Multiple sequence alignment - TraesCS4A01G071500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G071500 chr4A 100.000 4599 0 0 1 4599 68956467 68961065 0.000000e+00 8493.0
1 TraesCS4A01G071500 chr4A 91.396 523 43 2 4078 4599 6014079 6014600 0.000000e+00 715.0
2 TraesCS4A01G071500 chr4A 94.932 296 14 1 324 619 685424116 685424410 3.240000e-126 462.0
3 TraesCS4A01G071500 chr4A 92.697 178 7 4 617 788 1731524 1731347 7.640000e-63 252.0
4 TraesCS4A01G071500 chr4A 74.386 285 69 4 2562 2844 680452704 680452986 8.080000e-23 119.0
5 TraesCS4A01G071500 chr4A 95.455 44 2 0 3864 3907 68960286 68960329 2.300000e-08 71.3
6 TraesCS4A01G071500 chr4A 95.455 44 2 0 3820 3863 68960330 68960373 2.300000e-08 71.3
7 TraesCS4A01G071500 chr4B 94.855 3032 107 15 862 3863 476063598 476066610 0.000000e+00 4689.0
8 TraesCS4A01G071500 chr4B 76.491 285 63 4 2562 2844 596775593 596775875 7.970000e-33 152.0
9 TraesCS4A01G071500 chr4B 85.567 97 7 3 3960 4049 476066689 476066785 1.360000e-15 95.3
10 TraesCS4A01G071500 chr4D 94.988 2893 81 15 862 3720 387754659 387757521 0.000000e+00 4481.0
11 TraesCS4A01G071500 chr4D 86.154 390 46 6 351 739 439165403 439165785 9.210000e-112 414.0
12 TraesCS4A01G071500 chr4D 77.974 227 46 4 2562 2786 473856596 473856820 6.200000e-29 139.0
13 TraesCS4A01G071500 chr4D 97.143 35 1 0 3750 3784 387757526 387757560 4.970000e-05 60.2
14 TraesCS4A01G071500 chr5D 92.571 525 35 3 4076 4599 467427533 467427012 0.000000e+00 750.0
15 TraesCS4A01G071500 chr5D 95.820 311 10 3 315 623 331031862 331032171 2.470000e-137 499.0
16 TraesCS4A01G071500 chr5D 72.595 686 145 34 2296 2961 473116540 473115878 7.860000e-43 185.0
17 TraesCS4A01G071500 chr5D 72.313 307 73 12 2532 2832 298462057 298461757 8.200000e-13 86.1
18 TraesCS4A01G071500 chr2D 92.190 525 40 1 4076 4599 620188108 620188632 0.000000e+00 741.0
19 TraesCS4A01G071500 chr2D 91.667 528 38 4 4076 4599 573910388 573909863 0.000000e+00 726.0
20 TraesCS4A01G071500 chr2D 88.722 133 13 2 94 225 423605027 423604896 1.320000e-35 161.0
21 TraesCS4A01G071500 chr6D 92.176 524 38 3 4078 4599 42089350 42088828 0.000000e+00 737.0
22 TraesCS4A01G071500 chr3D 92.161 523 37 3 4078 4599 339453116 339453635 0.000000e+00 736.0
23 TraesCS4A01G071500 chr3D 92.778 180 6 4 616 788 501049435 501049614 2.120000e-63 254.0
24 TraesCS4A01G071500 chr3D 82.723 191 27 5 1066 1256 295533775 295533959 1.020000e-36 165.0
25 TraesCS4A01G071500 chr3D 89.583 48 5 0 2934 2981 487120179 487120226 1.380000e-05 62.1
26 TraesCS4A01G071500 chr5A 91.985 524 40 2 4078 4599 640393556 640393033 0.000000e+00 734.0
27 TraesCS4A01G071500 chr5A 90.811 185 9 6 617 794 607679071 607678888 1.650000e-59 241.0
28 TraesCS4A01G071500 chr5A 88.806 134 14 1 94 226 604945912 604946045 3.680000e-36 163.0
29 TraesCS4A01G071500 chr1D 91.587 523 39 5 4075 4596 59531897 59532415 0.000000e+00 717.0
30 TraesCS4A01G071500 chr1D 87.970 133 15 1 95 226 140112731 140112863 6.160000e-34 156.0
31 TraesCS4A01G071500 chr1A 91.205 523 44 2 4078 4599 549502509 549501988 0.000000e+00 710.0
32 TraesCS4A01G071500 chr3B 92.573 377 28 0 222 598 102969107 102968731 4.050000e-150 542.0
33 TraesCS4A01G071500 chr3B 95.946 296 12 0 324 619 735670700 735670405 8.950000e-132 481.0
34 TraesCS4A01G071500 chr3B 92.628 312 22 1 323 633 812605266 812604955 9.080000e-122 448.0
35 TraesCS4A01G071500 chr3B 92.233 206 8 5 591 789 187148040 187147836 7.530000e-73 285.0
36 TraesCS4A01G071500 chr3B 93.525 139 7 1 214 352 187148415 187148279 6.030000e-49 206.0
37 TraesCS4A01G071500 chr3B 93.023 129 9 0 224 352 581662293 581662165 6.070000e-44 189.0
38 TraesCS4A01G071500 chr3B 95.495 111 3 2 217 325 783146084 783146194 4.730000e-40 176.0
39 TraesCS4A01G071500 chr3B 89.552 134 13 1 94 226 542928830 542928697 7.910000e-38 169.0
40 TraesCS4A01G071500 chr3B 90.566 53 3 2 2934 2985 649998934 649998985 8.260000e-08 69.4
41 TraesCS4A01G071500 chr3B 89.583 48 5 0 2934 2981 650057994 650058041 1.380000e-05 62.1
42 TraesCS4A01G071500 chr1B 97.643 297 7 0 323 619 563061508 563061212 1.140000e-140 510.0
43 TraesCS4A01G071500 chr2B 97.569 288 7 0 322 609 690035695 690035982 1.150000e-135 494.0
44 TraesCS4A01G071500 chr2B 80.682 88 10 7 2890 2972 661450602 661450517 1.380000e-05 62.1
45 TraesCS4A01G071500 chr7A 97.818 275 6 0 324 598 570172541 570172267 4.160000e-130 475.0
46 TraesCS4A01G071500 chr7A 89.552 134 12 2 94 226 69366704 69366572 7.910000e-38 169.0
47 TraesCS4A01G071500 chr7A 87.591 137 16 1 89 224 33354749 33354613 1.710000e-34 158.0
48 TraesCS4A01G071500 chr5B 89.604 202 13 5 591 785 586857002 586856802 2.750000e-62 250.0
49 TraesCS4A01G071500 chr5B 92.045 176 7 3 617 785 459570958 459571133 1.650000e-59 241.0
50 TraesCS4A01G071500 chr5B 72.557 747 162 36 2296 3022 580514281 580513558 2.170000e-48 204.0
51 TraesCS4A01G071500 chr5B 96.364 110 3 1 217 325 406578888 406578779 3.660000e-41 180.0
52 TraesCS4A01G071500 chr5B 96.262 107 4 0 219 325 401677772 401677666 4.730000e-40 176.0
53 TraesCS4A01G071500 chr5B 71.983 464 105 25 2532 2981 352383799 352384251 3.760000e-21 113.0
54 TraesCS4A01G071500 chr2A 92.135 178 8 4 617 788 640268032 640267855 3.550000e-61 246.0
55 TraesCS4A01G071500 chr2A 88.060 134 15 1 94 226 583255602 583255469 1.710000e-34 158.0
56 TraesCS4A01G071500 chr6A 91.713 181 8 4 617 790 97091196 97091016 1.280000e-60 244.0
57 TraesCS4A01G071500 chr6A 90.977 133 8 1 217 345 39142516 39142648 4.730000e-40 176.0
58 TraesCS4A01G071500 chrUn 94.643 112 5 1 221 331 351523972 351523861 6.120000e-39 172.0
59 TraesCS4A01G071500 chrUn 76.860 121 22 6 2890 3007 26265702 26265585 3.840000e-06 63.9
60 TraesCS4A01G071500 chr3A 95.370 108 5 0 218 325 470760358 470760251 6.120000e-39 172.0
61 TraesCS4A01G071500 chr3A 89.474 133 12 2 94 225 60293304 60293173 2.850000e-37 167.0
62 TraesCS4A01G071500 chr3A 92.157 51 2 2 2939 2988 630762443 630762492 2.300000e-08 71.3
63 TraesCS4A01G071500 chr3A 89.583 48 5 0 2934 2981 630770014 630770061 1.380000e-05 62.1
64 TraesCS4A01G071500 chr7D 88.971 136 14 1 92 226 87679388 87679523 2.850000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G071500 chr4A 68956467 68961065 4598 False 2878.533333 8493 96.9700 1 4599 3 chr4A.!!$F4 4598
1 TraesCS4A01G071500 chr4A 6014079 6014600 521 False 715.000000 715 91.3960 4078 4599 1 chr4A.!!$F1 521
2 TraesCS4A01G071500 chr4B 476063598 476066785 3187 False 2392.150000 4689 90.2110 862 4049 2 chr4B.!!$F2 3187
3 TraesCS4A01G071500 chr4D 387754659 387757560 2901 False 2270.600000 4481 96.0655 862 3784 2 chr4D.!!$F3 2922
4 TraesCS4A01G071500 chr5D 467427012 467427533 521 True 750.000000 750 92.5710 4076 4599 1 chr5D.!!$R2 523
5 TraesCS4A01G071500 chr2D 620188108 620188632 524 False 741.000000 741 92.1900 4076 4599 1 chr2D.!!$F1 523
6 TraesCS4A01G071500 chr2D 573909863 573910388 525 True 726.000000 726 91.6670 4076 4599 1 chr2D.!!$R2 523
7 TraesCS4A01G071500 chr6D 42088828 42089350 522 True 737.000000 737 92.1760 4078 4599 1 chr6D.!!$R1 521
8 TraesCS4A01G071500 chr3D 339453116 339453635 519 False 736.000000 736 92.1610 4078 4599 1 chr3D.!!$F2 521
9 TraesCS4A01G071500 chr5A 640393033 640393556 523 True 734.000000 734 91.9850 4078 4599 1 chr5A.!!$R2 521
10 TraesCS4A01G071500 chr1D 59531897 59532415 518 False 717.000000 717 91.5870 4075 4596 1 chr1D.!!$F1 521
11 TraesCS4A01G071500 chr1A 549501988 549502509 521 True 710.000000 710 91.2050 4078 4599 1 chr1A.!!$R1 521
12 TraesCS4A01G071500 chr3B 187147836 187148415 579 True 245.500000 285 92.8790 214 789 2 chr3B.!!$R6 575
13 TraesCS4A01G071500 chr5B 580513558 580514281 723 True 204.000000 204 72.5570 2296 3022 1 chr5B.!!$R3 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.036294 GTGCTTGTGGTACTCCCTCC 60.036 60.000 0.00 0.00 0.00 4.30 F
510 613 0.174617 TCATTGGCTGCATGCATGTG 59.825 50.000 26.79 20.03 45.15 3.21 F
511 614 0.174617 CATTGGCTGCATGCATGTGA 59.825 50.000 26.79 13.57 45.15 3.58 F
792 902 0.178903 TGTGACCAGCCTTAGGGACT 60.179 55.000 0.00 0.00 46.37 3.85 F
998 1123 0.249657 CTCCCACTGCCTCGCTAATC 60.250 60.000 0.00 0.00 0.00 1.75 F
2522 2656 1.209127 CCCGACCGCAACAATTGTC 59.791 57.895 12.39 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2168 2302 0.256464 CGGAGTAGAGAGACACCCCT 59.744 60.000 0.00 0.00 0.00 4.79 R
2171 2305 0.680280 TGCCGGAGTAGAGAGACACC 60.680 60.000 5.05 0.00 0.00 4.16 R
2483 2617 1.674322 GGTGGTGTTGGCAGCGTAT 60.674 57.895 0.00 0.00 45.36 3.06 R
2697 2831 1.827399 ATGTTGAACTCCGTCCGCCT 61.827 55.000 0.00 0.00 0.00 5.52 R
3083 3217 0.901580 TGGACGGGTAGTTCAGGTCC 60.902 60.000 1.68 1.68 45.75 4.46 R
4093 4304 0.179145 CGTGGACGAAATAGGTCGCT 60.179 55.000 0.00 0.00 45.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.550277 TCCTATCCAGAGTCAAGCCA 57.450 50.000 0.00 0.00 0.00 4.75
20 21 2.111384 TCCTATCCAGAGTCAAGCCAC 58.889 52.381 0.00 0.00 0.00 5.01
21 22 2.114616 CCTATCCAGAGTCAAGCCACT 58.885 52.381 0.00 0.00 0.00 4.00
22 23 2.503356 CCTATCCAGAGTCAAGCCACTT 59.497 50.000 0.00 0.00 0.00 3.16
23 24 3.054802 CCTATCCAGAGTCAAGCCACTTT 60.055 47.826 0.00 0.00 0.00 2.66
24 25 2.260844 TCCAGAGTCAAGCCACTTTG 57.739 50.000 0.00 0.00 0.00 2.77
25 26 1.768275 TCCAGAGTCAAGCCACTTTGA 59.232 47.619 0.00 0.00 31.50 2.69
32 33 3.988379 TCAAGCCACTTTGACAATGAC 57.012 42.857 7.99 0.00 32.39 3.06
33 34 2.290367 TCAAGCCACTTTGACAATGACG 59.710 45.455 7.99 0.00 32.39 4.35
34 35 0.593128 AGCCACTTTGACAATGACGC 59.407 50.000 7.99 8.11 0.00 5.19
35 36 0.593128 GCCACTTTGACAATGACGCT 59.407 50.000 7.99 0.00 0.00 5.07
36 37 1.804151 GCCACTTTGACAATGACGCTA 59.196 47.619 7.99 0.00 0.00 4.26
37 38 2.412847 GCCACTTTGACAATGACGCTAC 60.413 50.000 7.99 0.00 0.00 3.58
38 39 2.159841 CCACTTTGACAATGACGCTACG 60.160 50.000 7.99 0.00 0.00 3.51
39 40 2.066262 ACTTTGACAATGACGCTACGG 58.934 47.619 7.99 0.00 0.00 4.02
40 41 2.066262 CTTTGACAATGACGCTACGGT 58.934 47.619 0.00 0.00 0.00 4.83
41 42 3.247442 CTTTGACAATGACGCTACGGTA 58.753 45.455 0.00 0.00 0.00 4.02
42 43 2.267188 TGACAATGACGCTACGGTAC 57.733 50.000 0.00 0.00 0.00 3.34
43 44 1.540707 TGACAATGACGCTACGGTACA 59.459 47.619 0.00 0.00 0.00 2.90
44 45 2.182825 GACAATGACGCTACGGTACAG 58.817 52.381 0.00 0.00 0.00 2.74
45 46 0.921347 CAATGACGCTACGGTACAGC 59.079 55.000 0.00 0.00 35.61 4.40
46 47 0.528924 AATGACGCTACGGTACAGCA 59.471 50.000 4.74 0.00 39.04 4.41
47 48 0.179145 ATGACGCTACGGTACAGCAC 60.179 55.000 4.74 0.00 39.04 4.40
48 49 1.239296 TGACGCTACGGTACAGCACT 61.239 55.000 4.74 0.00 39.04 4.40
49 50 0.522915 GACGCTACGGTACAGCACTC 60.523 60.000 4.74 0.00 39.04 3.51
50 51 1.582937 CGCTACGGTACAGCACTCG 60.583 63.158 4.74 0.00 39.04 4.18
51 52 1.226603 GCTACGGTACAGCACTCGG 60.227 63.158 0.00 0.00 38.93 4.63
52 53 1.432251 CTACGGTACAGCACTCGGG 59.568 63.158 0.00 0.00 0.00 5.14
53 54 2.609183 CTACGGTACAGCACTCGGGC 62.609 65.000 0.00 0.00 0.00 6.13
55 56 4.814294 GGTACAGCACTCGGGCGG 62.814 72.222 0.00 0.00 39.27 6.13
56 57 4.065281 GTACAGCACTCGGGCGGT 62.065 66.667 2.05 2.05 44.32 5.68
57 58 3.755628 TACAGCACTCGGGCGGTC 61.756 66.667 0.00 0.00 41.28 4.79
70 71 2.027605 CGGTCACACGCTCACACT 59.972 61.111 0.00 0.00 0.00 3.55
71 72 2.016704 CGGTCACACGCTCACACTC 61.017 63.158 0.00 0.00 0.00 3.51
72 73 2.016704 GGTCACACGCTCACACTCG 61.017 63.158 0.00 0.00 0.00 4.18
73 74 1.299165 GTCACACGCTCACACTCGT 60.299 57.895 0.00 0.00 39.79 4.18
74 75 1.008881 TCACACGCTCACACTCGTC 60.009 57.895 0.00 0.00 36.73 4.20
75 76 2.016704 CACACGCTCACACTCGTCC 61.017 63.158 0.00 0.00 36.73 4.79
76 77 2.335011 CACGCTCACACTCGTCCA 59.665 61.111 0.00 0.00 36.73 4.02
77 78 1.080501 CACGCTCACACTCGTCCAT 60.081 57.895 0.00 0.00 36.73 3.41
78 79 1.073216 CACGCTCACACTCGTCCATC 61.073 60.000 0.00 0.00 36.73 3.51
79 80 1.517257 CGCTCACACTCGTCCATCC 60.517 63.158 0.00 0.00 0.00 3.51
80 81 1.591703 GCTCACACTCGTCCATCCA 59.408 57.895 0.00 0.00 0.00 3.41
81 82 0.737715 GCTCACACTCGTCCATCCAC 60.738 60.000 0.00 0.00 0.00 4.02
82 83 0.603065 CTCACACTCGTCCATCCACA 59.397 55.000 0.00 0.00 0.00 4.17
83 84 0.317160 TCACACTCGTCCATCCACAC 59.683 55.000 0.00 0.00 0.00 3.82
84 85 0.670546 CACACTCGTCCATCCACACC 60.671 60.000 0.00 0.00 0.00 4.16
85 86 1.079127 CACTCGTCCATCCACACCC 60.079 63.158 0.00 0.00 0.00 4.61
86 87 1.535444 ACTCGTCCATCCACACCCA 60.535 57.895 0.00 0.00 0.00 4.51
87 88 1.125093 ACTCGTCCATCCACACCCAA 61.125 55.000 0.00 0.00 0.00 4.12
88 89 0.673644 CTCGTCCATCCACACCCAAC 60.674 60.000 0.00 0.00 0.00 3.77
89 90 1.072332 CGTCCATCCACACCCAACA 59.928 57.895 0.00 0.00 0.00 3.33
90 91 0.322456 CGTCCATCCACACCCAACAT 60.322 55.000 0.00 0.00 0.00 2.71
91 92 1.886222 CGTCCATCCACACCCAACATT 60.886 52.381 0.00 0.00 0.00 2.71
92 93 1.818674 GTCCATCCACACCCAACATTC 59.181 52.381 0.00 0.00 0.00 2.67
93 94 1.426983 TCCATCCACACCCAACATTCA 59.573 47.619 0.00 0.00 0.00 2.57
94 95 1.820519 CCATCCACACCCAACATTCAG 59.179 52.381 0.00 0.00 0.00 3.02
95 96 1.820519 CATCCACACCCAACATTCAGG 59.179 52.381 0.00 0.00 0.00 3.86
96 97 0.850100 TCCACACCCAACATTCAGGT 59.150 50.000 0.00 0.00 0.00 4.00
105 106 3.096489 CAACATTCAGGTGGTGTTTGG 57.904 47.619 0.00 0.00 34.09 3.28
106 107 2.430332 CAACATTCAGGTGGTGTTTGGT 59.570 45.455 0.00 0.00 34.09 3.67
107 108 2.745968 ACATTCAGGTGGTGTTTGGTT 58.254 42.857 0.00 0.00 0.00 3.67
108 109 2.430332 ACATTCAGGTGGTGTTTGGTTG 59.570 45.455 0.00 0.00 0.00 3.77
109 110 2.516227 TTCAGGTGGTGTTTGGTTGA 57.484 45.000 0.00 0.00 0.00 3.18
110 111 2.051334 TCAGGTGGTGTTTGGTTGAG 57.949 50.000 0.00 0.00 0.00 3.02
111 112 1.562008 TCAGGTGGTGTTTGGTTGAGA 59.438 47.619 0.00 0.00 0.00 3.27
112 113 2.025793 TCAGGTGGTGTTTGGTTGAGAA 60.026 45.455 0.00 0.00 0.00 2.87
113 114 2.358898 CAGGTGGTGTTTGGTTGAGAAG 59.641 50.000 0.00 0.00 0.00 2.85
114 115 2.025321 AGGTGGTGTTTGGTTGAGAAGT 60.025 45.455 0.00 0.00 0.00 3.01
115 116 2.357952 GGTGGTGTTTGGTTGAGAAGTC 59.642 50.000 0.00 0.00 0.00 3.01
116 117 3.279434 GTGGTGTTTGGTTGAGAAGTCT 58.721 45.455 0.00 0.00 0.00 3.24
117 118 3.694566 GTGGTGTTTGGTTGAGAAGTCTT 59.305 43.478 0.00 0.00 0.00 3.01
118 119 4.879545 GTGGTGTTTGGTTGAGAAGTCTTA 59.120 41.667 0.00 0.00 0.00 2.10
119 120 5.007724 GTGGTGTTTGGTTGAGAAGTCTTAG 59.992 44.000 0.00 0.00 0.00 2.18
120 121 4.515567 GGTGTTTGGTTGAGAAGTCTTAGG 59.484 45.833 0.00 0.00 0.00 2.69
121 122 5.365619 GTGTTTGGTTGAGAAGTCTTAGGA 58.634 41.667 0.00 0.00 0.00 2.94
122 123 5.236695 GTGTTTGGTTGAGAAGTCTTAGGAC 59.763 44.000 0.00 0.00 42.41 3.85
138 139 7.317390 GTCTTAGGACTTTTTCTAGTCTCAGG 58.683 42.308 0.00 0.00 43.26 3.86
139 140 6.437793 TCTTAGGACTTTTTCTAGTCTCAGGG 59.562 42.308 0.00 0.00 43.26 4.45
140 141 4.753186 AGGACTTTTTCTAGTCTCAGGGA 58.247 43.478 0.00 0.00 43.26 4.20
141 142 4.528987 AGGACTTTTTCTAGTCTCAGGGAC 59.471 45.833 0.00 0.00 43.26 4.46
211 212 5.420725 AAAGTCCTTTTTGCTTGGTTTCT 57.579 34.783 0.00 0.00 0.00 2.52
212 213 6.538945 AAAGTCCTTTTTGCTTGGTTTCTA 57.461 33.333 0.00 0.00 0.00 2.10
213 214 5.774498 AGTCCTTTTTGCTTGGTTTCTAG 57.226 39.130 0.00 0.00 0.00 2.43
214 215 4.584743 AGTCCTTTTTGCTTGGTTTCTAGG 59.415 41.667 0.00 0.00 0.00 3.02
215 216 4.583073 GTCCTTTTTGCTTGGTTTCTAGGA 59.417 41.667 0.00 0.00 0.00 2.94
216 217 5.068591 GTCCTTTTTGCTTGGTTTCTAGGAA 59.931 40.000 0.00 0.00 31.61 3.36
217 218 5.838521 TCCTTTTTGCTTGGTTTCTAGGAAT 59.161 36.000 0.00 0.00 0.00 3.01
218 219 6.326323 TCCTTTTTGCTTGGTTTCTAGGAATT 59.674 34.615 0.00 0.00 0.00 2.17
219 220 6.992123 CCTTTTTGCTTGGTTTCTAGGAATTT 59.008 34.615 0.00 0.00 0.00 1.82
220 221 7.498900 CCTTTTTGCTTGGTTTCTAGGAATTTT 59.501 33.333 0.00 0.00 0.00 1.82
221 222 8.800370 TTTTTGCTTGGTTTCTAGGAATTTTT 57.200 26.923 0.00 0.00 0.00 1.94
268 269 8.086522 GGAACTTAGAAGTAACATCACACACTA 58.913 37.037 0.00 0.00 38.57 2.74
269 270 9.640963 GAACTTAGAAGTAACATCACACACTAT 57.359 33.333 0.00 0.00 38.57 2.12
327 328 2.841442 AAGAGGTGCTTGTGGTACTC 57.159 50.000 0.00 0.00 34.93 2.59
332 333 0.036294 GTGCTTGTGGTACTCCCTCC 60.036 60.000 0.00 0.00 0.00 4.30
352 353 1.539712 CGTCCGGGTTTATTAGGCCTC 60.540 57.143 9.68 0.00 0.00 4.70
353 354 1.767088 GTCCGGGTTTATTAGGCCTCT 59.233 52.381 9.68 0.00 0.00 3.69
354 355 2.172082 GTCCGGGTTTATTAGGCCTCTT 59.828 50.000 9.68 0.00 0.00 2.85
355 356 3.389002 GTCCGGGTTTATTAGGCCTCTTA 59.611 47.826 9.68 0.00 0.00 2.10
356 357 3.644738 TCCGGGTTTATTAGGCCTCTTAG 59.355 47.826 9.68 0.00 0.00 2.18
359 360 4.135306 GGGTTTATTAGGCCTCTTAGCAC 58.865 47.826 9.68 0.00 0.00 4.40
360 361 4.141459 GGGTTTATTAGGCCTCTTAGCACT 60.141 45.833 9.68 0.00 0.00 4.40
361 362 5.071384 GGGTTTATTAGGCCTCTTAGCACTA 59.929 44.000 9.68 0.00 0.00 2.74
362 363 5.990386 GGTTTATTAGGCCTCTTAGCACTAC 59.010 44.000 9.68 0.00 0.00 2.73
363 364 6.407752 GGTTTATTAGGCCTCTTAGCACTACA 60.408 42.308 9.68 0.00 0.00 2.74
364 365 6.801718 TTATTAGGCCTCTTAGCACTACAA 57.198 37.500 9.68 0.00 0.00 2.41
365 366 4.737855 TTAGGCCTCTTAGCACTACAAG 57.262 45.455 9.68 0.00 0.00 3.16
366 367 1.208293 AGGCCTCTTAGCACTACAAGC 59.792 52.381 0.00 0.00 0.00 4.01
367 368 1.066143 GGCCTCTTAGCACTACAAGCA 60.066 52.381 0.00 0.00 0.00 3.91
368 369 2.420687 GGCCTCTTAGCACTACAAGCAT 60.421 50.000 0.00 0.00 0.00 3.79
370 371 3.866651 CCTCTTAGCACTACAAGCATGT 58.133 45.455 0.00 0.00 43.74 3.21
373 374 2.691409 TAGCACTACAAGCATGTCCC 57.309 50.000 0.00 0.00 41.05 4.46
374 375 0.987294 AGCACTACAAGCATGTCCCT 59.013 50.000 0.00 0.00 41.05 4.20
375 376 1.352352 AGCACTACAAGCATGTCCCTT 59.648 47.619 0.00 0.00 41.05 3.95
376 377 2.162681 GCACTACAAGCATGTCCCTTT 58.837 47.619 0.00 0.00 41.05 3.11
377 378 2.558359 GCACTACAAGCATGTCCCTTTT 59.442 45.455 0.00 0.00 41.05 2.27
378 379 3.005791 GCACTACAAGCATGTCCCTTTTT 59.994 43.478 0.00 0.00 41.05 1.94
379 380 4.217550 GCACTACAAGCATGTCCCTTTTTA 59.782 41.667 0.00 0.00 41.05 1.52
380 381 5.105756 GCACTACAAGCATGTCCCTTTTTAT 60.106 40.000 0.00 0.00 41.05 1.40
381 382 6.094881 GCACTACAAGCATGTCCCTTTTTATA 59.905 38.462 0.00 0.00 41.05 0.98
383 384 8.184192 CACTACAAGCATGTCCCTTTTTATAAG 58.816 37.037 0.00 0.00 41.05 1.73
384 385 6.530019 ACAAGCATGTCCCTTTTTATAAGG 57.470 37.500 0.00 0.00 33.41 2.69
385 386 5.105351 ACAAGCATGTCCCTTTTTATAAGGC 60.105 40.000 0.00 0.00 33.41 4.35
386 387 3.960755 AGCATGTCCCTTTTTATAAGGCC 59.039 43.478 0.00 0.00 36.10 5.19
388 389 4.038042 GCATGTCCCTTTTTATAAGGCCTC 59.962 45.833 5.23 0.00 36.10 4.70
389 390 3.881220 TGTCCCTTTTTATAAGGCCTCG 58.119 45.455 5.23 0.00 36.10 4.63
390 391 2.617308 GTCCCTTTTTATAAGGCCTCGC 59.383 50.000 5.23 0.00 36.10 5.03
391 392 2.508300 TCCCTTTTTATAAGGCCTCGCT 59.492 45.455 5.23 0.00 36.10 4.93
393 394 3.699538 CCCTTTTTATAAGGCCTCGCTTT 59.300 43.478 5.23 0.00 36.10 3.51
394 395 4.440112 CCCTTTTTATAAGGCCTCGCTTTG 60.440 45.833 5.23 0.00 36.10 2.77
395 396 4.440112 CCTTTTTATAAGGCCTCGCTTTGG 60.440 45.833 5.23 0.00 0.00 3.28
397 398 3.637911 TTATAAGGCCTCGCTTTGGAA 57.362 42.857 5.23 0.00 0.00 3.53
398 399 2.507407 ATAAGGCCTCGCTTTGGAAA 57.493 45.000 5.23 0.00 0.00 3.13
399 400 1.821216 TAAGGCCTCGCTTTGGAAAG 58.179 50.000 5.23 0.00 39.03 2.62
402 403 0.453390 GGCCTCGCTTTGGAAAGATG 59.547 55.000 0.00 0.00 38.28 2.90
404 405 1.167851 CCTCGCTTTGGAAAGATGCA 58.832 50.000 3.23 0.00 38.28 3.96
406 407 2.479049 CCTCGCTTTGGAAAGATGCATG 60.479 50.000 2.46 0.00 38.28 4.06
407 408 1.135315 TCGCTTTGGAAAGATGCATGC 60.135 47.619 11.82 11.82 38.28 4.06
409 512 2.737359 CGCTTTGGAAAGATGCATGCAT 60.737 45.455 32.66 32.66 38.28 3.96
436 539 5.943706 CCATTTGATTGGTTGCATTGAAA 57.056 34.783 0.00 0.00 31.74 2.69
437 540 5.933790 CCATTTGATTGGTTGCATTGAAAG 58.066 37.500 0.00 0.00 31.74 2.62
438 541 5.470777 CCATTTGATTGGTTGCATTGAAAGT 59.529 36.000 0.00 0.00 31.74 2.66
443 546 5.697178 TGATTGGTTGCATTGAAAGTCATTG 59.303 36.000 0.00 0.00 32.57 2.82
444 547 4.669206 TGGTTGCATTGAAAGTCATTGT 57.331 36.364 0.00 0.00 32.17 2.71
445 548 5.021033 TGGTTGCATTGAAAGTCATTGTT 57.979 34.783 0.00 0.00 32.17 2.83
446 549 4.809958 TGGTTGCATTGAAAGTCATTGTTG 59.190 37.500 0.00 0.00 32.17 3.33
447 550 4.810491 GGTTGCATTGAAAGTCATTGTTGT 59.190 37.500 0.00 0.00 32.17 3.32
448 551 5.294060 GGTTGCATTGAAAGTCATTGTTGTT 59.706 36.000 0.00 0.00 32.17 2.83
450 553 4.809958 TGCATTGAAAGTCATTGTTGTTGG 59.190 37.500 0.00 0.00 32.17 3.77
451 554 4.810491 GCATTGAAAGTCATTGTTGTTGGT 59.190 37.500 0.00 0.00 32.17 3.67
453 556 3.779759 TGAAAGTCATTGTTGTTGGTGC 58.220 40.909 0.00 0.00 0.00 5.01
454 557 2.888834 AAGTCATTGTTGTTGGTGCC 57.111 45.000 0.00 0.00 0.00 5.01
455 558 1.774110 AGTCATTGTTGTTGGTGCCA 58.226 45.000 0.00 0.00 0.00 4.92
456 559 2.318908 AGTCATTGTTGTTGGTGCCAT 58.681 42.857 0.00 0.00 0.00 4.40
457 560 2.036217 AGTCATTGTTGTTGGTGCCATG 59.964 45.455 0.00 0.00 0.00 3.66
458 561 1.343789 TCATTGTTGTTGGTGCCATGG 59.656 47.619 7.63 7.63 0.00 3.66
459 562 1.070445 CATTGTTGTTGGTGCCATGGT 59.930 47.619 14.67 0.00 0.00 3.55
462 565 1.959985 TGTTGTTGGTGCCATGGTTAG 59.040 47.619 14.67 0.00 0.00 2.34
463 566 1.272212 GTTGTTGGTGCCATGGTTAGG 59.728 52.381 14.67 0.00 0.00 2.69
477 580 7.346751 CCATGGTTAGGCAATTAATACACTT 57.653 36.000 2.57 0.00 0.00 3.16
478 581 7.425606 CCATGGTTAGGCAATTAATACACTTC 58.574 38.462 2.57 0.00 0.00 3.01
479 582 7.068103 CCATGGTTAGGCAATTAATACACTTCA 59.932 37.037 2.57 0.00 0.00 3.02
480 583 8.632679 CATGGTTAGGCAATTAATACACTTCAT 58.367 33.333 0.00 0.00 0.00 2.57
481 584 7.995289 TGGTTAGGCAATTAATACACTTCATG 58.005 34.615 0.00 0.00 0.00 3.07
482 585 7.613801 TGGTTAGGCAATTAATACACTTCATGT 59.386 33.333 0.00 0.00 46.06 3.21
483 586 8.466798 GGTTAGGCAATTAATACACTTCATGTT 58.533 33.333 0.00 0.00 43.19 2.71
485 588 9.853555 TTAGGCAATTAATACACTTCATGTTTG 57.146 29.630 0.00 0.00 43.19 2.93
486 589 6.813152 AGGCAATTAATACACTTCATGTTTGC 59.187 34.615 5.30 5.30 44.20 3.68
487 590 6.813152 GGCAATTAATACACTTCATGTTTGCT 59.187 34.615 11.18 0.00 44.29 3.91
488 591 7.331687 GGCAATTAATACACTTCATGTTTGCTT 59.668 33.333 11.18 0.00 44.29 3.91
489 592 8.711457 GCAATTAATACACTTCATGTTTGCTTT 58.289 29.630 6.27 0.00 42.73 3.51
493 596 9.809096 TTAATACACTTCATGTTTGCTTTTTCA 57.191 25.926 0.00 0.00 43.19 2.69
494 597 8.891671 AATACACTTCATGTTTGCTTTTTCAT 57.108 26.923 0.00 0.00 43.19 2.57
495 598 8.891671 ATACACTTCATGTTTGCTTTTTCATT 57.108 26.923 0.00 0.00 43.19 2.57
496 599 7.007313 ACACTTCATGTTTGCTTTTTCATTG 57.993 32.000 0.00 0.00 38.98 2.82
497 600 6.037391 ACACTTCATGTTTGCTTTTTCATTGG 59.963 34.615 0.00 0.00 38.98 3.16
498 601 5.007921 ACTTCATGTTTGCTTTTTCATTGGC 59.992 36.000 0.00 0.00 0.00 4.52
499 602 4.706035 TCATGTTTGCTTTTTCATTGGCT 58.294 34.783 0.00 0.00 0.00 4.75
500 603 4.512198 TCATGTTTGCTTTTTCATTGGCTG 59.488 37.500 0.00 0.00 0.00 4.85
501 604 2.613133 TGTTTGCTTTTTCATTGGCTGC 59.387 40.909 0.00 0.00 0.00 5.25
502 605 2.613133 GTTTGCTTTTTCATTGGCTGCA 59.387 40.909 0.50 0.00 0.00 4.41
503 606 2.843401 TGCTTTTTCATTGGCTGCAT 57.157 40.000 0.50 0.00 0.00 3.96
504 607 2.418692 TGCTTTTTCATTGGCTGCATG 58.581 42.857 0.50 0.00 0.00 4.06
505 608 1.129811 GCTTTTTCATTGGCTGCATGC 59.870 47.619 11.82 11.82 41.94 4.06
506 609 2.418692 CTTTTTCATTGGCTGCATGCA 58.581 42.857 21.29 21.29 45.15 3.96
507 610 2.772077 TTTTCATTGGCTGCATGCAT 57.228 40.000 22.97 2.13 45.15 3.96
508 611 2.017138 TTTCATTGGCTGCATGCATG 57.983 45.000 22.97 22.70 45.15 4.06
509 612 0.899019 TTCATTGGCTGCATGCATGT 59.101 45.000 26.79 3.11 45.15 3.21
510 613 0.174617 TCATTGGCTGCATGCATGTG 59.825 50.000 26.79 20.03 45.15 3.21
511 614 0.174617 CATTGGCTGCATGCATGTGA 59.825 50.000 26.79 13.57 45.15 3.58
512 615 0.459899 ATTGGCTGCATGCATGTGAG 59.540 50.000 26.79 22.09 45.15 3.51
513 616 0.609681 TTGGCTGCATGCATGTGAGA 60.610 50.000 26.79 8.79 45.15 3.27
514 617 1.029947 TGGCTGCATGCATGTGAGAG 61.030 55.000 26.79 17.66 45.15 3.20
515 618 0.746923 GGCTGCATGCATGTGAGAGA 60.747 55.000 26.79 4.82 45.15 3.10
516 619 0.658368 GCTGCATGCATGTGAGAGAG 59.342 55.000 26.79 7.15 42.31 3.20
517 620 2.012554 GCTGCATGCATGTGAGAGAGT 61.013 52.381 26.79 0.00 42.31 3.24
518 621 1.666189 CTGCATGCATGTGAGAGAGTG 59.334 52.381 26.79 0.21 0.00 3.51
519 622 0.377554 GCATGCATGTGAGAGAGTGC 59.622 55.000 26.79 7.20 38.05 4.40
522 625 2.484742 TGCATGTGAGAGAGTGCATT 57.515 45.000 0.00 0.00 42.13 3.56
523 626 2.081462 TGCATGTGAGAGAGTGCATTG 58.919 47.619 0.00 0.00 42.13 2.82
524 627 1.400846 GCATGTGAGAGAGTGCATTGG 59.599 52.381 0.00 0.00 37.52 3.16
525 628 2.014857 CATGTGAGAGAGTGCATTGGG 58.985 52.381 0.00 0.00 0.00 4.12
526 629 1.351076 TGTGAGAGAGTGCATTGGGA 58.649 50.000 0.00 0.00 0.00 4.37
527 630 1.277273 TGTGAGAGAGTGCATTGGGAG 59.723 52.381 0.00 0.00 0.00 4.30
528 631 1.277557 GTGAGAGAGTGCATTGGGAGT 59.722 52.381 0.00 0.00 0.00 3.85
529 632 1.277273 TGAGAGAGTGCATTGGGAGTG 59.723 52.381 0.00 0.00 0.00 3.51
530 633 1.552337 GAGAGAGTGCATTGGGAGTGA 59.448 52.381 0.00 0.00 0.00 3.41
531 634 1.980765 AGAGAGTGCATTGGGAGTGAA 59.019 47.619 0.00 0.00 0.00 3.18
532 635 2.373169 AGAGAGTGCATTGGGAGTGAAA 59.627 45.455 0.00 0.00 0.00 2.69
533 636 3.009916 AGAGAGTGCATTGGGAGTGAAAT 59.990 43.478 0.00 0.00 0.00 2.17
534 637 4.225942 AGAGAGTGCATTGGGAGTGAAATA 59.774 41.667 0.00 0.00 0.00 1.40
535 638 4.922206 AGAGTGCATTGGGAGTGAAATAA 58.078 39.130 0.00 0.00 0.00 1.40
536 639 5.324409 AGAGTGCATTGGGAGTGAAATAAA 58.676 37.500 0.00 0.00 0.00 1.40
537 640 5.774690 AGAGTGCATTGGGAGTGAAATAAAA 59.225 36.000 0.00 0.00 0.00 1.52
538 641 6.029346 AGTGCATTGGGAGTGAAATAAAAG 57.971 37.500 0.00 0.00 0.00 2.27
539 642 5.774690 AGTGCATTGGGAGTGAAATAAAAGA 59.225 36.000 0.00 0.00 0.00 2.52
540 643 6.267471 AGTGCATTGGGAGTGAAATAAAAGAA 59.733 34.615 0.00 0.00 0.00 2.52
541 644 7.038799 AGTGCATTGGGAGTGAAATAAAAGAAT 60.039 33.333 0.00 0.00 0.00 2.40
542 645 7.603784 GTGCATTGGGAGTGAAATAAAAGAATT 59.396 33.333 0.00 0.00 0.00 2.17
543 646 8.811017 TGCATTGGGAGTGAAATAAAAGAATTA 58.189 29.630 0.00 0.00 0.00 1.40
544 647 9.651913 GCATTGGGAGTGAAATAAAAGAATTAA 57.348 29.630 0.00 0.00 0.00 1.40
567 670 7.928307 AATGTGAGCAAATTACTATGTGTCT 57.072 32.000 0.00 0.00 0.00 3.41
568 671 7.928307 ATGTGAGCAAATTACTATGTGTCTT 57.072 32.000 0.00 0.00 0.00 3.01
569 672 7.132694 TGTGAGCAAATTACTATGTGTCTTG 57.867 36.000 0.00 0.00 0.00 3.02
570 673 6.149308 TGTGAGCAAATTACTATGTGTCTTGG 59.851 38.462 0.00 0.00 0.00 3.61
571 674 6.149474 GTGAGCAAATTACTATGTGTCTTGGT 59.851 38.462 0.00 0.00 0.00 3.67
572 675 6.371548 TGAGCAAATTACTATGTGTCTTGGTC 59.628 38.462 0.00 0.00 38.90 4.02
573 676 6.476378 AGCAAATTACTATGTGTCTTGGTCT 58.524 36.000 0.00 0.00 0.00 3.85
574 677 7.620880 AGCAAATTACTATGTGTCTTGGTCTA 58.379 34.615 0.00 0.00 0.00 2.59
575 678 8.100791 AGCAAATTACTATGTGTCTTGGTCTAA 58.899 33.333 0.00 0.00 0.00 2.10
576 679 8.726988 GCAAATTACTATGTGTCTTGGTCTAAA 58.273 33.333 0.00 0.00 0.00 1.85
581 684 9.706691 TTACTATGTGTCTTGGTCTAAAAGAAG 57.293 33.333 0.00 0.00 35.50 2.85
582 685 7.736893 ACTATGTGTCTTGGTCTAAAAGAAGT 58.263 34.615 0.00 0.00 35.50 3.01
583 686 8.211629 ACTATGTGTCTTGGTCTAAAAGAAGTT 58.788 33.333 0.00 0.00 35.50 2.66
584 687 6.677781 TGTGTCTTGGTCTAAAAGAAGTTG 57.322 37.500 0.00 0.00 35.50 3.16
585 688 6.177610 TGTGTCTTGGTCTAAAAGAAGTTGT 58.822 36.000 0.00 0.00 35.50 3.32
586 689 6.315393 TGTGTCTTGGTCTAAAAGAAGTTGTC 59.685 38.462 0.00 0.00 35.50 3.18
587 690 6.539103 GTGTCTTGGTCTAAAAGAAGTTGTCT 59.461 38.462 0.00 0.00 35.50 3.41
623 726 1.307097 CGGACGGAGGGAGTAACTAG 58.693 60.000 0.00 0.00 0.00 2.57
649 752 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
723 826 6.382087 ACATAGATGTTCCTACCCACTATGA 58.618 40.000 1.97 0.00 37.90 2.15
789 899 1.281867 TCATTGTGACCAGCCTTAGGG 59.718 52.381 0.00 0.00 0.00 3.53
790 900 1.281867 CATTGTGACCAGCCTTAGGGA 59.718 52.381 0.00 0.00 33.58 4.20
791 901 0.690762 TTGTGACCAGCCTTAGGGAC 59.309 55.000 0.00 0.00 33.58 4.46
792 902 0.178903 TGTGACCAGCCTTAGGGACT 60.179 55.000 0.00 0.00 46.37 3.85
793 903 0.984995 GTGACCAGCCTTAGGGACTT 59.015 55.000 0.00 0.00 41.75 3.01
794 904 1.351350 GTGACCAGCCTTAGGGACTTT 59.649 52.381 0.00 0.00 41.75 2.66
795 905 2.062636 TGACCAGCCTTAGGGACTTTT 58.937 47.619 0.00 0.00 41.75 2.27
796 906 2.445525 TGACCAGCCTTAGGGACTTTTT 59.554 45.455 0.00 0.00 41.75 1.94
797 907 3.082548 GACCAGCCTTAGGGACTTTTTC 58.917 50.000 0.00 0.00 41.75 2.29
798 908 2.716969 ACCAGCCTTAGGGACTTTTTCT 59.283 45.455 0.00 0.00 41.75 2.52
799 909 3.914435 ACCAGCCTTAGGGACTTTTTCTA 59.086 43.478 0.00 0.00 41.75 2.10
800 910 4.352893 ACCAGCCTTAGGGACTTTTTCTAA 59.647 41.667 0.00 0.00 41.75 2.10
801 911 5.015284 ACCAGCCTTAGGGACTTTTTCTAAT 59.985 40.000 0.00 0.00 41.75 1.73
802 912 5.590663 CCAGCCTTAGGGACTTTTTCTAATC 59.409 44.000 0.00 0.00 41.75 1.75
803 913 6.418946 CAGCCTTAGGGACTTTTTCTAATCT 58.581 40.000 0.00 0.00 41.75 2.40
804 914 6.540551 CAGCCTTAGGGACTTTTTCTAATCTC 59.459 42.308 0.00 0.00 41.75 2.75
805 915 6.445462 AGCCTTAGGGACTTTTTCTAATCTCT 59.555 38.462 0.00 0.00 41.75 3.10
806 916 7.624077 AGCCTTAGGGACTTTTTCTAATCTCTA 59.376 37.037 0.00 0.00 41.75 2.43
807 917 7.929245 GCCTTAGGGACTTTTTCTAATCTCTAG 59.071 40.741 0.00 0.00 41.75 2.43
808 918 9.203163 CCTTAGGGACTTTTTCTAATCTCTAGA 57.797 37.037 0.00 0.00 41.75 2.43
810 920 9.771140 TTAGGGACTTTTTCTAATCTCTAGACT 57.229 33.333 0.00 0.00 41.75 3.24
812 922 9.771140 AGGGACTTTTTCTAATCTCTAGACTAA 57.229 33.333 0.00 0.00 27.25 2.24
821 931 7.705214 TCTAATCTCTAGACTAAAAAGTCCGC 58.295 38.462 2.00 0.00 39.50 5.54
822 932 5.916661 ATCTCTAGACTAAAAAGTCCGCA 57.083 39.130 2.00 0.00 39.50 5.69
823 933 5.056894 TCTCTAGACTAAAAAGTCCGCAC 57.943 43.478 2.00 0.00 39.50 5.34
824 934 4.082354 TCTCTAGACTAAAAAGTCCGCACC 60.082 45.833 2.00 0.00 39.50 5.01
825 935 2.180432 AGACTAAAAAGTCCGCACCC 57.820 50.000 2.00 0.00 39.50 4.61
826 936 1.162698 GACTAAAAAGTCCGCACCCC 58.837 55.000 0.00 0.00 32.97 4.95
827 937 0.251033 ACTAAAAAGTCCGCACCCCC 60.251 55.000 0.00 0.00 0.00 5.40
993 1118 4.021925 AACCTCCCACTGCCTCGC 62.022 66.667 0.00 0.00 0.00 5.03
995 1120 2.759973 CCTCCCACTGCCTCGCTA 60.760 66.667 0.00 0.00 0.00 4.26
996 1121 2.359169 CCTCCCACTGCCTCGCTAA 61.359 63.158 0.00 0.00 0.00 3.09
997 1122 1.690219 CCTCCCACTGCCTCGCTAAT 61.690 60.000 0.00 0.00 0.00 1.73
998 1123 0.249657 CTCCCACTGCCTCGCTAATC 60.250 60.000 0.00 0.00 0.00 1.75
999 1124 1.592669 CCCACTGCCTCGCTAATCG 60.593 63.158 0.00 0.00 40.15 3.34
1010 1135 3.418094 CTCGCTAATCGCTATAACTCCG 58.582 50.000 0.00 0.00 38.27 4.63
1544 1678 1.217183 AGCCTGTCGGATAGGAACCTA 59.783 52.381 23.26 2.93 37.52 3.08
2006 2140 4.203076 GCCATCGGCTCGTACGGT 62.203 66.667 16.52 0.00 46.69 4.83
2168 2302 4.451150 GACGGGAGGCGCATGTCA 62.451 66.667 10.83 0.00 0.00 3.58
2171 2305 4.864334 GGGAGGCGCATGTCAGGG 62.864 72.222 10.83 0.00 0.00 4.45
2522 2656 1.209127 CCCGACCGCAACAATTGTC 59.791 57.895 12.39 0.00 0.00 3.18
3107 3241 1.409427 CTGAACTACCCGTCCATCTCC 59.591 57.143 0.00 0.00 0.00 3.71
3265 3399 3.060615 CGTCTTCTCCCCGTCCGT 61.061 66.667 0.00 0.00 0.00 4.69
3458 3613 2.709475 GCGGTTGCGATAAGGCAG 59.291 61.111 0.00 0.00 44.94 4.85
3459 3614 2.106683 GCGGTTGCGATAAGGCAGT 61.107 57.895 0.00 0.00 44.94 4.40
3460 3615 1.715585 CGGTTGCGATAAGGCAGTG 59.284 57.895 0.00 0.00 44.94 3.66
3461 3616 1.705337 CGGTTGCGATAAGGCAGTGG 61.705 60.000 0.00 0.00 44.94 4.00
3462 3617 1.376609 GGTTGCGATAAGGCAGTGGG 61.377 60.000 0.00 0.00 44.94 4.61
3463 3618 1.748879 TTGCGATAAGGCAGTGGGC 60.749 57.895 0.00 0.00 44.94 5.36
3464 3619 3.272334 GCGATAAGGCAGTGGGCG 61.272 66.667 0.00 0.00 46.16 6.13
3465 3620 2.186903 CGATAAGGCAGTGGGCGT 59.813 61.111 0.00 0.00 46.16 5.68
3466 3621 1.883084 CGATAAGGCAGTGGGCGTC 60.883 63.158 0.00 0.00 46.16 5.19
3467 3622 1.883084 GATAAGGCAGTGGGCGTCG 60.883 63.158 0.00 0.00 46.16 5.12
3468 3623 3.385749 ATAAGGCAGTGGGCGTCGG 62.386 63.158 0.00 0.00 46.16 4.79
3525 3680 3.614698 TAACGGTTGCGGTCGGGT 61.615 61.111 3.07 0.00 0.00 5.28
3526 3681 3.162505 TAACGGTTGCGGTCGGGTT 62.163 57.895 3.07 0.00 0.00 4.11
3527 3682 2.657102 TAACGGTTGCGGTCGGGTTT 62.657 55.000 3.07 0.00 0.00 3.27
3582 3737 6.944290 AGTTTAATTACGTAGGGCCTTTTTCT 59.056 34.615 13.45 0.00 0.00 2.52
3589 3744 0.897401 AGGGCCTTTTTCTCTGCTGC 60.897 55.000 0.00 0.00 0.00 5.25
3599 3754 6.441093 TTTTTCTCTGCTGCGATTGATTAT 57.559 33.333 0.00 0.00 0.00 1.28
3600 3755 6.441093 TTTTCTCTGCTGCGATTGATTATT 57.559 33.333 0.00 0.00 0.00 1.40
3602 3757 7.552458 TTTCTCTGCTGCGATTGATTATTAA 57.448 32.000 0.00 0.00 0.00 1.40
3621 3777 2.907897 AAGCGCGGGCAGTGAGATAC 62.908 60.000 27.20 0.00 43.41 2.24
3623 3779 1.299468 CGCGGGCAGTGAGATACTC 60.299 63.158 0.00 0.00 37.60 2.59
3728 3891 2.908688 AGGGCCAAACATGACAAAAC 57.091 45.000 6.18 0.00 0.00 2.43
3745 3908 8.246430 TGACAAAACCGGAGATATTCTAGTAT 57.754 34.615 9.46 0.00 0.00 2.12
3747 3910 8.888579 ACAAAACCGGAGATATTCTAGTATTG 57.111 34.615 9.46 0.00 0.00 1.90
3785 3963 5.324697 GTGTAACTTTTATGTAGCAGCTGC 58.675 41.667 31.53 31.53 42.49 5.25
3828 4006 1.930567 AACGCGACTGTTGTTACTGT 58.069 45.000 15.93 0.00 38.91 3.55
3830 4008 3.293311 ACGCGACTGTTGTTACTGTAT 57.707 42.857 15.93 0.00 36.68 2.29
3831 4009 3.645884 ACGCGACTGTTGTTACTGTATT 58.354 40.909 15.93 0.00 36.68 1.89
3832 4010 3.427528 ACGCGACTGTTGTTACTGTATTG 59.572 43.478 15.93 0.00 36.68 1.90
3833 4011 3.671459 CGCGACTGTTGTTACTGTATTGA 59.329 43.478 0.00 0.00 36.68 2.57
3834 4012 4.432503 CGCGACTGTTGTTACTGTATTGAC 60.433 45.833 0.00 0.00 36.68 3.18
3835 4013 4.684703 GCGACTGTTGTTACTGTATTGACT 59.315 41.667 0.00 0.00 36.68 3.41
3836 4014 5.860182 GCGACTGTTGTTACTGTATTGACTA 59.140 40.000 0.00 0.00 36.68 2.59
3837 4015 6.364165 GCGACTGTTGTTACTGTATTGACTAA 59.636 38.462 0.00 0.00 36.68 2.24
3838 4016 7.063074 GCGACTGTTGTTACTGTATTGACTAAT 59.937 37.037 0.00 0.00 36.68 1.73
3839 4017 8.373256 CGACTGTTGTTACTGTATTGACTAATG 58.627 37.037 0.00 0.00 36.68 1.90
3840 4018 9.419297 GACTGTTGTTACTGTATTGACTAATGA 57.581 33.333 0.00 0.00 36.68 2.57
3841 4019 9.204570 ACTGTTGTTACTGTATTGACTAATGAC 57.795 33.333 0.00 0.00 35.03 3.06
3842 4020 9.424319 CTGTTGTTACTGTATTGACTAATGACT 57.576 33.333 0.00 0.00 0.00 3.41
3843 4021 9.419297 TGTTGTTACTGTATTGACTAATGACTC 57.581 33.333 0.00 0.00 0.00 3.36
3844 4022 8.584600 GTTGTTACTGTATTGACTAATGACTCG 58.415 37.037 0.00 0.00 0.00 4.18
3845 4023 6.750501 TGTTACTGTATTGACTAATGACTCGC 59.249 38.462 0.00 0.00 0.00 5.03
3846 4024 5.584253 ACTGTATTGACTAATGACTCGCT 57.416 39.130 0.00 0.00 0.00 4.93
3847 4025 5.344066 ACTGTATTGACTAATGACTCGCTG 58.656 41.667 0.00 0.00 0.00 5.18
3848 4026 4.682787 TGTATTGACTAATGACTCGCTGG 58.317 43.478 0.00 0.00 0.00 4.85
3849 4027 3.895232 ATTGACTAATGACTCGCTGGT 57.105 42.857 0.00 0.00 0.00 4.00
3850 4028 2.941453 TGACTAATGACTCGCTGGTC 57.059 50.000 0.00 0.00 36.81 4.02
3852 4030 2.094700 TGACTAATGACTCGCTGGTCAC 60.095 50.000 10.08 0.42 46.93 3.67
3853 4031 2.164624 GACTAATGACTCGCTGGTCACT 59.835 50.000 10.08 3.52 46.93 3.41
3854 4032 2.563179 ACTAATGACTCGCTGGTCACTT 59.437 45.455 10.08 8.73 46.93 3.16
3855 4033 2.086054 AATGACTCGCTGGTCACTTC 57.914 50.000 10.08 0.00 46.93 3.01
3856 4034 1.261480 ATGACTCGCTGGTCACTTCT 58.739 50.000 10.08 0.00 46.93 2.85
3857 4035 0.315251 TGACTCGCTGGTCACTTCTG 59.685 55.000 4.82 0.00 40.72 3.02
3858 4036 1.005630 ACTCGCTGGTCACTTCTGC 60.006 57.895 0.00 0.00 0.00 4.26
3859 4037 1.005748 CTCGCTGGTCACTTCTGCA 60.006 57.895 0.00 0.00 0.00 4.41
3860 4038 0.390866 CTCGCTGGTCACTTCTGCAT 60.391 55.000 0.00 0.00 0.00 3.96
3861 4039 0.894835 TCGCTGGTCACTTCTGCATA 59.105 50.000 0.00 0.00 0.00 3.14
3862 4040 1.002366 CGCTGGTCACTTCTGCATAC 58.998 55.000 0.00 0.00 0.00 2.39
3863 4041 1.404717 CGCTGGTCACTTCTGCATACT 60.405 52.381 0.00 0.00 0.00 2.12
3864 4042 2.704572 GCTGGTCACTTCTGCATACTT 58.295 47.619 0.00 0.00 0.00 2.24
3865 4043 2.417933 GCTGGTCACTTCTGCATACTTG 59.582 50.000 0.00 0.00 0.00 3.16
3866 4044 3.668447 CTGGTCACTTCTGCATACTTGT 58.332 45.455 0.00 0.00 0.00 3.16
3867 4045 4.067896 CTGGTCACTTCTGCATACTTGTT 58.932 43.478 0.00 0.00 0.00 2.83
3868 4046 5.222079 TGGTCACTTCTGCATACTTGTTA 57.778 39.130 0.00 0.00 0.00 2.41
3869 4047 4.994852 TGGTCACTTCTGCATACTTGTTAC 59.005 41.667 0.00 0.00 0.00 2.50
3870 4048 5.221641 TGGTCACTTCTGCATACTTGTTACT 60.222 40.000 0.00 0.00 0.00 2.24
3871 4049 5.120830 GGTCACTTCTGCATACTTGTTACTG 59.879 44.000 0.00 0.00 0.00 2.74
3872 4050 5.696724 GTCACTTCTGCATACTTGTTACTGT 59.303 40.000 0.00 0.00 0.00 3.55
3873 4051 6.866770 GTCACTTCTGCATACTTGTTACTGTA 59.133 38.462 0.00 0.00 0.00 2.74
3874 4052 7.545965 GTCACTTCTGCATACTTGTTACTGTAT 59.454 37.037 0.00 0.00 0.00 2.29
3880 4058 8.745590 TCTGCATACTTGTTACTGTATTGACTA 58.254 33.333 0.00 0.00 0.00 2.59
3887 4065 9.640963 ACTTGTTACTGTATTGACTAATGACTC 57.359 33.333 0.00 0.00 0.00 3.36
3889 4067 6.750501 TGTTACTGTATTGACTAATGACTCGC 59.249 38.462 0.00 0.00 0.00 5.03
3893 4071 2.010145 TTGACTAATGACTCGCTGGC 57.990 50.000 0.00 0.00 0.00 4.85
3895 4073 0.175760 GACTAATGACTCGCTGGCCA 59.824 55.000 4.71 4.71 0.00 5.36
3909 4087 2.472909 GGCCAGTTCTGCATACGGC 61.473 63.158 18.05 18.05 45.13 5.68
3915 4093 1.202580 AGTTCTGCATACGGCCATCTC 60.203 52.381 2.24 0.00 43.89 2.75
3918 4096 1.154197 CTGCATACGGCCATCTCATG 58.846 55.000 2.24 0.00 43.89 3.07
3938 4116 5.936372 TCATGTTGGAGATCAAGAAACTCTG 59.064 40.000 0.00 0.00 35.80 3.35
3944 4122 4.934602 GGAGATCAAGAAACTCTGGACTTG 59.065 45.833 0.00 0.00 40.37 3.16
3952 4130 0.830444 ACTCTGGACTTGCGTGGGTA 60.830 55.000 0.00 0.00 0.00 3.69
3957 4135 3.199071 TCTGGACTTGCGTGGGTATATTT 59.801 43.478 0.00 0.00 0.00 1.40
3958 4136 4.406326 TCTGGACTTGCGTGGGTATATTTA 59.594 41.667 0.00 0.00 0.00 1.40
3959 4137 4.699637 TGGACTTGCGTGGGTATATTTAG 58.300 43.478 0.00 0.00 0.00 1.85
3961 4139 4.989168 GGACTTGCGTGGGTATATTTAGAG 59.011 45.833 0.00 0.00 0.00 2.43
3967 4171 5.121105 GCGTGGGTATATTTAGAGGTGTTT 58.879 41.667 0.00 0.00 0.00 2.83
4013 4224 3.002791 CTGATGATAACACTGGTTGCGT 58.997 45.455 0.00 0.00 37.88 5.24
4027 4238 2.964925 GCGTCGTGTGCCAGACAA 60.965 61.111 0.00 0.00 35.91 3.18
4039 4250 3.753272 GTGCCAGACAATGTTACTCATGT 59.247 43.478 0.00 0.00 36.81 3.21
4043 4254 5.411361 GCCAGACAATGTTACTCATGTTGTA 59.589 40.000 0.00 0.00 36.81 2.41
4049 4260 9.850628 GACAATGTTACTCATGTTGTACTAGTA 57.149 33.333 0.00 0.00 36.81 1.82
4086 4297 2.632987 AACCCACGTTAGAGCAACTT 57.367 45.000 0.00 0.00 34.77 2.66
4093 4304 3.745975 CACGTTAGAGCAACTTCAATGGA 59.254 43.478 0.00 0.00 34.77 3.41
4100 4311 1.813513 CAACTTCAATGGAGCGACCT 58.186 50.000 4.77 0.00 39.86 3.85
4110 4321 0.458669 GGAGCGACCTATTTCGTCCA 59.541 55.000 0.00 0.00 41.26 4.02
4146 4357 2.668550 GGCGCGGACAGAAAAGGT 60.669 61.111 8.83 0.00 0.00 3.50
4148 4359 2.251642 GCGCGGACAGAAAAGGTGT 61.252 57.895 8.83 0.00 0.00 4.16
4158 4369 1.441732 GAAAAGGTGTCCCAACGCGT 61.442 55.000 5.58 5.58 36.74 6.01
4191 4402 0.233590 CGCGTGTCCATTTTTCGTCA 59.766 50.000 0.00 0.00 0.00 4.35
4194 4405 1.399727 CGTGTCCATTTTTCGTCAGCC 60.400 52.381 0.00 0.00 0.00 4.85
4196 4407 1.153353 GTCCATTTTTCGTCAGCCGA 58.847 50.000 0.00 0.00 45.66 5.54
4226 4439 0.682855 CCGGGCCATTTTTGAGCCTA 60.683 55.000 4.39 0.00 46.31 3.93
4388 4606 4.370066 CGCCCATTTTTGCCGGCA 62.370 61.111 29.03 29.03 41.71 5.69
4427 4646 4.100084 TCCACATCCGCCCAGCAG 62.100 66.667 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.111384 GTGGCTTGACTCTGGATAGGA 58.889 52.381 0.00 0.00 0.00 2.94
1 2 2.114616 AGTGGCTTGACTCTGGATAGG 58.885 52.381 0.00 0.00 0.00 2.57
2 3 3.902881 AAGTGGCTTGACTCTGGATAG 57.097 47.619 0.00 0.00 0.00 2.08
3 4 3.582647 TCAAAGTGGCTTGACTCTGGATA 59.417 43.478 0.00 0.00 30.31 2.59
4 5 2.373169 TCAAAGTGGCTTGACTCTGGAT 59.627 45.455 0.00 0.00 30.31 3.41
6 7 2.260844 TCAAAGTGGCTTGACTCTGG 57.739 50.000 0.00 0.00 30.31 3.86
12 13 2.290367 CGTCATTGTCAAAGTGGCTTGA 59.710 45.455 0.00 0.00 32.89 3.02
13 14 2.653890 CGTCATTGTCAAAGTGGCTTG 58.346 47.619 0.00 0.00 0.00 4.01
14 15 1.001378 GCGTCATTGTCAAAGTGGCTT 60.001 47.619 0.00 0.00 0.00 4.35
15 16 0.593128 GCGTCATTGTCAAAGTGGCT 59.407 50.000 0.00 0.00 0.00 4.75
16 17 0.593128 AGCGTCATTGTCAAAGTGGC 59.407 50.000 0.00 0.00 0.00 5.01
17 18 2.159841 CGTAGCGTCATTGTCAAAGTGG 60.160 50.000 0.00 0.00 0.00 4.00
18 19 2.159841 CCGTAGCGTCATTGTCAAAGTG 60.160 50.000 0.00 0.00 0.00 3.16
19 20 2.066262 CCGTAGCGTCATTGTCAAAGT 58.934 47.619 0.00 0.00 0.00 2.66
20 21 2.066262 ACCGTAGCGTCATTGTCAAAG 58.934 47.619 0.00 0.00 0.00 2.77
21 22 2.157834 ACCGTAGCGTCATTGTCAAA 57.842 45.000 0.00 0.00 0.00 2.69
22 23 2.030096 TGTACCGTAGCGTCATTGTCAA 60.030 45.455 0.00 0.00 0.00 3.18
23 24 1.540707 TGTACCGTAGCGTCATTGTCA 59.459 47.619 0.00 0.00 0.00 3.58
24 25 2.182825 CTGTACCGTAGCGTCATTGTC 58.817 52.381 0.00 0.00 0.00 3.18
25 26 1.734707 GCTGTACCGTAGCGTCATTGT 60.735 52.381 0.00 0.00 0.00 2.71
26 27 0.921347 GCTGTACCGTAGCGTCATTG 59.079 55.000 0.00 0.00 0.00 2.82
27 28 0.528924 TGCTGTACCGTAGCGTCATT 59.471 50.000 0.00 0.00 44.01 2.57
28 29 0.179145 GTGCTGTACCGTAGCGTCAT 60.179 55.000 0.00 0.00 44.01 3.06
29 30 1.210931 GTGCTGTACCGTAGCGTCA 59.789 57.895 0.00 0.00 44.01 4.35
30 31 0.522915 GAGTGCTGTACCGTAGCGTC 60.523 60.000 0.00 0.00 44.01 5.19
31 32 1.505353 GAGTGCTGTACCGTAGCGT 59.495 57.895 0.00 0.00 44.01 5.07
32 33 1.582937 CGAGTGCTGTACCGTAGCG 60.583 63.158 0.00 0.00 44.01 4.26
33 34 1.226603 CCGAGTGCTGTACCGTAGC 60.227 63.158 0.00 0.00 41.49 3.58
34 35 1.432251 CCCGAGTGCTGTACCGTAG 59.568 63.158 0.00 0.00 0.00 3.51
35 36 2.703798 GCCCGAGTGCTGTACCGTA 61.704 63.158 0.00 0.00 0.00 4.02
36 37 4.065281 GCCCGAGTGCTGTACCGT 62.065 66.667 0.00 0.00 0.00 4.83
38 39 4.814294 CCGCCCGAGTGCTGTACC 62.814 72.222 0.00 0.00 0.00 3.34
39 40 3.984200 GACCGCCCGAGTGCTGTAC 62.984 68.421 0.00 0.00 0.00 2.90
40 41 3.755628 GACCGCCCGAGTGCTGTA 61.756 66.667 0.00 0.00 0.00 2.74
53 54 2.016704 GAGTGTGAGCGTGTGACCG 61.017 63.158 0.00 0.00 0.00 4.79
54 55 2.016704 CGAGTGTGAGCGTGTGACC 61.017 63.158 0.00 0.00 0.00 4.02
55 56 1.269444 GACGAGTGTGAGCGTGTGAC 61.269 60.000 0.00 0.00 41.34 3.67
56 57 1.008881 GACGAGTGTGAGCGTGTGA 60.009 57.895 0.00 0.00 41.34 3.58
57 58 2.016704 GGACGAGTGTGAGCGTGTG 61.017 63.158 0.00 0.00 41.34 3.82
58 59 1.806461 ATGGACGAGTGTGAGCGTGT 61.806 55.000 0.00 0.00 41.34 4.49
59 60 1.073216 GATGGACGAGTGTGAGCGTG 61.073 60.000 0.00 0.00 41.34 5.34
60 61 1.213013 GATGGACGAGTGTGAGCGT 59.787 57.895 0.00 0.00 44.33 5.07
61 62 1.517257 GGATGGACGAGTGTGAGCG 60.517 63.158 0.00 0.00 0.00 5.03
62 63 0.737715 GTGGATGGACGAGTGTGAGC 60.738 60.000 0.00 0.00 0.00 4.26
63 64 0.603065 TGTGGATGGACGAGTGTGAG 59.397 55.000 0.00 0.00 0.00 3.51
64 65 0.317160 GTGTGGATGGACGAGTGTGA 59.683 55.000 0.00 0.00 0.00 3.58
65 66 0.670546 GGTGTGGATGGACGAGTGTG 60.671 60.000 0.00 0.00 0.00 3.82
66 67 1.671742 GGTGTGGATGGACGAGTGT 59.328 57.895 0.00 0.00 0.00 3.55
67 68 1.079127 GGGTGTGGATGGACGAGTG 60.079 63.158 0.00 0.00 0.00 3.51
68 69 1.125093 TTGGGTGTGGATGGACGAGT 61.125 55.000 0.00 0.00 0.00 4.18
69 70 0.673644 GTTGGGTGTGGATGGACGAG 60.674 60.000 0.00 0.00 0.00 4.18
70 71 1.373435 GTTGGGTGTGGATGGACGA 59.627 57.895 0.00 0.00 0.00 4.20
71 72 0.322456 ATGTTGGGTGTGGATGGACG 60.322 55.000 0.00 0.00 0.00 4.79
72 73 1.818674 GAATGTTGGGTGTGGATGGAC 59.181 52.381 0.00 0.00 0.00 4.02
73 74 1.426983 TGAATGTTGGGTGTGGATGGA 59.573 47.619 0.00 0.00 0.00 3.41
74 75 1.820519 CTGAATGTTGGGTGTGGATGG 59.179 52.381 0.00 0.00 0.00 3.51
75 76 1.820519 CCTGAATGTTGGGTGTGGATG 59.179 52.381 0.00 0.00 0.00 3.51
76 77 1.428912 ACCTGAATGTTGGGTGTGGAT 59.571 47.619 0.00 0.00 31.48 3.41
77 78 0.850100 ACCTGAATGTTGGGTGTGGA 59.150 50.000 0.00 0.00 31.48 4.02
78 79 0.961019 CACCTGAATGTTGGGTGTGG 59.039 55.000 0.00 0.00 43.72 4.17
79 80 0.961019 CCACCTGAATGTTGGGTGTG 59.039 55.000 9.93 0.00 46.30 3.82
80 81 0.555769 ACCACCTGAATGTTGGGTGT 59.444 50.000 9.93 0.00 46.30 4.16
82 83 0.555769 ACACCACCTGAATGTTGGGT 59.444 50.000 0.00 0.00 0.00 4.51
83 84 1.703411 AACACCACCTGAATGTTGGG 58.297 50.000 0.00 0.00 35.28 4.12
84 85 2.224018 CCAAACACCACCTGAATGTTGG 60.224 50.000 0.00 0.00 36.69 3.77
85 86 2.430332 ACCAAACACCACCTGAATGTTG 59.570 45.455 0.00 0.00 36.69 3.33
86 87 2.745968 ACCAAACACCACCTGAATGTT 58.254 42.857 0.00 0.00 38.18 2.71
87 88 2.430332 CAACCAAACACCACCTGAATGT 59.570 45.455 0.00 0.00 0.00 2.71
88 89 2.692557 TCAACCAAACACCACCTGAATG 59.307 45.455 0.00 0.00 0.00 2.67
89 90 2.958355 CTCAACCAAACACCACCTGAAT 59.042 45.455 0.00 0.00 0.00 2.57
90 91 2.025793 TCTCAACCAAACACCACCTGAA 60.026 45.455 0.00 0.00 0.00 3.02
91 92 1.562008 TCTCAACCAAACACCACCTGA 59.438 47.619 0.00 0.00 0.00 3.86
92 93 2.051334 TCTCAACCAAACACCACCTG 57.949 50.000 0.00 0.00 0.00 4.00
93 94 2.025321 ACTTCTCAACCAAACACCACCT 60.025 45.455 0.00 0.00 0.00 4.00
94 95 2.357952 GACTTCTCAACCAAACACCACC 59.642 50.000 0.00 0.00 0.00 4.61
95 96 3.279434 AGACTTCTCAACCAAACACCAC 58.721 45.455 0.00 0.00 0.00 4.16
96 97 3.644966 AGACTTCTCAACCAAACACCA 57.355 42.857 0.00 0.00 0.00 4.17
97 98 4.515567 CCTAAGACTTCTCAACCAAACACC 59.484 45.833 0.00 0.00 0.00 4.16
98 99 5.236695 GTCCTAAGACTTCTCAACCAAACAC 59.763 44.000 0.00 0.00 40.10 3.32
99 100 5.365619 GTCCTAAGACTTCTCAACCAAACA 58.634 41.667 0.00 0.00 40.10 2.83
100 101 5.926214 GTCCTAAGACTTCTCAACCAAAC 57.074 43.478 0.00 0.00 40.10 2.93
113 114 7.317390 CCTGAGACTAGAAAAAGTCCTAAGAC 58.683 42.308 0.00 0.00 45.86 3.01
114 115 6.437793 CCCTGAGACTAGAAAAAGTCCTAAGA 59.562 42.308 0.00 0.00 45.86 2.10
115 116 6.437793 TCCCTGAGACTAGAAAAAGTCCTAAG 59.562 42.308 0.00 0.00 45.86 2.18
116 117 6.210984 GTCCCTGAGACTAGAAAAAGTCCTAA 59.789 42.308 0.00 0.00 45.86 2.69
117 118 5.715753 GTCCCTGAGACTAGAAAAAGTCCTA 59.284 44.000 0.00 0.00 45.86 2.94
118 119 4.528987 GTCCCTGAGACTAGAAAAAGTCCT 59.471 45.833 0.00 0.00 45.86 3.85
119 120 4.823157 GTCCCTGAGACTAGAAAAAGTCC 58.177 47.826 0.00 0.00 45.86 3.85
188 189 5.804639 AGAAACCAAGCAAAAAGGACTTTT 58.195 33.333 4.29 4.29 43.88 2.27
189 190 5.420725 AGAAACCAAGCAAAAAGGACTTT 57.579 34.783 0.00 0.00 0.00 2.66
190 191 5.069119 CCTAGAAACCAAGCAAAAAGGACTT 59.931 40.000 0.00 0.00 0.00 3.01
191 192 4.584743 CCTAGAAACCAAGCAAAAAGGACT 59.415 41.667 0.00 0.00 0.00 3.85
192 193 4.583073 TCCTAGAAACCAAGCAAAAAGGAC 59.417 41.667 0.00 0.00 0.00 3.85
193 194 4.798882 TCCTAGAAACCAAGCAAAAAGGA 58.201 39.130 0.00 0.00 0.00 3.36
194 195 5.529581 TTCCTAGAAACCAAGCAAAAAGG 57.470 39.130 0.00 0.00 0.00 3.11
195 196 8.437360 AAAATTCCTAGAAACCAAGCAAAAAG 57.563 30.769 0.00 0.00 0.00 2.27
196 197 8.800370 AAAAATTCCTAGAAACCAAGCAAAAA 57.200 26.923 0.00 0.00 0.00 1.94
218 219 2.896685 CCCATTGTGACCAGCCTAAAAA 59.103 45.455 0.00 0.00 0.00 1.94
219 220 2.524306 CCCATTGTGACCAGCCTAAAA 58.476 47.619 0.00 0.00 0.00 1.52
220 221 1.272425 CCCCATTGTGACCAGCCTAAA 60.272 52.381 0.00 0.00 0.00 1.85
221 222 0.331278 CCCCATTGTGACCAGCCTAA 59.669 55.000 0.00 0.00 0.00 2.69
222 223 0.548926 TCCCCATTGTGACCAGCCTA 60.549 55.000 0.00 0.00 0.00 3.93
268 269 7.093988 TGTGCCACATAAGCAAAGTTGTATTAT 60.094 33.333 0.00 0.00 43.02 1.28
269 270 6.207614 TGTGCCACATAAGCAAAGTTGTATTA 59.792 34.615 0.00 0.00 43.02 0.98
308 309 1.348036 GGAGTACCACAAGCACCTCTT 59.652 52.381 0.00 0.00 35.97 2.85
309 310 0.977395 GGAGTACCACAAGCACCTCT 59.023 55.000 0.00 0.00 35.97 3.69
332 333 0.466963 AGGCCTAATAAACCCGGACG 59.533 55.000 1.29 0.00 0.00 4.79
352 353 2.939103 GGGACATGCTTGTAGTGCTAAG 59.061 50.000 5.05 0.00 35.79 2.18
353 354 2.571653 AGGGACATGCTTGTAGTGCTAA 59.428 45.455 5.05 0.00 35.79 3.09
354 355 2.187958 AGGGACATGCTTGTAGTGCTA 58.812 47.619 5.05 0.00 35.79 3.49
355 356 0.987294 AGGGACATGCTTGTAGTGCT 59.013 50.000 5.05 0.00 35.79 4.40
356 357 1.826385 AAGGGACATGCTTGTAGTGC 58.174 50.000 5.05 0.00 35.79 4.40
359 360 7.682021 GCCTTATAAAAAGGGACATGCTTGTAG 60.682 40.741 5.05 0.00 37.88 2.74
360 361 6.096282 GCCTTATAAAAAGGGACATGCTTGTA 59.904 38.462 5.05 0.00 37.88 2.41
361 362 5.105351 GCCTTATAAAAAGGGACATGCTTGT 60.105 40.000 4.68 4.68 37.88 3.16
362 363 5.351458 GCCTTATAAAAAGGGACATGCTTG 58.649 41.667 5.96 0.00 37.88 4.01
363 364 4.405680 GGCCTTATAAAAAGGGACATGCTT 59.594 41.667 0.00 0.00 37.88 3.91
364 365 3.960755 GGCCTTATAAAAAGGGACATGCT 59.039 43.478 0.00 0.00 37.88 3.79
365 366 3.960755 AGGCCTTATAAAAAGGGACATGC 59.039 43.478 0.00 0.00 37.88 4.06
366 367 4.275936 CGAGGCCTTATAAAAAGGGACATG 59.724 45.833 6.77 0.00 37.88 3.21
367 368 4.461198 CGAGGCCTTATAAAAAGGGACAT 58.539 43.478 6.77 0.00 37.88 3.06
368 369 3.881220 CGAGGCCTTATAAAAAGGGACA 58.119 45.455 6.77 0.00 37.88 4.02
370 371 2.508300 AGCGAGGCCTTATAAAAAGGGA 59.492 45.455 6.77 0.00 37.88 4.20
373 374 4.398044 TCCAAAGCGAGGCCTTATAAAAAG 59.602 41.667 6.77 0.00 0.00 2.27
374 375 4.337145 TCCAAAGCGAGGCCTTATAAAAA 58.663 39.130 6.77 0.00 0.00 1.94
375 376 3.958018 TCCAAAGCGAGGCCTTATAAAA 58.042 40.909 6.77 0.00 0.00 1.52
376 377 3.637911 TCCAAAGCGAGGCCTTATAAA 57.362 42.857 6.77 0.00 0.00 1.40
377 378 3.637911 TTCCAAAGCGAGGCCTTATAA 57.362 42.857 6.77 0.00 0.00 0.98
378 379 3.199071 TCTTTCCAAAGCGAGGCCTTATA 59.801 43.478 6.77 0.00 35.99 0.98
379 380 2.026262 TCTTTCCAAAGCGAGGCCTTAT 60.026 45.455 6.77 0.00 35.99 1.73
380 381 1.349688 TCTTTCCAAAGCGAGGCCTTA 59.650 47.619 6.77 0.00 35.99 2.69
381 382 0.110486 TCTTTCCAAAGCGAGGCCTT 59.890 50.000 6.77 0.00 35.99 4.35
383 384 0.453390 CATCTTTCCAAAGCGAGGCC 59.547 55.000 0.00 0.00 35.99 5.19
384 385 0.179153 GCATCTTTCCAAAGCGAGGC 60.179 55.000 0.00 0.00 35.99 4.70
385 386 1.167851 TGCATCTTTCCAAAGCGAGG 58.832 50.000 0.00 0.00 35.99 4.63
386 387 2.793933 CATGCATCTTTCCAAAGCGAG 58.206 47.619 0.00 0.00 35.99 5.03
388 389 1.274596 GCATGCATCTTTCCAAAGCG 58.725 50.000 14.21 0.00 35.99 4.68
389 390 2.373540 TGCATGCATCTTTCCAAAGC 57.626 45.000 18.46 0.00 35.99 3.51
402 403 6.495892 CCAATCAAATGGTTGCATGCATGC 62.496 45.833 38.71 38.71 43.53 4.06
404 405 3.275143 CCAATCAAATGGTTGCATGCAT 58.725 40.909 23.37 2.82 35.65 3.96
417 520 5.668471 TGACTTTCAATGCAACCAATCAAA 58.332 33.333 0.00 0.00 0.00 2.69
419 522 4.933505 TGACTTTCAATGCAACCAATCA 57.066 36.364 0.00 0.00 0.00 2.57
420 523 5.697633 ACAATGACTTTCAATGCAACCAATC 59.302 36.000 0.00 0.00 30.64 2.67
422 525 5.021033 ACAATGACTTTCAATGCAACCAA 57.979 34.783 0.00 0.00 30.64 3.67
432 535 3.430098 GGCACCAACAACAATGACTTTCA 60.430 43.478 0.00 0.00 0.00 2.69
433 536 3.123050 GGCACCAACAACAATGACTTTC 58.877 45.455 0.00 0.00 0.00 2.62
435 538 2.106566 TGGCACCAACAACAATGACTT 58.893 42.857 0.00 0.00 0.00 3.01
436 539 1.774110 TGGCACCAACAACAATGACT 58.226 45.000 0.00 0.00 0.00 3.41
437 540 2.406130 CATGGCACCAACAACAATGAC 58.594 47.619 0.00 0.00 0.00 3.06
438 541 1.343789 CCATGGCACCAACAACAATGA 59.656 47.619 0.00 0.00 0.00 2.57
443 546 1.272212 CCTAACCATGGCACCAACAAC 59.728 52.381 13.04 0.00 0.00 3.32
444 547 1.626686 CCTAACCATGGCACCAACAA 58.373 50.000 13.04 0.00 0.00 2.83
445 548 3.355077 CCTAACCATGGCACCAACA 57.645 52.632 13.04 0.00 0.00 3.33
453 556 6.959639 AGTGTATTAATTGCCTAACCATGG 57.040 37.500 11.19 11.19 0.00 3.66
454 557 7.995289 TGAAGTGTATTAATTGCCTAACCATG 58.005 34.615 0.00 0.00 0.00 3.66
455 558 8.632679 CATGAAGTGTATTAATTGCCTAACCAT 58.367 33.333 0.00 0.00 0.00 3.55
456 559 7.613801 ACATGAAGTGTATTAATTGCCTAACCA 59.386 33.333 0.00 0.00 39.91 3.67
457 560 7.996385 ACATGAAGTGTATTAATTGCCTAACC 58.004 34.615 0.00 0.00 39.91 2.85
458 561 9.855021 AAACATGAAGTGTATTAATTGCCTAAC 57.145 29.630 0.00 0.00 41.14 2.34
459 562 9.853555 CAAACATGAAGTGTATTAATTGCCTAA 57.146 29.630 0.00 0.00 41.14 2.69
462 565 6.813152 AGCAAACATGAAGTGTATTAATTGCC 59.187 34.615 0.00 0.00 44.67 4.52
463 566 7.816945 AGCAAACATGAAGTGTATTAATTGC 57.183 32.000 0.00 0.00 44.26 3.56
467 570 9.809096 TGAAAAAGCAAACATGAAGTGTATTAA 57.191 25.926 0.00 0.00 41.14 1.40
468 571 9.979578 ATGAAAAAGCAAACATGAAGTGTATTA 57.020 25.926 0.00 0.00 41.14 0.98
470 573 8.767085 CAATGAAAAAGCAAACATGAAGTGTAT 58.233 29.630 0.00 0.00 41.14 2.29
471 574 7.224362 CCAATGAAAAAGCAAACATGAAGTGTA 59.776 33.333 0.00 0.00 41.14 2.90
472 575 6.037391 CCAATGAAAAAGCAAACATGAAGTGT 59.963 34.615 0.00 0.00 44.84 3.55
473 576 6.423862 CCAATGAAAAAGCAAACATGAAGTG 58.576 36.000 0.00 0.00 0.00 3.16
474 577 5.007921 GCCAATGAAAAAGCAAACATGAAGT 59.992 36.000 0.00 0.00 0.00 3.01
475 578 5.237779 AGCCAATGAAAAAGCAAACATGAAG 59.762 36.000 0.00 0.00 0.00 3.02
477 580 4.512198 CAGCCAATGAAAAAGCAAACATGA 59.488 37.500 0.00 0.00 0.00 3.07
478 581 4.778904 CAGCCAATGAAAAAGCAAACATG 58.221 39.130 0.00 0.00 0.00 3.21
479 582 3.251487 GCAGCCAATGAAAAAGCAAACAT 59.749 39.130 0.00 0.00 0.00 2.71
480 583 2.613133 GCAGCCAATGAAAAAGCAAACA 59.387 40.909 0.00 0.00 0.00 2.83
481 584 2.613133 TGCAGCCAATGAAAAAGCAAAC 59.387 40.909 0.00 0.00 0.00 2.93
482 585 2.915349 TGCAGCCAATGAAAAAGCAAA 58.085 38.095 0.00 0.00 0.00 3.68
483 586 2.616634 TGCAGCCAATGAAAAAGCAA 57.383 40.000 0.00 0.00 0.00 3.91
485 588 1.129811 GCATGCAGCCAATGAAAAAGC 59.870 47.619 14.21 0.00 37.23 3.51
486 589 2.418692 TGCATGCAGCCAATGAAAAAG 58.581 42.857 18.46 0.00 44.83 2.27
487 590 2.545537 TGCATGCAGCCAATGAAAAA 57.454 40.000 18.46 0.00 44.83 1.94
488 591 2.289756 ACATGCATGCAGCCAATGAAAA 60.290 40.909 26.69 0.00 44.83 2.29
489 592 1.276705 ACATGCATGCAGCCAATGAAA 59.723 42.857 26.69 0.00 44.83 2.69
490 593 0.899019 ACATGCATGCAGCCAATGAA 59.101 45.000 26.69 0.00 44.83 2.57
491 594 0.174617 CACATGCATGCAGCCAATGA 59.825 50.000 26.69 0.00 44.83 2.57
492 595 0.174617 TCACATGCATGCAGCCAATG 59.825 50.000 26.69 20.32 44.83 2.82
493 596 0.459899 CTCACATGCATGCAGCCAAT 59.540 50.000 26.69 5.62 44.83 3.16
494 597 0.609681 TCTCACATGCATGCAGCCAA 60.610 50.000 26.69 10.65 44.83 4.52
495 598 1.001887 TCTCACATGCATGCAGCCA 60.002 52.632 26.69 8.75 44.83 4.75
496 599 0.746923 TCTCTCACATGCATGCAGCC 60.747 55.000 26.69 0.00 44.83 4.85
497 600 0.658368 CTCTCTCACATGCATGCAGC 59.342 55.000 26.69 0.00 45.96 5.25
498 601 1.666189 CACTCTCTCACATGCATGCAG 59.334 52.381 26.69 21.02 0.00 4.41
499 602 1.734163 CACTCTCTCACATGCATGCA 58.266 50.000 26.53 25.04 0.00 3.96
500 603 0.377554 GCACTCTCTCACATGCATGC 59.622 55.000 26.53 11.82 38.00 4.06
501 604 1.734163 TGCACTCTCTCACATGCATG 58.266 50.000 25.09 25.09 42.92 4.06
504 607 1.400846 CCAATGCACTCTCTCACATGC 59.599 52.381 0.00 0.00 38.59 4.06
505 608 2.014857 CCCAATGCACTCTCTCACATG 58.985 52.381 0.00 0.00 0.00 3.21
506 609 1.911357 TCCCAATGCACTCTCTCACAT 59.089 47.619 0.00 0.00 0.00 3.21
507 610 1.277273 CTCCCAATGCACTCTCTCACA 59.723 52.381 0.00 0.00 0.00 3.58
508 611 1.277557 ACTCCCAATGCACTCTCTCAC 59.722 52.381 0.00 0.00 0.00 3.51
509 612 1.277273 CACTCCCAATGCACTCTCTCA 59.723 52.381 0.00 0.00 0.00 3.27
510 613 1.552337 TCACTCCCAATGCACTCTCTC 59.448 52.381 0.00 0.00 0.00 3.20
511 614 1.649321 TCACTCCCAATGCACTCTCT 58.351 50.000 0.00 0.00 0.00 3.10
512 615 2.479566 TTCACTCCCAATGCACTCTC 57.520 50.000 0.00 0.00 0.00 3.20
513 616 2.957402 TTTCACTCCCAATGCACTCT 57.043 45.000 0.00 0.00 0.00 3.24
514 617 5.643379 TTTATTTCACTCCCAATGCACTC 57.357 39.130 0.00 0.00 0.00 3.51
515 618 5.774690 TCTTTTATTTCACTCCCAATGCACT 59.225 36.000 0.00 0.00 0.00 4.40
516 619 6.024552 TCTTTTATTTCACTCCCAATGCAC 57.975 37.500 0.00 0.00 0.00 4.57
517 620 6.662865 TTCTTTTATTTCACTCCCAATGCA 57.337 33.333 0.00 0.00 0.00 3.96
518 621 9.651913 TTAATTCTTTTATTTCACTCCCAATGC 57.348 29.630 0.00 0.00 0.00 3.56
541 644 9.448438 AGACACATAGTAATTTGCTCACATTAA 57.552 29.630 0.00 0.00 0.00 1.40
542 645 9.448438 AAGACACATAGTAATTTGCTCACATTA 57.552 29.630 0.00 0.00 0.00 1.90
543 646 7.928307 AGACACATAGTAATTTGCTCACATT 57.072 32.000 0.00 0.00 0.00 2.71
544 647 7.148188 CCAAGACACATAGTAATTTGCTCACAT 60.148 37.037 0.00 0.00 0.00 3.21
545 648 6.149308 CCAAGACACATAGTAATTTGCTCACA 59.851 38.462 0.00 0.00 0.00 3.58
546 649 6.149474 ACCAAGACACATAGTAATTTGCTCAC 59.851 38.462 0.00 0.00 0.00 3.51
547 650 6.237901 ACCAAGACACATAGTAATTTGCTCA 58.762 36.000 0.00 0.00 0.00 4.26
548 651 6.595716 AGACCAAGACACATAGTAATTTGCTC 59.404 38.462 0.00 0.00 0.00 4.26
549 652 6.476378 AGACCAAGACACATAGTAATTTGCT 58.524 36.000 0.00 0.00 0.00 3.91
550 653 6.743575 AGACCAAGACACATAGTAATTTGC 57.256 37.500 0.00 0.00 0.00 3.68
555 658 9.706691 CTTCTTTTAGACCAAGACACATAGTAA 57.293 33.333 0.00 0.00 29.70 2.24
556 659 8.867097 ACTTCTTTTAGACCAAGACACATAGTA 58.133 33.333 0.00 0.00 29.70 1.82
557 660 7.736893 ACTTCTTTTAGACCAAGACACATAGT 58.263 34.615 0.00 0.00 29.70 2.12
558 661 8.499162 CAACTTCTTTTAGACCAAGACACATAG 58.501 37.037 0.00 0.00 29.70 2.23
559 662 7.990886 ACAACTTCTTTTAGACCAAGACACATA 59.009 33.333 0.00 0.00 29.70 2.29
560 663 6.828785 ACAACTTCTTTTAGACCAAGACACAT 59.171 34.615 0.00 0.00 29.70 3.21
561 664 6.177610 ACAACTTCTTTTAGACCAAGACACA 58.822 36.000 0.00 0.00 29.70 3.72
562 665 6.539103 AGACAACTTCTTTTAGACCAAGACAC 59.461 38.462 0.00 0.00 29.70 3.67
563 666 6.650120 AGACAACTTCTTTTAGACCAAGACA 58.350 36.000 0.00 0.00 29.70 3.41
564 667 7.555306 AAGACAACTTCTTTTAGACCAAGAC 57.445 36.000 0.00 0.00 42.37 3.01
577 680 6.374417 TCATTAGGCCTAAAGACAACTTCT 57.626 37.500 28.50 5.71 35.05 2.85
578 681 6.127980 GGTTCATTAGGCCTAAAGACAACTTC 60.128 42.308 28.50 13.83 35.05 3.01
579 682 5.710567 GGTTCATTAGGCCTAAAGACAACTT 59.289 40.000 28.50 7.24 38.05 2.66
580 683 5.254115 GGTTCATTAGGCCTAAAGACAACT 58.746 41.667 28.50 8.01 0.00 3.16
581 684 4.398358 GGGTTCATTAGGCCTAAAGACAAC 59.602 45.833 28.50 22.44 0.00 3.32
582 685 4.595986 GGGTTCATTAGGCCTAAAGACAA 58.404 43.478 28.50 13.06 0.00 3.18
583 686 3.370103 CGGGTTCATTAGGCCTAAAGACA 60.370 47.826 28.50 16.36 0.00 3.41
584 687 3.203716 CGGGTTCATTAGGCCTAAAGAC 58.796 50.000 28.50 23.35 0.00 3.01
585 688 2.171870 CCGGGTTCATTAGGCCTAAAGA 59.828 50.000 28.50 25.72 0.00 2.52
586 689 2.171870 TCCGGGTTCATTAGGCCTAAAG 59.828 50.000 28.50 23.83 0.00 1.85
587 690 2.092807 GTCCGGGTTCATTAGGCCTAAA 60.093 50.000 28.50 11.13 0.00 1.85
588 691 1.487558 GTCCGGGTTCATTAGGCCTAA 59.512 52.381 27.11 27.11 0.00 2.69
589 692 1.125633 GTCCGGGTTCATTAGGCCTA 58.874 55.000 8.91 8.91 0.00 3.93
599 702 2.843912 TACTCCCTCCGTCCGGGTTC 62.844 65.000 0.00 0.00 42.56 3.62
623 726 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
690 793 7.450634 GGGTAGGAACATCTATGTAGTGTCATA 59.549 40.741 0.00 0.00 40.80 2.15
752 862 8.289618 GTCACAATGAGCAAGAACATAAGTTAA 58.710 33.333 0.00 0.00 38.30 2.01
755 865 5.182001 GGTCACAATGAGCAAGAACATAAGT 59.818 40.000 3.22 0.00 43.79 2.24
769 879 1.281867 CCCTAAGGCTGGTCACAATGA 59.718 52.381 0.00 0.00 0.00 2.57
795 905 8.189460 GCGGACTTTTTAGTCTAGAGATTAGAA 58.811 37.037 0.00 0.00 38.74 2.10
796 906 7.338703 TGCGGACTTTTTAGTCTAGAGATTAGA 59.661 37.037 0.00 0.00 38.74 2.10
797 907 7.432838 GTGCGGACTTTTTAGTCTAGAGATTAG 59.567 40.741 0.00 0.00 38.74 1.73
798 908 7.256286 GTGCGGACTTTTTAGTCTAGAGATTA 58.744 38.462 0.00 0.00 38.74 1.75
799 909 6.100668 GTGCGGACTTTTTAGTCTAGAGATT 58.899 40.000 0.00 0.00 38.74 2.40
800 910 5.394333 GGTGCGGACTTTTTAGTCTAGAGAT 60.394 44.000 7.11 0.00 38.74 2.75
801 911 4.082354 GGTGCGGACTTTTTAGTCTAGAGA 60.082 45.833 7.11 0.00 38.74 3.10
802 912 4.174762 GGTGCGGACTTTTTAGTCTAGAG 58.825 47.826 7.11 0.00 38.74 2.43
803 913 3.056322 GGGTGCGGACTTTTTAGTCTAGA 60.056 47.826 7.11 0.00 38.74 2.43
804 914 3.259902 GGGTGCGGACTTTTTAGTCTAG 58.740 50.000 7.11 2.24 38.74 2.43
805 915 2.027837 GGGGTGCGGACTTTTTAGTCTA 60.028 50.000 7.11 0.00 38.74 2.59
806 916 1.271217 GGGGTGCGGACTTTTTAGTCT 60.271 52.381 7.11 0.00 38.74 3.24
807 917 1.162698 GGGGTGCGGACTTTTTAGTC 58.837 55.000 7.11 0.00 38.04 2.59
808 918 0.251033 GGGGGTGCGGACTTTTTAGT 60.251 55.000 7.11 0.00 0.00 2.24
809 919 2.563297 GGGGGTGCGGACTTTTTAG 58.437 57.895 7.11 0.00 0.00 1.85
810 920 4.826248 GGGGGTGCGGACTTTTTA 57.174 55.556 7.11 0.00 0.00 1.52
863 973 1.603236 TTAAATGCTGCCGCTTGGGG 61.603 55.000 0.70 0.00 36.97 4.96
999 1124 1.206523 GTGGTTCGCGGAGTTATAGC 58.793 55.000 6.13 0.00 0.00 2.97
1478 1612 2.994995 AGCACCCCGACGATGACA 60.995 61.111 0.00 0.00 0.00 3.58
1526 1660 1.962100 GGTAGGTTCCTATCCGACAGG 59.038 57.143 1.73 0.00 33.37 4.00
1835 1969 2.663520 CACACCTTGTACGCGGCA 60.664 61.111 12.47 6.26 0.00 5.69
1925 2059 1.537638 CCTATGGAGACGGAGATGACG 59.462 57.143 0.00 0.00 37.36 4.35
2021 2155 2.140792 AGAGGTGGCCACGAACACT 61.141 57.895 29.08 19.78 37.72 3.55
2168 2302 0.256464 CGGAGTAGAGAGACACCCCT 59.744 60.000 0.00 0.00 0.00 4.79
2171 2305 0.680280 TGCCGGAGTAGAGAGACACC 60.680 60.000 5.05 0.00 0.00 4.16
2483 2617 1.674322 GGTGGTGTTGGCAGCGTAT 60.674 57.895 0.00 0.00 45.36 3.06
2630 2764 4.096003 AGGATGTTGACGCCGGGG 62.096 66.667 18.33 18.33 0.00 5.73
2697 2831 1.827399 ATGTTGAACTCCGTCCGCCT 61.827 55.000 0.00 0.00 0.00 5.52
3083 3217 0.901580 TGGACGGGTAGTTCAGGTCC 60.902 60.000 1.68 1.68 45.75 4.46
3409 3543 1.178534 CGTGCCCCCACTTGTCAATT 61.179 55.000 0.00 0.00 39.86 2.32
3448 3603 1.883084 GACGCCCACTGCCTTATCG 60.883 63.158 0.00 0.00 36.24 2.92
3449 3604 1.883084 CGACGCCCACTGCCTTATC 60.883 63.158 0.00 0.00 36.24 1.75
3450 3605 2.186903 CGACGCCCACTGCCTTAT 59.813 61.111 0.00 0.00 36.24 1.73
3451 3606 4.077184 CCGACGCCCACTGCCTTA 62.077 66.667 0.00 0.00 36.24 2.69
3464 3619 3.282745 TTCTGCTCACTCGCCCGAC 62.283 63.158 0.00 0.00 0.00 4.79
3465 3620 2.989253 TTCTGCTCACTCGCCCGA 60.989 61.111 0.00 0.00 0.00 5.14
3466 3621 2.507992 CTTCTGCTCACTCGCCCG 60.508 66.667 0.00 0.00 0.00 6.13
3467 3622 1.446966 GACTTCTGCTCACTCGCCC 60.447 63.158 0.00 0.00 0.00 6.13
3468 3623 0.735632 CTGACTTCTGCTCACTCGCC 60.736 60.000 0.00 0.00 0.00 5.54
3582 3737 5.558844 CGCTTTAATAATCAATCGCAGCAGA 60.559 40.000 0.00 0.00 0.00 4.26
3589 3744 3.479006 CCCGCGCTTTAATAATCAATCG 58.521 45.455 5.56 0.00 0.00 3.34
3599 3754 2.031314 TCACTGCCCGCGCTTTAA 59.969 55.556 5.56 0.00 35.36 1.52
3600 3755 2.238847 ATCTCACTGCCCGCGCTTTA 62.239 55.000 5.56 0.00 35.36 1.85
3602 3757 2.721167 TATCTCACTGCCCGCGCTT 61.721 57.895 5.56 0.00 35.36 4.68
3608 3764 2.550606 CTCTACGAGTATCTCACTGCCC 59.449 54.545 0.00 0.00 37.72 5.36
3621 3777 2.742589 TGCTGTCACTGTACTCTACGAG 59.257 50.000 0.00 0.00 35.52 4.18
3623 3779 2.484651 ACTGCTGTCACTGTACTCTACG 59.515 50.000 0.00 0.00 0.00 3.51
3728 3891 8.794553 ACAGTAACAATACTAGAATATCTCCGG 58.205 37.037 0.00 0.00 40.44 5.14
3745 3908 5.240183 AGTTACACTCGAGCTACAGTAACAA 59.760 40.000 27.66 8.80 42.07 2.83
3747 3910 5.294050 AGTTACACTCGAGCTACAGTAAC 57.706 43.478 23.34 23.34 40.73 2.50
3780 3958 0.815734 GATCACAATTGGCAGCAGCT 59.184 50.000 10.83 0.00 41.70 4.24
3828 4006 4.401202 TGACCAGCGAGTCATTAGTCAATA 59.599 41.667 7.66 0.00 41.78 1.90
3830 4008 2.560981 TGACCAGCGAGTCATTAGTCAA 59.439 45.455 7.66 0.00 41.78 3.18
3831 4009 2.167662 TGACCAGCGAGTCATTAGTCA 58.832 47.619 7.66 0.00 41.78 3.41
3832 4010 2.941453 TGACCAGCGAGTCATTAGTC 57.059 50.000 7.66 0.00 41.78 2.59
3838 4016 0.315251 CAGAAGTGACCAGCGAGTCA 59.685 55.000 7.66 7.66 44.38 3.41
3839 4017 1.011451 GCAGAAGTGACCAGCGAGTC 61.011 60.000 2.53 2.53 37.28 3.36
3840 4018 1.005630 GCAGAAGTGACCAGCGAGT 60.006 57.895 0.00 0.00 0.00 4.18
3841 4019 0.390866 ATGCAGAAGTGACCAGCGAG 60.391 55.000 0.00 0.00 0.00 5.03
3842 4020 0.894835 TATGCAGAAGTGACCAGCGA 59.105 50.000 0.00 0.00 0.00 4.93
3843 4021 1.002366 GTATGCAGAAGTGACCAGCG 58.998 55.000 0.00 0.00 0.00 5.18
3844 4022 2.393271 AGTATGCAGAAGTGACCAGC 57.607 50.000 0.00 0.00 0.00 4.85
3845 4023 3.668447 ACAAGTATGCAGAAGTGACCAG 58.332 45.455 0.00 0.00 0.00 4.00
3846 4024 3.769739 ACAAGTATGCAGAAGTGACCA 57.230 42.857 0.00 0.00 0.00 4.02
3847 4025 5.120830 CAGTAACAAGTATGCAGAAGTGACC 59.879 44.000 0.00 0.00 0.00 4.02
3848 4026 5.696724 ACAGTAACAAGTATGCAGAAGTGAC 59.303 40.000 0.00 0.00 0.00 3.67
3849 4027 5.853936 ACAGTAACAAGTATGCAGAAGTGA 58.146 37.500 0.00 0.00 0.00 3.41
3850 4028 7.834068 ATACAGTAACAAGTATGCAGAAGTG 57.166 36.000 0.00 0.00 30.20 3.16
3851 4029 8.094548 TCAATACAGTAACAAGTATGCAGAAGT 58.905 33.333 0.00 0.00 31.68 3.01
3852 4030 8.383619 GTCAATACAGTAACAAGTATGCAGAAG 58.616 37.037 0.00 0.00 31.68 2.85
3853 4031 8.094548 AGTCAATACAGTAACAAGTATGCAGAA 58.905 33.333 0.00 0.00 31.68 3.02
3854 4032 7.611770 AGTCAATACAGTAACAAGTATGCAGA 58.388 34.615 0.00 0.00 31.68 4.26
3855 4033 7.834068 AGTCAATACAGTAACAAGTATGCAG 57.166 36.000 0.00 0.00 31.68 4.41
3856 4034 9.884636 ATTAGTCAATACAGTAACAAGTATGCA 57.115 29.630 0.00 0.00 31.68 3.96
3861 4039 9.640963 GAGTCATTAGTCAATACAGTAACAAGT 57.359 33.333 0.00 0.00 0.00 3.16
3862 4040 8.799091 CGAGTCATTAGTCAATACAGTAACAAG 58.201 37.037 0.00 0.00 0.00 3.16
3863 4041 7.274904 GCGAGTCATTAGTCAATACAGTAACAA 59.725 37.037 0.00 0.00 0.00 2.83
3864 4042 6.750501 GCGAGTCATTAGTCAATACAGTAACA 59.249 38.462 0.00 0.00 0.00 2.41
3865 4043 6.973474 AGCGAGTCATTAGTCAATACAGTAAC 59.027 38.462 0.00 0.00 0.00 2.50
3866 4044 6.972901 CAGCGAGTCATTAGTCAATACAGTAA 59.027 38.462 0.00 0.00 0.00 2.24
3867 4045 6.459710 CCAGCGAGTCATTAGTCAATACAGTA 60.460 42.308 0.00 0.00 0.00 2.74
3868 4046 5.344066 CAGCGAGTCATTAGTCAATACAGT 58.656 41.667 0.00 0.00 0.00 3.55
3869 4047 4.742167 CCAGCGAGTCATTAGTCAATACAG 59.258 45.833 0.00 0.00 0.00 2.74
3870 4048 4.682787 CCAGCGAGTCATTAGTCAATACA 58.317 43.478 0.00 0.00 0.00 2.29
3871 4049 3.491267 GCCAGCGAGTCATTAGTCAATAC 59.509 47.826 0.00 0.00 0.00 1.89
3872 4050 3.492656 GGCCAGCGAGTCATTAGTCAATA 60.493 47.826 0.00 0.00 0.00 1.90
3873 4051 2.555199 GCCAGCGAGTCATTAGTCAAT 58.445 47.619 0.00 0.00 0.00 2.57
3874 4052 1.405526 GGCCAGCGAGTCATTAGTCAA 60.406 52.381 0.00 0.00 0.00 3.18
3880 4058 0.674895 GAACTGGCCAGCGAGTCATT 60.675 55.000 33.06 17.33 33.95 2.57
3884 4062 2.345244 CAGAACTGGCCAGCGAGT 59.655 61.111 33.06 15.53 36.57 4.18
3887 4065 1.450134 TATGCAGAACTGGCCAGCG 60.450 57.895 33.06 18.99 0.00 5.18
3889 4067 1.091771 CCGTATGCAGAACTGGCCAG 61.092 60.000 31.60 31.60 0.00 4.85
3893 4071 0.464373 ATGGCCGTATGCAGAACTGG 60.464 55.000 0.00 0.86 43.89 4.00
3895 4073 0.833287 AGATGGCCGTATGCAGAACT 59.167 50.000 0.00 0.00 43.89 3.01
3915 4093 5.123502 CCAGAGTTTCTTGATCTCCAACATG 59.876 44.000 0.00 0.00 0.00 3.21
3918 4096 4.693095 GTCCAGAGTTTCTTGATCTCCAAC 59.307 45.833 0.00 0.00 0.00 3.77
3944 4122 4.332428 ACACCTCTAAATATACCCACGC 57.668 45.455 0.00 0.00 0.00 5.34
4001 4205 2.185867 ACACGACGCAACCAGTGT 59.814 55.556 0.00 0.00 45.36 3.55
4013 4224 2.139917 GTAACATTGTCTGGCACACGA 58.860 47.619 0.00 0.00 33.41 4.35
4049 4260 8.689061 ACGTGGGTTTTAAGAGAAGTTTAATTT 58.311 29.630 0.00 0.00 0.00 1.82
4050 4261 8.229253 ACGTGGGTTTTAAGAGAAGTTTAATT 57.771 30.769 0.00 0.00 0.00 1.40
4051 4262 7.812690 ACGTGGGTTTTAAGAGAAGTTTAAT 57.187 32.000 0.00 0.00 0.00 1.40
4052 4263 7.628769 AACGTGGGTTTTAAGAGAAGTTTAA 57.371 32.000 0.00 0.00 30.42 1.52
4053 4264 8.203485 TCTAACGTGGGTTTTAAGAGAAGTTTA 58.797 33.333 0.00 0.00 37.58 2.01
4054 4265 7.049754 TCTAACGTGGGTTTTAAGAGAAGTTT 58.950 34.615 0.00 0.00 37.58 2.66
4055 4266 6.585416 TCTAACGTGGGTTTTAAGAGAAGTT 58.415 36.000 0.00 0.00 37.58 2.66
4056 4267 6.165700 TCTAACGTGGGTTTTAAGAGAAGT 57.834 37.500 0.00 0.00 37.58 3.01
4057 4268 5.120363 GCTCTAACGTGGGTTTTAAGAGAAG 59.880 44.000 8.62 0.00 38.08 2.85
4058 4269 4.992951 GCTCTAACGTGGGTTTTAAGAGAA 59.007 41.667 8.62 0.00 38.08 2.87
4059 4270 4.039488 TGCTCTAACGTGGGTTTTAAGAGA 59.961 41.667 8.62 0.00 38.08 3.10
4060 4271 4.312443 TGCTCTAACGTGGGTTTTAAGAG 58.688 43.478 0.00 0.00 38.52 2.85
4061 4272 4.339872 TGCTCTAACGTGGGTTTTAAGA 57.660 40.909 0.00 0.00 37.58 2.10
4062 4273 4.514066 AGTTGCTCTAACGTGGGTTTTAAG 59.486 41.667 0.00 0.00 44.15 1.85
4063 4274 4.453751 AGTTGCTCTAACGTGGGTTTTAA 58.546 39.130 0.00 0.00 44.15 1.52
4064 4275 4.075963 AGTTGCTCTAACGTGGGTTTTA 57.924 40.909 0.00 0.00 44.15 1.52
4065 4276 2.927028 AGTTGCTCTAACGTGGGTTTT 58.073 42.857 0.00 0.00 44.15 2.43
4066 4277 2.632987 AGTTGCTCTAACGTGGGTTT 57.367 45.000 0.00 0.00 44.15 3.27
4067 4278 2.158871 TGAAGTTGCTCTAACGTGGGTT 60.159 45.455 0.00 0.00 44.15 4.11
4068 4279 1.414919 TGAAGTTGCTCTAACGTGGGT 59.585 47.619 0.00 0.00 44.15 4.51
4069 4280 2.163818 TGAAGTTGCTCTAACGTGGG 57.836 50.000 0.00 0.00 44.15 4.61
4070 4281 3.120199 CCATTGAAGTTGCTCTAACGTGG 60.120 47.826 0.00 0.00 44.15 4.94
4071 4282 3.745975 TCCATTGAAGTTGCTCTAACGTG 59.254 43.478 0.00 0.00 44.15 4.49
4072 4283 3.997021 CTCCATTGAAGTTGCTCTAACGT 59.003 43.478 0.00 0.00 44.15 3.99
4073 4284 3.181516 GCTCCATTGAAGTTGCTCTAACG 60.182 47.826 0.00 0.00 44.15 3.18
4086 4297 2.167693 ACGAAATAGGTCGCTCCATTGA 59.832 45.455 0.00 0.00 45.00 2.57
4093 4304 0.179145 CGTGGACGAAATAGGTCGCT 60.179 55.000 0.00 0.00 45.00 4.93
4146 4357 2.126228 GATCGACGCGTTGGGACA 60.126 61.111 25.66 7.37 0.00 4.02
4148 4359 2.437518 TTTGGATCGACGCGTTGGGA 62.438 55.000 25.66 17.49 0.00 4.37
4191 4402 3.782443 GGGAATGGGTCGTCGGCT 61.782 66.667 0.00 0.00 0.00 5.52
4194 4405 4.524318 CCCGGGAATGGGTCGTCG 62.524 72.222 18.48 0.00 44.76 5.12
4209 4420 3.912496 AATTAGGCTCAAAAATGGCCC 57.088 42.857 0.00 0.00 46.31 5.80
4388 4606 2.359230 GCGGCAGCTGGAAGAGTT 60.359 61.111 17.12 0.00 41.01 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.