Multiple sequence alignment - TraesCS4A01G071100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G071100 chr4A 100.000 4719 0 0 1 4719 68471195 68466477 0.000000e+00 8715.0
1 TraesCS4A01G071100 chr4A 75.701 321 60 13 3249 3564 37318250 37318557 1.370000e-30 145.0
2 TraesCS4A01G071100 chr4D 93.335 3931 139 49 1 3840 386998496 386994598 0.000000e+00 5694.0
3 TraesCS4A01G071100 chr4D 85.959 292 40 1 4428 4719 386994464 386994174 1.280000e-80 311.0
4 TraesCS4A01G071100 chr4D 75.389 321 61 13 3249 3564 428941065 428940758 6.370000e-29 139.0
5 TraesCS4A01G071100 chr4D 90.476 63 4 2 3391 3452 8258887 8258948 1.090000e-11 82.4
6 TraesCS4A01G071100 chr4B 91.034 3926 202 72 1 3845 475196620 475192764 0.000000e+00 5162.0
7 TraesCS4A01G071100 chr4B 89.978 449 43 2 3924 4371 650680284 650680731 3.170000e-161 579.0
8 TraesCS4A01G071100 chr4B 86.942 291 38 0 4428 4718 475192153 475191863 1.270000e-85 327.0
9 TraesCS4A01G071100 chr4B 75.701 321 60 13 3249 3564 526275567 526275874 1.370000e-30 145.0
10 TraesCS4A01G071100 chr4B 92.063 63 3 2 3391 3452 15753796 15753857 2.340000e-13 87.9
11 TraesCS4A01G071100 chr2A 89.310 449 46 2 3924 4371 649506733 649507180 3.190000e-156 562.0
12 TraesCS4A01G071100 chr2A 89.631 434 44 1 3939 4371 760300593 760300160 6.900000e-153 551.0
13 TraesCS4A01G071100 chr7D 89.262 447 47 1 3924 4370 40715566 40716011 4.120000e-155 558.0
14 TraesCS4A01G071100 chr2B 90.046 432 42 1 3940 4371 52417660 52417230 4.120000e-155 558.0
15 TraesCS4A01G071100 chr2B 89.062 448 49 0 3924 4371 143188501 143188948 1.480000e-154 556.0
16 TraesCS4A01G071100 chr3D 88.839 448 50 0 3924 4371 93487829 93488276 6.900000e-153 551.0
17 TraesCS4A01G071100 chr3D 88.641 449 49 2 3924 4371 548508653 548509100 3.210000e-151 545.0
18 TraesCS4A01G071100 chr6B 88.470 451 48 4 3924 4371 559331871 559332320 4.150000e-150 542.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G071100 chr4A 68466477 68471195 4718 True 8715.0 8715 100.000 1 4719 1 chr4A.!!$R1 4718
1 TraesCS4A01G071100 chr4D 386994174 386998496 4322 True 3002.5 5694 89.647 1 4719 2 chr4D.!!$R2 4718
2 TraesCS4A01G071100 chr4B 475191863 475196620 4757 True 2744.5 5162 88.988 1 4718 2 chr4B.!!$R1 4717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 228 0.032952 TGGACGACTACAGTGCAACC 59.967 55.0 0.00 0.0 37.01 3.77 F
399 419 0.254178 CCAGGCCAGCACTGTCTTAT 59.746 55.0 5.01 0.0 34.16 1.73 F
857 903 0.254178 GCTCTCCTTGCCCTGAATGA 59.746 55.0 0.00 0.0 0.00 2.57 F
2402 2512 0.307760 GAAGCGTGTCACCTTGTTGG 59.692 55.0 10.35 0.0 42.93 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1859 1969 0.324614 TCCGTCAGTCCATTGTGCAT 59.675 50.0 0.00 0.0 0.0 3.96 R
1861 1971 0.798776 CTTCCGTCAGTCCATTGTGC 59.201 55.0 0.00 0.0 0.0 4.57 R
2672 2809 0.318762 AAGTCCTTGGACGTCTGCTC 59.681 55.0 16.46 0.0 0.0 4.26 R
4257 4400 0.035152 ACATGAGCCGCTTGATTCCA 60.035 50.0 0.00 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.697751 CCAACTGGCTGCTATCTAGAGT 59.302 50.000 0.00 0.00 0.00 3.24
59 62 8.531622 TGCTATCTAGAGTACGTACTAATGAC 57.468 38.462 27.44 14.85 36.50 3.06
97 100 2.255252 GGCGTGTCACATGTTGCC 59.745 61.111 0.00 3.45 35.04 4.52
225 228 0.032952 TGGACGACTACAGTGCAACC 59.967 55.000 0.00 0.00 37.01 3.77
226 229 0.669625 GGACGACTACAGTGCAACCC 60.670 60.000 0.00 0.00 37.80 4.11
227 230 0.032952 GACGACTACAGTGCAACCCA 59.967 55.000 0.00 0.00 37.80 4.51
228 231 0.685097 ACGACTACAGTGCAACCCAT 59.315 50.000 0.00 0.00 37.80 4.00
230 233 1.739067 GACTACAGTGCAACCCATCC 58.261 55.000 0.00 0.00 37.80 3.51
231 234 1.279271 GACTACAGTGCAACCCATCCT 59.721 52.381 0.00 0.00 37.80 3.24
242 249 4.141482 TGCAACCCATCCTCTATTAACTCC 60.141 45.833 0.00 0.00 0.00 3.85
243 250 4.141482 GCAACCCATCCTCTATTAACTCCA 60.141 45.833 0.00 0.00 0.00 3.86
306 316 3.678717 ATCCGCGACCGTGAACTCG 62.679 63.158 8.23 0.00 0.00 4.18
396 416 2.149383 TTCCAGGCCAGCACTGTCT 61.149 57.895 5.01 0.00 34.16 3.41
397 417 1.708993 TTCCAGGCCAGCACTGTCTT 61.709 55.000 5.01 0.00 34.16 3.01
398 418 0.835971 TCCAGGCCAGCACTGTCTTA 60.836 55.000 5.01 0.00 34.16 2.10
399 419 0.254178 CCAGGCCAGCACTGTCTTAT 59.746 55.000 5.01 0.00 34.16 1.73
400 420 1.340405 CCAGGCCAGCACTGTCTTATT 60.340 52.381 5.01 0.00 34.16 1.40
401 421 2.440409 CAGGCCAGCACTGTCTTATTT 58.560 47.619 5.01 0.00 0.00 1.40
402 422 2.821969 CAGGCCAGCACTGTCTTATTTT 59.178 45.455 5.01 0.00 0.00 1.82
403 423 3.256631 CAGGCCAGCACTGTCTTATTTTT 59.743 43.478 5.01 0.00 0.00 1.94
404 424 3.507622 AGGCCAGCACTGTCTTATTTTTC 59.492 43.478 5.01 0.00 0.00 2.29
405 425 3.507622 GGCCAGCACTGTCTTATTTTTCT 59.492 43.478 0.00 0.00 0.00 2.52
406 426 4.021981 GGCCAGCACTGTCTTATTTTTCTT 60.022 41.667 0.00 0.00 0.00 2.52
409 429 6.623767 GCCAGCACTGTCTTATTTTTCTTAGG 60.624 42.308 0.00 0.00 0.00 2.69
415 435 7.064253 CACTGTCTTATTTTTCTTAGGGGTACG 59.936 40.741 0.00 0.00 0.00 3.67
416 436 7.008021 TGTCTTATTTTTCTTAGGGGTACGT 57.992 36.000 0.00 0.00 0.00 3.57
418 438 7.603784 TGTCTTATTTTTCTTAGGGGTACGTTC 59.396 37.037 0.00 0.00 0.00 3.95
621 654 2.035626 CTGCACCAAACCCGGGAT 59.964 61.111 32.02 14.52 0.00 3.85
805 848 2.783288 CCTCGGCCGTCTTCTACCC 61.783 68.421 27.15 0.00 0.00 3.69
811 854 2.783288 CCGTCTTCTACCCGGGAGC 61.783 68.421 32.02 9.25 38.09 4.70
812 855 2.783288 CGTCTTCTACCCGGGAGCC 61.783 68.421 32.02 1.80 0.00 4.70
854 900 0.905357 GTAGCTCTCCTTGCCCTGAA 59.095 55.000 0.00 0.00 0.00 3.02
855 901 1.488393 GTAGCTCTCCTTGCCCTGAAT 59.512 52.381 0.00 0.00 0.00 2.57
856 902 0.255318 AGCTCTCCTTGCCCTGAATG 59.745 55.000 0.00 0.00 0.00 2.67
857 903 0.254178 GCTCTCCTTGCCCTGAATGA 59.746 55.000 0.00 0.00 0.00 2.57
858 904 1.133853 GCTCTCCTTGCCCTGAATGAT 60.134 52.381 0.00 0.00 0.00 2.45
860 906 2.172082 CTCTCCTTGCCCTGAATGATCA 59.828 50.000 0.00 0.00 0.00 2.92
861 907 2.781757 TCTCCTTGCCCTGAATGATCAT 59.218 45.455 1.18 1.18 34.37 2.45
862 908 3.975982 TCTCCTTGCCCTGAATGATCATA 59.024 43.478 9.04 0.00 34.37 2.15
863 909 4.041321 TCTCCTTGCCCTGAATGATCATAG 59.959 45.833 9.04 3.45 34.37 2.23
864 910 2.818432 CCTTGCCCTGAATGATCATAGC 59.182 50.000 9.04 7.96 34.37 2.97
865 911 3.483421 CTTGCCCTGAATGATCATAGCA 58.517 45.455 9.04 10.37 40.01 3.49
866 912 3.136009 TGCCCTGAATGATCATAGCAG 57.864 47.619 22.43 22.43 38.09 4.24
867 913 1.811359 GCCCTGAATGATCATAGCAGC 59.189 52.381 23.35 15.23 34.97 5.25
868 914 2.812983 GCCCTGAATGATCATAGCAGCA 60.813 50.000 23.35 11.56 34.97 4.41
869 915 3.075148 CCCTGAATGATCATAGCAGCAG 58.925 50.000 23.35 17.59 34.37 4.24
870 916 2.484651 CCTGAATGATCATAGCAGCAGC 59.515 50.000 23.35 0.00 36.48 5.25
871 917 2.484651 CTGAATGATCATAGCAGCAGCC 59.515 50.000 19.52 1.02 36.76 4.85
914 960 2.662006 TCTTCTTCAGCATCCACTCG 57.338 50.000 0.00 0.00 0.00 4.18
915 961 1.005340 CTTCTTCAGCATCCACTCGC 58.995 55.000 0.00 0.00 0.00 5.03
917 963 1.474330 TCTTCAGCATCCACTCGCTA 58.526 50.000 0.00 0.00 36.50 4.26
1049 1108 2.325082 ATGCGGTGGTGTTTCTCGC 61.325 57.895 0.00 0.00 45.60 5.03
1055 1114 1.153329 TGGTGTTTCTCGCGTGGTT 60.153 52.632 5.77 0.00 0.00 3.67
1116 1175 4.276926 CCTCCTGGTCAGTTTCTTTCTTTG 59.723 45.833 0.00 0.00 0.00 2.77
1275 1345 3.131396 TCTGTTCTGCGTTCTTTTCTCC 58.869 45.455 0.00 0.00 0.00 3.71
1354 1424 2.684881 AGCTGGTCTTTGTCAACTGTTG 59.315 45.455 14.24 14.24 0.00 3.33
1373 1443 4.225984 GTTGTTGCATTGTTTATCAGCGA 58.774 39.130 0.00 0.00 0.00 4.93
1379 1449 1.737838 TTGTTTATCAGCGAGGGCAG 58.262 50.000 0.00 0.00 43.41 4.85
1387 1457 2.817396 GCGAGGGCAGTGCTCTTC 60.817 66.667 20.89 10.70 40.72 2.87
1388 1458 2.125350 CGAGGGCAGTGCTCTTCC 60.125 66.667 20.89 9.66 40.72 3.46
1463 1544 3.451894 CGCCTGCCCAAATCCACC 61.452 66.667 0.00 0.00 0.00 4.61
1585 1675 2.159435 CCGCACCAACCTGCTAAAATAC 60.159 50.000 0.00 0.00 34.77 1.89
1611 1701 7.414651 CCACACACAAACAAATGACAACTAGTA 60.415 37.037 0.00 0.00 0.00 1.82
1673 1776 3.009723 ACGGTATGTTCTGAAATGGCTG 58.990 45.455 0.00 0.00 0.00 4.85
1733 1836 2.162208 TGCTCTTATTTGGAAGCAAGCG 59.838 45.455 0.00 0.00 31.89 4.68
1783 1886 1.019673 CAGGCCGACCAAATGATCTG 58.980 55.000 0.00 0.00 39.06 2.90
1793 1896 3.944015 ACCAAATGATCTGCTTACTGCTC 59.056 43.478 0.00 0.00 43.37 4.26
1806 1909 8.474831 TCTGCTTACTGCTCATTAGTTGTATAA 58.525 33.333 0.00 0.00 43.37 0.98
1833 1943 5.298347 ACGCTTAGCTGAACTTTTAGTCTT 58.702 37.500 1.76 0.00 0.00 3.01
1859 1969 3.051210 CTGTCGCTGTCCTGTCCA 58.949 61.111 0.00 0.00 0.00 4.02
1861 1971 0.738762 CTGTCGCTGTCCTGTCCATG 60.739 60.000 0.00 0.00 0.00 3.66
1862 1972 2.103042 GTCGCTGTCCTGTCCATGC 61.103 63.158 0.00 0.00 0.00 4.06
1866 1976 0.890542 GCTGTCCTGTCCATGCACAA 60.891 55.000 0.00 0.00 0.00 3.33
1892 2002 3.972107 ACGGAAGTTTGAGTGCGTA 57.028 47.368 0.00 0.00 46.40 4.42
1967 2077 1.753930 TCGCTCGTGGAATAGTGGTA 58.246 50.000 0.00 0.00 0.00 3.25
2139 2249 1.663695 ACAACCTCAACAAGTCCACG 58.336 50.000 0.00 0.00 0.00 4.94
2154 2264 1.471287 TCCACGATGTACACCTTCTCG 59.529 52.381 12.90 12.90 35.56 4.04
2190 2300 3.223589 GGCTCTCCCTCGGCTCTC 61.224 72.222 0.00 0.00 0.00 3.20
2280 2390 4.344865 TGGGCGTTCCTCAAGGGC 62.345 66.667 0.00 0.00 41.13 5.19
2338 2448 3.334583 TCTTCTTCCAGGTGCACATAC 57.665 47.619 20.43 0.61 0.00 2.39
2339 2449 2.002586 CTTCTTCCAGGTGCACATACG 58.997 52.381 20.43 5.24 0.00 3.06
2402 2512 0.307760 GAAGCGTGTCACCTTGTTGG 59.692 55.000 10.35 0.00 42.93 3.77
2698 2835 1.376037 GTCCAAGGACTTCCCGCTG 60.376 63.158 11.94 0.00 41.57 5.18
2758 2895 3.217242 CCAGAAGTGGTTCGTGGAG 57.783 57.895 0.00 0.00 39.30 3.86
2923 3060 2.047179 GAGAACCAGGACGCCACC 60.047 66.667 0.00 0.00 0.00 4.61
2947 3084 2.449518 TGGGTGAAGGGCCTGTCA 60.450 61.111 6.92 10.63 0.00 3.58
2953 3090 3.316573 GAAGGGCCTGTCACCGGAG 62.317 68.421 9.46 0.00 0.00 4.63
3223 3360 4.821589 CGGCTCAAGGACCTCCGC 62.822 72.222 6.43 4.08 42.08 5.54
3273 3410 1.954362 CTCGAGGGCCACTTCTCCAG 61.954 65.000 6.18 0.00 0.00 3.86
3517 3654 0.955919 GGAACCTCAAGAACCTGCCG 60.956 60.000 0.00 0.00 0.00 5.69
3520 3657 1.672356 CCTCAAGAACCTGCCGGTG 60.672 63.158 1.90 0.00 44.73 4.94
3682 3819 3.382832 ACCTTCTCGCTGTCCCCG 61.383 66.667 0.00 0.00 0.00 5.73
3726 3863 3.190079 CCGTTCAGATATGACACTGGTG 58.810 50.000 0.00 0.00 35.20 4.17
3769 3910 3.121030 CACGCTGTACTGCCTGCC 61.121 66.667 17.86 0.00 0.00 4.85
3773 3914 4.393155 CTGTACTGCCTGCCCGCA 62.393 66.667 0.00 0.00 37.19 5.69
3774 3915 4.697756 TGTACTGCCTGCCCGCAC 62.698 66.667 0.00 0.00 34.35 5.34
3867 4010 1.389106 GCTAGTGTAGCGGTTGTTTCG 59.611 52.381 0.00 0.00 42.62 3.46
3876 4019 2.777494 GCGGTTGTTTCGCCTAATTAC 58.223 47.619 0.00 0.00 46.55 1.89
3877 4020 2.785342 GCGGTTGTTTCGCCTAATTACG 60.785 50.000 0.00 0.00 46.55 3.18
3878 4021 2.222863 CGGTTGTTTCGCCTAATTACGG 60.223 50.000 0.00 0.00 0.00 4.02
3879 4022 2.743664 GGTTGTTTCGCCTAATTACGGT 59.256 45.455 0.00 0.00 0.00 4.83
3880 4023 3.932089 GGTTGTTTCGCCTAATTACGGTA 59.068 43.478 0.00 0.00 0.00 4.02
3881 4024 4.571984 GGTTGTTTCGCCTAATTACGGTAT 59.428 41.667 0.00 0.00 0.00 2.73
3882 4025 5.495502 GTTGTTTCGCCTAATTACGGTATG 58.504 41.667 0.00 0.00 0.00 2.39
3883 4026 4.757594 TGTTTCGCCTAATTACGGTATGT 58.242 39.130 0.00 0.00 0.00 2.29
3884 4027 4.805192 TGTTTCGCCTAATTACGGTATGTC 59.195 41.667 0.00 0.00 0.00 3.06
3885 4028 4.924305 TTCGCCTAATTACGGTATGTCT 57.076 40.909 0.00 0.00 0.00 3.41
3886 4029 6.183360 TGTTTCGCCTAATTACGGTATGTCTA 60.183 38.462 0.00 0.00 0.00 2.59
3887 4030 6.579666 TTCGCCTAATTACGGTATGTCTAT 57.420 37.500 0.00 0.00 0.00 1.98
3888 4031 6.579666 TCGCCTAATTACGGTATGTCTATT 57.420 37.500 0.00 0.00 0.00 1.73
3889 4032 6.615088 TCGCCTAATTACGGTATGTCTATTC 58.385 40.000 0.00 0.00 0.00 1.75
3900 4043 4.206609 GGTATGTCTATTCGAGCAAACGAC 59.793 45.833 0.00 0.00 41.97 4.34
3939 4082 6.801539 ACAGAACAAATGATTATGACGTGT 57.198 33.333 0.00 0.00 0.00 4.49
3940 4083 7.899178 ACAGAACAAATGATTATGACGTGTA 57.101 32.000 0.00 0.00 0.00 2.90
3942 4085 7.602644 ACAGAACAAATGATTATGACGTGTACT 59.397 33.333 0.00 0.00 0.00 2.73
3944 4087 9.084164 AGAACAAATGATTATGACGTGTACTAC 57.916 33.333 0.00 0.00 0.00 2.73
3945 4088 8.997621 AACAAATGATTATGACGTGTACTACT 57.002 30.769 0.00 0.00 0.00 2.57
3948 4091 5.413969 TGATTATGACGTGTACTACTCGG 57.586 43.478 13.62 0.00 39.16 4.63
3949 4092 5.118286 TGATTATGACGTGTACTACTCGGA 58.882 41.667 13.62 2.51 39.16 4.55
3951 4094 1.070821 TGACGTGTACTACTCGGACG 58.929 55.000 13.62 5.67 39.16 4.79
3952 4095 1.336795 TGACGTGTACTACTCGGACGA 60.337 52.381 13.62 0.00 39.16 4.20
3953 4096 1.726791 GACGTGTACTACTCGGACGAA 59.273 52.381 13.62 0.00 39.16 3.85
3955 4098 1.061711 CGTGTACTACTCGGACGAAGG 59.938 57.143 3.24 0.00 32.18 3.46
3956 4099 1.399791 GTGTACTACTCGGACGAAGGG 59.600 57.143 0.00 0.00 0.00 3.95
3957 4100 1.020437 GTACTACTCGGACGAAGGGG 58.980 60.000 0.00 0.00 0.00 4.79
3958 4101 0.620556 TACTACTCGGACGAAGGGGT 59.379 55.000 0.00 0.00 0.00 4.95
3959 4102 0.251519 ACTACTCGGACGAAGGGGTT 60.252 55.000 0.00 0.00 0.00 4.11
3960 4103 0.172803 CTACTCGGACGAAGGGGTTG 59.827 60.000 0.00 0.00 0.00 3.77
3961 4104 1.252904 TACTCGGACGAAGGGGTTGG 61.253 60.000 0.00 0.00 0.00 3.77
3962 4105 2.524887 TCGGACGAAGGGGTTGGT 60.525 61.111 0.00 0.00 0.00 3.67
3963 4106 2.358247 CGGACGAAGGGGTTGGTG 60.358 66.667 0.00 0.00 0.00 4.17
3965 4108 2.430367 GACGAAGGGGTTGGTGCT 59.570 61.111 0.00 0.00 0.00 4.40
3966 4109 1.675219 GACGAAGGGGTTGGTGCTA 59.325 57.895 0.00 0.00 0.00 3.49
3968 4111 1.740296 CGAAGGGGTTGGTGCTACG 60.740 63.158 0.00 0.00 0.00 3.51
3969 4112 1.376812 GAAGGGGTTGGTGCTACGG 60.377 63.158 0.00 0.00 0.00 4.02
3970 4113 3.562732 AAGGGGTTGGTGCTACGGC 62.563 63.158 0.00 0.00 39.26 5.68
3975 4118 3.383681 TTGGTGCTACGGCGGCTA 61.384 61.111 13.24 0.00 42.25 3.93
3977 4120 2.355956 GGTGCTACGGCGGCTATC 60.356 66.667 13.24 0.00 42.25 2.08
3978 4121 2.415843 GTGCTACGGCGGCTATCA 59.584 61.111 13.24 0.00 42.25 2.15
3980 4123 1.006220 TGCTACGGCGGCTATCATG 60.006 57.895 13.24 0.00 42.25 3.07
3982 4125 2.049526 TACGGCGGCTATCATGCG 60.050 61.111 13.24 0.00 0.00 4.73
3983 4126 2.749110 CTACGGCGGCTATCATGCGT 62.749 60.000 13.24 1.46 0.00 5.24
3984 4127 3.705638 CGGCGGCTATCATGCGTG 61.706 66.667 7.61 0.00 0.00 5.34
3985 4128 2.280119 GGCGGCTATCATGCGTGA 60.280 61.111 11.83 11.83 39.04 4.35
3986 4129 1.669115 GGCGGCTATCATGCGTGAT 60.669 57.895 24.19 24.19 46.54 3.06
3987 4130 1.494628 GCGGCTATCATGCGTGATG 59.505 57.895 28.02 18.97 44.62 3.07
3990 4133 1.869342 CGGCTATCATGCGTGATGACA 60.869 52.381 28.02 10.27 44.12 3.58
3992 4135 2.613595 GGCTATCATGCGTGATGACAAA 59.386 45.455 28.02 9.57 44.12 2.83
3993 4136 3.303593 GGCTATCATGCGTGATGACAAAG 60.304 47.826 28.02 18.59 44.12 2.77
3994 4137 3.303593 GCTATCATGCGTGATGACAAAGG 60.304 47.826 28.02 11.74 44.12 3.11
3995 4138 2.183478 TCATGCGTGATGACAAAGGT 57.817 45.000 3.97 0.00 36.06 3.50
3996 4139 3.326836 TCATGCGTGATGACAAAGGTA 57.673 42.857 3.97 0.00 36.06 3.08
3997 4140 3.669536 TCATGCGTGATGACAAAGGTAA 58.330 40.909 3.97 0.00 36.06 2.85
3998 4141 4.260985 TCATGCGTGATGACAAAGGTAAT 58.739 39.130 3.97 0.00 36.06 1.89
3999 4142 4.699735 TCATGCGTGATGACAAAGGTAATT 59.300 37.500 3.97 0.00 36.06 1.40
4002 4145 5.837437 TGCGTGATGACAAAGGTAATTTTT 58.163 33.333 0.00 0.00 0.00 1.94
4019 4162 0.686224 TTTTGGAAGCCCCATGCAAG 59.314 50.000 0.00 0.00 46.10 4.01
4022 4165 0.471591 TGGAAGCCCCATGCAAGTTT 60.472 50.000 0.00 0.00 44.83 2.66
4023 4166 1.203112 TGGAAGCCCCATGCAAGTTTA 60.203 47.619 0.00 0.00 44.83 2.01
4024 4167 2.110578 GGAAGCCCCATGCAAGTTTAT 58.889 47.619 0.00 0.00 44.83 1.40
4025 4168 3.295973 GGAAGCCCCATGCAAGTTTATA 58.704 45.455 0.00 0.00 44.83 0.98
4026 4169 3.068165 GGAAGCCCCATGCAAGTTTATAC 59.932 47.826 0.00 0.00 44.83 1.47
4027 4170 2.666317 AGCCCCATGCAAGTTTATACC 58.334 47.619 0.00 0.00 44.83 2.73
4028 4171 2.244769 AGCCCCATGCAAGTTTATACCT 59.755 45.455 0.00 0.00 44.83 3.08
4029 4172 3.461831 AGCCCCATGCAAGTTTATACCTA 59.538 43.478 0.00 0.00 44.83 3.08
4030 4173 4.106341 AGCCCCATGCAAGTTTATACCTAT 59.894 41.667 0.00 0.00 44.83 2.57
4031 4174 4.459337 GCCCCATGCAAGTTTATACCTATC 59.541 45.833 0.00 0.00 40.77 2.08
4032 4175 4.695455 CCCCATGCAAGTTTATACCTATCG 59.305 45.833 0.00 0.00 0.00 2.92
4034 4177 4.143115 CCATGCAAGTTTATACCTATCGCG 60.143 45.833 0.00 0.00 0.00 5.87
4035 4178 3.386486 TGCAAGTTTATACCTATCGCGG 58.614 45.455 6.13 0.00 0.00 6.46
4036 4179 3.181473 TGCAAGTTTATACCTATCGCGGT 60.181 43.478 6.13 0.00 41.10 5.68
4037 4180 3.183775 GCAAGTTTATACCTATCGCGGTG 59.816 47.826 6.13 0.00 37.93 4.94
4038 4181 3.655276 AGTTTATACCTATCGCGGTGG 57.345 47.619 6.13 0.00 37.93 4.61
4040 4183 3.830755 AGTTTATACCTATCGCGGTGGAT 59.169 43.478 3.47 0.00 37.93 3.41
4042 4185 0.246635 ATACCTATCGCGGTGGATGC 59.753 55.000 3.47 0.00 37.93 3.91
4043 4186 1.110518 TACCTATCGCGGTGGATGCA 61.111 55.000 3.47 0.00 37.93 3.96
4045 4188 0.603707 CCTATCGCGGTGGATGCAAT 60.604 55.000 3.47 0.00 0.00 3.56
4048 4191 0.944386 ATCGCGGTGGATGCAATAAC 59.056 50.000 6.13 0.00 0.00 1.89
4049 4192 0.391793 TCGCGGTGGATGCAATAACA 60.392 50.000 6.13 0.00 0.00 2.41
4051 4194 1.793714 CGCGGTGGATGCAATAACAAC 60.794 52.381 0.00 0.00 0.00 3.32
4052 4195 1.201181 GCGGTGGATGCAATAACAACA 59.799 47.619 0.00 0.00 0.00 3.33
4053 4196 2.731968 GCGGTGGATGCAATAACAACAG 60.732 50.000 0.00 0.00 0.00 3.16
4054 4197 2.746904 CGGTGGATGCAATAACAACAGA 59.253 45.455 0.00 0.00 0.00 3.41
4055 4198 3.190327 CGGTGGATGCAATAACAACAGAA 59.810 43.478 0.00 0.00 0.00 3.02
4057 4200 4.168760 GTGGATGCAATAACAACAGAAGC 58.831 43.478 0.00 0.00 0.00 3.86
4058 4201 3.825585 TGGATGCAATAACAACAGAAGCA 59.174 39.130 0.00 0.00 34.78 3.91
4059 4202 4.463539 TGGATGCAATAACAACAGAAGCAT 59.536 37.500 0.00 0.00 43.17 3.79
4060 4203 5.047164 TGGATGCAATAACAACAGAAGCATT 60.047 36.000 0.00 0.00 40.86 3.56
4061 4204 5.290158 GGATGCAATAACAACAGAAGCATTG 59.710 40.000 0.00 0.00 40.86 2.82
4062 4205 5.450592 TGCAATAACAACAGAAGCATTGA 57.549 34.783 0.00 0.00 0.00 2.57
4063 4206 5.221880 TGCAATAACAACAGAAGCATTGAC 58.778 37.500 0.00 0.00 0.00 3.18
4064 4207 4.622740 GCAATAACAACAGAAGCATTGACC 59.377 41.667 0.00 0.00 0.00 4.02
4065 4208 5.771469 CAATAACAACAGAAGCATTGACCA 58.229 37.500 0.00 0.00 0.00 4.02
4067 4210 3.928727 ACAACAGAAGCATTGACCATG 57.071 42.857 0.00 0.00 35.73 3.66
4075 4218 2.009108 CATTGACCATGCGAGACGG 58.991 57.895 0.00 0.00 0.00 4.79
4077 4220 3.950794 TTGACCATGCGAGACGGGC 62.951 63.158 0.00 0.00 0.00 6.13
4078 4221 4.148825 GACCATGCGAGACGGGCT 62.149 66.667 0.00 0.00 0.00 5.19
4079 4222 4.457496 ACCATGCGAGACGGGCTG 62.457 66.667 0.00 0.00 0.00 4.85
4080 4223 4.147449 CCATGCGAGACGGGCTGA 62.147 66.667 0.00 0.00 0.00 4.26
4081 4224 2.107750 CATGCGAGACGGGCTGAT 59.892 61.111 0.00 0.00 0.00 2.90
4082 4225 1.522355 CATGCGAGACGGGCTGATT 60.522 57.895 0.00 0.00 0.00 2.57
4083 4226 1.091771 CATGCGAGACGGGCTGATTT 61.092 55.000 0.00 0.00 0.00 2.17
4084 4227 0.392998 ATGCGAGACGGGCTGATTTT 60.393 50.000 0.00 0.00 0.00 1.82
4085 4228 0.605319 TGCGAGACGGGCTGATTTTT 60.605 50.000 0.00 0.00 0.00 1.94
4086 4229 0.179189 GCGAGACGGGCTGATTTTTG 60.179 55.000 0.00 0.00 0.00 2.44
4087 4230 0.179189 CGAGACGGGCTGATTTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
4088 4231 1.168714 GAGACGGGCTGATTTTTGCT 58.831 50.000 0.00 0.00 0.00 3.91
4090 4233 2.747446 GAGACGGGCTGATTTTTGCTAA 59.253 45.455 0.00 0.00 0.00 3.09
4091 4234 2.749621 AGACGGGCTGATTTTTGCTAAG 59.250 45.455 0.00 0.00 0.00 2.18
4092 4235 2.488153 GACGGGCTGATTTTTGCTAAGT 59.512 45.455 0.00 0.00 0.00 2.24
4093 4236 2.488153 ACGGGCTGATTTTTGCTAAGTC 59.512 45.455 0.00 0.00 0.00 3.01
4094 4237 2.159379 CGGGCTGATTTTTGCTAAGTCC 60.159 50.000 0.00 0.00 0.00 3.85
4095 4238 3.092301 GGGCTGATTTTTGCTAAGTCCT 58.908 45.455 0.00 0.00 29.74 3.85
4099 4242 6.325596 GGCTGATTTTTGCTAAGTCCTTTAG 58.674 40.000 0.00 0.00 41.46 1.85
4100 4243 6.325596 GCTGATTTTTGCTAAGTCCTTTAGG 58.674 40.000 0.00 0.00 39.36 2.69
4102 4245 7.214467 TGATTTTTGCTAAGTCCTTTAGGTG 57.786 36.000 0.00 0.00 39.36 4.00
4103 4246 6.775629 TGATTTTTGCTAAGTCCTTTAGGTGT 59.224 34.615 0.00 0.00 39.36 4.16
4104 4247 7.940137 TGATTTTTGCTAAGTCCTTTAGGTGTA 59.060 33.333 0.00 0.00 39.36 2.90
4122 4265 5.813080 GTGTAACCAATTAGAAGCCGAAT 57.187 39.130 0.00 0.00 0.00 3.34
4123 4266 6.190954 GTGTAACCAATTAGAAGCCGAATT 57.809 37.500 0.00 0.00 0.00 2.17
4124 4267 7.311364 GTGTAACCAATTAGAAGCCGAATTA 57.689 36.000 0.00 0.00 0.00 1.40
4125 4268 7.407337 GTGTAACCAATTAGAAGCCGAATTAG 58.593 38.462 0.00 0.00 0.00 1.73
4126 4269 7.279313 GTGTAACCAATTAGAAGCCGAATTAGA 59.721 37.037 0.00 0.00 0.00 2.10
4127 4270 7.990886 TGTAACCAATTAGAAGCCGAATTAGAT 59.009 33.333 0.00 0.00 0.00 1.98
4128 4271 7.881775 AACCAATTAGAAGCCGAATTAGATT 57.118 32.000 0.00 0.00 0.00 2.40
4130 4273 7.283329 ACCAATTAGAAGCCGAATTAGATTCT 58.717 34.615 11.79 11.79 37.13 2.40
4131 4274 7.442666 ACCAATTAGAAGCCGAATTAGATTCTC 59.557 37.037 10.74 0.00 37.13 2.87
4132 4275 7.659390 CCAATTAGAAGCCGAATTAGATTCTCT 59.341 37.037 10.74 0.44 37.13 3.10
4133 4276 8.494347 CAATTAGAAGCCGAATTAGATTCTCTG 58.506 37.037 10.74 5.49 37.13 3.35
4135 4278 3.827008 AGCCGAATTAGATTCTCTGCA 57.173 42.857 0.00 0.00 37.13 4.41
4136 4279 4.142609 AGCCGAATTAGATTCTCTGCAA 57.857 40.909 0.00 0.00 37.13 4.08
4137 4280 4.125703 AGCCGAATTAGATTCTCTGCAAG 58.874 43.478 0.00 0.00 37.13 4.01
4138 4281 3.873952 GCCGAATTAGATTCTCTGCAAGT 59.126 43.478 0.00 0.00 37.13 3.16
4139 4282 5.050490 GCCGAATTAGATTCTCTGCAAGTA 58.950 41.667 0.00 0.00 37.13 2.24
4140 4283 5.523916 GCCGAATTAGATTCTCTGCAAGTAA 59.476 40.000 0.00 0.00 37.13 2.24
4141 4284 6.203723 GCCGAATTAGATTCTCTGCAAGTAAT 59.796 38.462 0.00 0.00 37.13 1.89
4142 4285 7.570324 GCCGAATTAGATTCTCTGCAAGTAATC 60.570 40.741 6.50 6.50 37.54 1.75
4143 4286 7.439356 CCGAATTAGATTCTCTGCAAGTAATCA 59.561 37.037 13.83 0.00 38.77 2.57
4183 4326 2.029828 CCATATGGTGAGACTACTCGGC 60.030 54.545 14.09 0.00 45.25 5.54
4184 4327 1.306148 TATGGTGAGACTACTCGGCG 58.694 55.000 0.00 0.00 45.25 6.46
4185 4328 1.384989 ATGGTGAGACTACTCGGCGG 61.385 60.000 7.21 0.00 45.25 6.13
4186 4329 2.102553 GTGAGACTACTCGGCGGC 59.897 66.667 7.21 0.00 45.25 6.53
4188 4331 1.974875 TGAGACTACTCGGCGGCAA 60.975 57.895 10.53 0.00 45.25 4.52
4189 4332 1.320344 TGAGACTACTCGGCGGCAAT 61.320 55.000 10.53 0.00 45.25 3.56
4190 4333 0.666913 GAGACTACTCGGCGGCAATA 59.333 55.000 10.53 0.00 33.32 1.90
4191 4334 1.269998 GAGACTACTCGGCGGCAATAT 59.730 52.381 10.53 0.00 33.32 1.28
4192 4335 1.687123 AGACTACTCGGCGGCAATATT 59.313 47.619 10.53 0.00 0.00 1.28
4193 4336 2.059541 GACTACTCGGCGGCAATATTC 58.940 52.381 10.53 0.00 0.00 1.75
4194 4337 1.060713 CTACTCGGCGGCAATATTCG 58.939 55.000 10.53 0.00 0.00 3.34
4205 4348 5.484639 CGGCAATATTCGCAAAATATGTG 57.515 39.130 10.63 5.15 41.04 3.21
4206 4349 4.382457 CGGCAATATTCGCAAAATATGTGG 59.618 41.667 10.63 0.00 40.07 4.17
4207 4350 5.527951 GGCAATATTCGCAAAATATGTGGA 58.472 37.500 10.63 0.00 40.07 4.02
4209 4352 5.976534 GCAATATTCGCAAAATATGTGGACA 59.023 36.000 2.91 0.00 40.07 4.02
4210 4353 6.074888 GCAATATTCGCAAAATATGTGGACAC 60.075 38.462 2.91 0.00 40.07 3.67
4211 4354 6.942532 ATATTCGCAAAATATGTGGACACT 57.057 33.333 3.91 0.00 40.07 3.55
4212 4355 8.341903 CAATATTCGCAAAATATGTGGACACTA 58.658 33.333 3.91 0.00 40.07 2.74
4213 4356 5.794687 TTCGCAAAATATGTGGACACTAG 57.205 39.130 3.91 0.00 40.07 2.57
4214 4357 4.827692 TCGCAAAATATGTGGACACTAGT 58.172 39.130 3.91 0.00 40.07 2.57
4215 4358 5.968254 TCGCAAAATATGTGGACACTAGTA 58.032 37.500 0.00 0.00 40.07 1.82
4216 4359 6.578944 TCGCAAAATATGTGGACACTAGTAT 58.421 36.000 0.00 0.00 40.07 2.12
4217 4360 7.045416 TCGCAAAATATGTGGACACTAGTATT 58.955 34.615 0.00 3.95 40.07 1.89
4218 4361 7.551262 TCGCAAAATATGTGGACACTAGTATTT 59.449 33.333 0.00 8.82 40.07 1.40
4226 4369 6.342906 TGTGGACACTAGTATTTTAATCGGG 58.657 40.000 0.00 0.00 0.00 5.14
4227 4370 6.154877 TGTGGACACTAGTATTTTAATCGGGA 59.845 38.462 0.00 0.00 0.00 5.14
4228 4371 7.043565 GTGGACACTAGTATTTTAATCGGGAA 58.956 38.462 0.00 0.00 0.00 3.97
4229 4372 7.224167 GTGGACACTAGTATTTTAATCGGGAAG 59.776 40.741 0.00 0.00 0.00 3.46
4230 4373 6.704937 GGACACTAGTATTTTAATCGGGAAGG 59.295 42.308 0.00 0.00 0.00 3.46
4231 4374 7.191593 ACACTAGTATTTTAATCGGGAAGGT 57.808 36.000 0.00 0.00 0.00 3.50
4232 4375 7.270779 ACACTAGTATTTTAATCGGGAAGGTC 58.729 38.462 0.00 0.00 0.00 3.85
4234 4377 5.349061 AGTATTTTAATCGGGAAGGTCGT 57.651 39.130 0.00 0.00 0.00 4.34
4235 4378 5.737860 AGTATTTTAATCGGGAAGGTCGTT 58.262 37.500 0.00 0.00 0.00 3.85
4236 4379 6.175471 AGTATTTTAATCGGGAAGGTCGTTT 58.825 36.000 0.00 0.00 0.00 3.60
4237 4380 7.330262 AGTATTTTAATCGGGAAGGTCGTTTA 58.670 34.615 0.00 0.00 0.00 2.01
4240 4383 8.735692 ATTTTAATCGGGAAGGTCGTTTATAA 57.264 30.769 0.00 0.00 0.00 0.98
4241 4384 7.775397 TTTAATCGGGAAGGTCGTTTATAAG 57.225 36.000 0.00 0.00 0.00 1.73
4243 4386 2.496871 TCGGGAAGGTCGTTTATAAGCA 59.503 45.455 0.06 0.00 0.00 3.91
4244 4387 3.133362 TCGGGAAGGTCGTTTATAAGCAT 59.867 43.478 0.06 0.00 0.00 3.79
4246 4389 4.260620 CGGGAAGGTCGTTTATAAGCATTG 60.261 45.833 0.06 0.00 0.00 2.82
4247 4390 4.638865 GGGAAGGTCGTTTATAAGCATTGT 59.361 41.667 0.06 0.00 0.00 2.71
4249 4392 6.316890 GGGAAGGTCGTTTATAAGCATTGTTA 59.683 38.462 0.06 0.00 0.00 2.41
4250 4393 7.012989 GGGAAGGTCGTTTATAAGCATTGTTAT 59.987 37.037 0.06 0.00 0.00 1.89
4251 4394 9.048446 GGAAGGTCGTTTATAAGCATTGTTATA 57.952 33.333 0.06 0.00 0.00 0.98
4264 4407 8.985315 AAGCATTGTTATAGATCTTGGAATCA 57.015 30.769 0.00 0.00 0.00 2.57
4265 4408 8.985315 AGCATTGTTATAGATCTTGGAATCAA 57.015 30.769 0.00 0.73 0.00 2.57
4273 4416 2.858622 CTTGGAATCAAGCGGCTCA 58.141 52.632 1.45 0.00 43.10 4.26
4274 4417 1.386533 CTTGGAATCAAGCGGCTCAT 58.613 50.000 1.45 0.00 43.10 2.90
4277 4420 0.379669 GGAATCAAGCGGCTCATGTG 59.620 55.000 1.45 0.00 0.00 3.21
4278 4421 0.248377 GAATCAAGCGGCTCATGTGC 60.248 55.000 11.30 11.30 0.00 4.57
4279 4422 0.679002 AATCAAGCGGCTCATGTGCT 60.679 50.000 18.44 8.86 41.60 4.40
4281 4424 0.460811 TCAAGCGGCTCATGTGCTAG 60.461 55.000 18.44 13.76 38.17 3.42
4283 4426 2.202987 GCGGCTCATGTGCTAGCT 60.203 61.111 23.23 0.00 38.80 3.32
4284 4427 2.243264 GCGGCTCATGTGCTAGCTC 61.243 63.158 23.23 13.38 38.80 4.09
4286 4429 0.249784 CGGCTCATGTGCTAGCTCAT 60.250 55.000 23.22 23.22 38.80 2.90
4289 4432 2.290093 GGCTCATGTGCTAGCTCATTTC 59.710 50.000 25.64 17.49 38.80 2.17
4290 4433 2.941064 GCTCATGTGCTAGCTCATTTCA 59.059 45.455 25.64 13.77 35.80 2.69
4291 4434 3.376234 GCTCATGTGCTAGCTCATTTCAA 59.624 43.478 25.64 12.88 35.80 2.69
4292 4435 4.036498 GCTCATGTGCTAGCTCATTTCAAT 59.964 41.667 25.64 6.07 35.80 2.57
4294 4437 6.238566 GCTCATGTGCTAGCTCATTTCAATTA 60.239 38.462 25.64 8.07 35.80 1.40
4295 4438 7.019774 TCATGTGCTAGCTCATTTCAATTAC 57.980 36.000 25.64 7.85 0.00 1.89
4298 4441 5.939883 TGTGCTAGCTCATTTCAATTACTGT 59.060 36.000 17.23 0.00 0.00 3.55
4299 4442 7.102993 TGTGCTAGCTCATTTCAATTACTGTA 58.897 34.615 17.23 0.00 0.00 2.74
4300 4443 7.606073 TGTGCTAGCTCATTTCAATTACTGTAA 59.394 33.333 17.23 2.26 0.00 2.41
4301 4444 8.616076 GTGCTAGCTCATTTCAATTACTGTAAT 58.384 33.333 17.23 7.22 0.00 1.89
4302 4445 9.830975 TGCTAGCTCATTTCAATTACTGTAATA 57.169 29.630 17.23 0.00 0.00 0.98
4320 4463 8.594550 ACTGTAATAACACTTCATCTAGTTGGT 58.405 33.333 1.00 0.00 0.00 3.67
4322 4465 9.214957 TGTAATAACACTTCATCTAGTTGGTTG 57.785 33.333 1.00 0.00 0.00 3.77
4325 4468 4.642429 ACACTTCATCTAGTTGGTTGGAC 58.358 43.478 1.00 0.00 0.00 4.02
4326 4469 3.679980 CACTTCATCTAGTTGGTTGGACG 59.320 47.826 1.00 0.00 0.00 4.79
4327 4470 3.576982 ACTTCATCTAGTTGGTTGGACGA 59.423 43.478 1.00 0.00 0.00 4.20
4328 4471 3.868757 TCATCTAGTTGGTTGGACGAG 57.131 47.619 1.00 0.00 0.00 4.18
4332 4475 1.002087 CTAGTTGGTTGGACGAGCCTT 59.998 52.381 0.00 0.00 37.63 4.35
4333 4476 0.250338 AGTTGGTTGGACGAGCCTTC 60.250 55.000 0.00 0.00 37.63 3.46
4334 4477 0.250338 GTTGGTTGGACGAGCCTTCT 60.250 55.000 0.00 0.00 37.63 2.85
4335 4478 1.001633 GTTGGTTGGACGAGCCTTCTA 59.998 52.381 0.00 0.00 37.63 2.10
4336 4479 1.344065 TGGTTGGACGAGCCTTCTAA 58.656 50.000 0.00 0.00 37.63 2.10
4337 4480 1.001633 TGGTTGGACGAGCCTTCTAAC 59.998 52.381 0.00 0.00 37.63 2.34
4340 4483 3.400255 GTTGGACGAGCCTTCTAACTTT 58.600 45.455 0.00 0.00 37.63 2.66
4341 4484 4.562143 GGTTGGACGAGCCTTCTAACTTTA 60.562 45.833 0.00 0.00 35.42 1.85
4342 4485 5.176592 GTTGGACGAGCCTTCTAACTTTAT 58.823 41.667 0.00 0.00 37.63 1.40
4343 4486 5.416271 TGGACGAGCCTTCTAACTTTATT 57.584 39.130 0.00 0.00 37.63 1.40
4344 4487 5.175859 TGGACGAGCCTTCTAACTTTATTG 58.824 41.667 0.00 0.00 37.63 1.90
4345 4488 5.176592 GGACGAGCCTTCTAACTTTATTGT 58.823 41.667 0.00 0.00 0.00 2.71
4346 4489 5.291371 GGACGAGCCTTCTAACTTTATTGTC 59.709 44.000 0.00 0.00 0.00 3.18
4347 4490 5.790593 ACGAGCCTTCTAACTTTATTGTCA 58.209 37.500 0.00 0.00 0.00 3.58
4348 4491 5.869888 ACGAGCCTTCTAACTTTATTGTCAG 59.130 40.000 0.00 0.00 0.00 3.51
4349 4492 5.869888 CGAGCCTTCTAACTTTATTGTCAGT 59.130 40.000 0.00 0.00 0.00 3.41
4350 4493 7.033791 CGAGCCTTCTAACTTTATTGTCAGTA 58.966 38.462 0.00 0.00 0.00 2.74
4351 4494 7.544566 CGAGCCTTCTAACTTTATTGTCAGTAA 59.455 37.037 0.00 0.00 0.00 2.24
4352 4495 9.216117 GAGCCTTCTAACTTTATTGTCAGTAAA 57.784 33.333 1.14 1.14 0.00 2.01
4354 4497 9.000486 GCCTTCTAACTTTATTGTCAGTAAACT 58.000 33.333 0.00 0.00 0.00 2.66
4357 4500 9.754382 TTCTAACTTTATTGTCAGTAAACTCGT 57.246 29.630 0.00 0.00 0.00 4.18
4361 4504 8.739649 ACTTTATTGTCAGTAAACTCGTAGAC 57.260 34.615 0.00 0.00 0.00 2.59
4362 4505 7.536622 ACTTTATTGTCAGTAAACTCGTAGACG 59.463 37.037 0.00 0.00 41.45 4.18
4375 4518 3.002791 TCGTAGACGATGTAAACGACCT 58.997 45.455 0.00 0.00 44.22 3.85
4376 4519 3.436704 TCGTAGACGATGTAAACGACCTT 59.563 43.478 0.00 0.00 44.22 3.50
4377 4520 3.782893 CGTAGACGATGTAAACGACCTTC 59.217 47.826 0.00 0.00 43.02 3.46
4378 4521 3.227810 AGACGATGTAAACGACCTTCC 57.772 47.619 0.00 0.00 34.88 3.46
4380 4523 2.921754 GACGATGTAAACGACCTTCCTG 59.078 50.000 0.00 0.00 34.88 3.86
4381 4524 2.559668 ACGATGTAAACGACCTTCCTGA 59.440 45.455 0.00 0.00 34.88 3.86
4382 4525 3.194968 ACGATGTAAACGACCTTCCTGAT 59.805 43.478 0.00 0.00 34.88 2.90
4384 4527 4.630069 CGATGTAAACGACCTTCCTGATTT 59.370 41.667 0.00 0.00 31.90 2.17
4385 4528 5.220416 CGATGTAAACGACCTTCCTGATTTC 60.220 44.000 0.00 0.00 31.90 2.17
4386 4529 4.963373 TGTAAACGACCTTCCTGATTTCA 58.037 39.130 0.00 0.00 0.00 2.69
4388 4531 5.411361 TGTAAACGACCTTCCTGATTTCATG 59.589 40.000 0.00 0.00 0.00 3.07
4389 4532 3.703001 ACGACCTTCCTGATTTCATGT 57.297 42.857 0.00 0.00 0.00 3.21
4390 4533 3.338249 ACGACCTTCCTGATTTCATGTG 58.662 45.455 0.00 0.00 0.00 3.21
4391 4534 2.679837 CGACCTTCCTGATTTCATGTGG 59.320 50.000 0.00 0.00 0.00 4.17
4392 4535 3.619733 CGACCTTCCTGATTTCATGTGGA 60.620 47.826 0.00 0.00 0.00 4.02
4393 4536 4.530875 GACCTTCCTGATTTCATGTGGAT 58.469 43.478 0.00 0.00 0.00 3.41
4395 4538 5.336102 ACCTTCCTGATTTCATGTGGATTT 58.664 37.500 0.00 0.00 0.00 2.17
4396 4539 5.420104 ACCTTCCTGATTTCATGTGGATTTC 59.580 40.000 0.00 0.00 0.00 2.17
4398 4541 5.197224 TCCTGATTTCATGTGGATTTCCT 57.803 39.130 0.00 0.00 36.82 3.36
4399 4542 5.195940 TCCTGATTTCATGTGGATTTCCTC 58.804 41.667 0.00 0.00 36.82 3.71
4401 4544 5.655532 CCTGATTTCATGTGGATTTCCTCTT 59.344 40.000 0.00 0.00 36.82 2.85
4403 4546 6.012113 TGATTTCATGTGGATTTCCTCTTGT 58.988 36.000 11.85 0.00 36.58 3.16
4405 4548 5.710513 TTCATGTGGATTTCCTCTTGTTG 57.289 39.130 11.85 2.05 36.58 3.33
4406 4549 4.081406 TCATGTGGATTTCCTCTTGTTGG 58.919 43.478 11.85 0.00 36.58 3.77
4407 4550 2.875296 TGTGGATTTCCTCTTGTTGGG 58.125 47.619 0.00 0.00 36.82 4.12
4408 4551 2.445145 TGTGGATTTCCTCTTGTTGGGA 59.555 45.455 0.00 0.00 36.82 4.37
4409 4552 3.075882 TGTGGATTTCCTCTTGTTGGGAT 59.924 43.478 0.00 0.00 36.82 3.85
4411 4554 3.593328 TGGATTTCCTCTTGTTGGGATCT 59.407 43.478 0.00 0.00 36.82 2.75
4412 4555 3.950395 GGATTTCCTCTTGTTGGGATCTG 59.050 47.826 0.00 0.00 0.00 2.90
4414 4557 4.722526 TTTCCTCTTGTTGGGATCTGAA 57.277 40.909 0.00 0.00 0.00 3.02
4415 4558 3.988976 TCCTCTTGTTGGGATCTGAAG 57.011 47.619 0.00 0.00 0.00 3.02
4417 4560 2.363683 CTCTTGTTGGGATCTGAAGGC 58.636 52.381 0.00 0.00 0.00 4.35
4418 4561 1.004745 TCTTGTTGGGATCTGAAGGCC 59.995 52.381 0.00 0.00 0.00 5.19
4419 4562 1.005215 CTTGTTGGGATCTGAAGGCCT 59.995 52.381 0.00 0.00 0.00 5.19
4420 4563 1.075601 TGTTGGGATCTGAAGGCCTT 58.924 50.000 20.65 20.65 0.00 4.35
4421 4564 1.272092 TGTTGGGATCTGAAGGCCTTG 60.272 52.381 26.25 9.99 0.00 3.61
4422 4565 1.004745 GTTGGGATCTGAAGGCCTTGA 59.995 52.381 26.25 15.07 0.00 3.02
4423 4566 1.600058 TGGGATCTGAAGGCCTTGAT 58.400 50.000 26.25 20.31 0.00 2.57
4424 4567 1.492176 TGGGATCTGAAGGCCTTGATC 59.508 52.381 26.78 26.78 35.78 2.92
4425 4568 2.268762 GGATCTGAAGGCCTTGATCC 57.731 55.000 33.14 33.14 45.19 3.36
4427 4570 0.849417 ATCTGAAGGCCTTGATCCCC 59.151 55.000 26.25 7.81 0.00 4.81
4428 4571 0.253347 TCTGAAGGCCTTGATCCCCT 60.253 55.000 26.25 0.00 0.00 4.79
4429 4572 1.009552 TCTGAAGGCCTTGATCCCCTA 59.990 52.381 26.25 0.00 0.00 3.53
4431 4574 2.444766 CTGAAGGCCTTGATCCCCTAAT 59.555 50.000 26.25 0.00 0.00 1.73
4433 4576 2.212752 AGGCCTTGATCCCCTAATGA 57.787 50.000 0.00 0.00 0.00 2.57
4434 4577 2.502745 AGGCCTTGATCCCCTAATGAA 58.497 47.619 0.00 0.00 0.00 2.57
4459 4683 4.408276 TGGTTTTGAAATCATTCGGGGTA 58.592 39.130 0.00 0.00 38.46 3.69
4470 4694 9.245962 GAAATCATTCGGGGTAGTATTATATCG 57.754 37.037 0.00 0.00 0.00 2.92
4476 4700 6.913170 TCGGGGTAGTATTATATCGAACAAC 58.087 40.000 0.00 0.00 0.00 3.32
4479 4703 7.121168 CGGGGTAGTATTATATCGAACAACCTA 59.879 40.741 0.00 0.00 0.00 3.08
4494 4718 7.446013 TCGAACAACCTATTTAGTGTGGATTTT 59.554 33.333 0.00 0.00 0.00 1.82
4510 4734 4.523943 TGGATTTTCTGTTGTTGGGATCTG 59.476 41.667 0.00 0.00 0.00 2.90
4525 4749 2.172293 GGATCTGAAGGCCTTGATCTGT 59.828 50.000 30.39 12.90 36.51 3.41
4528 4752 2.026822 TCTGAAGGCCTTGATCTGTTCC 60.027 50.000 26.25 5.30 0.00 3.62
4545 4769 5.073144 TCTGTTCCCAGACTACCATTCTTTT 59.927 40.000 0.00 0.00 42.80 2.27
4579 4803 1.143073 AGGAGGGTTGGTCTGTTGTTC 59.857 52.381 0.00 0.00 0.00 3.18
4584 4808 0.464916 GTTGGTCTGTTGTTCCCCGT 60.465 55.000 0.00 0.00 0.00 5.28
4597 4821 1.358152 TCCCCGTTCCAGAAATCACT 58.642 50.000 0.00 0.00 0.00 3.41
4598 4822 1.003118 TCCCCGTTCCAGAAATCACTG 59.997 52.381 0.00 0.00 37.61 3.66
4599 4823 1.271379 CCCCGTTCCAGAAATCACTGT 60.271 52.381 0.00 0.00 36.30 3.55
4613 4837 5.557891 AATCACTGTTCTTATGCTTCTGC 57.442 39.130 0.00 0.00 40.20 4.26
4619 4843 2.742053 GTTCTTATGCTTCTGCGGTTCA 59.258 45.455 0.00 0.00 43.34 3.18
4626 4850 0.674581 CTTCTGCGGTTCATGAGCCA 60.675 55.000 26.00 8.73 0.00 4.75
4640 4864 3.126001 TGAGCCACGTTTCTTTGATCT 57.874 42.857 0.00 0.00 0.00 2.75
4641 4865 3.476552 TGAGCCACGTTTCTTTGATCTT 58.523 40.909 0.00 0.00 0.00 2.40
4656 4880 2.897326 TGATCTTGGTCGTTCTTCAGGA 59.103 45.455 0.00 0.00 0.00 3.86
4687 4911 4.971939 TCCTCAATCATGTTCTGTGTTCA 58.028 39.130 0.00 0.00 0.00 3.18
4692 4916 5.065859 TCAATCATGTTCTGTGTTCAAACGT 59.934 36.000 0.00 0.00 0.00 3.99
4714 4938 6.873605 ACGTATTGATTCAGTTCATCAGTCAA 59.126 34.615 0.00 0.00 32.20 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.142262 AGTTGGTGGTTAGGTGTGGTC 59.858 52.381 0.00 0.00 0.00 4.02
46 47 3.382546 GGGAAGCTGGTCATTAGTACGTA 59.617 47.826 0.00 0.00 0.00 3.57
59 62 1.134670 CGTCTAAGGAAGGGAAGCTGG 60.135 57.143 0.00 0.00 0.00 4.85
97 100 2.743664 TGTGACGCAATTGAGATGGAAG 59.256 45.455 16.56 0.00 0.00 3.46
225 228 3.895656 TCCGTGGAGTTAATAGAGGATGG 59.104 47.826 0.00 0.00 0.00 3.51
226 229 4.585162 AGTCCGTGGAGTTAATAGAGGATG 59.415 45.833 0.00 0.00 0.00 3.51
227 230 4.805744 AGTCCGTGGAGTTAATAGAGGAT 58.194 43.478 0.00 0.00 0.00 3.24
228 231 4.205587 GAGTCCGTGGAGTTAATAGAGGA 58.794 47.826 0.00 0.00 0.00 3.71
230 233 3.318557 GGGAGTCCGTGGAGTTAATAGAG 59.681 52.174 2.26 0.00 0.00 2.43
231 234 3.294214 GGGAGTCCGTGGAGTTAATAGA 58.706 50.000 2.26 0.00 0.00 1.98
311 321 2.032680 TAAATTCTAGTGGTGGCGGC 57.967 50.000 0.00 0.00 0.00 6.53
352 362 2.800544 CTCATGTCGTTTCGTTCTTGGT 59.199 45.455 0.00 0.00 0.00 3.67
396 416 6.179756 GGGAACGTACCCCTAAGAAAAATAA 58.820 40.000 16.37 0.00 43.81 1.40
397 417 5.744171 GGGAACGTACCCCTAAGAAAAATA 58.256 41.667 16.37 0.00 43.81 1.40
398 418 4.592942 GGGAACGTACCCCTAAGAAAAAT 58.407 43.478 16.37 0.00 43.81 1.82
399 419 4.019792 GGGAACGTACCCCTAAGAAAAA 57.980 45.455 16.37 0.00 43.81 1.94
400 420 3.701205 GGGAACGTACCCCTAAGAAAA 57.299 47.619 16.37 0.00 43.81 2.29
442 462 4.849329 CGCTGTCTCGTACCGGCC 62.849 72.222 0.00 0.00 0.00 6.13
443 463 4.849329 CCGCTGTCTCGTACCGGC 62.849 72.222 0.00 0.00 31.87 6.13
854 900 0.321387 CCGGCTGCTGCTATGATCAT 60.321 55.000 13.81 13.81 39.59 2.45
855 901 1.070275 CCGGCTGCTGCTATGATCA 59.930 57.895 15.64 0.00 39.59 2.92
856 902 0.318441 TACCGGCTGCTGCTATGATC 59.682 55.000 15.64 0.00 39.59 2.92
857 903 0.034059 GTACCGGCTGCTGCTATGAT 59.966 55.000 15.64 0.00 39.59 2.45
858 904 1.326951 TGTACCGGCTGCTGCTATGA 61.327 55.000 15.64 0.00 39.59 2.15
860 906 1.144057 GTGTACCGGCTGCTGCTAT 59.856 57.895 15.64 4.01 39.59 2.97
861 907 2.279810 TGTGTACCGGCTGCTGCTA 61.280 57.895 15.64 0.00 39.59 3.49
862 908 3.625897 TGTGTACCGGCTGCTGCT 61.626 61.111 15.64 0.00 39.59 4.24
863 909 3.423154 GTGTGTACCGGCTGCTGC 61.423 66.667 0.00 7.10 38.76 5.25
864 910 0.955428 AATGTGTGTACCGGCTGCTG 60.955 55.000 0.00 0.26 0.00 4.41
865 911 0.673644 GAATGTGTGTACCGGCTGCT 60.674 55.000 0.00 0.00 0.00 4.24
866 912 0.953471 TGAATGTGTGTACCGGCTGC 60.953 55.000 0.00 0.00 0.00 5.25
867 913 1.737838 ATGAATGTGTGTACCGGCTG 58.262 50.000 0.00 0.00 0.00 4.85
868 914 2.235155 TGTATGAATGTGTGTACCGGCT 59.765 45.455 0.00 0.00 0.00 5.52
869 915 2.623535 TGTATGAATGTGTGTACCGGC 58.376 47.619 0.00 0.00 0.00 6.13
870 916 5.353111 TGTATGTATGAATGTGTGTACCGG 58.647 41.667 0.00 0.00 0.00 5.28
871 917 7.438160 AGAATGTATGTATGAATGTGTGTACCG 59.562 37.037 0.00 0.00 0.00 4.02
914 960 1.410882 CTCCCCTCACAAGCTAGTAGC 59.589 57.143 14.62 14.62 42.84 3.58
915 961 1.410882 GCTCCCCTCACAAGCTAGTAG 59.589 57.143 0.00 0.00 33.23 2.57
917 963 0.252467 AGCTCCCCTCACAAGCTAGT 60.252 55.000 0.00 0.00 44.28 2.57
1049 1108 0.733566 GCAATGCACCATCAACCACG 60.734 55.000 0.00 0.00 0.00 4.94
1055 1114 3.813143 CGCCGCAATGCACCATCA 61.813 61.111 5.91 0.00 0.00 3.07
1116 1175 2.301583 AGACTGGAAGAGGAACAGAAGC 59.698 50.000 0.00 0.00 37.43 3.86
1250 1320 2.156343 AAGAACGCAGAACAGAGGAC 57.844 50.000 0.00 0.00 0.00 3.85
1275 1345 4.865365 GCAGCTACTACTGGAAACTACTTG 59.135 45.833 0.00 0.00 38.16 3.16
1354 1424 3.429085 CCTCGCTGATAAACAATGCAAC 58.571 45.455 0.00 0.00 0.00 4.17
1367 1437 4.074526 GAGCACTGCCCTCGCTGA 62.075 66.667 0.00 0.00 35.75 4.26
1373 1443 3.710722 CCGGAAGAGCACTGCCCT 61.711 66.667 2.04 0.00 38.62 5.19
1387 1457 1.227764 CCCATGACATGAGCTCCGG 60.228 63.158 17.24 5.67 0.00 5.14
1388 1458 1.227764 CCCCATGACATGAGCTCCG 60.228 63.158 17.24 4.86 0.00 4.63
1463 1544 0.816421 AAAGGAACGTTGGTGGTCCG 60.816 55.000 5.00 0.00 36.30 4.79
1585 1675 4.493547 AGTTGTCATTTGTTTGTGTGTGG 58.506 39.130 0.00 0.00 0.00 4.17
1673 1776 5.805486 TGAACTAACTCGTCATGATACTTGC 59.195 40.000 0.00 0.00 0.00 4.01
1733 1836 3.793144 GCAGTAGGCGTGTGCTGC 61.793 66.667 12.01 12.01 45.70 5.25
1806 1909 8.414778 AGACTAAAAGTTCAGCTAAGCGTATAT 58.585 33.333 0.00 0.00 0.00 0.86
1827 1937 1.334689 CGACAGCGTGACACAAGACTA 60.335 52.381 6.37 0.00 0.00 2.59
1859 1969 0.324614 TCCGTCAGTCCATTGTGCAT 59.675 50.000 0.00 0.00 0.00 3.96
1861 1971 0.798776 CTTCCGTCAGTCCATTGTGC 59.201 55.000 0.00 0.00 0.00 4.57
1862 1972 2.169832 ACTTCCGTCAGTCCATTGTG 57.830 50.000 0.00 0.00 0.00 3.33
1866 1976 2.368875 ACTCAAACTTCCGTCAGTCCAT 59.631 45.455 0.00 0.00 0.00 3.41
1875 1985 1.201921 GCATACGCACTCAAACTTCCG 60.202 52.381 0.00 0.00 38.36 4.30
1892 2002 1.114627 TCGTCAGAGCTACCATGCAT 58.885 50.000 0.00 0.00 34.99 3.96
1967 2077 6.403200 GCCACGTACATCACACAGATTTAATT 60.403 38.462 0.00 0.00 33.72 1.40
2067 2177 1.005294 CCGTCGTCTTGTACCCGTTG 61.005 60.000 0.00 0.00 0.00 4.10
2139 2249 0.824759 AGCCCGAGAAGGTGTACATC 59.175 55.000 0.00 0.00 38.74 3.06
2154 2264 3.635268 CTCCAGCTTCACCCAGCCC 62.635 68.421 0.00 0.00 41.12 5.19
2257 2367 2.032681 GAGGAACGCCCAGCAGTT 59.967 61.111 0.00 0.00 37.41 3.16
2585 2722 6.249951 TCCTCTTCCTCCTCTGCTTATATAC 58.750 44.000 0.00 0.00 0.00 1.47
2586 2723 6.470456 TCCTCTTCCTCCTCTGCTTATATA 57.530 41.667 0.00 0.00 0.00 0.86
2587 2724 5.346782 TCCTCTTCCTCCTCTGCTTATAT 57.653 43.478 0.00 0.00 0.00 0.86
2668 2805 1.367471 CTTGGACGTCTGCTCCACA 59.633 57.895 16.46 0.00 37.54 4.17
2672 2809 0.318762 AAGTCCTTGGACGTCTGCTC 59.681 55.000 16.46 0.00 0.00 4.26
3031 3168 1.151668 AGTGCAGCATCTCGTTGTTC 58.848 50.000 0.00 0.00 0.00 3.18
3205 3342 4.821589 CGGAGGTCCTTGAGCCGC 62.822 72.222 3.95 0.00 35.17 6.53
3273 3410 0.468029 CATGTAGGGGATGTTGGGCC 60.468 60.000 0.00 0.00 0.00 5.80
3726 3863 1.676014 GGCCACTCACATACAGACACC 60.676 57.143 0.00 0.00 0.00 4.16
3766 3907 3.283684 CCGAAACAAGTGCGGGCA 61.284 61.111 0.00 0.00 41.29 5.36
3769 3910 2.458006 GAAGCCCGAAACAAGTGCGG 62.458 60.000 7.53 7.53 44.42 5.69
3771 3912 1.197036 GTAGAAGCCCGAAACAAGTGC 59.803 52.381 0.00 0.00 0.00 4.40
3772 3913 1.804748 GGTAGAAGCCCGAAACAAGTG 59.195 52.381 0.00 0.00 0.00 3.16
3773 3914 1.697982 AGGTAGAAGCCCGAAACAAGT 59.302 47.619 0.00 0.00 0.00 3.16
3774 3915 2.347731 GAGGTAGAAGCCCGAAACAAG 58.652 52.381 0.00 0.00 0.00 3.16
3857 4000 2.222863 CCGTAATTAGGCGAAACAACCG 60.223 50.000 0.00 0.00 0.00 4.44
3858 4001 2.743664 ACCGTAATTAGGCGAAACAACC 59.256 45.455 0.00 0.00 0.00 3.77
3859 4002 5.063817 ACATACCGTAATTAGGCGAAACAAC 59.936 40.000 0.00 0.00 0.00 3.32
3860 4003 5.177326 ACATACCGTAATTAGGCGAAACAA 58.823 37.500 0.00 0.00 0.00 2.83
3861 4004 4.757594 ACATACCGTAATTAGGCGAAACA 58.242 39.130 0.00 0.00 0.00 2.83
3866 4009 5.510674 CGAATAGACATACCGTAATTAGGCG 59.489 44.000 0.00 0.00 0.00 5.52
3867 4010 6.615088 TCGAATAGACATACCGTAATTAGGC 58.385 40.000 0.00 0.00 0.00 3.93
3868 4011 6.746364 GCTCGAATAGACATACCGTAATTAGG 59.254 42.308 0.00 0.00 0.00 2.69
3869 4012 7.303261 TGCTCGAATAGACATACCGTAATTAG 58.697 38.462 0.00 0.00 0.00 1.73
3870 4013 7.205737 TGCTCGAATAGACATACCGTAATTA 57.794 36.000 0.00 0.00 0.00 1.40
3871 4014 6.080648 TGCTCGAATAGACATACCGTAATT 57.919 37.500 0.00 0.00 0.00 1.40
3872 4015 5.700722 TGCTCGAATAGACATACCGTAAT 57.299 39.130 0.00 0.00 0.00 1.89
3873 4016 5.503662 TTGCTCGAATAGACATACCGTAA 57.496 39.130 0.00 0.00 0.00 3.18
3875 4018 4.110482 GTTTGCTCGAATAGACATACCGT 58.890 43.478 0.00 0.00 0.00 4.83
3876 4019 3.179795 CGTTTGCTCGAATAGACATACCG 59.820 47.826 0.00 0.00 0.00 4.02
3877 4020 4.206609 GTCGTTTGCTCGAATAGACATACC 59.793 45.833 0.00 0.00 41.47 2.73
3878 4021 5.035443 AGTCGTTTGCTCGAATAGACATAC 58.965 41.667 0.00 0.00 41.47 2.39
3879 4022 5.244785 AGTCGTTTGCTCGAATAGACATA 57.755 39.130 0.00 0.00 41.47 2.29
3880 4023 4.111375 AGTCGTTTGCTCGAATAGACAT 57.889 40.909 0.00 0.00 41.47 3.06
3881 4024 3.570926 AGTCGTTTGCTCGAATAGACA 57.429 42.857 0.00 0.00 41.47 3.41
3882 4025 5.035443 ACATAGTCGTTTGCTCGAATAGAC 58.965 41.667 10.75 0.00 42.02 2.59
3883 4026 5.066117 AGACATAGTCGTTTGCTCGAATAGA 59.934 40.000 10.75 0.00 42.02 1.98
3884 4027 5.274718 AGACATAGTCGTTTGCTCGAATAG 58.725 41.667 10.75 7.07 42.02 1.73
3885 4028 5.244785 AGACATAGTCGTTTGCTCGAATA 57.755 39.130 8.43 8.43 42.68 1.75
3886 4029 4.111375 AGACATAGTCGTTTGCTCGAAT 57.889 40.909 5.16 5.16 41.47 3.34
3887 4030 3.570926 AGACATAGTCGTTTGCTCGAA 57.429 42.857 0.00 0.00 41.47 3.71
3888 4031 3.499048 GAAGACATAGTCGTTTGCTCGA 58.501 45.455 0.00 0.00 37.67 4.04
3889 4032 2.276540 CGAAGACATAGTCGTTTGCTCG 59.723 50.000 0.00 0.00 37.67 5.03
3919 4062 9.084164 AGTAGTACACGTCATAATCATTTGTTC 57.916 33.333 2.52 0.00 0.00 3.18
3936 4079 1.399791 CCCTTCGTCCGAGTAGTACAC 59.600 57.143 2.52 0.00 0.00 2.90
3939 4082 0.620556 ACCCCTTCGTCCGAGTAGTA 59.379 55.000 0.00 0.00 0.00 1.82
3940 4083 0.251519 AACCCCTTCGTCCGAGTAGT 60.252 55.000 0.00 0.00 0.00 2.73
3942 4085 1.252904 CCAACCCCTTCGTCCGAGTA 61.253 60.000 0.00 0.00 0.00 2.59
3944 4087 2.264794 CCAACCCCTTCGTCCGAG 59.735 66.667 0.00 0.00 0.00 4.63
3945 4088 2.524887 ACCAACCCCTTCGTCCGA 60.525 61.111 0.00 0.00 0.00 4.55
3948 4091 0.672711 GTAGCACCAACCCCTTCGTC 60.673 60.000 0.00 0.00 0.00 4.20
3949 4092 1.373812 GTAGCACCAACCCCTTCGT 59.626 57.895 0.00 0.00 0.00 3.85
3951 4094 1.376812 CCGTAGCACCAACCCCTTC 60.377 63.158 0.00 0.00 0.00 3.46
3952 4095 2.754375 CCGTAGCACCAACCCCTT 59.246 61.111 0.00 0.00 0.00 3.95
3953 4096 4.029809 GCCGTAGCACCAACCCCT 62.030 66.667 0.00 0.00 39.53 4.79
3957 4100 2.918230 ATAGCCGCCGTAGCACCAAC 62.918 60.000 0.00 0.00 39.83 3.77
3958 4101 2.638330 GATAGCCGCCGTAGCACCAA 62.638 60.000 0.00 0.00 39.83 3.67
3959 4102 3.146726 GATAGCCGCCGTAGCACCA 62.147 63.158 0.00 0.00 39.83 4.17
3960 4103 2.355956 GATAGCCGCCGTAGCACC 60.356 66.667 0.00 0.00 39.83 5.01
3961 4104 1.006102 ATGATAGCCGCCGTAGCAC 60.006 57.895 0.00 0.00 39.83 4.40
3962 4105 1.006220 CATGATAGCCGCCGTAGCA 60.006 57.895 0.00 0.00 39.83 3.49
3963 4106 2.383527 GCATGATAGCCGCCGTAGC 61.384 63.158 0.00 0.00 0.00 3.58
3965 4108 2.049526 CGCATGATAGCCGCCGTA 60.050 61.111 0.00 0.00 0.00 4.02
3966 4109 4.221422 ACGCATGATAGCCGCCGT 62.221 61.111 0.00 0.00 0.00 5.68
3968 4111 1.669115 ATCACGCATGATAGCCGCC 60.669 57.895 0.00 0.00 44.11 6.13
3969 4112 0.945743 TCATCACGCATGATAGCCGC 60.946 55.000 0.00 0.00 44.13 6.53
3970 4113 0.786581 GTCATCACGCATGATAGCCG 59.213 55.000 0.00 0.00 44.13 5.52
3971 4114 1.869774 TGTCATCACGCATGATAGCC 58.130 50.000 0.00 0.00 44.13 3.93
3973 4116 3.873361 ACCTTTGTCATCACGCATGATAG 59.127 43.478 0.00 0.00 44.13 2.08
3974 4117 3.872696 ACCTTTGTCATCACGCATGATA 58.127 40.909 0.00 0.00 44.13 2.15
3977 4120 4.621068 ATTACCTTTGTCATCACGCATG 57.379 40.909 0.00 0.00 0.00 4.06
3978 4121 5.643379 AAATTACCTTTGTCATCACGCAT 57.357 34.783 0.00 0.00 0.00 4.73
4004 4147 1.555967 TAAACTTGCATGGGGCTTCC 58.444 50.000 4.44 0.00 45.15 3.46
4005 4148 3.068165 GGTATAAACTTGCATGGGGCTTC 59.932 47.826 4.44 0.00 45.15 3.86
4008 4151 2.666317 AGGTATAAACTTGCATGGGGC 58.334 47.619 4.44 0.00 45.13 5.80
4009 4152 4.695455 CGATAGGTATAAACTTGCATGGGG 59.305 45.833 4.44 0.00 0.00 4.96
4010 4153 4.154195 GCGATAGGTATAAACTTGCATGGG 59.846 45.833 4.44 0.00 0.00 4.00
4011 4154 4.143115 CGCGATAGGTATAAACTTGCATGG 60.143 45.833 0.00 0.00 0.00 3.66
4012 4155 4.143115 CCGCGATAGGTATAAACTTGCATG 60.143 45.833 8.23 0.00 0.00 4.06
4013 4156 3.994392 CCGCGATAGGTATAAACTTGCAT 59.006 43.478 8.23 0.00 0.00 3.96
4014 4157 3.181473 ACCGCGATAGGTATAAACTTGCA 60.181 43.478 8.23 0.00 43.89 4.08
4015 4158 3.183775 CACCGCGATAGGTATAAACTTGC 59.816 47.826 8.23 0.00 43.89 4.01
4016 4159 3.739300 CCACCGCGATAGGTATAAACTTG 59.261 47.826 8.23 0.00 43.89 3.16
4019 4162 3.648339 TCCACCGCGATAGGTATAAAC 57.352 47.619 8.23 0.00 43.89 2.01
4022 4165 1.475280 GCATCCACCGCGATAGGTATA 59.525 52.381 8.23 0.00 43.89 1.47
4023 4166 0.246635 GCATCCACCGCGATAGGTAT 59.753 55.000 8.23 0.00 43.89 2.73
4024 4167 1.110518 TGCATCCACCGCGATAGGTA 61.111 55.000 8.23 0.00 43.89 3.08
4026 4169 0.603707 ATTGCATCCACCGCGATAGG 60.604 55.000 8.23 6.37 31.50 2.57
4027 4170 2.078849 TATTGCATCCACCGCGATAG 57.921 50.000 8.23 0.00 35.14 2.08
4028 4171 2.139917 GTTATTGCATCCACCGCGATA 58.860 47.619 8.23 0.00 35.14 2.92
4029 4172 0.944386 GTTATTGCATCCACCGCGAT 59.056 50.000 8.23 0.00 37.29 4.58
4030 4173 0.391793 TGTTATTGCATCCACCGCGA 60.392 50.000 8.23 0.00 0.00 5.87
4031 4174 0.449786 TTGTTATTGCATCCACCGCG 59.550 50.000 0.00 0.00 0.00 6.46
4032 4175 1.201181 TGTTGTTATTGCATCCACCGC 59.799 47.619 0.00 0.00 0.00 5.68
4034 4177 4.737054 CTTCTGTTGTTATTGCATCCACC 58.263 43.478 0.00 0.00 0.00 4.61
4035 4178 4.168760 GCTTCTGTTGTTATTGCATCCAC 58.831 43.478 0.00 0.00 0.00 4.02
4036 4179 3.825585 TGCTTCTGTTGTTATTGCATCCA 59.174 39.130 0.00 0.00 0.00 3.41
4037 4180 4.439305 TGCTTCTGTTGTTATTGCATCC 57.561 40.909 0.00 0.00 0.00 3.51
4038 4181 6.034256 GTCAATGCTTCTGTTGTTATTGCATC 59.966 38.462 0.00 0.00 38.49 3.91
4040 4183 5.221880 GTCAATGCTTCTGTTGTTATTGCA 58.778 37.500 0.00 0.00 0.00 4.08
4042 4185 5.771469 TGGTCAATGCTTCTGTTGTTATTG 58.229 37.500 0.00 0.00 0.00 1.90
4043 4186 6.392354 CATGGTCAATGCTTCTGTTGTTATT 58.608 36.000 0.00 0.00 0.00 1.40
4045 4188 5.375417 CATGGTCAATGCTTCTGTTGTTA 57.625 39.130 0.00 0.00 0.00 2.41
4057 4200 1.431488 CCCGTCTCGCATGGTCAATG 61.431 60.000 0.00 0.00 39.49 2.82
4058 4201 1.153369 CCCGTCTCGCATGGTCAAT 60.153 57.895 0.00 0.00 0.00 2.57
4059 4202 2.264480 CCCGTCTCGCATGGTCAA 59.736 61.111 0.00 0.00 0.00 3.18
4060 4203 4.451150 GCCCGTCTCGCATGGTCA 62.451 66.667 0.00 0.00 0.00 4.02
4061 4204 4.148825 AGCCCGTCTCGCATGGTC 62.149 66.667 0.00 0.00 0.00 4.02
4062 4205 4.457496 CAGCCCGTCTCGCATGGT 62.457 66.667 0.00 0.00 0.00 3.55
4063 4206 2.930385 AATCAGCCCGTCTCGCATGG 62.930 60.000 0.00 0.00 0.00 3.66
4064 4207 1.091771 AAATCAGCCCGTCTCGCATG 61.092 55.000 0.00 0.00 0.00 4.06
4065 4208 0.392998 AAAATCAGCCCGTCTCGCAT 60.393 50.000 0.00 0.00 0.00 4.73
4067 4210 0.179189 CAAAAATCAGCCCGTCTCGC 60.179 55.000 0.00 0.00 0.00 5.03
4068 4211 0.179189 GCAAAAATCAGCCCGTCTCG 60.179 55.000 0.00 0.00 0.00 4.04
4070 4213 2.489938 TAGCAAAAATCAGCCCGTCT 57.510 45.000 0.00 0.00 0.00 4.18
4071 4214 2.488153 ACTTAGCAAAAATCAGCCCGTC 59.512 45.455 0.00 0.00 0.00 4.79
4072 4215 2.488153 GACTTAGCAAAAATCAGCCCGT 59.512 45.455 0.00 0.00 0.00 5.28
4073 4216 2.159379 GGACTTAGCAAAAATCAGCCCG 60.159 50.000 0.00 0.00 0.00 6.13
4074 4217 3.092301 AGGACTTAGCAAAAATCAGCCC 58.908 45.455 0.00 0.00 0.00 5.19
4075 4218 4.790765 AAGGACTTAGCAAAAATCAGCC 57.209 40.909 0.00 0.00 0.00 4.85
4077 4220 7.040409 ACACCTAAAGGACTTAGCAAAAATCAG 60.040 37.037 2.23 0.00 36.43 2.90
4078 4221 6.775629 ACACCTAAAGGACTTAGCAAAAATCA 59.224 34.615 2.23 0.00 36.43 2.57
4079 4222 7.215719 ACACCTAAAGGACTTAGCAAAAATC 57.784 36.000 2.23 0.00 36.43 2.17
4080 4223 8.573885 GTTACACCTAAAGGACTTAGCAAAAAT 58.426 33.333 2.23 0.00 36.43 1.82
4081 4224 7.013559 GGTTACACCTAAAGGACTTAGCAAAAA 59.986 37.037 2.23 0.00 36.43 1.94
4082 4225 6.487668 GGTTACACCTAAAGGACTTAGCAAAA 59.512 38.462 2.23 0.00 36.43 2.44
4083 4226 5.999600 GGTTACACCTAAAGGACTTAGCAAA 59.000 40.000 2.23 0.00 36.43 3.68
4084 4227 5.072058 TGGTTACACCTAAAGGACTTAGCAA 59.928 40.000 2.23 0.00 39.58 3.91
4085 4228 4.594062 TGGTTACACCTAAAGGACTTAGCA 59.406 41.667 2.23 0.00 39.58 3.49
4086 4229 5.156608 TGGTTACACCTAAAGGACTTAGC 57.843 43.478 2.23 0.00 39.58 3.09
4087 4230 9.379791 CTAATTGGTTACACCTAAAGGACTTAG 57.620 37.037 2.23 0.00 39.58 2.18
4088 4231 9.103582 TCTAATTGGTTACACCTAAAGGACTTA 57.896 33.333 2.23 0.00 39.58 2.24
4090 4233 7.563724 TCTAATTGGTTACACCTAAAGGACT 57.436 36.000 2.23 0.00 39.58 3.85
4091 4234 7.148289 GCTTCTAATTGGTTACACCTAAAGGAC 60.148 40.741 2.23 0.00 39.58 3.85
4092 4235 6.882678 GCTTCTAATTGGTTACACCTAAAGGA 59.117 38.462 2.23 0.00 39.58 3.36
4093 4236 6.095021 GGCTTCTAATTGGTTACACCTAAAGG 59.905 42.308 0.00 0.00 39.58 3.11
4094 4237 6.183360 CGGCTTCTAATTGGTTACACCTAAAG 60.183 42.308 0.00 0.00 39.58 1.85
4095 4238 5.644636 CGGCTTCTAATTGGTTACACCTAAA 59.355 40.000 0.00 0.00 39.58 1.85
4099 4242 3.602483 TCGGCTTCTAATTGGTTACACC 58.398 45.455 0.00 0.00 39.22 4.16
4100 4243 5.813080 ATTCGGCTTCTAATTGGTTACAC 57.187 39.130 0.00 0.00 0.00 2.90
4102 4245 7.781548 TCTAATTCGGCTTCTAATTGGTTAC 57.218 36.000 0.00 0.00 0.00 2.50
4103 4246 8.974060 AATCTAATTCGGCTTCTAATTGGTTA 57.026 30.769 0.00 0.00 0.00 2.85
4104 4247 7.775561 AGAATCTAATTCGGCTTCTAATTGGTT 59.224 33.333 0.00 0.00 43.92 3.67
4138 4281 9.913310 TGGTTTGTCCATCATAGTAATTGATTA 57.087 29.630 0.00 0.00 41.93 1.75
4139 4282 8.821686 TGGTTTGTCCATCATAGTAATTGATT 57.178 30.769 0.00 0.00 41.93 2.57
4164 4307 1.880675 CGCCGAGTAGTCTCACCATAT 59.119 52.381 0.00 0.00 40.44 1.78
4165 4308 1.306148 CGCCGAGTAGTCTCACCATA 58.694 55.000 0.00 0.00 40.44 2.74
4166 4309 1.384989 CCGCCGAGTAGTCTCACCAT 61.385 60.000 0.00 0.00 40.44 3.55
4167 4310 2.044555 CCGCCGAGTAGTCTCACCA 61.045 63.158 0.00 0.00 40.44 4.17
4168 4311 2.799371 CCGCCGAGTAGTCTCACC 59.201 66.667 0.00 0.00 40.44 4.02
4169 4312 2.102553 GCCGCCGAGTAGTCTCAC 59.897 66.667 0.00 0.00 40.44 3.51
4170 4313 1.320344 ATTGCCGCCGAGTAGTCTCA 61.320 55.000 0.00 0.00 40.44 3.27
4171 4314 0.666913 TATTGCCGCCGAGTAGTCTC 59.333 55.000 0.00 0.00 37.35 3.36
4174 4317 1.602165 CGAATATTGCCGCCGAGTAGT 60.602 52.381 0.00 0.00 0.00 2.73
4176 4319 0.942410 GCGAATATTGCCGCCGAGTA 60.942 55.000 9.71 0.00 45.06 2.59
4177 4320 2.244651 GCGAATATTGCCGCCGAGT 61.245 57.895 9.71 0.00 45.06 4.18
4183 4326 4.382457 CCACATATTTTGCGAATATTGCCG 59.618 41.667 0.00 0.00 0.00 5.69
4184 4327 5.402270 GTCCACATATTTTGCGAATATTGCC 59.598 40.000 0.00 0.00 0.00 4.52
4185 4328 5.976534 TGTCCACATATTTTGCGAATATTGC 59.023 36.000 0.00 0.00 0.00 3.56
4186 4329 7.195646 AGTGTCCACATATTTTGCGAATATTG 58.804 34.615 0.00 5.65 0.00 1.90
4188 4331 6.942532 AGTGTCCACATATTTTGCGAATAT 57.057 33.333 0.00 0.00 0.00 1.28
4189 4332 7.045416 ACTAGTGTCCACATATTTTGCGAATA 58.955 34.615 0.00 0.00 0.00 1.75
4190 4333 5.880332 ACTAGTGTCCACATATTTTGCGAAT 59.120 36.000 0.00 0.00 0.00 3.34
4191 4334 5.242434 ACTAGTGTCCACATATTTTGCGAA 58.758 37.500 0.00 0.00 0.00 4.70
4192 4335 4.827692 ACTAGTGTCCACATATTTTGCGA 58.172 39.130 0.00 0.00 0.00 5.10
4193 4336 6.844696 ATACTAGTGTCCACATATTTTGCG 57.155 37.500 5.39 0.00 0.00 4.85
4199 4342 9.706691 CCGATTAAAATACTAGTGTCCACATAT 57.293 33.333 5.39 0.00 0.00 1.78
4201 4344 6.990349 CCCGATTAAAATACTAGTGTCCACAT 59.010 38.462 5.39 0.00 0.00 3.21
4202 4345 6.154877 TCCCGATTAAAATACTAGTGTCCACA 59.845 38.462 5.39 0.00 0.00 4.17
4203 4346 6.576185 TCCCGATTAAAATACTAGTGTCCAC 58.424 40.000 5.39 0.00 0.00 4.02
4205 4348 6.704937 CCTTCCCGATTAAAATACTAGTGTCC 59.295 42.308 5.39 0.00 0.00 4.02
4206 4349 7.270779 ACCTTCCCGATTAAAATACTAGTGTC 58.729 38.462 5.39 0.00 0.00 3.67
4207 4350 7.191593 ACCTTCCCGATTAAAATACTAGTGT 57.808 36.000 5.39 0.00 0.00 3.55
4209 4352 6.097412 ACGACCTTCCCGATTAAAATACTAGT 59.903 38.462 0.00 0.00 0.00 2.57
4210 4353 6.510536 ACGACCTTCCCGATTAAAATACTAG 58.489 40.000 0.00 0.00 0.00 2.57
4211 4354 6.469782 ACGACCTTCCCGATTAAAATACTA 57.530 37.500 0.00 0.00 0.00 1.82
4212 4355 5.349061 ACGACCTTCCCGATTAAAATACT 57.651 39.130 0.00 0.00 0.00 2.12
4213 4356 6.426980 AAACGACCTTCCCGATTAAAATAC 57.573 37.500 0.00 0.00 0.00 1.89
4214 4357 9.829507 TTATAAACGACCTTCCCGATTAAAATA 57.170 29.630 0.00 0.00 30.40 1.40
4215 4358 8.735692 TTATAAACGACCTTCCCGATTAAAAT 57.264 30.769 0.00 0.00 30.40 1.82
4216 4359 7.201635 GCTTATAAACGACCTTCCCGATTAAAA 60.202 37.037 0.00 0.00 30.40 1.52
4217 4360 6.258507 GCTTATAAACGACCTTCCCGATTAAA 59.741 38.462 0.00 0.00 30.40 1.52
4218 4361 5.754890 GCTTATAAACGACCTTCCCGATTAA 59.245 40.000 0.00 0.00 30.40 1.40
4220 4363 4.124970 GCTTATAAACGACCTTCCCGATT 58.875 43.478 0.00 0.00 0.00 3.34
4221 4364 3.133362 TGCTTATAAACGACCTTCCCGAT 59.867 43.478 0.00 0.00 0.00 4.18
4222 4365 2.496871 TGCTTATAAACGACCTTCCCGA 59.503 45.455 0.00 0.00 0.00 5.14
4223 4366 2.896168 TGCTTATAAACGACCTTCCCG 58.104 47.619 0.00 0.00 0.00 5.14
4224 4367 4.638865 ACAATGCTTATAAACGACCTTCCC 59.361 41.667 0.00 0.00 0.00 3.97
4227 4370 9.826574 TCTATAACAATGCTTATAAACGACCTT 57.173 29.630 0.00 0.00 0.00 3.50
4228 4371 9.998106 ATCTATAACAATGCTTATAAACGACCT 57.002 29.630 0.00 0.00 0.00 3.85
4240 4383 8.985315 TTGATTCCAAGATCTATAACAATGCT 57.015 30.769 0.00 0.00 0.00 3.79
4257 4400 0.035152 ACATGAGCCGCTTGATTCCA 60.035 50.000 0.00 0.00 0.00 3.53
4259 4402 0.248377 GCACATGAGCCGCTTGATTC 60.248 55.000 3.43 0.00 0.00 2.52
4260 4403 0.679002 AGCACATGAGCCGCTTGATT 60.679 50.000 11.77 0.00 29.87 2.57
4261 4404 0.178767 TAGCACATGAGCCGCTTGAT 59.821 50.000 11.77 0.00 37.20 2.57
4264 4407 1.817099 GCTAGCACATGAGCCGCTT 60.817 57.895 10.63 0.00 37.20 4.68
4265 4408 2.202987 GCTAGCACATGAGCCGCT 60.203 61.111 10.63 9.74 39.80 5.52
4266 4409 2.202987 AGCTAGCACATGAGCCGC 60.203 61.111 18.83 14.12 39.65 6.53
4267 4410 0.249784 ATGAGCTAGCACATGAGCCG 60.250 55.000 24.38 4.69 39.65 5.52
4268 4411 1.964552 AATGAGCTAGCACATGAGCC 58.035 50.000 25.44 0.00 39.65 4.70
4269 4412 2.941064 TGAAATGAGCTAGCACATGAGC 59.059 45.455 25.44 17.83 39.08 4.26
4271 4414 6.825213 AGTAATTGAAATGAGCTAGCACATGA 59.175 34.615 25.44 13.69 0.00 3.07
4272 4415 6.910972 CAGTAATTGAAATGAGCTAGCACATG 59.089 38.462 25.44 9.10 0.00 3.21
4273 4416 6.600822 ACAGTAATTGAAATGAGCTAGCACAT 59.399 34.615 20.33 20.33 0.00 3.21
4274 4417 5.939883 ACAGTAATTGAAATGAGCTAGCACA 59.060 36.000 17.37 17.37 0.00 4.57
4294 4437 8.594550 ACCAACTAGATGAAGTGTTATTACAGT 58.405 33.333 0.79 0.00 39.63 3.55
4295 4438 9.436957 AACCAACTAGATGAAGTGTTATTACAG 57.563 33.333 0.79 0.00 34.24 2.74
4298 4441 8.598916 TCCAACCAACTAGATGAAGTGTTATTA 58.401 33.333 0.79 0.00 0.00 0.98
4299 4442 7.390718 GTCCAACCAACTAGATGAAGTGTTATT 59.609 37.037 0.79 0.00 0.00 1.40
4300 4443 6.879458 GTCCAACCAACTAGATGAAGTGTTAT 59.121 38.462 0.79 0.00 0.00 1.89
4301 4444 6.228258 GTCCAACCAACTAGATGAAGTGTTA 58.772 40.000 0.79 0.00 0.00 2.41
4302 4445 5.063880 GTCCAACCAACTAGATGAAGTGTT 58.936 41.667 0.79 0.00 0.00 3.32
4303 4446 4.642429 GTCCAACCAACTAGATGAAGTGT 58.358 43.478 0.79 0.00 0.00 3.55
4304 4447 3.679980 CGTCCAACCAACTAGATGAAGTG 59.320 47.826 0.79 0.00 0.00 3.16
4305 4448 3.576982 TCGTCCAACCAACTAGATGAAGT 59.423 43.478 0.79 0.00 0.00 3.01
4306 4449 4.177026 CTCGTCCAACCAACTAGATGAAG 58.823 47.826 0.79 0.00 0.00 3.02
4308 4451 2.094182 GCTCGTCCAACCAACTAGATGA 60.094 50.000 0.79 0.00 0.00 2.92
4309 4452 2.271800 GCTCGTCCAACCAACTAGATG 58.728 52.381 0.00 0.00 0.00 2.90
4310 4453 1.207329 GGCTCGTCCAACCAACTAGAT 59.793 52.381 0.00 0.00 34.01 1.98
4312 4455 0.608640 AGGCTCGTCCAACCAACTAG 59.391 55.000 0.00 0.00 37.29 2.57
4313 4456 1.001633 GAAGGCTCGTCCAACCAACTA 59.998 52.381 0.00 0.00 37.29 2.24
4314 4457 0.250338 GAAGGCTCGTCCAACCAACT 60.250 55.000 0.00 0.00 37.29 3.16
4315 4458 0.250338 AGAAGGCTCGTCCAACCAAC 60.250 55.000 0.00 0.00 37.29 3.77
4316 4459 1.344065 TAGAAGGCTCGTCCAACCAA 58.656 50.000 0.00 0.00 37.29 3.67
4317 4460 1.001633 GTTAGAAGGCTCGTCCAACCA 59.998 52.381 0.00 0.00 37.29 3.67
4318 4461 1.275573 AGTTAGAAGGCTCGTCCAACC 59.724 52.381 0.00 0.00 37.29 3.77
4319 4462 2.745515 AGTTAGAAGGCTCGTCCAAC 57.254 50.000 0.00 0.00 37.29 3.77
4320 4463 3.764237 AAAGTTAGAAGGCTCGTCCAA 57.236 42.857 0.00 0.00 37.29 3.53
4322 4465 5.176592 ACAATAAAGTTAGAAGGCTCGTCC 58.823 41.667 0.00 0.00 0.00 4.79
4325 4468 5.869888 ACTGACAATAAAGTTAGAAGGCTCG 59.130 40.000 0.00 0.00 0.00 5.03
4326 4469 8.773404 TTACTGACAATAAAGTTAGAAGGCTC 57.227 34.615 0.00 0.00 0.00 4.70
4327 4470 9.000486 GTTTACTGACAATAAAGTTAGAAGGCT 58.000 33.333 0.00 0.00 0.00 4.58
4328 4471 9.000486 AGTTTACTGACAATAAAGTTAGAAGGC 58.000 33.333 0.00 0.00 0.00 4.35
4335 4478 9.189723 GTCTACGAGTTTACTGACAATAAAGTT 57.810 33.333 0.00 0.00 0.00 2.66
4336 4479 7.536622 CGTCTACGAGTTTACTGACAATAAAGT 59.463 37.037 0.00 0.00 43.02 2.66
4337 4480 7.747799 TCGTCTACGAGTTTACTGACAATAAAG 59.252 37.037 0.14 0.00 44.22 1.85
4340 4483 6.726258 TCGTCTACGAGTTTACTGACAATA 57.274 37.500 0.14 0.00 44.22 1.90
4341 4484 5.618056 TCGTCTACGAGTTTACTGACAAT 57.382 39.130 0.14 0.00 44.22 2.71
4355 4498 3.395858 AGGTCGTTTACATCGTCTACG 57.604 47.619 0.00 0.00 41.45 3.51
4357 4500 4.012374 AGGAAGGTCGTTTACATCGTCTA 58.988 43.478 0.00 0.00 0.00 2.59
4358 4501 2.824341 AGGAAGGTCGTTTACATCGTCT 59.176 45.455 0.00 0.00 0.00 4.18
4360 4503 2.559668 TCAGGAAGGTCGTTTACATCGT 59.440 45.455 0.00 0.00 0.00 3.73
4361 4504 3.226346 TCAGGAAGGTCGTTTACATCG 57.774 47.619 0.00 0.00 0.00 3.84
4362 4505 5.642063 TGAAATCAGGAAGGTCGTTTACATC 59.358 40.000 0.00 0.00 0.00 3.06
4363 4506 5.556915 TGAAATCAGGAAGGTCGTTTACAT 58.443 37.500 0.00 0.00 0.00 2.29
4365 4508 5.411669 ACATGAAATCAGGAAGGTCGTTTAC 59.588 40.000 0.00 0.00 0.00 2.01
4366 4509 5.411361 CACATGAAATCAGGAAGGTCGTTTA 59.589 40.000 0.00 0.00 0.00 2.01
4367 4510 4.216257 CACATGAAATCAGGAAGGTCGTTT 59.784 41.667 0.00 0.00 0.00 3.60
4368 4511 3.753272 CACATGAAATCAGGAAGGTCGTT 59.247 43.478 0.00 0.00 0.00 3.85
4369 4512 3.338249 CACATGAAATCAGGAAGGTCGT 58.662 45.455 0.00 0.00 0.00 4.34
4370 4513 2.679837 CCACATGAAATCAGGAAGGTCG 59.320 50.000 0.00 0.00 0.00 4.79
4371 4514 3.955471 TCCACATGAAATCAGGAAGGTC 58.045 45.455 0.00 0.00 31.92 3.85
4372 4515 4.598036 ATCCACATGAAATCAGGAAGGT 57.402 40.909 0.00 0.00 30.97 3.50
4373 4516 5.163478 GGAAATCCACATGAAATCAGGAAGG 60.163 44.000 0.00 3.92 30.97 3.46
4375 4518 5.582953 AGGAAATCCACATGAAATCAGGAA 58.417 37.500 0.00 0.00 38.89 3.36
4376 4519 5.044624 AGAGGAAATCCACATGAAATCAGGA 60.045 40.000 0.00 0.00 38.89 3.86
4377 4520 5.198965 AGAGGAAATCCACATGAAATCAGG 58.801 41.667 0.00 0.00 38.89 3.86
4378 4521 6.152323 ACAAGAGGAAATCCACATGAAATCAG 59.848 38.462 0.00 0.00 38.89 2.90
4380 4523 6.521151 ACAAGAGGAAATCCACATGAAATC 57.479 37.500 0.00 0.00 38.89 2.17
4381 4524 6.295462 CCAACAAGAGGAAATCCACATGAAAT 60.295 38.462 0.00 0.00 38.89 2.17
4382 4525 5.010922 CCAACAAGAGGAAATCCACATGAAA 59.989 40.000 0.00 0.00 38.89 2.69
4384 4527 4.081406 CCAACAAGAGGAAATCCACATGA 58.919 43.478 0.00 0.00 38.89 3.07
4385 4528 3.194116 CCCAACAAGAGGAAATCCACATG 59.806 47.826 1.67 1.51 38.89 3.21
4386 4529 3.075882 TCCCAACAAGAGGAAATCCACAT 59.924 43.478 1.67 0.00 38.89 3.21
4388 4531 3.154827 TCCCAACAAGAGGAAATCCAC 57.845 47.619 1.67 0.00 38.89 4.02
4389 4532 3.593328 AGATCCCAACAAGAGGAAATCCA 59.407 43.478 1.67 0.00 38.89 3.41
4390 4533 3.950395 CAGATCCCAACAAGAGGAAATCC 59.050 47.826 0.00 0.00 35.30 3.01
4391 4534 4.848357 TCAGATCCCAACAAGAGGAAATC 58.152 43.478 0.00 0.00 35.30 2.17
4392 4535 4.934797 TCAGATCCCAACAAGAGGAAAT 57.065 40.909 0.00 0.00 35.30 2.17
4393 4536 4.507335 CCTTCAGATCCCAACAAGAGGAAA 60.507 45.833 0.00 0.00 35.30 3.13
4395 4538 2.573462 CCTTCAGATCCCAACAAGAGGA 59.427 50.000 0.00 0.00 36.36 3.71
4396 4539 2.943199 GCCTTCAGATCCCAACAAGAGG 60.943 54.545 0.00 0.00 0.00 3.69
4398 4541 1.004745 GGCCTTCAGATCCCAACAAGA 59.995 52.381 0.00 0.00 0.00 3.02
4399 4542 1.005215 AGGCCTTCAGATCCCAACAAG 59.995 52.381 0.00 0.00 0.00 3.16
4401 4544 1.075601 AAGGCCTTCAGATCCCAACA 58.924 50.000 13.78 0.00 0.00 3.33
4403 4546 1.371467 TCAAGGCCTTCAGATCCCAA 58.629 50.000 17.29 0.00 0.00 4.12
4405 4548 1.202867 GGATCAAGGCCTTCAGATCCC 60.203 57.143 34.83 24.06 46.90 3.85
4406 4549 2.268762 GGATCAAGGCCTTCAGATCC 57.731 55.000 33.14 33.14 46.74 3.36
4407 4550 1.202867 GGGGATCAAGGCCTTCAGATC 60.203 57.143 26.78 26.78 36.91 2.75
4408 4551 0.849417 GGGGATCAAGGCCTTCAGAT 59.151 55.000 17.29 16.64 0.00 2.90
4409 4552 0.253347 AGGGGATCAAGGCCTTCAGA 60.253 55.000 17.29 11.91 0.00 3.27
4411 4554 1.979809 TTAGGGGATCAAGGCCTTCA 58.020 50.000 17.29 1.70 0.00 3.02
4412 4555 2.443255 TCATTAGGGGATCAAGGCCTTC 59.557 50.000 17.29 4.35 0.00 3.46
4414 4557 2.212752 TCATTAGGGGATCAAGGCCT 57.787 50.000 0.00 0.00 0.00 5.19
4415 4558 3.532641 ATTCATTAGGGGATCAAGGCC 57.467 47.619 0.00 0.00 0.00 5.19
4417 4560 5.211201 ACCAAATTCATTAGGGGATCAAGG 58.789 41.667 0.00 0.00 0.00 3.61
4418 4561 6.796785 AACCAAATTCATTAGGGGATCAAG 57.203 37.500 0.00 0.00 0.00 3.02
4419 4562 7.236432 TCAAAACCAAATTCATTAGGGGATCAA 59.764 33.333 0.00 0.00 0.00 2.57
4420 4563 6.728164 TCAAAACCAAATTCATTAGGGGATCA 59.272 34.615 0.00 0.00 0.00 2.92
4421 4564 7.181569 TCAAAACCAAATTCATTAGGGGATC 57.818 36.000 0.00 0.00 0.00 3.36
4422 4565 7.566658 TTCAAAACCAAATTCATTAGGGGAT 57.433 32.000 0.00 0.00 0.00 3.85
4423 4566 7.380423 TTTCAAAACCAAATTCATTAGGGGA 57.620 32.000 0.00 0.00 0.00 4.81
4424 4567 7.882271 TGATTTCAAAACCAAATTCATTAGGGG 59.118 33.333 0.00 0.00 0.00 4.79
4425 4568 8.845413 TGATTTCAAAACCAAATTCATTAGGG 57.155 30.769 0.00 0.00 0.00 3.53
4429 4572 8.505625 CCGAATGATTTCAAAACCAAATTCATT 58.494 29.630 0.00 0.00 31.23 2.57
4431 4574 6.426328 CCCGAATGATTTCAAAACCAAATTCA 59.574 34.615 0.00 0.00 0.00 2.57
4433 4576 5.704978 CCCCGAATGATTTCAAAACCAAATT 59.295 36.000 0.00 0.00 0.00 1.82
4434 4577 5.221823 ACCCCGAATGATTTCAAAACCAAAT 60.222 36.000 0.00 0.00 0.00 2.32
4470 4694 8.793592 AGAAAATCCACACTAAATAGGTTGTTC 58.206 33.333 0.00 0.00 0.00 3.18
4476 4700 8.110860 ACAACAGAAAATCCACACTAAATAGG 57.889 34.615 0.00 0.00 0.00 2.57
4479 4703 7.209475 CCAACAACAGAAAATCCACACTAAAT 58.791 34.615 0.00 0.00 0.00 1.40
4494 4718 2.553028 GCCTTCAGATCCCAACAACAGA 60.553 50.000 0.00 0.00 0.00 3.41
4510 4734 1.004745 TGGGAACAGATCAAGGCCTTC 59.995 52.381 17.29 4.60 35.01 3.46
4525 4749 6.889722 CCAATAAAAGAATGGTAGTCTGGGAA 59.110 38.462 0.00 0.00 0.00 3.97
4528 4752 7.611855 AGAACCAATAAAAGAATGGTAGTCTGG 59.388 37.037 0.00 0.00 46.46 3.86
4538 4762 7.179160 CCTCCTCCAAAGAACCAATAAAAGAAT 59.821 37.037 0.00 0.00 0.00 2.40
4545 4769 3.265489 ACCCTCCTCCAAAGAACCAATA 58.735 45.455 0.00 0.00 0.00 1.90
4579 4803 1.271379 ACAGTGATTTCTGGAACGGGG 60.271 52.381 0.00 0.00 39.48 5.73
4584 4808 6.240894 AGCATAAGAACAGTGATTTCTGGAA 58.759 36.000 0.00 0.00 39.48 3.53
4597 4821 2.472695 ACCGCAGAAGCATAAGAACA 57.527 45.000 0.00 0.00 42.27 3.18
4598 4822 2.742053 TGAACCGCAGAAGCATAAGAAC 59.258 45.455 0.00 0.00 42.27 3.01
4599 4823 3.052455 TGAACCGCAGAAGCATAAGAA 57.948 42.857 0.00 0.00 42.27 2.52
4613 4837 0.165944 GAAACGTGGCTCATGAACCG 59.834 55.000 10.52 6.12 0.00 4.44
4619 4843 3.679389 AGATCAAAGAAACGTGGCTCAT 58.321 40.909 0.00 0.00 0.00 2.90
4626 4850 3.463944 ACGACCAAGATCAAAGAAACGT 58.536 40.909 0.00 0.00 0.00 3.99
4640 4864 1.420430 ACCTCCTGAAGAACGACCAA 58.580 50.000 0.00 0.00 0.00 3.67
4641 4865 2.297698 TACCTCCTGAAGAACGACCA 57.702 50.000 0.00 0.00 0.00 4.02
4675 4899 6.612247 ATCAATACGTTTGAACACAGAACA 57.388 33.333 14.24 0.00 31.55 3.18
4687 4911 7.387673 TGACTGATGAACTGAATCAATACGTTT 59.612 33.333 0.00 0.00 33.76 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.