 2.29
240 241 3.756963 GAGTACAACCATGTCCCTTTTCC 59.243 47.826 0.00 0.00 41.05 3.13
241 242 2.009681 ACAACCATGTCCCTTTTCCC 57.990 50.000 0.00 0.00 33.41 3.97
242 243 1.266178 CAACCATGTCCCTTTTCCCC 58.734 55.000 0.00 0.00 0.00 4.81
243 244 0.863956 AACCATGTCCCTTTTCCCCA 59.136 50.000 0.00 0.00 0.00 4.96
250 251 3.506398 TGTCCCTTTTCCCCATCTTTTC 58.494 45.455 0.00 0.00 0.00 2.29
252 253 2.187958 CCCTTTTCCCCATCTTTTCCC 58.812 52.381 0.00 0.00 0.00 3.97
274 275 1.134521 GTGTAGCCATGTGGATTCGGA 60.135 52.381 2.55 0.00 37.39 4.55
278 279 0.179000 GCCATGTGGATTCGGAGACT 59.821 55.000 2.55 0.00 33.76 3.24
323 324 3.244181 CCCATTTTCCTTCCCAGTTTGTG 60.244 47.826 0.00 0.00 0.00 3.33
324 325 3.387699 CCATTTTCCTTCCCAGTTTGTGT 59.612 43.478 0.00 0.00 0.00 3.72
325 326 4.586841 CCATTTTCCTTCCCAGTTTGTGTA 59.413 41.667 0.00 0.00 0.00 2.90
343 344 6.795098 TGTGTAGTACAAATCATCACCAAC 57.205 37.500 4.11 0.00 36.06 3.77
394 395 6.535963 ACCATCTTCCATCATTTTTCCTTC 57.464 37.500 0.00 0.00 0.00 3.46
422 423 0.827368 AATCTCCTCCACCGAGAAGC 59.173 55.000 0.00 0.00 39.72 3.86
426 427 2.726351 CCTCCACCGAGAAGCTCCC 61.726 68.421 0.00 0.00 38.52 4.30
454 455 2.202623 CCTCGCCTTTCTCCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
476 477 2.014335 TCATCACAGATCCTGTTGCG 57.986 50.000 0.00 0.00 42.59 4.85
481 494 1.230635 ACAGATCCTGTTGCGCACAC 61.231 55.000 11.12 12.73 42.59 3.82
490 503 1.262950 TGTTGCGCACACACAATACTC 59.737 47.619 11.12 0.00 0.00 2.59
559 574 0.251386 TCACCTCCACTTCGCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
564 579 0.388649 TCCACTTCGCTCTCTTTCGC 60.389 55.000 0.00 0.00 0.00 4.70
652 667 1.174712 GGCAGAAAAGACAGCAGCCA 61.175 55.000 0.00 0.00 40.29 4.75
722 737 3.361977 CGTTCAACCCAAGCCCCG 61.362 66.667 0.00 0.00 0.00 5.73
884 901 9.062524 TGAAGGGTGAAATTTTATATACCATCG 57.937 33.333 0.00 0.00 0.00 3.84
887 904 6.349860 GGGTGAAATTTTATATACCATCGCCC 60.350 42.308 5.42 5.42 45.82 6.13
992 1009 2.892425 CACATCTTCCGCCCGCTC 60.892 66.667 0.00 0.00 0.00 5.03
1028 1045 1.134371 GGATATATCTGCCGCTTCCCC 60.134 57.143 12.42 0.00 0.00 4.81
1091 1108 4.547367 CGGTTCATCCCCCTCGCC 62.547 72.222 0.00 0.00 0.00 5.54
1092 1109 4.191015 GGTTCATCCCCCTCGCCC 62.191 72.222 0.00 0.00 0.00 6.13
1093 1110 4.191015 GTTCATCCCCCTCGCCCC 62.191 72.222 0.00 0.00 0.00 5.80
1096 1113 4.574614 CATCCCCCTCGCCCCCTA 62.575 72.222 0.00 0.00 0.00 3.53
1097 1114 4.576374 ATCCCCCTCGCCCCCTAC 62.576 72.222 0.00 0.00 0.00 3.18
1147 1164 4.770874 GCTGTAAAGCGGGCGGGA 62.771 66.667 0.00 0.00 0.00 5.14
1234 1269 2.291741 GCCATTTTCTATTCCAGCGGAG 59.708 50.000 0.00 0.00 31.21 4.63
1235 1270 2.880890 CCATTTTCTATTCCAGCGGAGG 59.119 50.000 0.00 0.00 31.21 4.30
1236 1271 2.710096 TTTTCTATTCCAGCGGAGGG 57.290 50.000 0.00 0.00 31.21 4.30
1237 1272 1.874129 TTTCTATTCCAGCGGAGGGA 58.126 50.000 0.00 0.00 31.21 4.20
1303 1338 2.960129 GGCTCGTATCGGCCAACG 60.960 66.667 14.35 14.35 46.84 4.10
1326 1361 1.304381 AGGTCCACGGCGGTTAGTA 60.304 57.895 13.24 0.00 35.57 1.82
1379 1414 3.119137 TGTTATCTATCGATCGCCATGGG 60.119 47.826 15.13 3.69 0.00 4.00
1604 1640 1.204113 GCCCCCTATCCCATCTCCTG 61.204 65.000 0.00 0.00 0.00 3.86
1613 1649 0.613260 CCCATCTCCTGTCCGTCAAA 59.387 55.000 0.00 0.00 0.00 2.69
1639 1675 2.171940 CTTGCGTTGCAGCTCGAC 59.828 61.111 13.17 6.46 40.61 4.20
1646 1682 1.742880 TTGCAGCTCGACTCATGGC 60.743 57.895 0.00 0.00 0.00 4.40
1656 1692 0.743097 GACTCATGGCAGCATTTCCC 59.257 55.000 0.00 0.00 0.00 3.97
1661 1697 1.610554 ATGGCAGCATTTCCCTGTGC 61.611 55.000 0.00 0.00 41.57 4.57
1662 1698 2.575461 GCAGCATTTCCCTGTGCC 59.425 61.111 0.00 0.00 42.20 5.01
1664 1700 1.941999 GCAGCATTTCCCTGTGCCTC 61.942 60.000 0.00 0.00 42.20 4.70
1808 1855 0.730265 TTCACCGCCATTAATGTCGC 59.270 50.000 13.17 9.59 0.00 5.19
1953 2000 1.754234 GGCCATGGTGGTGGTGATC 60.754 63.158 14.67 0.00 40.46 2.92
1992 2039 1.374758 CTTCGGGTCAGTCAGTGCC 60.375 63.158 0.00 0.00 0.00 5.01
2005 2055 1.986757 AGTGCCGATGCTCACCTCT 60.987 57.895 0.00 0.00 38.71 3.69
2008 2058 1.520342 GCCGATGCTCACCTCTCAC 60.520 63.158 0.00 0.00 33.53 3.51
2010 2060 1.326213 CCGATGCTCACCTCTCACCT 61.326 60.000 0.00 0.00 0.00 4.00
2011 2061 0.102120 CGATGCTCACCTCTCACCTC 59.898 60.000 0.00 0.00 0.00 3.85
2012 2062 0.463620 GATGCTCACCTCTCACCTCC 59.536 60.000 0.00 0.00 0.00 4.30
2013 2063 0.980231 ATGCTCACCTCTCACCTCCC 60.980 60.000 0.00 0.00 0.00 4.30
2014 2064 1.610673 GCTCACCTCTCACCTCCCA 60.611 63.158 0.00 0.00 0.00 4.37
2015 2065 1.612395 GCTCACCTCTCACCTCCCAG 61.612 65.000 0.00 0.00 0.00 4.45
2063 2113 4.142491 ACTGTTTGTTTTCTGCACGATTCA 60.142 37.500 0.00 0.00 0.00 2.57
2071 2121 2.342179 TCTGCACGATTCATTAACGCA 58.658 42.857 0.00 0.00 0.00 5.24
2073 2123 1.801178 TGCACGATTCATTAACGCACA 59.199 42.857 0.00 0.00 0.00 4.57
2092 2142 5.390040 CGCACACACCAAAAGTAATCGATTA 60.390 40.000 13.85 13.85 0.00 1.75
2300 2350 2.749621 GGTGAGTGGGTGATTGATTGAC 59.250 50.000 0.00 0.00 0.00 3.18
2331 2381 3.110178 GGGTGGCTTCGTTCGTCG 61.110 66.667 0.00 0.00 41.41 5.12
2336 2386 2.087009 GGCTTCGTTCGTCGTCCTG 61.087 63.158 0.00 0.00 40.80 3.86
2456 2506 2.264480 CCATGGACTTCGACGCCA 59.736 61.111 5.56 7.35 35.91 5.69
2510 2560 3.591254 AAGAAGCCCTGCGACGACC 62.591 63.158 0.00 0.00 0.00 4.79
3090 3140 4.629115 GCCACCACGCTTGCACAC 62.629 66.667 0.00 0.00 0.00 3.82
3091 3141 3.964875 CCACCACGCTTGCACACC 61.965 66.667 0.00 0.00 0.00 4.16
3094 3144 4.312231 CCACGCTTGCACACCACG 62.312 66.667 0.00 0.00 0.00 4.94
3095 3145 3.268603 CACGCTTGCACACCACGA 61.269 61.111 0.00 0.00 0.00 4.35
3096 3146 3.269347 ACGCTTGCACACCACGAC 61.269 61.111 0.00 0.00 0.00 4.34
3098 3148 2.818487 CGCTTGCACACCACGACAA 61.818 57.895 0.00 0.00 0.00 3.18
3099 3149 1.431440 GCTTGCACACCACGACAAA 59.569 52.632 0.00 0.00 0.00 2.83
3102 3152 1.937223 CTTGCACACCACGACAAACTA 59.063 47.619 0.00 0.00 0.00 2.24
3103 3153 1.292061 TGCACACCACGACAAACTAC 58.708 50.000 0.00 0.00 0.00 2.73
3104 3154 0.231279 GCACACCACGACAAACTACG 59.769 55.000 0.00 0.00 0.00 3.51
3105 3155 0.231279 CACACCACGACAAACTACGC 59.769 55.000 0.00 0.00 0.00 4.42
3106 3156 0.103572 ACACCACGACAAACTACGCT 59.896 50.000 0.00 0.00 0.00 5.07
3107 3157 1.337703 ACACCACGACAAACTACGCTA 59.662 47.619 0.00 0.00 0.00 4.26
3108 3158 1.717645 CACCACGACAAACTACGCTAC 59.282 52.381 0.00 0.00 0.00 3.58
3109 3159 1.610522 ACCACGACAAACTACGCTACT 59.389 47.619 0.00 0.00 0.00 2.57
3110 3160 1.983605 CCACGACAAACTACGCTACTG 59.016 52.381 0.00 0.00 0.00 2.74
3111 3161 2.606308 CCACGACAAACTACGCTACTGT 60.606 50.000 0.00 0.00 0.00 3.55
3112 3162 3.365264 CCACGACAAACTACGCTACTGTA 60.365 47.826 0.00 0.00 0.00 2.74
3127 3180 1.075542 CTGTATTTTGGCTGCGTCGA 58.924 50.000 0.00 0.00 0.00 4.20
3137 3190 0.867753 GCTGCGTCGATGGTCTACAG 60.868 60.000 6.79 5.85 0.00 2.74
3143 3196 3.221222 GATGGTCTACAGCGGCCT 58.779 61.111 0.00 0.00 0.00 5.19
3164 3217 1.434696 GGCATGTGATTTCGCAGGG 59.565 57.895 7.74 0.68 39.97 4.45
3165 3218 1.031571 GGCATGTGATTTCGCAGGGA 61.032 55.000 7.74 0.00 39.97 4.20
3166 3219 0.810648 GCATGTGATTTCGCAGGGAA 59.189 50.000 7.74 0.00 39.97 3.97
3337 3390 0.824759 GAGCCCCAGGTAGTACTGTG 59.175 60.000 5.39 0.10 36.75 3.66
3352 3405 6.360370 AGTACTGTGCTCTTAAATTCAGGA 57.640 37.500 0.00 0.00 0.00 3.86
3353 3406 6.769512 AGTACTGTGCTCTTAAATTCAGGAA 58.230 36.000 0.00 0.00 0.00 3.36
3354 3407 7.398024 AGTACTGTGCTCTTAAATTCAGGAAT 58.602 34.615 0.00 0.00 0.00 3.01
3391 3444 4.026804 GTCTGTGTTTTGTACTGACAGACG 60.027 45.833 10.08 0.00 44.22 4.18
3414 3474 3.243301 TGAACTCTGAACTGTGTACCGAC 60.243 47.826 0.00 0.00 0.00 4.79
3503 3563 4.047059 GTCGTCGGCACCTTCGGA 62.047 66.667 0.00 0.00 0.00 4.55
3525 3585 5.800941 GGATACGTCTTCTTCTTGTACACAG 59.199 44.000 0.00 0.00 0.00 3.66
3527 3587 4.608951 ACGTCTTCTTCTTGTACACAGAC 58.391 43.478 0.00 0.24 0.00 3.51
3531 3591 3.364889 TCTTCTTGTACACAGACACGG 57.635 47.619 0.00 0.00 0.00 4.94
3545 3649 0.237761 ACACGGACGAGTCTCTTTCG 59.762 55.000 5.52 5.52 43.38 3.46
3555 3659 3.570559 GAGTCTCTTTCGGTCTGAAGTG 58.429 50.000 0.00 0.00 37.99 3.16
3566 3674 3.240606 CTGAAGTGGCGCCGTGTTG 62.241 63.158 23.90 6.35 0.00 3.33
3591 3699 4.406943 GTGACGAAGATCAAAATCCTTGC 58.593 43.478 0.00 0.00 31.78 4.01
3593 3701 2.420022 ACGAAGATCAAAATCCTTGCGG 59.580 45.455 0.00 0.00 31.78 5.69
3775 3883 2.666526 GCCCTCGCGATCCCAATC 60.667 66.667 10.36 0.00 0.00 2.67
3778 3886 0.882042 CCCTCGCGATCCCAATCAAG 60.882 60.000 10.36 0.00 31.76 3.02
3826 3938 8.662141 GTTACGTTGTTACCATATCATTGTCTT 58.338 33.333 0.00 0.00 0.00 3.01
3827 3939 7.681939 ACGTTGTTACCATATCATTGTCTTT 57.318 32.000 0.00 0.00 0.00 2.52
3829 3941 9.391006 ACGTTGTTACCATATCATTGTCTTTAT 57.609 29.630 0.00 0.00 0.00 1.40
3908 4023 0.303493 CGGTTGGTCTGTTTGACGTG 59.697 55.000 0.00 0.00 46.24 4.49
4070 4185 2.207229 CCCCCGATATCGCAGGTCA 61.207 63.158 19.78 0.00 38.18 4.02
4083 4198 2.446435 GCAGGTCAGTCTCTCTCTCTT 58.554 52.381 0.00 0.00 0.00 2.85
4084 4199 3.616219 GCAGGTCAGTCTCTCTCTCTTA 58.384 50.000 0.00 0.00 0.00 2.10
4085 4200 3.627577 GCAGGTCAGTCTCTCTCTCTTAG 59.372 52.174 0.00 0.00 0.00 2.18
4128 4243 5.480772 TCAGAAGAAGAGGGAAAATACGTCT 59.519 40.000 0.00 0.00 34.83 4.18
4129 4244 5.808030 CAGAAGAAGAGGGAAAATACGTCTC 59.192 44.000 0.00 0.00 32.44 3.36
4130 4245 5.717654 AGAAGAAGAGGGAAAATACGTCTCT 59.282 40.000 0.00 0.00 36.49 3.10
4137 4252 6.887626 AGGGAAAATACGTCTCTCTCTATC 57.112 41.667 0.00 0.00 0.00 2.08
4141 4256 7.308348 GGGAAAATACGTCTCTCTCTATCTGAG 60.308 44.444 0.00 0.00 43.96 3.35
4142 4257 7.227910 GGAAAATACGTCTCTCTCTATCTGAGT 59.772 40.741 0.00 0.00 43.13 3.41
4143 4258 9.263538 GAAAATACGTCTCTCTCTATCTGAGTA 57.736 37.037 0.00 0.00 43.13 2.59
4146 4261 4.100344 ACGTCTCTCTCTATCTGAGTAGCA 59.900 45.833 0.00 0.00 43.13 3.49
4147 4262 4.686091 CGTCTCTCTCTATCTGAGTAGCAG 59.314 50.000 0.00 0.00 46.31 4.24
4148 4263 4.997395 GTCTCTCTCTATCTGAGTAGCAGG 59.003 50.000 0.00 0.00 44.98 4.85
4154 4269 2.977772 ATCTGAGTAGCAGGCACTTC 57.022 50.000 0.00 0.00 44.98 3.01
4155 4270 1.632589 TCTGAGTAGCAGGCACTTCA 58.367 50.000 0.00 0.00 44.98 3.02
4157 4272 2.167281 TCTGAGTAGCAGGCACTTCATC 59.833 50.000 0.00 0.00 44.98 2.92
4158 4273 2.168106 CTGAGTAGCAGGCACTTCATCT 59.832 50.000 0.00 0.00 41.07 2.90
4160 4275 3.194062 GAGTAGCAGGCACTTCATCTTC 58.806 50.000 0.00 0.00 34.60 2.87
4161 4276 2.568956 AGTAGCAGGCACTTCATCTTCA 59.431 45.455 0.00 0.00 34.60 3.02
4163 4278 1.627329 AGCAGGCACTTCATCTTCAGA 59.373 47.619 0.00 0.00 34.60 3.27
4164 4279 2.039480 AGCAGGCACTTCATCTTCAGAA 59.961 45.455 0.00 0.00 34.60 3.02
4165 4280 2.419324 GCAGGCACTTCATCTTCAGAAG 59.581 50.000 3.45 3.45 46.08 2.85
4166 4281 3.867600 GCAGGCACTTCATCTTCAGAAGA 60.868 47.826 15.44 15.44 44.00 2.87
4167 4282 3.933955 CAGGCACTTCATCTTCAGAAGAG 59.066 47.826 17.91 10.30 44.00 2.85
4168 4283 3.055240 AGGCACTTCATCTTCAGAAGAGG 60.055 47.826 17.24 17.24 44.00 3.69
4169 4284 3.055530 GGCACTTCATCTTCAGAAGAGGA 60.056 47.826 21.10 21.10 45.56 3.71
4192 4307 5.560966 AAAAATAACATTCTCGTGCCGAT 57.439 34.783 0.00 0.00 34.61 4.18
4193 4308 5.560966 AAAATAACATTCTCGTGCCGATT 57.439 34.783 0.00 0.00 34.61 3.34
4194 4309 4.536364 AATAACATTCTCGTGCCGATTG 57.464 40.909 0.00 0.87 34.61 2.67
4195 4310 0.447801 AACATTCTCGTGCCGATTGC 59.552 50.000 0.00 0.00 41.77 3.56
4196 4311 0.391661 ACATTCTCGTGCCGATTGCT 60.392 50.000 0.00 0.00 42.00 3.91
4197 4312 0.027194 CATTCTCGTGCCGATTGCTG 59.973 55.000 0.00 0.00 42.00 4.41
4198 4313 0.391661 ATTCTCGTGCCGATTGCTGT 60.392 50.000 0.00 0.00 42.00 4.40
4199 4314 1.291184 TTCTCGTGCCGATTGCTGTG 61.291 55.000 0.00 0.00 42.00 3.66
4200 4315 2.029288 CTCGTGCCGATTGCTGTGT 61.029 57.895 0.00 0.00 42.00 3.72
4203 4318 1.654220 GTGCCGATTGCTGTGTGTT 59.346 52.632 0.00 0.00 42.00 3.32
4210 4325 2.351060 CGATTGCTGTGTGTTGCAGATT 60.351 45.455 0.00 0.00 40.46 2.40
4225 4340 3.632145 TGCAGATTCTGAGCATACTACGA 59.368 43.478 17.87 0.00 32.44 3.43
4423 4538 2.815211 GAACGCTGCAGCCGATCA 60.815 61.111 32.07 0.00 37.91 2.92
4444 4559 2.426522 TCCAGCTTCGATTGACCTTTG 58.573 47.619 0.00 0.00 0.00 2.77
4445 4560 2.038426 TCCAGCTTCGATTGACCTTTGA 59.962 45.455 0.00 0.00 0.00 2.69
4569 4685 0.327480 ACCCAGGGACATGATAGCCA 60.327 55.000 14.54 0.00 0.00 4.75
4616 4732 6.415798 AAAACAAAGTGAAAAATGGAACGG 57.584 33.333 0.00 0.00 0.00 4.44
4667 4784 0.521735 GGACACAAAGCCACGATTCC 59.478 55.000 0.00 0.00 0.00 3.01
4674 4791 1.270907 AAGCCACGATTCCTCTCAGT 58.729 50.000 0.00 0.00 0.00 3.41
5003 5186 5.219343 TGATACATATGAAGGTCAGGCAG 57.781 43.478 10.38 0.00 0.00 4.85
5036 5219 1.686052 TGGTTGCCATGAAAACTCCAC 59.314 47.619 0.00 0.00 0.00 4.02
5147 5330 1.137282 GAGATTCCCGGTCTCCTCAAC 59.863 57.143 8.98 0.00 36.87 3.18
5178 5361 4.463050 AGGTGGATTCCAGGTAACAAAA 57.537 40.909 5.39 0.00 41.41 2.44
5190 5373 5.648092 CCAGGTAACAAAAAGATCTCGGAAT 59.352 40.000 0.00 0.00 41.41 3.01
5267 5450 5.013183 ACTTTGACTGCTTAACCTCTGGTAT 59.987 40.000 0.00 0.00 33.12 2.73
5361 5553 1.478916 GGAGAGACTACAGGCACCTTC 59.521 57.143 0.00 0.00 0.00 3.46
5431 5623 6.918022 AGAAGCAACTTTTATTGTTTCCTTCG 59.082 34.615 10.31 0.00 45.67 3.79
5439 5631 1.464734 TTGTTTCCTTCGGCAACACA 58.535 45.000 0.00 0.00 30.12 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.776662 AGATGCCAATGCTTGCAGAT 58.223 45.000 0.87 0.00 41.46 2.90
3 4 0.171679 CGAAGATGCCAATGCTTGCA 59.828 50.000 0.00 0.00 42.52 4.08
4 5 1.143969 GCGAAGATGCCAATGCTTGC 61.144 55.000 0.00 0.00 38.71 4.01
5 6 0.171679 TGCGAAGATGCCAATGCTTG 59.828 50.000 0.00 0.00 38.71 4.01
6 7 0.889994 TTGCGAAGATGCCAATGCTT 59.110 45.000 0.00 0.00 38.71 3.91
7 8 0.171903 GTTGCGAAGATGCCAATGCT 59.828 50.000 0.00 0.00 38.71 3.79
8 9 1.135699 CGTTGCGAAGATGCCAATGC 61.136 55.000 0.00 0.00 38.26 3.56
9 10 0.447406 TCGTTGCGAAGATGCCAATG 59.553 50.000 0.00 0.00 31.06 2.82
10 11 0.729116 CTCGTTGCGAAGATGCCAAT 59.271 50.000 0.00 0.00 34.74 3.16
11 12 1.298157 CCTCGTTGCGAAGATGCCAA 61.298 55.000 0.00 0.00 34.74 4.52
12 13 1.741401 CCTCGTTGCGAAGATGCCA 60.741 57.895 0.00 0.00 34.74 4.92
13 14 3.093278 CCTCGTTGCGAAGATGCC 58.907 61.111 0.00 0.00 34.74 4.40
14 15 2.401195 GCCTCGTTGCGAAGATGC 59.599 61.111 1.75 1.75 34.74 3.91
15 16 1.741401 TGGCCTCGTTGCGAAGATG 60.741 57.895 3.32 0.00 34.74 2.90
16 17 1.741770 GTGGCCTCGTTGCGAAGAT 60.742 57.895 3.32 0.00 34.74 2.40
17 18 2.357034 GTGGCCTCGTTGCGAAGA 60.357 61.111 3.32 0.00 34.74 2.87
18 19 2.664851 TGTGGCCTCGTTGCGAAG 60.665 61.111 3.32 0.00 34.74 3.79
19 20 2.664851 CTGTGGCCTCGTTGCGAA 60.665 61.111 3.32 0.00 34.74 4.70
20 21 3.611674 TCTGTGGCCTCGTTGCGA 61.612 61.111 3.32 0.00 0.00 5.10
21 22 3.414700 GTCTGTGGCCTCGTTGCG 61.415 66.667 3.32 0.00 0.00 4.85
22 23 3.050275 GGTCTGTGGCCTCGTTGC 61.050 66.667 3.32 0.00 0.00 4.17
23 24 1.669115 CTGGTCTGTGGCCTCGTTG 60.669 63.158 3.32 0.00 0.00 4.10
24 25 0.830444 TACTGGTCTGTGGCCTCGTT 60.830 55.000 3.32 0.00 0.00 3.85
25 26 0.830444 TTACTGGTCTGTGGCCTCGT 60.830 55.000 3.32 0.00 0.00 4.18
26 27 0.389948 GTTACTGGTCTGTGGCCTCG 60.390 60.000 3.32 0.00 0.00 4.63
27 28 0.977395 AGTTACTGGTCTGTGGCCTC 59.023 55.000 3.32 0.00 0.00 4.70
28 29 2.320681 TAGTTACTGGTCTGTGGCCT 57.679 50.000 3.32 0.00 0.00 5.19
29 30 3.629142 AATAGTTACTGGTCTGTGGCC 57.371 47.619 0.00 0.00 0.00 5.36
30 31 5.731591 AGTAAATAGTTACTGGTCTGTGGC 58.268 41.667 14.43 0.00 46.64 5.01
52 53 5.058490 GGACTGTCCTACTACTGCTAGTAG 58.942 50.000 19.53 16.83 46.90 2.57
53 54 5.033589 GGACTGTCCTACTACTGCTAGTA 57.966 47.826 19.53 0.00 34.79 1.82
54 55 3.888583 GGACTGTCCTACTACTGCTAGT 58.111 50.000 19.53 0.00 37.04 2.57
67 68 0.108756 GTGCTTCGGTAGGACTGTCC 60.109 60.000 19.20 19.20 41.60 4.02
68 69 0.108756 GGTGCTTCGGTAGGACTGTC 60.109 60.000 6.27 0.00 44.06 3.51
69 70 1.542187 GGGTGCTTCGGTAGGACTGT 61.542 60.000 6.27 0.00 44.06 3.55
70 71 1.218316 GGGTGCTTCGGTAGGACTG 59.782 63.158 6.27 0.00 44.06 3.51
71 72 1.988406 GGGGTGCTTCGGTAGGACT 60.988 63.158 6.27 0.00 44.06 3.85
72 73 2.582978 GGGGTGCTTCGGTAGGAC 59.417 66.667 0.00 0.00 43.89 3.85
73 74 3.072468 CGGGGTGCTTCGGTAGGA 61.072 66.667 0.00 0.00 0.00 2.94
74 75 2.459202 AAACGGGGTGCTTCGGTAGG 62.459 60.000 0.00 0.00 0.00 3.18
75 76 0.604511 AAAACGGGGTGCTTCGGTAG 60.605 55.000 0.00 0.00 0.00 3.18
76 77 0.683973 TAAAACGGGGTGCTTCGGTA 59.316 50.000 0.00 0.00 0.00 4.02
77 78 0.886043 GTAAAACGGGGTGCTTCGGT 60.886 55.000 0.00 0.00 0.00 4.69
78 79 0.885596 TGTAAAACGGGGTGCTTCGG 60.886 55.000 0.00 0.00 0.00 4.30
79 80 0.945813 TTGTAAAACGGGGTGCTTCG 59.054 50.000 0.00 0.00 0.00 3.79
80 81 3.653539 ATTTGTAAAACGGGGTGCTTC 57.346 42.857 0.00 0.00 0.00 3.86
81 82 4.123506 CAAATTTGTAAAACGGGGTGCTT 58.876 39.130 10.15 0.00 0.00 3.91
82 83 3.493524 CCAAATTTGTAAAACGGGGTGCT 60.494 43.478 16.73 0.00 0.00 4.40
83 84 2.803386 CCAAATTTGTAAAACGGGGTGC 59.197 45.455 16.73 0.00 0.00 5.01
84 85 4.061357 ACCAAATTTGTAAAACGGGGTG 57.939 40.909 16.73 0.00 0.00 4.61
85 86 4.443621 CAACCAAATTTGTAAAACGGGGT 58.556 39.130 16.73 1.57 0.00 4.95
86 87 3.248841 GCAACCAAATTTGTAAAACGGGG 59.751 43.478 16.73 0.94 0.00 5.73
87 88 3.248841 GGCAACCAAATTTGTAAAACGGG 59.751 43.478 16.73 1.64 0.00 5.28
88 89 3.871594 TGGCAACCAAATTTGTAAAACGG 59.128 39.130 16.73 2.37 0.00 4.44
89 90 5.438972 CATGGCAACCAAATTTGTAAAACG 58.561 37.500 16.73 3.16 36.95 3.60
90 91 5.211454 GCATGGCAACCAAATTTGTAAAAC 58.789 37.500 16.73 5.19 36.95 2.43
91 92 4.024556 CGCATGGCAACCAAATTTGTAAAA 60.025 37.500 16.73 0.00 36.95 1.52
92 93 3.496130 CGCATGGCAACCAAATTTGTAAA 59.504 39.130 16.73 0.00 36.95 2.01
93 94 3.062763 CGCATGGCAACCAAATTTGTAA 58.937 40.909 16.73 0.00 36.95 2.41
94 95 2.036475 ACGCATGGCAACCAAATTTGTA 59.964 40.909 16.73 0.00 36.95 2.41
95 96 1.202627 ACGCATGGCAACCAAATTTGT 60.203 42.857 16.73 2.76 36.95 2.83
96 97 1.194997 CACGCATGGCAACCAAATTTG 59.805 47.619 11.40 11.40 36.95 2.32
97 98 1.510776 CACGCATGGCAACCAAATTT 58.489 45.000 0.00 0.00 36.95 1.82
98 99 0.950071 GCACGCATGGCAACCAAATT 60.950 50.000 0.00 0.00 36.95 1.82
99 100 1.374505 GCACGCATGGCAACCAAAT 60.375 52.632 0.00 0.00 36.95 2.32
100 101 2.028778 GCACGCATGGCAACCAAA 59.971 55.556 0.00 0.00 36.95 3.28
101 102 4.340019 CGCACGCATGGCAACCAA 62.340 61.111 0.00 0.00 36.95 3.67
104 105 3.550339 TTTCCGCACGCATGGCAAC 62.550 57.895 0.00 0.00 0.00 4.17
105 106 3.266230 CTTTCCGCACGCATGGCAA 62.266 57.895 0.00 0.00 0.00 4.52
106 107 3.736100 CTTTCCGCACGCATGGCA 61.736 61.111 0.00 0.00 0.00 4.92
107 108 2.764314 ATCTTTCCGCACGCATGGC 61.764 57.895 0.00 0.00 0.00 4.40
108 109 1.063006 CATCTTTCCGCACGCATGG 59.937 57.895 0.00 0.00 0.00 3.66
109 110 0.447406 TTCATCTTTCCGCACGCATG 59.553 50.000 0.00 0.00 0.00 4.06
110 111 0.447801 GTTCATCTTTCCGCACGCAT 59.552 50.000 0.00 0.00 0.00 4.73
111 112 1.573829 GGTTCATCTTTCCGCACGCA 61.574 55.000 0.00 0.00 0.00 5.24
112 113 1.134694 GGTTCATCTTTCCGCACGC 59.865 57.895 0.00 0.00 0.00 5.34
113 114 1.086696 ATGGTTCATCTTTCCGCACG 58.913 50.000 0.00 0.00 0.00 5.34
114 115 1.812571 ACATGGTTCATCTTTCCGCAC 59.187 47.619 0.00 0.00 0.00 5.34
115 116 1.811965 CACATGGTTCATCTTTCCGCA 59.188 47.619 0.00 0.00 0.00 5.69
116 117 1.468054 GCACATGGTTCATCTTTCCGC 60.468 52.381 0.00 0.00 0.00 5.54
117 118 1.133025 GGCACATGGTTCATCTTTCCG 59.867 52.381 0.00 0.00 0.00 4.30
118 119 1.133025 CGGCACATGGTTCATCTTTCC 59.867 52.381 0.00 0.00 0.00 3.13
119 120 2.083774 TCGGCACATGGTTCATCTTTC 58.916 47.619 0.00 0.00 0.00 2.62
120 121 2.198827 TCGGCACATGGTTCATCTTT 57.801 45.000 0.00 0.00 0.00 2.52
121 122 2.198827 TTCGGCACATGGTTCATCTT 57.801 45.000 0.00 0.00 0.00 2.40
122 123 2.019249 CATTCGGCACATGGTTCATCT 58.981 47.619 0.00 0.00 0.00 2.90
123 124 1.534595 GCATTCGGCACATGGTTCATC 60.535 52.381 0.00 0.00 43.97 2.92
124 125 0.457035 GCATTCGGCACATGGTTCAT 59.543 50.000 0.00 0.00 43.97 2.57
125 126 1.882311 GCATTCGGCACATGGTTCA 59.118 52.632 0.00 0.00 43.97 3.18
126 127 1.226379 CGCATTCGGCACATGGTTC 60.226 57.895 0.00 0.00 45.17 3.62
127 128 1.031571 ATCGCATTCGGCACATGGTT 61.032 50.000 0.00 0.00 45.17 3.67
128 129 1.031571 AATCGCATTCGGCACATGGT 61.032 50.000 0.00 0.00 45.17 3.55
129 130 0.317269 GAATCGCATTCGGCACATGG 60.317 55.000 0.00 0.00 45.17 3.66
130 131 0.377905 TGAATCGCATTCGGCACATG 59.622 50.000 0.00 0.00 45.17 3.21
131 132 0.659427 CTGAATCGCATTCGGCACAT 59.341 50.000 5.23 0.00 45.17 3.21
132 133 0.390998 TCTGAATCGCATTCGGCACA 60.391 50.000 10.92 0.00 43.69 4.57
133 134 0.940126 ATCTGAATCGCATTCGGCAC 59.060 50.000 10.92 0.00 43.69 5.01
134 135 0.939419 CATCTGAATCGCATTCGGCA 59.061 50.000 10.92 3.99 43.69 5.69
135 136 0.940126 ACATCTGAATCGCATTCGGC 59.060 50.000 10.92 0.00 43.69 5.54
136 137 3.555547 TGTAACATCTGAATCGCATTCGG 59.444 43.478 9.96 9.96 45.03 4.30
137 138 4.268644 ACTGTAACATCTGAATCGCATTCG 59.731 41.667 4.98 0.00 42.15 3.34
138 139 5.521735 AGACTGTAACATCTGAATCGCATTC 59.478 40.000 2.93 2.93 39.70 2.67
139 140 5.423015 AGACTGTAACATCTGAATCGCATT 58.577 37.500 0.00 0.00 0.00 3.56
140 141 5.016051 AGACTGTAACATCTGAATCGCAT 57.984 39.130 0.00 0.00 0.00 4.73
141 142 4.456280 AGACTGTAACATCTGAATCGCA 57.544 40.909 0.00 0.00 0.00 5.10
142 143 8.575565 TTATTAGACTGTAACATCTGAATCGC 57.424 34.615 0.00 0.00 0.00 4.58
146 147 8.988060 TGGGATTATTAGACTGTAACATCTGAA 58.012 33.333 0.00 0.00 0.00 3.02
147 148 8.547481 TGGGATTATTAGACTGTAACATCTGA 57.453 34.615 0.00 0.00 0.00 3.27
148 149 9.265901 CTTGGGATTATTAGACTGTAACATCTG 57.734 37.037 0.00 0.00 0.00 2.90
149 150 9.213777 TCTTGGGATTATTAGACTGTAACATCT 57.786 33.333 0.00 0.00 0.00 2.90
150 151 9.832445 TTCTTGGGATTATTAGACTGTAACATC 57.168 33.333 0.00 0.00 0.00 3.06
154 155 9.120538 GCATTTCTTGGGATTATTAGACTGTAA 57.879 33.333 0.00 0.00 0.00 2.41
155 156 8.494433 AGCATTTCTTGGGATTATTAGACTGTA 58.506 33.333 0.00 0.00 0.00 2.74
156 157 7.349598 AGCATTTCTTGGGATTATTAGACTGT 58.650 34.615 0.00 0.00 0.00 3.55
157 158 7.814264 AGCATTTCTTGGGATTATTAGACTG 57.186 36.000 0.00 0.00 0.00 3.51
158 159 7.657761 CGTAGCATTTCTTGGGATTATTAGACT 59.342 37.037 0.00 0.00 0.00 3.24
159 160 7.656137 TCGTAGCATTTCTTGGGATTATTAGAC 59.344 37.037 0.00 0.00 0.00 2.59
160 161 7.656137 GTCGTAGCATTTCTTGGGATTATTAGA 59.344 37.037 0.00 0.00 0.00 2.10
161 162 7.657761 AGTCGTAGCATTTCTTGGGATTATTAG 59.342 37.037 0.00 0.00 0.00 1.73
162 163 7.506114 AGTCGTAGCATTTCTTGGGATTATTA 58.494 34.615 0.00 0.00 0.00 0.98
163 164 6.357367 AGTCGTAGCATTTCTTGGGATTATT 58.643 36.000 0.00 0.00 0.00 1.40
164 165 5.930135 AGTCGTAGCATTTCTTGGGATTAT 58.070 37.500 0.00 0.00 0.00 1.28
165 166 5.353394 AGTCGTAGCATTTCTTGGGATTA 57.647 39.130 0.00 0.00 0.00 1.75
166 167 4.222124 AGTCGTAGCATTTCTTGGGATT 57.778 40.909 0.00 0.00 0.00 3.01
167 168 3.914426 AGTCGTAGCATTTCTTGGGAT 57.086 42.857 0.00 0.00 0.00 3.85
168 169 3.767673 ACTAGTCGTAGCATTTCTTGGGA 59.232 43.478 0.00 0.00 0.00 4.37
169 170 4.124851 ACTAGTCGTAGCATTTCTTGGG 57.875 45.455 0.00 0.00 0.00 4.12
170 171 6.331061 ACTAACTAGTCGTAGCATTTCTTGG 58.669 40.000 0.00 0.00 0.00 3.61
171 172 7.813852 AACTAACTAGTCGTAGCATTTCTTG 57.186 36.000 0.00 0.00 34.99 3.02
172 173 8.954350 TCTAACTAACTAGTCGTAGCATTTCTT 58.046 33.333 0.00 0.00 34.99 2.52
173 174 8.503458 TCTAACTAACTAGTCGTAGCATTTCT 57.497 34.615 0.00 0.00 34.99 2.52
174 175 9.171701 CATCTAACTAACTAGTCGTAGCATTTC 57.828 37.037 0.00 0.00 34.99 2.17
175 176 7.648510 GCATCTAACTAACTAGTCGTAGCATTT 59.351 37.037 0.00 0.00 34.99 2.32
176 177 7.140048 GCATCTAACTAACTAGTCGTAGCATT 58.860 38.462 0.00 0.00 34.99 3.56
177 178 6.294065 GGCATCTAACTAACTAGTCGTAGCAT 60.294 42.308 0.00 0.00 34.99 3.79
178 179 5.008415 GGCATCTAACTAACTAGTCGTAGCA 59.992 44.000 0.00 0.00 34.99 3.49
179 180 5.239087 AGGCATCTAACTAACTAGTCGTAGC 59.761 44.000 0.00 0.00 34.99 3.58
180 181 6.864360 AGGCATCTAACTAACTAGTCGTAG 57.136 41.667 0.00 0.00 34.99 3.51
181 182 7.636150 AAAGGCATCTAACTAACTAGTCGTA 57.364 36.000 0.00 0.00 34.99 3.43
182 183 6.527057 AAAGGCATCTAACTAACTAGTCGT 57.473 37.500 0.00 0.00 34.99 4.34
183 184 7.760340 AGAAAAAGGCATCTAACTAACTAGTCG 59.240 37.037 0.00 0.00 34.99 4.18
184 185 9.438228 AAGAAAAAGGCATCTAACTAACTAGTC 57.562 33.333 0.00 0.00 34.99 2.59
185 186 9.794719 AAAGAAAAAGGCATCTAACTAACTAGT 57.205 29.630 0.00 0.00 38.39 2.57
187 188 9.227777 GGAAAGAAAAAGGCATCTAACTAACTA 57.772 33.333 0.00 0.00 0.00 2.24
188 189 7.094762 CGGAAAGAAAAAGGCATCTAACTAACT 60.095 37.037 0.00 0.00 0.00 2.24
189 190 7.021790 CGGAAAGAAAAAGGCATCTAACTAAC 58.978 38.462 0.00 0.00 0.00 2.34
190 191 6.938030 TCGGAAAGAAAAAGGCATCTAACTAA 59.062 34.615 0.00 0.00 0.00 2.24
191 192 6.469410 TCGGAAAGAAAAAGGCATCTAACTA 58.531 36.000 0.00 0.00 0.00 2.24
192 193 5.313712 TCGGAAAGAAAAAGGCATCTAACT 58.686 37.500 0.00 0.00 0.00 2.24
193 194 5.622770 TCGGAAAGAAAAAGGCATCTAAC 57.377 39.130 0.00 0.00 0.00 2.34
194 195 6.488683 TCTTTCGGAAAGAAAAAGGCATCTAA 59.511 34.615 26.38 3.21 46.98 2.10
195 196 6.001460 TCTTTCGGAAAGAAAAAGGCATCTA 58.999 36.000 26.38 3.60 46.98 1.98
196 197 4.827284 TCTTTCGGAAAGAAAAAGGCATCT 59.173 37.500 26.38 0.00 46.98 2.90
197 198 5.121221 TCTTTCGGAAAGAAAAAGGCATC 57.879 39.130 26.38 0.00 46.98 3.91
198 199 4.584743 ACTCTTTCGGAAAGAAAAAGGCAT 59.415 37.500 27.69 8.67 46.98 4.40
199 200 3.951680 ACTCTTTCGGAAAGAAAAAGGCA 59.048 39.130 27.69 8.80 46.98 4.75
200 201 4.569761 ACTCTTTCGGAAAGAAAAAGGC 57.430 40.909 27.69 0.00 46.98 4.35
201 202 6.613755 TGTACTCTTTCGGAAAGAAAAAGG 57.386 37.500 27.69 19.76 46.98 3.11
202 203 6.910972 GGTTGTACTCTTTCGGAAAGAAAAAG 59.089 38.462 27.69 20.05 46.98 2.27
203 204 6.374894 TGGTTGTACTCTTTCGGAAAGAAAAA 59.625 34.615 27.69 16.04 46.98 1.94
204 205 5.881443 TGGTTGTACTCTTTCGGAAAGAAAA 59.119 36.000 27.69 18.24 46.98 2.29
205 206 5.430007 TGGTTGTACTCTTTCGGAAAGAAA 58.570 37.500 27.69 18.66 46.13 2.52
206 207 5.026038 TGGTTGTACTCTTTCGGAAAGAA 57.974 39.130 27.69 15.46 46.13 2.52
207 208 4.675976 TGGTTGTACTCTTTCGGAAAGA 57.324 40.909 26.61 26.61 44.82 2.52
208 209 4.755123 ACATGGTTGTACTCTTTCGGAAAG 59.245 41.667 21.64 21.64 35.53 2.62
209 210 4.710324 ACATGGTTGTACTCTTTCGGAAA 58.290 39.130 2.78 2.78 33.16 3.13
210 211 4.312443 GACATGGTTGTACTCTTTCGGAA 58.688 43.478 0.00 0.00 35.79 4.30
211 212 3.306502 GGACATGGTTGTACTCTTTCGGA 60.307 47.826 0.00 0.00 35.79 4.55
212 213 3.000727 GGACATGGTTGTACTCTTTCGG 58.999 50.000 0.00 0.00 35.79 4.30
213 214 3.000727 GGGACATGGTTGTACTCTTTCG 58.999 50.000 0.00 0.00 36.85 3.46
214 215 4.287766 AGGGACATGGTTGTACTCTTTC 57.712 45.455 0.00 0.00 36.85 2.62
215 216 4.724279 AAGGGACATGGTTGTACTCTTT 57.276 40.909 0.00 0.00 36.85 2.52
216 217 4.724279 AAAGGGACATGGTTGTACTCTT 57.276 40.909 0.00 0.00 36.85 2.85
217 218 4.506802 GGAAAAGGGACATGGTTGTACTCT 60.507 45.833 0.00 0.00 36.85 3.24
218 219 3.756963 GGAAAAGGGACATGGTTGTACTC 59.243 47.826 0.00 0.00 36.85 2.59
219 220 3.499745 GGGAAAAGGGACATGGTTGTACT 60.500 47.826 0.00 0.00 36.85 2.73
220 221 2.823747 GGGAAAAGGGACATGGTTGTAC 59.176 50.000 0.00 0.00 35.79 2.90
221 222 2.225167 GGGGAAAAGGGACATGGTTGTA 60.225 50.000 0.00 0.00 35.79 2.41
222 223 1.482365 GGGGAAAAGGGACATGGTTGT 60.482 52.381 0.00 0.00 39.32 3.32
223 224 1.266178 GGGGAAAAGGGACATGGTTG 58.734 55.000 0.00 0.00 0.00 3.77
224 225 0.863956 TGGGGAAAAGGGACATGGTT 59.136 50.000 0.00 0.00 0.00 3.67
225 226 1.007118 GATGGGGAAAAGGGACATGGT 59.993 52.381 0.00 0.00 0.00 3.55
226 227 1.288932 AGATGGGGAAAAGGGACATGG 59.711 52.381 0.00 0.00 0.00 3.66
227 228 2.834638 AGATGGGGAAAAGGGACATG 57.165 50.000 0.00 0.00 0.00 3.21
228 229 3.852858 AAAGATGGGGAAAAGGGACAT 57.147 42.857 0.00 0.00 0.00 3.06
229 230 3.506398 GAAAAGATGGGGAAAAGGGACA 58.494 45.455 0.00 0.00 0.00 4.02
230 231 2.832129 GGAAAAGATGGGGAAAAGGGAC 59.168 50.000 0.00 0.00 0.00 4.46
231 232 2.225522 GGGAAAAGATGGGGAAAAGGGA 60.226 50.000 0.00 0.00 0.00 4.20
232 233 2.187958 GGGAAAAGATGGGGAAAAGGG 58.812 52.381 0.00 0.00 0.00 3.95
233 234 2.187958 GGGGAAAAGATGGGGAAAAGG 58.812 52.381 0.00 0.00 0.00 3.11
234 235 1.824852 CGGGGAAAAGATGGGGAAAAG 59.175 52.381 0.00 0.00 0.00 2.27
235 236 1.148236 ACGGGGAAAAGATGGGGAAAA 59.852 47.619 0.00 0.00 0.00 2.29
236 237 0.781278 ACGGGGAAAAGATGGGGAAA 59.219 50.000 0.00 0.00 0.00 3.13
237 238 0.039035 CACGGGGAAAAGATGGGGAA 59.961 55.000 0.00 0.00 0.00 3.97
238 239 1.137594 ACACGGGGAAAAGATGGGGA 61.138 55.000 0.00 0.00 0.00 4.81
239 240 0.621609 TACACGGGGAAAAGATGGGG 59.378 55.000 0.00 0.00 0.00 4.96
240 241 2.017113 GCTACACGGGGAAAAGATGGG 61.017 57.143 0.00 0.00 0.00 4.00
241 242 1.379527 GCTACACGGGGAAAAGATGG 58.620 55.000 0.00 0.00 0.00 3.51
242 243 1.339631 TGGCTACACGGGGAAAAGATG 60.340 52.381 0.00 0.00 0.00 2.90
243 244 0.988832 TGGCTACACGGGGAAAAGAT 59.011 50.000 0.00 0.00 0.00 2.40
250 251 1.983119 ATCCACATGGCTACACGGGG 61.983 60.000 0.00 0.00 34.44 5.73
252 253 1.299541 GAATCCACATGGCTACACGG 58.700 55.000 0.00 0.00 34.44 4.94
274 275 6.327887 GTGGAAAAGGAGAGGGATAATAGTCT 59.672 42.308 0.00 0.00 0.00 3.24
278 279 5.607171 GGAGTGGAAAAGGAGAGGGATAATA 59.393 44.000 0.00 0.00 0.00 0.98
323 324 5.172934 TCCGTTGGTGATGATTTGTACTAC 58.827 41.667 0.00 0.00 0.00 2.73
324 325 5.408880 TCCGTTGGTGATGATTTGTACTA 57.591 39.130 0.00 0.00 0.00 1.82
325 326 4.253685 CTCCGTTGGTGATGATTTGTACT 58.746 43.478 0.00 0.00 0.00 2.73
394 395 0.621571 TGGAGGAGATTGGAGGGGTG 60.622 60.000 0.00 0.00 0.00 4.61
422 423 4.787280 AGGAGCAGGGGACGGGAG 62.787 72.222 0.00 0.00 0.00 4.30
454 455 2.033049 GCAACAGGATCTGTGATGATGC 59.967 50.000 1.01 3.99 44.62 3.91
476 477 3.003480 GGGAGAAGAGTATTGTGTGTGC 58.997 50.000 0.00 0.00 0.00 4.57
481 494 5.355350 GGTCAATTGGGAGAAGAGTATTGTG 59.645 44.000 5.42 0.00 0.00 3.33
490 503 7.915930 AGATAGATATGGTCAATTGGGAGAAG 58.084 38.462 5.42 0.00 0.00 2.85
564 579 2.356313 ACGCAGACGCAGGTGAAG 60.356 61.111 0.00 0.00 45.53 3.02
637 652 0.670162 TGCTTGGCTGCTGTCTTTTC 59.330 50.000 0.00 0.00 0.00 2.29
652 667 4.982701 AGCGGGCTGGCTTTGCTT 62.983 61.111 9.52 0.00 41.39 3.91
992 1009 3.091318 TCCTACCGCTAGGAGTTCG 57.909 57.895 2.14 0.00 43.35 3.95
1028 1045 2.803155 TACAAGCGCAAGGAGCCAGG 62.803 60.000 11.47 0.00 41.38 4.45
1074 1091 4.547367 GGCGAGGGGGATGAACCG 62.547 72.222 0.00 0.00 40.11 4.44
1236 1271 4.735599 ACCCGGAACCTCCCCCTC 62.736 72.222 0.73 0.00 31.13 4.30
1237 1272 4.735599 GACCCGGAACCTCCCCCT 62.736 72.222 0.73 0.00 31.13 4.79
1288 1323 2.279252 CCCGTTGGCCGATACGAG 60.279 66.667 21.85 8.82 40.03 4.18
1379 1414 1.903404 CAGGAACCACACTTGCCCC 60.903 63.158 0.00 0.00 0.00 5.80
1382 1417 0.465460 TCACCAGGAACCACACTTGC 60.465 55.000 0.00 0.00 0.00 4.01
1500 1536 3.939939 TTGAGCGCCCACTGCAGA 61.940 61.111 23.35 0.00 41.33 4.26
1604 1640 2.857748 CAAGCAAAGGTTTTTGACGGAC 59.142 45.455 4.33 0.00 45.21 4.79
1613 1649 0.108424 TGCAACGCAAGCAAAGGTTT 60.108 45.000 0.00 0.00 39.39 3.27
1639 1675 0.744874 CAGGGAAATGCTGCCATGAG 59.255 55.000 0.00 0.00 38.16 2.90
1646 1682 1.651240 CGAGGCACAGGGAAATGCTG 61.651 60.000 0.00 0.00 41.74 4.41
1656 1692 0.173481 TCCTTCGATTCGAGGCACAG 59.827 55.000 12.28 5.35 37.14 3.66
1661 1697 1.066303 CAGGTCTCCTTCGATTCGAGG 59.934 57.143 10.92 10.92 37.14 4.63
1662 1698 1.746220 ACAGGTCTCCTTCGATTCGAG 59.254 52.381 8.98 4.02 37.14 4.04
1664 1700 1.914634 CACAGGTCTCCTTCGATTCG 58.085 55.000 0.00 0.00 0.00 3.34
1953 2000 0.949105 AGTACTTCTTGTTGGCGCCG 60.949 55.000 23.90 6.99 0.00 6.46
1992 2039 0.102120 GAGGTGAGAGGTGAGCATCG 59.898 60.000 0.00 0.00 38.61 3.84
2005 2055 4.025858 GCTGCTGCTGGGAGGTGA 62.026 66.667 8.53 0.00 33.77 4.02
2008 2058 2.044252 ATTGCTGCTGCTGGGAGG 60.044 61.111 17.00 0.00 40.48 4.30
2010 2060 0.963856 CAAGATTGCTGCTGCTGGGA 60.964 55.000 17.00 0.99 40.48 4.37
2011 2061 1.511305 CAAGATTGCTGCTGCTGGG 59.489 57.895 17.00 0.00 40.48 4.45
2012 2062 1.511305 CCAAGATTGCTGCTGCTGG 59.489 57.895 17.00 11.32 40.48 4.85
2013 2063 1.153823 GCCAAGATTGCTGCTGCTG 60.154 57.895 17.00 6.00 40.48 4.41
2014 2064 2.697761 CGCCAAGATTGCTGCTGCT 61.698 57.895 17.00 0.00 40.48 4.24
2015 2065 2.202570 CGCCAAGATTGCTGCTGC 60.203 61.111 8.89 8.89 40.20 5.25
2063 2113 5.502153 TTACTTTTGGTGTGTGCGTTAAT 57.498 34.783 0.00 0.00 0.00 1.40
2092 2142 3.935203 CTGATCGAGCACACAGGTAAAAT 59.065 43.478 0.00 0.00 0.00 1.82
2099 2149 1.357258 GCCACTGATCGAGCACACAG 61.357 60.000 0.00 2.21 36.58 3.66
2100 2150 1.374631 GCCACTGATCGAGCACACA 60.375 57.895 0.00 0.00 0.00 3.72
2250 2300 1.933181 TCAATTCGCAGCTAACATCGG 59.067 47.619 0.00 0.00 0.00 4.18
2300 2350 0.450184 CCACCCAACGCTTTAATCCG 59.550 55.000 0.00 0.00 0.00 4.18
2336 2386 2.438075 CTTGGGCTCTGCTCCTGC 60.438 66.667 0.00 0.00 40.20 4.85
2389 2439 0.256752 TGATCACCTTGGGCTCCATG 59.743 55.000 0.00 0.00 31.53 3.66
2614 2664 1.013005 TCGTCTCGTGGTCTCTCGTC 61.013 60.000 0.00 0.00 0.00 4.20
2616 2666 1.420702 GTCGTCTCGTGGTCTCTCG 59.579 63.158 0.00 0.00 0.00 4.04
2618 2668 2.678956 GCGTCGTCTCGTGGTCTCT 61.679 63.158 0.00 0.00 0.00 3.10
2620 2670 4.086178 CGCGTCGTCTCGTGGTCT 62.086 66.667 0.00 0.00 37.62 3.85
3001 3051 1.076705 GATGAGGTTGGGGCCTTCC 60.077 63.158 0.84 3.66 39.34 3.46
3074 3124 3.964875 GGTGTGCAAGCGTGGTGG 61.965 66.667 0.79 0.00 0.00 4.61
3088 3138 1.717645 GTAGCGTAGTTTGTCGTGGTG 59.282 52.381 0.00 0.00 0.00 4.17
3090 3140 1.983605 CAGTAGCGTAGTTTGTCGTGG 59.016 52.381 0.00 0.00 0.00 4.94
3091 3141 2.658285 ACAGTAGCGTAGTTTGTCGTG 58.342 47.619 0.00 0.00 0.00 4.35
3098 3148 4.630069 CAGCCAAAATACAGTAGCGTAGTT 59.370 41.667 0.00 0.00 31.41 2.24
3099 3149 4.181578 CAGCCAAAATACAGTAGCGTAGT 58.818 43.478 0.00 0.00 0.00 2.73
3102 3152 1.737793 GCAGCCAAAATACAGTAGCGT 59.262 47.619 0.00 0.00 0.00 5.07
3103 3153 1.267532 CGCAGCCAAAATACAGTAGCG 60.268 52.381 0.00 0.00 36.62 4.26
3104 3154 1.737793 ACGCAGCCAAAATACAGTAGC 59.262 47.619 0.00 0.00 0.00 3.58
3105 3155 2.029244 CGACGCAGCCAAAATACAGTAG 59.971 50.000 0.00 0.00 0.00 2.57
3106 3156 1.996898 CGACGCAGCCAAAATACAGTA 59.003 47.619 0.00 0.00 0.00 2.74
3107 3157 0.796312 CGACGCAGCCAAAATACAGT 59.204 50.000 0.00 0.00 0.00 3.55
3108 3158 1.075542 TCGACGCAGCCAAAATACAG 58.924 50.000 0.00 0.00 0.00 2.74
3109 3159 1.396648 CATCGACGCAGCCAAAATACA 59.603 47.619 0.00 0.00 0.00 2.29
3110 3160 1.268032 CCATCGACGCAGCCAAAATAC 60.268 52.381 0.00 0.00 0.00 1.89
3111 3161 1.013596 CCATCGACGCAGCCAAAATA 58.986 50.000 0.00 0.00 0.00 1.40
3112 3162 0.960364 ACCATCGACGCAGCCAAAAT 60.960 50.000 0.00 0.00 0.00 1.82
3127 3180 1.221840 CAAGGCCGCTGTAGACCAT 59.778 57.895 0.00 0.00 0.00 3.55
3142 3195 0.527113 TGCGAAATCACATGCCCAAG 59.473 50.000 0.00 0.00 0.00 3.61
3143 3196 0.527113 CTGCGAAATCACATGCCCAA 59.473 50.000 0.00 0.00 0.00 4.12
3164 3217 0.458716 CCGGCTTCGACCTCTTCTTC 60.459 60.000 0.00 0.00 35.61 2.87
3165 3218 1.592223 CCGGCTTCGACCTCTTCTT 59.408 57.895 0.00 0.00 35.61 2.52
3166 3219 3.007973 GCCGGCTTCGACCTCTTCT 62.008 63.158 22.15 0.00 35.61 2.85
3233 3286 1.153745 GGAGTGCACGTAGCTCAGG 60.154 63.158 12.01 0.00 45.94 3.86
3353 3406 9.515020 CAAAACACAGACAAACAAACTGTATAT 57.485 29.630 0.00 0.00 41.93 0.86
3354 3407 8.516234 ACAAAACACAGACAAACAAACTGTATA 58.484 29.630 0.00 0.00 41.93 1.47
3357 3410 5.596845 ACAAAACACAGACAAACAAACTGT 58.403 33.333 0.00 0.00 44.15 3.55
3391 3444 3.050619 CGGTACACAGTTCAGAGTTCAC 58.949 50.000 0.00 0.00 0.00 3.18
3414 3474 1.234615 AAATCGGACAACTGCCACCG 61.235 55.000 0.00 0.00 45.61 4.94
3497 3557 4.734917 ACAAGAAGAAGACGTATCCGAAG 58.265 43.478 0.00 0.00 37.88 3.79
3503 3563 6.016527 TGTCTGTGTACAAGAAGAAGACGTAT 60.017 38.462 0.00 0.00 36.26 3.06
3521 3581 0.110147 GAGACTCGTCCGTGTCTGTG 60.110 60.000 23.93 0.00 45.34 3.66
3522 3582 0.250381 AGAGACTCGTCCGTGTCTGT 60.250 55.000 23.93 18.73 45.34 3.41
3523 3583 0.875728 AAGAGACTCGTCCGTGTCTG 59.124 55.000 23.93 0.00 45.34 3.51
3525 3585 1.725292 CGAAAGAGACTCGTCCGTGTC 60.725 57.143 12.51 12.51 38.47 3.67
3527 3587 0.454620 CCGAAAGAGACTCGTCCGTG 60.455 60.000 0.00 0.00 34.46 4.94
3531 3591 1.805345 TCAGACCGAAAGAGACTCGTC 59.195 52.381 0.00 0.00 34.46 4.20
3545 3649 4.681978 ACGGCGCCACTTCAGACC 62.682 66.667 28.98 0.00 0.00 3.85
3566 3674 2.683362 GGATTTTGATCTTCGTCACCCC 59.317 50.000 0.00 0.00 0.00 4.95
3591 3699 4.587189 GCTAGGTACCTGCGCCCG 62.587 72.222 25.33 6.72 0.00 6.13
3606 3714 1.141881 CATGAAGTACTCCGGCGCT 59.858 57.895 7.64 0.00 0.00 5.92
3723 3831 1.152546 ACTTTGGTGGTGGCCCTTC 60.153 57.895 0.00 0.00 0.00 3.46
3766 3874 2.077687 ATGTGGGCTTGATTGGGATC 57.922 50.000 0.00 0.00 0.00 3.36
3775 3883 1.271871 TGAGGTGGTTATGTGGGCTTG 60.272 52.381 0.00 0.00 0.00 4.01
3778 3886 0.328258 AGTGAGGTGGTTATGTGGGC 59.672 55.000 0.00 0.00 0.00 5.36
3877 3990 2.052237 CAACCGCGTCAGCACAAC 60.052 61.111 4.92 0.00 45.49 3.32
4048 4163 1.982395 CTGCGATATCGGGGGCCTA 60.982 63.158 25.51 0.00 40.23 3.93
4083 4198 3.374042 AGAAGAGCCTGCTACTCACTA 57.626 47.619 0.00 0.00 36.58 2.74
4084 4199 2.230130 AGAAGAGCCTGCTACTCACT 57.770 50.000 0.00 1.39 36.58 3.41
4085 4200 2.232452 TGAAGAAGAGCCTGCTACTCAC 59.768 50.000 0.00 0.00 36.58 3.51
4132 4247 3.304911 AGTGCCTGCTACTCAGATAGA 57.695 47.619 0.00 0.00 45.72 1.98
4133 4248 3.382865 TGAAGTGCCTGCTACTCAGATAG 59.617 47.826 0.00 0.00 45.72 2.08
4135 4250 2.182827 TGAAGTGCCTGCTACTCAGAT 58.817 47.619 0.00 0.00 45.72 2.90
4137 4252 2.168106 AGATGAAGTGCCTGCTACTCAG 59.832 50.000 0.00 0.00 42.49 3.35
4141 4256 2.935201 CTGAAGATGAAGTGCCTGCTAC 59.065 50.000 0.00 0.00 0.00 3.58
4142 4257 2.833943 TCTGAAGATGAAGTGCCTGCTA 59.166 45.455 0.00 0.00 0.00 3.49
4143 4258 1.627329 TCTGAAGATGAAGTGCCTGCT 59.373 47.619 0.00 0.00 0.00 4.24
4146 4261 3.055240 CCTCTTCTGAAGATGAAGTGCCT 60.055 47.826 19.61 0.00 41.04 4.75
4147 4262 3.055530 TCCTCTTCTGAAGATGAAGTGCC 60.056 47.826 19.61 0.00 41.04 5.01
4148 4263 4.199432 TCCTCTTCTGAAGATGAAGTGC 57.801 45.455 19.61 0.00 41.04 4.40
4187 4302 1.730547 GCAACACACAGCAATCGGC 60.731 57.895 0.00 0.00 45.30 5.54
4188 4303 0.386352 CTGCAACACACAGCAATCGG 60.386 55.000 0.00 0.00 40.73 4.18
4189 4304 0.587768 TCTGCAACACACAGCAATCG 59.412 50.000 0.00 0.00 40.73 3.34
4190 4305 3.057736 AGAATCTGCAACACACAGCAATC 60.058 43.478 0.00 0.00 40.73 2.67
4191 4306 2.889045 AGAATCTGCAACACACAGCAAT 59.111 40.909 0.00 0.00 40.73 3.56
4192 4307 2.033675 CAGAATCTGCAACACACAGCAA 59.966 45.455 0.00 0.00 40.73 3.91
4193 4308 1.605232 CAGAATCTGCAACACACAGCA 59.395 47.619 0.00 0.00 39.25 4.41
4194 4309 1.875514 TCAGAATCTGCAACACACAGC 59.124 47.619 5.18 0.00 35.04 4.40
4195 4310 2.095869 GCTCAGAATCTGCAACACACAG 60.096 50.000 5.18 0.00 36.44 3.66
4196 4311 1.875514 GCTCAGAATCTGCAACACACA 59.124 47.619 5.18 0.00 0.00 3.72
4197 4312 1.875514 TGCTCAGAATCTGCAACACAC 59.124 47.619 5.18 0.00 33.48 3.82
4198 4313 2.259266 TGCTCAGAATCTGCAACACA 57.741 45.000 5.18 0.00 33.48 3.72
4199 4314 3.937706 AGTATGCTCAGAATCTGCAACAC 59.062 43.478 5.18 4.35 40.24 3.32
4200 4315 4.212143 AGTATGCTCAGAATCTGCAACA 57.788 40.909 5.18 3.90 40.24 3.33
4203 4318 3.632145 TCGTAGTATGCTCAGAATCTGCA 59.368 43.478 5.18 1.12 41.13 4.41
4210 4325 3.840124 TCTCCTCGTAGTATGCTCAGA 57.160 47.619 0.00 0.00 0.00 3.27
4225 4340 2.400158 CGTCGCGTCCTCTTCTCCT 61.400 63.158 5.77 0.00 0.00 3.69
4423 4538 3.012518 CAAAGGTCAATCGAAGCTGGAT 58.987 45.455 0.00 0.00 0.00 3.41
4569 4685 4.234550 TCTCTGTGGGTGGCATATCTATT 58.765 43.478 0.00 0.00 0.00 1.73
4616 4732 2.952714 AGGCACACTGAAAGGCATC 58.047 52.632 0.00 0.00 39.30 3.91
5003 5186 1.683385 GGCAACCAAGGGCTATTCATC 59.317 52.381 0.00 0.00 0.00 2.92
5036 5219 3.451894 GTTTGGCGCCCATGGAGG 61.452 66.667 26.77 5.38 31.53 4.30
5147 5330 1.064389 GGAATCCACCTTCCTTGGAGG 60.064 57.143 0.00 0.00 46.46 4.30
5178 5361 5.948742 AAGAGAGGAAATTCCGAGATCTT 57.051 39.130 6.35 11.24 42.75 2.40
5190 5373 6.556874 AGAAGGAAGAGAAGAAAGAGAGGAAA 59.443 38.462 0.00 0.00 0.00 3.13
5361 5553 2.637025 CCCGTTCTGCACAAACCG 59.363 61.111 2.46 0.00 0.00 4.44
5431 5623 0.031178 CAGAGTTTGCCTGTGTTGCC 59.969 55.000 0.00 0.00 29.96 4.52
5439 5631 0.689623 CTCCTCCACAGAGTTTGCCT 59.310 55.000 0.00 0.00 38.58 4.75
5507 5699 2.048603 ATTCCTCCTGCAAAGGCGC 61.049 57.895 0.00 0.00 45.35 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.