Multiple sequence alignment - TraesCS4A01G072200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G072200 chr4A 100.000 3992 0 0 1 3992 69978559 69982550 0.000000e+00 7372.0
1 TraesCS4A01G072200 chr4A 93.220 118 8 0 659 776 580709457 580709340 1.470000e-39 174.0
2 TraesCS4A01G072200 chr4A 95.000 60 3 0 3283 3342 4151959 4152018 1.180000e-15 95.3
3 TraesCS4A01G072200 chr4B 96.259 2566 85 7 783 3341 477144635 477147196 0.000000e+00 4196.0
4 TraesCS4A01G072200 chr4B 96.209 633 18 4 3342 3974 477147239 477147865 0.000000e+00 1031.0
5 TraesCS4A01G072200 chr4B 83.584 664 73 16 1 636 477143928 477144583 1.240000e-164 590.0
6 TraesCS4A01G072200 chr4D 97.024 2352 66 3 947 3296 388821182 388823531 0.000000e+00 3952.0
7 TraesCS4A01G072200 chr4D 87.902 653 67 6 3346 3992 388823530 388824176 0.000000e+00 758.0
8 TraesCS4A01G072200 chr4D 93.701 127 8 0 783 909 388821052 388821178 1.460000e-44 191.0
9 TraesCS4A01G072200 chr3A 91.045 134 11 1 649 782 699764880 699765012 3.170000e-41 180.0
10 TraesCS4A01G072200 chr7A 93.277 119 8 0 661 779 85417369 85417251 4.100000e-40 176.0
11 TraesCS4A01G072200 chr7A 91.597 119 10 0 658 776 481587245 481587363 8.880000e-37 165.0
12 TraesCS4A01G072200 chr5B 93.162 117 8 0 661 777 711355444 711355328 5.300000e-39 172.0
13 TraesCS4A01G072200 chr5B 93.103 116 8 0 661 776 659171598 659171483 1.910000e-38 171.0
14 TraesCS4A01G072200 chr5B 93.651 63 3 1 3281 3342 339530862 339530800 4.250000e-15 93.5
15 TraesCS4A01G072200 chr5A 91.736 121 10 0 661 781 513817952 513818072 6.860000e-38 169.0
16 TraesCS4A01G072200 chr2B 87.586 145 16 2 633 776 148404447 148404590 2.470000e-37 167.0
17 TraesCS4A01G072200 chr2B 98.214 56 1 0 3287 3342 751263567 751263622 9.130000e-17 99.0
18 TraesCS4A01G072200 chr2B 95.082 61 1 2 3281 3341 206371289 206371231 1.180000e-15 95.3
19 TraesCS4A01G072200 chr7B 91.597 119 9 1 667 784 539687388 539687270 3.190000e-36 163.0
20 TraesCS4A01G072200 chr7B 96.721 61 1 1 3282 3342 413721528 413721587 2.540000e-17 100.0
21 TraesCS4A01G072200 chr7D 100.000 57 0 0 3286 3342 122684911 122684855 5.460000e-19 106.0
22 TraesCS4A01G072200 chr1A 96.610 59 2 0 3284 3342 228076869 228076811 9.130000e-17 99.0
23 TraesCS4A01G072200 chr1B 92.424 66 3 2 3288 3352 632658742 632658806 4.250000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G072200 chr4A 69978559 69982550 3991 False 7372.000000 7372 100.000000 1 3992 1 chr4A.!!$F2 3991
1 TraesCS4A01G072200 chr4B 477143928 477147865 3937 False 1939.000000 4196 92.017333 1 3974 3 chr4B.!!$F1 3973
2 TraesCS4A01G072200 chr4D 388821052 388824176 3124 False 1633.666667 3952 92.875667 783 3992 3 chr4D.!!$F1 3209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 815 0.033796 TCCGGACGGAGGAAGTATGT 60.034 55.0 9.76 0.0 39.76 2.29 F
779 816 0.102481 CCGGACGGAGGAAGTATGTG 59.898 60.0 4.40 0.0 37.50 3.21 F
1326 1371 0.103937 CACTCATCCTCTTCGCCTCC 59.896 60.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1959 1.336795 CGTTTCCCCAGTGAAAATGCC 60.337 52.381 0.0 0.0 36.09 4.40 R
2313 2358 1.554583 TTATACACCCAGCACGCCCA 61.555 55.000 0.0 0.0 0.00 5.36 R
3183 3228 3.226777 CTCCCTGGATGAGTCTTCGTAT 58.773 50.000 0.0 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.421888 CGAAAAGTGGCTCGACAATTTTG 59.578 43.478 14.72 5.00 45.22 2.44
34 35 4.606961 GAAAAGTGGCTCGACAATTTTGA 58.393 39.130 14.72 0.00 45.22 2.69
35 36 3.904136 AAGTGGCTCGACAATTTTGAG 57.096 42.857 0.00 0.00 38.67 3.02
36 37 3.126001 AGTGGCTCGACAATTTTGAGA 57.874 42.857 0.00 0.00 37.93 3.27
37 38 3.070018 AGTGGCTCGACAATTTTGAGAG 58.930 45.455 12.61 12.61 37.93 3.20
38 39 2.808543 GTGGCTCGACAATTTTGAGAGT 59.191 45.455 15.87 0.00 37.93 3.24
39 40 3.067106 TGGCTCGACAATTTTGAGAGTC 58.933 45.455 13.79 13.79 37.93 3.36
41 42 2.092838 GCTCGACAATTTTGAGAGTCCG 59.907 50.000 15.87 0.00 37.93 4.79
67 69 2.576053 CGCTCGCACGTACGACAT 60.576 61.111 24.41 0.00 37.09 3.06
83 85 1.143684 GACATGGTGGCATGGAGGTAT 59.856 52.381 0.00 0.00 36.91 2.73
92 94 2.520536 ATGGAGGTATGGCCGGCTC 61.521 63.158 28.56 17.27 43.70 4.70
93 95 2.844839 GGAGGTATGGCCGGCTCT 60.845 66.667 28.56 16.41 43.70 4.09
156 167 1.382695 ACCCCTCCTATGTGGACCG 60.383 63.158 0.00 0.00 40.56 4.79
198 209 1.026718 AAACCGCCTAGCTGATGTGC 61.027 55.000 0.00 0.00 0.00 4.57
200 211 1.450134 CCGCCTAGCTGATGTGCAA 60.450 57.895 0.00 0.00 34.99 4.08
214 225 1.227823 TGCAACACACCTTCGAGGG 60.228 57.895 12.81 12.81 40.58 4.30
221 232 0.614134 ACACCTTCGAGGGTAGGGAC 60.614 60.000 20.03 0.00 40.58 4.46
224 235 3.122250 CTTCGAGGGTAGGGACGCG 62.122 68.421 3.53 3.53 43.15 6.01
230 241 0.685458 AGGGTAGGGACGCGTTGTAT 60.685 55.000 15.53 2.49 43.15 2.29
244 255 3.841372 GCGTTGTATATGCAGAAGTTCGC 60.841 47.826 11.25 11.25 38.70 4.70
245 256 3.551890 CGTTGTATATGCAGAAGTTCGCT 59.448 43.478 16.71 8.22 0.00 4.93
261 272 2.873525 GCTGAGGCCTATCCGGACC 61.874 68.421 6.12 2.72 44.54 4.46
262 273 1.152440 CTGAGGCCTATCCGGACCT 60.152 63.158 6.12 9.12 44.54 3.85
263 274 1.152525 TGAGGCCTATCCGGACCTC 60.153 63.158 25.11 25.11 44.54 3.85
264 275 1.152525 GAGGCCTATCCGGACCTCA 60.153 63.158 26.30 5.52 44.54 3.86
265 276 0.543174 GAGGCCTATCCGGACCTCAT 60.543 60.000 26.30 6.84 44.54 2.90
269 280 1.290324 CTATCCGGACCTCATGGCG 59.710 63.158 6.12 0.00 36.63 5.69
289 300 3.105659 GGAGCTTGCATTCTCCGC 58.894 61.111 16.10 0.91 39.43 5.54
290 301 2.476320 GGAGCTTGCATTCTCCGCC 61.476 63.158 16.10 0.00 39.43 6.13
304 315 2.097038 CCGCCGAGAAGACAAGCAG 61.097 63.158 0.00 0.00 0.00 4.24
305 316 1.373497 CGCCGAGAAGACAAGCAGT 60.373 57.895 0.00 0.00 0.00 4.40
309 320 0.788995 CGAGAAGACAAGCAGTGCAG 59.211 55.000 19.20 11.98 0.00 4.41
337 348 4.477975 GACGAGGAGCACCGTCCG 62.478 72.222 0.00 10.00 46.54 4.79
344 355 4.680537 AGCACCGTCCGAGGGTCT 62.681 66.667 9.89 7.84 33.44 3.85
350 361 3.371063 GTCCGAGGGTCTGCGTCA 61.371 66.667 0.00 0.00 0.00 4.35
353 364 2.636412 CCGAGGGTCTGCGTCAAGA 61.636 63.158 0.00 0.00 0.00 3.02
376 387 4.780815 TCGATGATTTATTCCACCAGCTT 58.219 39.130 0.00 0.00 0.00 3.74
388 399 1.003580 CACCAGCTTGACAGGTATGGT 59.996 52.381 9.76 9.76 35.63 3.55
389 400 1.705186 ACCAGCTTGACAGGTATGGTT 59.295 47.619 9.76 0.00 36.16 3.67
395 406 0.611200 TGACAGGTATGGTTGGGACG 59.389 55.000 0.00 0.00 0.00 4.79
401 413 0.464452 GTATGGTTGGGACGAGGAGG 59.536 60.000 0.00 0.00 0.00 4.30
437 449 1.252215 TACCGGCAATGACCACGAGA 61.252 55.000 0.00 0.00 0.00 4.04
439 451 2.444624 CGGCAATGACCACGAGACG 61.445 63.158 0.00 0.00 0.00 4.18
446 458 4.296729 ACCACGAGACGGGTCCCT 62.297 66.667 6.29 0.00 29.34 4.20
489 512 5.047306 ACATCGACTTTGATGAGGAAGTACA 60.047 40.000 12.61 0.00 46.98 2.90
505 528 5.467063 GGAAGTACAGTGAAAAGAAGTGAGG 59.533 44.000 0.00 0.00 0.00 3.86
515 538 6.864165 GTGAAAAGAAGTGAGGAGTAGTAGTG 59.136 42.308 0.00 0.00 0.00 2.74
516 539 6.550108 TGAAAAGAAGTGAGGAGTAGTAGTGT 59.450 38.462 0.00 0.00 0.00 3.55
533 556 4.998671 AGTGTGATGATCTAGTGTGGAG 57.001 45.455 0.00 0.00 0.00 3.86
534 557 3.703556 AGTGTGATGATCTAGTGTGGAGG 59.296 47.826 0.00 0.00 0.00 4.30
559 583 4.813809 AGGAGGAGTGTGATGATCTATGT 58.186 43.478 0.00 0.00 0.00 2.29
562 586 5.069648 GGAGGAGTGTGATGATCTATGTCAA 59.930 44.000 0.00 0.00 0.00 3.18
591 615 7.269316 TGTTTAATTATCTAGTGTGATGCCGA 58.731 34.615 0.00 0.00 0.00 5.54
595 619 7.807977 AATTATCTAGTGTGATGCCGATTTT 57.192 32.000 0.00 0.00 0.00 1.82
596 620 6.603237 TTATCTAGTGTGATGCCGATTTTG 57.397 37.500 0.00 0.00 0.00 2.44
599 623 3.287312 AGTGTGATGCCGATTTTGTTG 57.713 42.857 0.00 0.00 0.00 3.33
600 624 2.884012 AGTGTGATGCCGATTTTGTTGA 59.116 40.909 0.00 0.00 0.00 3.18
601 625 3.317711 AGTGTGATGCCGATTTTGTTGAA 59.682 39.130 0.00 0.00 0.00 2.69
602 626 4.022068 AGTGTGATGCCGATTTTGTTGAAT 60.022 37.500 0.00 0.00 0.00 2.57
604 628 5.286082 GTGTGATGCCGATTTTGTTGAATAC 59.714 40.000 0.00 0.00 0.00 1.89
605 629 5.182950 TGTGATGCCGATTTTGTTGAATACT 59.817 36.000 0.00 0.00 0.00 2.12
607 636 6.251376 GTGATGCCGATTTTGTTGAATACTTC 59.749 38.462 0.00 0.00 0.00 3.01
610 639 7.441890 TGCCGATTTTGTTGAATACTTCTTA 57.558 32.000 0.00 0.00 0.00 2.10
652 689 8.849168 TCAGAATATGTGTTCATGTTTGAAAGT 58.151 29.630 0.00 0.00 43.29 2.66
656 693 9.814899 AATATGTGTTCATGTTTGAAAGTTTCA 57.185 25.926 14.35 14.35 43.29 2.69
657 694 7.760131 ATGTGTTCATGTTTGAAAGTTTCAG 57.240 32.000 17.36 6.89 43.29 3.02
660 697 8.034215 TGTGTTCATGTTTGAAAGTTTCAGAAT 58.966 29.630 17.36 10.25 43.29 2.40
663 700 9.736023 GTTCATGTTTGAAAGTTTCAGAATACT 57.264 29.630 17.36 1.04 43.29 2.12
665 702 9.342308 TCATGTTTGAAAGTTTCAGAATACTCT 57.658 29.630 17.36 5.65 41.38 3.24
666 703 9.604626 CATGTTTGAAAGTTTCAGAATACTCTC 57.395 33.333 17.36 1.87 41.38 3.20
667 704 8.964476 TGTTTGAAAGTTTCAGAATACTCTCT 57.036 30.769 17.36 0.00 41.38 3.10
668 705 9.046296 TGTTTGAAAGTTTCAGAATACTCTCTC 57.954 33.333 17.36 0.60 41.38 3.20
669 706 8.499967 GTTTGAAAGTTTCAGAATACTCTCTCC 58.500 37.037 17.36 0.00 41.38 3.71
670 707 6.390721 TGAAAGTTTCAGAATACTCTCTCCG 58.609 40.000 14.35 0.00 34.08 4.63
672 709 5.986501 AGTTTCAGAATACTCTCTCCGTT 57.013 39.130 0.00 0.00 0.00 4.44
675 712 5.568685 TTCAGAATACTCTCTCCGTTCAG 57.431 43.478 0.00 0.00 0.00 3.02
676 713 4.844884 TCAGAATACTCTCTCCGTTCAGA 58.155 43.478 0.00 0.00 0.00 3.27
677 714 5.254115 TCAGAATACTCTCTCCGTTCAGAA 58.746 41.667 0.00 0.00 0.00 3.02
678 715 5.710567 TCAGAATACTCTCTCCGTTCAGAAA 59.289 40.000 0.00 0.00 0.00 2.52
679 716 6.378564 TCAGAATACTCTCTCCGTTCAGAAAT 59.621 38.462 0.00 0.00 0.00 2.17
680 717 7.556635 TCAGAATACTCTCTCCGTTCAGAAATA 59.443 37.037 0.00 0.00 0.00 1.40
681 718 7.646130 CAGAATACTCTCTCCGTTCAGAAATAC 59.354 40.741 0.00 0.00 0.00 1.89
682 719 7.558444 AGAATACTCTCTCCGTTCAGAAATACT 59.442 37.037 0.00 0.00 0.00 2.12
683 720 5.986501 ACTCTCTCCGTTCAGAAATACTT 57.013 39.130 0.00 0.00 0.00 2.24
684 721 5.715070 ACTCTCTCCGTTCAGAAATACTTG 58.285 41.667 0.00 0.00 0.00 3.16
685 722 5.244178 ACTCTCTCCGTTCAGAAATACTTGT 59.756 40.000 0.00 0.00 0.00 3.16
686 723 5.710984 TCTCTCCGTTCAGAAATACTTGTC 58.289 41.667 0.00 0.00 0.00 3.18
687 724 4.817517 TCTCCGTTCAGAAATACTTGTCC 58.182 43.478 0.00 0.00 0.00 4.02
688 725 4.527038 TCTCCGTTCAGAAATACTTGTCCT 59.473 41.667 0.00 0.00 0.00 3.85
689 726 4.817517 TCCGTTCAGAAATACTTGTCCTC 58.182 43.478 0.00 0.00 0.00 3.71
690 727 3.612860 CCGTTCAGAAATACTTGTCCTCG 59.387 47.826 0.00 0.00 0.00 4.63
691 728 4.482386 CGTTCAGAAATACTTGTCCTCGA 58.518 43.478 0.00 0.00 0.00 4.04
692 729 4.921515 CGTTCAGAAATACTTGTCCTCGAA 59.078 41.667 0.00 0.00 0.00 3.71
693 730 5.404366 CGTTCAGAAATACTTGTCCTCGAAA 59.596 40.000 0.00 0.00 0.00 3.46
694 731 6.090898 CGTTCAGAAATACTTGTCCTCGAAAT 59.909 38.462 0.00 0.00 0.00 2.17
695 732 6.968131 TCAGAAATACTTGTCCTCGAAATG 57.032 37.500 0.00 0.00 0.00 2.32
696 733 5.874810 TCAGAAATACTTGTCCTCGAAATGG 59.125 40.000 0.00 0.00 0.00 3.16
697 734 5.874810 CAGAAATACTTGTCCTCGAAATGGA 59.125 40.000 0.00 0.00 0.00 3.41
698 735 6.540189 CAGAAATACTTGTCCTCGAAATGGAT 59.460 38.462 0.00 0.00 35.87 3.41
699 736 7.710907 CAGAAATACTTGTCCTCGAAATGGATA 59.289 37.037 0.00 0.00 35.87 2.59
700 737 8.265055 AGAAATACTTGTCCTCGAAATGGATAA 58.735 33.333 0.00 0.00 35.87 1.75
701 738 8.801882 AAATACTTGTCCTCGAAATGGATAAA 57.198 30.769 3.54 0.00 34.98 1.40
702 739 8.801882 AATACTTGTCCTCGAAATGGATAAAA 57.198 30.769 3.54 0.00 34.98 1.52
703 740 8.980481 ATACTTGTCCTCGAAATGGATAAAAT 57.020 30.769 3.54 0.00 34.98 1.82
705 742 8.438676 ACTTGTCCTCGAAATGGATAAAATAG 57.561 34.615 3.54 0.00 34.98 1.73
706 743 8.265055 ACTTGTCCTCGAAATGGATAAAATAGA 58.735 33.333 3.54 0.00 34.98 1.98
707 744 9.277783 CTTGTCCTCGAAATGGATAAAATAGAT 57.722 33.333 3.54 0.00 34.98 1.98
708 745 8.607441 TGTCCTCGAAATGGATAAAATAGATG 57.393 34.615 0.00 0.00 35.87 2.90
709 746 8.210946 TGTCCTCGAAATGGATAAAATAGATGT 58.789 33.333 0.00 0.00 35.87 3.06
710 747 9.706691 GTCCTCGAAATGGATAAAATAGATGTA 57.293 33.333 0.00 0.00 35.87 2.29
749 786 9.799106 ATAAGTCCAGATACAATTATTTGGAGG 57.201 33.333 4.56 0.00 45.36 4.30
750 787 7.451731 AGTCCAGATACAATTATTTGGAGGA 57.548 36.000 4.56 0.00 45.36 3.71
751 788 7.283329 AGTCCAGATACAATTATTTGGAGGAC 58.717 38.462 9.78 9.78 45.36 3.85
752 789 7.054124 GTCCAGATACAATTATTTGGAGGACA 58.946 38.462 11.74 0.00 45.36 4.02
753 790 7.556275 GTCCAGATACAATTATTTGGAGGACAA 59.444 37.037 11.74 0.00 45.36 3.18
754 791 7.775093 TCCAGATACAATTATTTGGAGGACAAG 59.225 37.037 0.84 0.00 41.79 3.16
755 792 7.557719 CCAGATACAATTATTTGGAGGACAAGT 59.442 37.037 2.66 0.00 40.88 3.16
756 793 9.613428 CAGATACAATTATTTGGAGGACAAGTA 57.387 33.333 2.66 0.00 40.82 2.24
761 798 8.749354 ACAATTATTTGGAGGACAAGTATTTCC 58.251 33.333 2.66 0.00 40.82 3.13
762 799 6.995511 TTATTTGGAGGACAAGTATTTCCG 57.004 37.500 0.00 0.00 40.82 4.30
763 800 3.343941 TTGGAGGACAAGTATTTCCGG 57.656 47.619 0.00 0.00 36.95 5.14
764 801 2.542550 TGGAGGACAAGTATTTCCGGA 58.457 47.619 0.00 0.00 36.95 5.14
765 802 2.235402 TGGAGGACAAGTATTTCCGGAC 59.765 50.000 1.83 0.00 36.95 4.79
766 803 2.537401 GAGGACAAGTATTTCCGGACG 58.463 52.381 1.83 0.00 36.95 4.79
767 804 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
768 805 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
769 806 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
770 807 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
771 808 1.479323 CAAGTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
772 809 1.856629 AGTATTTCCGGACGGAGGAA 58.143 50.000 13.64 6.93 46.06 3.36
776 813 3.602104 TTCCGGACGGAGGAAGTAT 57.398 52.632 13.64 0.00 46.06 2.12
777 814 1.108776 TTCCGGACGGAGGAAGTATG 58.891 55.000 13.64 0.00 46.06 2.39
778 815 0.033796 TCCGGACGGAGGAAGTATGT 60.034 55.000 9.76 0.00 39.76 2.29
779 816 0.102481 CCGGACGGAGGAAGTATGTG 59.898 60.000 4.40 0.00 37.50 3.21
780 817 0.815734 CGGACGGAGGAAGTATGTGT 59.184 55.000 0.00 0.00 0.00 3.72
781 818 1.203994 CGGACGGAGGAAGTATGTGTT 59.796 52.381 0.00 0.00 0.00 3.32
784 821 4.369182 GGACGGAGGAAGTATGTGTTATG 58.631 47.826 0.00 0.00 0.00 1.90
806 843 6.024552 TGTGTTATGGCAGAGAATTTTTCC 57.975 37.500 0.00 0.00 0.00 3.13
856 893 6.593770 GCCCTAAAACCATTTTTGGACATTAG 59.406 38.462 13.79 7.77 44.74 1.73
857 894 7.526359 GCCCTAAAACCATTTTTGGACATTAGA 60.526 37.037 13.79 0.00 44.74 2.10
936 980 5.524284 CGAACTCTATATTAGCAGTGCTGT 58.476 41.667 27.97 17.70 40.10 4.40
937 981 5.980116 CGAACTCTATATTAGCAGTGCTGTT 59.020 40.000 27.97 18.87 40.10 3.16
940 984 6.045318 ACTCTATATTAGCAGTGCTGTTGTG 58.955 40.000 27.97 12.71 40.10 3.33
1326 1371 0.103937 CACTCATCCTCTTCGCCTCC 59.896 60.000 0.00 0.00 0.00 4.30
1378 1423 0.968901 CCACTACACCTACCCGCTCA 60.969 60.000 0.00 0.00 0.00 4.26
1395 1440 2.091112 CACTCTCAAGTCCTGCGCG 61.091 63.158 0.00 0.00 31.71 6.86
1566 1611 2.494918 CACCGGGATGTCGTCTCC 59.505 66.667 6.32 0.00 0.00 3.71
1623 1668 1.966451 GTTTCAGAGGGCCGTGGTG 60.966 63.158 0.65 0.00 0.00 4.17
1728 1773 2.681848 CAAGGCAGAGGACATCACATTC 59.318 50.000 0.00 0.00 0.00 2.67
1746 1791 2.526304 TCGTGAGGGAAGTGTTTGAG 57.474 50.000 0.00 0.00 0.00 3.02
1758 1803 5.221126 GGAAGTGTTTGAGAAGATGCAGTTT 60.221 40.000 0.00 0.00 0.00 2.66
1914 1959 1.284982 CTTGTTGCGGACAGGTCTCG 61.285 60.000 0.00 3.11 39.94 4.04
2082 2127 2.353803 GCGGGATGTAGTATCATGGACC 60.354 54.545 0.00 0.00 0.00 4.46
2103 2148 2.135139 TCGATCATTTCTGCATACGGC 58.865 47.619 0.00 0.00 45.13 5.68
2159 2204 2.820178 TGAGAACATGCTAGGACAGGA 58.180 47.619 0.00 0.00 0.00 3.86
2313 2358 8.370940 CACTATACATGTATGGTGGATCTTCTT 58.629 37.037 36.50 12.88 45.47 2.52
2619 2664 6.222389 CAATGTTGAGATAGGAGATCAGGTC 58.778 44.000 0.00 0.00 0.00 3.85
2658 2703 5.012458 TGGTGATAGATCTCATCCACAATCC 59.988 44.000 0.00 0.00 0.00 3.01
2682 2727 7.393234 TCCGAAATGATCTACAAAAAGTTGGAT 59.607 33.333 0.00 0.00 39.22 3.41
3051 3096 4.286808 TCAAGTTGGTCTGATTGATGAGGA 59.713 41.667 2.34 0.00 0.00 3.71
3183 3228 7.551585 TGCATTACCAGAGTCAAAAAGAAAAA 58.448 30.769 0.00 0.00 0.00 1.94
3227 3272 7.498570 GGAGTGAGCATCTAATTTTCTGATCTT 59.501 37.037 0.00 0.00 34.92 2.40
3303 3349 1.673168 CAATGCAAGCTACTCCCTCC 58.327 55.000 0.00 0.00 0.00 4.30
3764 3856 5.066246 ACAAATTTGAGGCATGGTTTTGTTG 59.934 36.000 24.64 0.00 33.40 3.33
3767 3859 1.686052 TGAGGCATGGTTTTGTTGTCC 59.314 47.619 0.00 0.00 0.00 4.02
3815 3907 8.594550 AGCTGTCTGTAAGTCTTCCTTTTTATA 58.405 33.333 0.00 0.00 34.46 0.98
3914 4006 8.553459 AGTTTAGTCAGTCCAGTTTGATTATG 57.447 34.615 0.00 0.00 0.00 1.90
3947 4039 4.065088 TCACAATTTCTCTGTACAGTGCC 58.935 43.478 21.99 0.00 0.00 5.01
3955 4047 0.957395 CTGTACAGTGCCCAGGCTTG 60.957 60.000 15.06 10.73 42.51 4.01
3985 4079 5.929415 GCGGTCAATAATTTTGGAAAAGGAA 59.071 36.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.606961 TCAAAATTGTCGAGCCACTTTTC 58.393 39.130 2.40 0.00 28.36 2.29
13 14 4.338118 TCTCAAAATTGTCGAGCCACTTTT 59.662 37.500 0.00 0.00 30.21 2.27
14 15 3.882888 TCTCAAAATTGTCGAGCCACTTT 59.117 39.130 0.00 0.00 0.00 2.66
33 34 2.185608 GGCAAGCTCCGGACTCTC 59.814 66.667 0.00 0.00 0.00 3.20
34 35 3.764466 CGGCAAGCTCCGGACTCT 61.764 66.667 0.00 0.00 45.38 3.24
59 61 0.107897 TCCATGCCACCATGTCGTAC 60.108 55.000 3.34 0.00 45.90 3.67
67 69 1.922057 CCATACCTCCATGCCACCA 59.078 57.895 0.00 0.00 0.00 4.17
92 94 0.390472 GGAGGTTGAGCTCGGAACAG 60.390 60.000 16.28 0.00 0.00 3.16
93 95 0.832135 AGGAGGTTGAGCTCGGAACA 60.832 55.000 16.28 0.00 0.00 3.18
115 117 2.875322 GAACCCCGCCTCCTCTACCT 62.875 65.000 0.00 0.00 0.00 3.08
163 174 3.056821 GCGGTTTGCCTTCTCCTTTTTAT 60.057 43.478 0.00 0.00 37.76 1.40
164 175 2.295070 GCGGTTTGCCTTCTCCTTTTTA 59.705 45.455 0.00 0.00 37.76 1.52
188 199 0.179009 AGGTGTGTTGCACATCAGCT 60.179 50.000 13.97 9.19 46.74 4.24
198 209 1.337823 CCTACCCTCGAAGGTGTGTTG 60.338 57.143 16.23 1.28 41.42 3.33
200 211 0.903454 CCCTACCCTCGAAGGTGTGT 60.903 60.000 16.23 2.00 41.42 3.72
202 213 0.614134 GTCCCTACCCTCGAAGGTGT 60.614 60.000 16.23 7.81 41.42 4.16
203 214 1.664321 CGTCCCTACCCTCGAAGGTG 61.664 65.000 16.23 5.89 41.42 4.00
208 219 3.925630 AACGCGTCCCTACCCTCGA 62.926 63.158 14.44 0.00 0.00 4.04
214 225 2.056577 GCATATACAACGCGTCCCTAC 58.943 52.381 14.44 0.00 0.00 3.18
221 232 3.599339 CGAACTTCTGCATATACAACGCG 60.599 47.826 3.53 3.53 0.00 6.01
224 235 4.566759 TCAGCGAACTTCTGCATATACAAC 59.433 41.667 0.00 0.00 0.00 3.32
230 241 1.740380 GCCTCAGCGAACTTCTGCATA 60.740 52.381 0.00 0.00 0.00 3.14
244 255 1.152440 AGGTCCGGATAGGCCTCAG 60.152 63.158 9.68 0.00 40.86 3.35
245 256 3.025107 AGGTCCGGATAGGCCTCA 58.975 61.111 9.68 0.00 40.86 3.86
261 272 4.845580 AAGCTCCGCCGCCATGAG 62.846 66.667 0.00 0.00 0.00 2.90
269 280 2.476320 GGAGAATGCAAGCTCCGCC 61.476 63.158 18.83 5.39 41.10 6.13
286 297 2.048222 TGCTTGTCTTCTCGGCGG 60.048 61.111 7.21 0.00 0.00 6.13
287 298 1.373497 ACTGCTTGTCTTCTCGGCG 60.373 57.895 0.00 0.00 0.00 6.46
289 300 0.601046 TGCACTGCTTGTCTTCTCGG 60.601 55.000 1.98 0.00 0.00 4.63
290 301 0.788995 CTGCACTGCTTGTCTTCTCG 59.211 55.000 1.98 0.00 0.00 4.04
298 309 0.879765 CCTTCTTCCTGCACTGCTTG 59.120 55.000 1.98 0.00 0.00 4.01
304 315 0.390472 CGTCCTCCTTCTTCCTGCAC 60.390 60.000 0.00 0.00 0.00 4.57
305 316 0.541998 TCGTCCTCCTTCTTCCTGCA 60.542 55.000 0.00 0.00 0.00 4.41
309 320 1.107945 CTCCTCGTCCTCCTTCTTCC 58.892 60.000 0.00 0.00 0.00 3.46
335 346 1.949847 ATCTTGACGCAGACCCTCGG 61.950 60.000 0.00 0.00 0.00 4.63
337 348 0.526524 CGATCTTGACGCAGACCCTC 60.527 60.000 0.00 0.00 0.00 4.30
342 353 3.443099 AATCATCGATCTTGACGCAGA 57.557 42.857 0.00 0.00 0.00 4.26
344 355 5.177511 GGAATAAATCATCGATCTTGACGCA 59.822 40.000 0.00 0.00 0.00 5.24
350 361 5.471456 GCTGGTGGAATAAATCATCGATCTT 59.529 40.000 0.00 0.00 0.00 2.40
353 364 4.978099 AGCTGGTGGAATAAATCATCGAT 58.022 39.130 0.00 0.00 0.00 3.59
376 387 0.611200 CGTCCCAACCATACCTGTCA 59.389 55.000 0.00 0.00 0.00 3.58
388 399 2.038975 CCCTCCTCCTCGTCCCAA 59.961 66.667 0.00 0.00 0.00 4.12
389 400 4.075793 CCCCTCCTCCTCGTCCCA 62.076 72.222 0.00 0.00 0.00 4.37
395 406 2.371259 GCTTCACCCCCTCCTCCTC 61.371 68.421 0.00 0.00 0.00 3.71
401 413 1.684734 TAGACGGCTTCACCCCCTC 60.685 63.158 0.00 0.00 33.26 4.30
430 442 3.450115 GAGGGACCCGTCTCGTGG 61.450 72.222 4.40 0.00 34.61 4.94
437 449 1.381872 CTCCATCAGAGGGACCCGT 60.382 63.158 4.40 0.00 39.13 5.28
446 458 0.032515 TAGTTCGCCCCTCCATCAGA 60.033 55.000 0.00 0.00 0.00 3.27
459 471 4.500837 CCTCATCAAAGTCGATGTAGTTCG 59.499 45.833 0.00 0.00 42.82 3.95
475 487 6.419484 TCTTTTCACTGTACTTCCTCATCA 57.581 37.500 0.00 0.00 0.00 3.07
478 490 6.049149 CACTTCTTTTCACTGTACTTCCTCA 58.951 40.000 0.00 0.00 0.00 3.86
489 512 6.778559 ACTACTACTCCTCACTTCTTTTCACT 59.221 38.462 0.00 0.00 0.00 3.41
505 528 7.254966 CCACACTAGATCATCACACTACTACTC 60.255 44.444 0.00 0.00 0.00 2.59
515 538 3.701542 TCACCTCCACACTAGATCATCAC 59.298 47.826 0.00 0.00 0.00 3.06
516 539 3.956848 CTCACCTCCACACTAGATCATCA 59.043 47.826 0.00 0.00 0.00 3.07
533 556 1.561643 TCATCACACTCCTCCTCACC 58.438 55.000 0.00 0.00 0.00 4.02
534 557 3.030291 AGATCATCACACTCCTCCTCAC 58.970 50.000 0.00 0.00 0.00 3.51
622 651 8.849168 TCAAACATGAACACATATTCTGAAACT 58.151 29.630 0.00 0.00 0.00 2.66
623 652 9.462174 TTCAAACATGAACACATATTCTGAAAC 57.538 29.630 0.00 0.00 0.00 2.78
627 656 9.467258 AACTTTCAAACATGAACACATATTCTG 57.533 29.630 0.00 0.00 0.00 3.02
630 659 9.814899 TGAAACTTTCAAACATGAACACATATT 57.185 25.926 0.00 0.00 36.59 1.28
633 662 7.546358 TCTGAAACTTTCAAACATGAACACAT 58.454 30.769 0.00 0.00 39.58 3.21
634 663 6.918626 TCTGAAACTTTCAAACATGAACACA 58.081 32.000 0.00 0.00 39.58 3.72
635 664 7.810766 TTCTGAAACTTTCAAACATGAACAC 57.189 32.000 0.00 0.00 39.58 3.32
652 689 5.710567 TCTGAACGGAGAGAGTATTCTGAAA 59.289 40.000 0.00 0.00 32.53 2.69
655 692 5.568685 TTCTGAACGGAGAGAGTATTCTG 57.431 43.478 0.00 0.00 32.53 3.02
656 693 6.783708 ATTTCTGAACGGAGAGAGTATTCT 57.216 37.500 0.00 0.00 36.01 2.40
657 694 7.708998 AGTATTTCTGAACGGAGAGAGTATTC 58.291 38.462 0.00 0.00 0.00 1.75
660 697 6.433404 ACAAGTATTTCTGAACGGAGAGAGTA 59.567 38.462 0.00 0.00 0.00 2.59
663 700 5.336531 GGACAAGTATTTCTGAACGGAGAGA 60.337 44.000 0.00 0.00 0.00 3.10
665 702 4.527038 AGGACAAGTATTTCTGAACGGAGA 59.473 41.667 0.00 0.00 0.00 3.71
666 703 4.822026 AGGACAAGTATTTCTGAACGGAG 58.178 43.478 0.00 0.00 0.00 4.63
667 704 4.617530 CGAGGACAAGTATTTCTGAACGGA 60.618 45.833 0.00 0.00 0.00 4.69
668 705 3.612860 CGAGGACAAGTATTTCTGAACGG 59.387 47.826 0.00 0.00 0.00 4.44
669 706 4.482386 TCGAGGACAAGTATTTCTGAACG 58.518 43.478 0.00 0.00 0.00 3.95
670 707 6.780706 TTTCGAGGACAAGTATTTCTGAAC 57.219 37.500 0.00 0.00 0.00 3.18
672 709 5.874810 CCATTTCGAGGACAAGTATTTCTGA 59.125 40.000 0.00 0.00 0.00 3.27
675 712 6.927294 ATCCATTTCGAGGACAAGTATTTC 57.073 37.500 0.00 0.00 38.13 2.17
676 713 8.801882 TTTATCCATTTCGAGGACAAGTATTT 57.198 30.769 0.00 0.00 38.13 1.40
677 714 8.801882 TTTTATCCATTTCGAGGACAAGTATT 57.198 30.769 0.00 0.00 38.13 1.89
678 715 8.980481 ATTTTATCCATTTCGAGGACAAGTAT 57.020 30.769 0.00 0.00 38.13 2.12
679 716 9.542462 CTATTTTATCCATTTCGAGGACAAGTA 57.458 33.333 0.00 0.00 38.13 2.24
680 717 8.265055 TCTATTTTATCCATTTCGAGGACAAGT 58.735 33.333 0.00 0.00 38.13 3.16
681 718 8.662781 TCTATTTTATCCATTTCGAGGACAAG 57.337 34.615 0.00 0.00 38.13 3.16
682 719 9.056005 CATCTATTTTATCCATTTCGAGGACAA 57.944 33.333 0.00 0.00 38.13 3.18
683 720 8.210946 ACATCTATTTTATCCATTTCGAGGACA 58.789 33.333 0.00 0.00 38.13 4.02
684 721 8.608844 ACATCTATTTTATCCATTTCGAGGAC 57.391 34.615 0.00 0.00 38.13 3.85
723 760 9.799106 CCTCCAAATAATTGTATCTGGACTTAT 57.201 33.333 0.00 0.00 32.75 1.73
724 761 8.998814 TCCTCCAAATAATTGTATCTGGACTTA 58.001 33.333 0.00 0.00 32.75 2.24
725 762 7.775561 GTCCTCCAAATAATTGTATCTGGACTT 59.224 37.037 0.00 0.00 32.75 3.01
726 763 7.092444 TGTCCTCCAAATAATTGTATCTGGACT 60.092 37.037 0.00 0.00 32.75 3.85
727 764 7.054124 TGTCCTCCAAATAATTGTATCTGGAC 58.946 38.462 0.00 0.00 32.75 4.02
728 765 7.206789 TGTCCTCCAAATAATTGTATCTGGA 57.793 36.000 0.00 0.00 34.93 3.86
729 766 7.557719 ACTTGTCCTCCAAATAATTGTATCTGG 59.442 37.037 0.00 0.00 34.60 3.86
730 767 8.511604 ACTTGTCCTCCAAATAATTGTATCTG 57.488 34.615 0.00 0.00 34.60 2.90
735 772 8.749354 GGAAATACTTGTCCTCCAAATAATTGT 58.251 33.333 0.00 0.00 34.60 2.71
736 773 7.915397 CGGAAATACTTGTCCTCCAAATAATTG 59.085 37.037 0.00 0.00 36.25 2.32
737 774 7.068226 CCGGAAATACTTGTCCTCCAAATAATT 59.932 37.037 0.00 0.00 31.20 1.40
738 775 6.546034 CCGGAAATACTTGTCCTCCAAATAAT 59.454 38.462 0.00 0.00 31.20 1.28
739 776 5.883673 CCGGAAATACTTGTCCTCCAAATAA 59.116 40.000 0.00 0.00 31.20 1.40
740 777 5.190132 TCCGGAAATACTTGTCCTCCAAATA 59.810 40.000 0.00 0.00 31.20 1.40
741 778 4.018779 TCCGGAAATACTTGTCCTCCAAAT 60.019 41.667 0.00 0.00 31.20 2.32
742 779 3.328343 TCCGGAAATACTTGTCCTCCAAA 59.672 43.478 0.00 0.00 31.20 3.28
743 780 2.907696 TCCGGAAATACTTGTCCTCCAA 59.092 45.455 0.00 0.00 0.00 3.53
744 781 2.235402 GTCCGGAAATACTTGTCCTCCA 59.765 50.000 5.23 0.00 0.00 3.86
745 782 2.737679 CGTCCGGAAATACTTGTCCTCC 60.738 54.545 5.23 0.00 0.00 4.30
746 783 2.537401 CGTCCGGAAATACTTGTCCTC 58.463 52.381 5.23 0.00 0.00 3.71
747 784 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
748 785 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
749 786 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
750 787 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
751 788 1.479323 TCCTCCGTCCGGAAATACTTG 59.521 52.381 5.23 0.00 44.66 3.16
752 789 1.856629 TCCTCCGTCCGGAAATACTT 58.143 50.000 5.23 0.00 44.66 2.24
753 790 1.755380 CTTCCTCCGTCCGGAAATACT 59.245 52.381 5.23 0.00 44.66 2.12
754 791 1.479730 ACTTCCTCCGTCCGGAAATAC 59.520 52.381 5.23 0.00 44.66 1.89
755 792 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
756 793 1.856629 TACTTCCTCCGTCCGGAAAT 58.143 50.000 5.23 0.00 44.66 2.17
757 794 1.479323 CATACTTCCTCCGTCCGGAAA 59.521 52.381 5.23 1.47 44.66 3.13
758 795 1.108776 CATACTTCCTCCGTCCGGAA 58.891 55.000 5.23 0.00 44.66 4.30
759 796 0.033796 ACATACTTCCTCCGTCCGGA 60.034 55.000 0.00 0.00 42.90 5.14
760 797 0.102481 CACATACTTCCTCCGTCCGG 59.898 60.000 0.00 0.00 0.00 5.14
761 798 0.815734 ACACATACTTCCTCCGTCCG 59.184 55.000 0.00 0.00 0.00 4.79
762 799 4.142004 ACATAACACATACTTCCTCCGTCC 60.142 45.833 0.00 0.00 0.00 4.79
763 800 4.804139 CACATAACACATACTTCCTCCGTC 59.196 45.833 0.00 0.00 0.00 4.79
764 801 4.222145 ACACATAACACATACTTCCTCCGT 59.778 41.667 0.00 0.00 0.00 4.69
765 802 4.755411 ACACATAACACATACTTCCTCCG 58.245 43.478 0.00 0.00 0.00 4.63
766 803 7.226720 CCATAACACATAACACATACTTCCTCC 59.773 40.741 0.00 0.00 0.00 4.30
767 804 7.254795 GCCATAACACATAACACATACTTCCTC 60.255 40.741 0.00 0.00 0.00 3.71
768 805 6.542370 GCCATAACACATAACACATACTTCCT 59.458 38.462 0.00 0.00 0.00 3.36
769 806 6.317642 TGCCATAACACATAACACATACTTCC 59.682 38.462 0.00 0.00 0.00 3.46
770 807 7.279981 TCTGCCATAACACATAACACATACTTC 59.720 37.037 0.00 0.00 0.00 3.01
771 808 7.109501 TCTGCCATAACACATAACACATACTT 58.890 34.615 0.00 0.00 0.00 2.24
772 809 6.649155 TCTGCCATAACACATAACACATACT 58.351 36.000 0.00 0.00 0.00 2.12
773 810 6.761242 TCTCTGCCATAACACATAACACATAC 59.239 38.462 0.00 0.00 0.00 2.39
774 811 6.883744 TCTCTGCCATAACACATAACACATA 58.116 36.000 0.00 0.00 0.00 2.29
775 812 5.744171 TCTCTGCCATAACACATAACACAT 58.256 37.500 0.00 0.00 0.00 3.21
776 813 5.159273 TCTCTGCCATAACACATAACACA 57.841 39.130 0.00 0.00 0.00 3.72
777 814 6.683974 ATTCTCTGCCATAACACATAACAC 57.316 37.500 0.00 0.00 0.00 3.32
778 815 7.701539 AAATTCTCTGCCATAACACATAACA 57.298 32.000 0.00 0.00 0.00 2.41
779 816 8.986477 AAAAATTCTCTGCCATAACACATAAC 57.014 30.769 0.00 0.00 0.00 1.89
780 817 8.250332 GGAAAAATTCTCTGCCATAACACATAA 58.750 33.333 0.00 0.00 0.00 1.90
781 818 7.415095 CGGAAAAATTCTCTGCCATAACACATA 60.415 37.037 0.00 0.00 0.00 2.29
784 821 5.095490 CGGAAAAATTCTCTGCCATAACAC 58.905 41.667 0.00 0.00 0.00 3.32
859 896 9.570468 AAGAGCATCATCAACAGATAATGTATT 57.430 29.630 0.00 0.00 38.60 1.89
866 903 5.070847 TGGCTAAGAGCATCATCAACAGATA 59.929 40.000 0.21 0.00 44.75 1.98
917 954 5.464722 CCACAACAGCACTGCTAATATAGAG 59.535 44.000 2.39 0.00 36.40 2.43
918 955 5.359756 CCACAACAGCACTGCTAATATAGA 58.640 41.667 2.39 0.00 36.40 1.98
919 956 4.024556 GCCACAACAGCACTGCTAATATAG 60.025 45.833 2.39 0.00 36.40 1.31
920 957 3.876914 GCCACAACAGCACTGCTAATATA 59.123 43.478 2.39 0.00 36.40 0.86
923 960 0.883833 GCCACAACAGCACTGCTAAT 59.116 50.000 2.39 0.00 36.40 1.73
925 962 1.148048 TGCCACAACAGCACTGCTA 59.852 52.632 2.39 0.00 36.40 3.49
1053 1098 4.270153 ACCAGGTGGAGGAGGCCA 62.270 66.667 5.01 0.00 38.94 5.36
1123 1168 1.381872 GCTGGAGGAGGAGTAGGCA 60.382 63.158 0.00 0.00 0.00 4.75
1131 1176 3.086600 GGGAGGTGCTGGAGGAGG 61.087 72.222 0.00 0.00 0.00 4.30
1173 1218 3.221222 GCGTAGGCCTGGATGAGT 58.779 61.111 17.99 0.00 0.00 3.41
1312 1357 1.449353 GCATGGAGGCGAAGAGGAT 59.551 57.895 0.00 0.00 0.00 3.24
1378 1423 2.259818 CGCGCAGGACTTGAGAGT 59.740 61.111 8.75 0.00 39.32 3.24
1452 1497 0.926174 CGAAGAGATTCGCGTCGAGG 60.926 60.000 17.76 0.00 37.14 4.63
1512 1557 1.227263 CTGGTAAGCATCGTCCGGG 60.227 63.158 0.00 0.00 0.00 5.73
1623 1668 2.171003 CCCACCAACTCCCTGAAAATC 58.829 52.381 0.00 0.00 0.00 2.17
1728 1773 2.526304 TCTCAAACACTTCCCTCACG 57.474 50.000 0.00 0.00 0.00 4.35
1746 1791 8.499403 AAATAAGTCCTCTAAACTGCATCTTC 57.501 34.615 0.00 0.00 0.00 2.87
1758 1803 7.200434 AGCATTCCAAGAAATAAGTCCTCTA 57.800 36.000 0.00 0.00 0.00 2.43
1914 1959 1.336795 CGTTTCCCCAGTGAAAATGCC 60.337 52.381 0.00 0.00 36.09 4.40
2082 2127 2.156504 GCCGTATGCAGAAATGATCGAG 59.843 50.000 0.00 0.00 40.77 4.04
2103 2148 3.118454 GTCCCATGACCACGCACG 61.118 66.667 0.00 0.00 35.34 5.34
2159 2204 2.880890 GCAATAGAATCCGGTTGCAGAT 59.119 45.455 17.53 0.00 44.63 2.90
2313 2358 1.554583 TTATACACCCAGCACGCCCA 61.555 55.000 0.00 0.00 0.00 5.36
2658 2703 8.236586 TCATCCAACTTTTTGTAGATCATTTCG 58.763 33.333 0.00 0.00 0.00 3.46
2682 2727 3.519510 CCCTGATCCTTCCTAACAACTCA 59.480 47.826 0.00 0.00 0.00 3.41
2727 2772 4.285775 TCAACATCATGAAGTGTACCCTCA 59.714 41.667 4.02 0.00 0.00 3.86
3051 3096 6.779860 TGCCAATCTTCTTACTAAGGTCTTT 58.220 36.000 0.00 0.00 0.00 2.52
3183 3228 3.226777 CTCCCTGGATGAGTCTTCGTAT 58.773 50.000 0.00 0.00 0.00 3.06
3227 3272 9.685828 GTTGTTGCTTTTACTGAACCAATAATA 57.314 29.630 0.00 0.00 0.00 0.98
3303 3349 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3721 3813 2.438021 TGTGTAAGGGCAAGAGAAGTGT 59.562 45.455 0.00 0.00 0.00 3.55
3764 3856 5.710984 TCGTGATCAAAACTAAGAGAGGAC 58.289 41.667 0.00 0.00 0.00 3.85
3767 3859 7.167302 CAGCTATCGTGATCAAAACTAAGAGAG 59.833 40.741 0.00 0.00 0.00 3.20
3838 3930 0.239082 CAGTTGCTTTCAGCGCATCA 59.761 50.000 11.47 0.00 46.26 3.07
3914 4006 8.976986 ACAGAGAAATTGTGATTTAATTCTGC 57.023 30.769 14.08 0.00 39.23 4.26
3932 4024 0.976641 CCTGGGCACTGTACAGAGAA 59.023 55.000 29.30 9.75 34.21 2.87
3955 4047 2.774439 AAATTATTGACCGCGCCATC 57.226 45.000 0.00 0.00 0.00 3.51
3962 4054 7.655732 ACTTTCCTTTTCCAAAATTATTGACCG 59.344 33.333 3.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.