Multiple sequence alignment - TraesCS4A01G070900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G070900 chr4A 100.000 6179 0 0 1 6179 68157905 68151727 0.000000e+00 11411.0
1 TraesCS4A01G070900 chr4A 82.407 216 27 5 3074 3279 176616469 176616683 1.770000e-40 178.0
2 TraesCS4A01G070900 chr4A 92.174 115 9 0 621 735 381221433 381221319 4.960000e-36 163.0
3 TraesCS4A01G070900 chr4D 89.928 2224 138 38 904 3116 386841919 386839771 0.000000e+00 2787.0
4 TraesCS4A01G070900 chr4D 95.034 1027 32 6 3174 4198 386839771 386838762 0.000000e+00 1596.0
5 TraesCS4A01G070900 chr4D 96.207 949 32 3 4689 5634 386837823 386836876 0.000000e+00 1550.0
6 TraesCS4A01G070900 chr4D 94.915 531 21 6 5650 6179 386836831 386836306 0.000000e+00 826.0
7 TraesCS4A01G070900 chr4D 87.937 630 63 8 1 618 386843383 386842755 0.000000e+00 730.0
8 TraesCS4A01G070900 chr4D 97.156 211 6 0 4236 4446 386838758 386838548 2.120000e-94 357.0
9 TraesCS4A01G070900 chr4D 96.850 127 4 0 4526 4652 386838147 386838021 4.850000e-51 213.0
10 TraesCS4A01G070900 chr4B 95.137 1172 47 8 4478 5645 474385336 474384171 0.000000e+00 1840.0
11 TraesCS4A01G070900 chr4B 92.833 1172 56 16 2256 3418 474387576 474386424 0.000000e+00 1674.0
12 TraesCS4A01G070900 chr4B 96.275 1020 32 3 3435 4454 474386339 474385326 0.000000e+00 1668.0
13 TraesCS4A01G070900 chr4B 92.857 602 30 6 904 1498 474389097 474388502 0.000000e+00 861.0
14 TraesCS4A01G070900 chr4B 88.957 652 53 10 1528 2179 474388502 474387870 0.000000e+00 787.0
15 TraesCS4A01G070900 chr4B 93.045 532 24 5 5650 6179 474384133 474383613 0.000000e+00 765.0
16 TraesCS4A01G070900 chr4B 100.000 36 0 0 2892 2927 474387012 474386977 4.000000e-07 67.6
17 TraesCS4A01G070900 chr7A 95.579 769 26 4 3430 4198 130440610 130441370 0.000000e+00 1225.0
18 TraesCS4A01G070900 chr7A 95.349 172 8 0 4240 4411 130441378 130441549 2.190000e-69 274.0
19 TraesCS4A01G070900 chr7A 92.982 114 7 1 621 734 678972839 678972951 1.380000e-36 165.0
20 TraesCS4A01G070900 chr7A 92.982 114 7 1 621 734 678987048 678987160 1.380000e-36 165.0
21 TraesCS4A01G070900 chr2A 88.698 929 77 12 1888 2812 685972313 685973217 0.000000e+00 1109.0
22 TraesCS4A01G070900 chr2A 97.842 139 3 0 4273 4411 685974083 685974221 2.230000e-59 241.0
23 TraesCS4A01G070900 chr1D 82.560 992 126 27 2308 3279 22040435 22039471 0.000000e+00 830.0
24 TraesCS4A01G070900 chr1D 91.597 119 9 1 614 731 247521072 247520954 4.960000e-36 163.0
25 TraesCS4A01G070900 chr6A 94.460 361 12 3 3838 4198 26755390 26755038 3.260000e-152 549.0
26 TraesCS4A01G070900 chr6A 95.588 340 15 0 3430 3769 26755729 26755390 4.210000e-151 545.0
27 TraesCS4A01G070900 chr6A 95.455 176 8 0 4236 4411 26755034 26754859 1.310000e-71 281.0
28 TraesCS4A01G070900 chr2D 80.793 479 62 21 2573 3044 534329463 534329918 1.270000e-91 348.0
29 TraesCS4A01G070900 chr2D 82.407 216 26 6 3074 3279 43249581 43249794 1.770000e-40 178.0
30 TraesCS4A01G070900 chr2D 92.437 119 9 0 613 731 272263178 272263060 2.960000e-38 171.0
31 TraesCS4A01G070900 chr7D 83.256 215 25 5 3075 3279 403151102 403151315 2.940000e-43 187.0
32 TraesCS4A01G070900 chr7D 89.051 137 14 1 765 901 213127615 213127480 1.070000e-37 169.0
33 TraesCS4A01G070900 chr3A 81.944 216 27 6 3074 3279 125399665 125399452 8.230000e-39 172.0
34 TraesCS4A01G070900 chr5A 91.525 118 10 0 614 731 663713641 663713758 4.960000e-36 163.0
35 TraesCS4A01G070900 chr5A 90.323 124 10 2 610 731 528581267 528581390 1.780000e-35 161.0
36 TraesCS4A01G070900 chr1A 90.323 124 11 1 621 744 376756341 376756219 1.780000e-35 161.0
37 TraesCS4A01G070900 chr3D 89.600 125 12 1 603 727 572130986 572131109 2.310000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G070900 chr4A 68151727 68157905 6178 True 11411.000000 11411 100.000000 1 6179 1 chr4A.!!$R1 6178
1 TraesCS4A01G070900 chr4D 386836306 386843383 7077 True 1151.285714 2787 94.003857 1 6179 7 chr4D.!!$R1 6178
2 TraesCS4A01G070900 chr4B 474383613 474389097 5484 True 1094.657143 1840 94.157714 904 6179 7 chr4B.!!$R1 5275
3 TraesCS4A01G070900 chr7A 130440610 130441549 939 False 749.500000 1225 95.464000 3430 4411 2 chr7A.!!$F3 981
4 TraesCS4A01G070900 chr2A 685972313 685974221 1908 False 675.000000 1109 93.270000 1888 4411 2 chr2A.!!$F1 2523
5 TraesCS4A01G070900 chr1D 22039471 22040435 964 True 830.000000 830 82.560000 2308 3279 1 chr1D.!!$R1 971
6 TraesCS4A01G070900 chr6A 26754859 26755729 870 True 458.333333 549 95.167667 3430 4411 3 chr6A.!!$R1 981

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 1413 0.320374 TGTAACTCCACCTGCTTCCG 59.680 55.0 0.00 0.0 0.00 4.30 F
1300 1863 0.107848 CGTTTAGCTCCCGGTTCCAT 60.108 55.0 0.00 0.0 0.00 3.41 F
2377 3171 0.592637 TTCAAGGAAGACGTCGCGTA 59.407 50.0 10.46 0.0 41.37 4.42 F
3319 4151 1.360185 TAGGTTCCGGCCAGGTAAAA 58.640 50.0 2.24 0.0 41.99 1.52 F
4392 5803 0.622136 TGCACTGGGATCAAGAGCAT 59.378 50.0 13.31 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 2311 0.111253 AGCTGGGTTTCAAGTCCTGG 59.889 55.0 0.00 0.0 0.00 4.45 R
2389 3183 0.529773 GGCACTGTGTGACACTCGAA 60.530 55.0 17.47 0.0 41.94 3.71 R
3519 4429 0.106918 ACGGCCAACAACCTTCAAGA 60.107 50.0 2.24 0.0 0.00 3.02 R
4911 6808 0.400213 ATTTGACTGTCCGGGCAAGA 59.600 50.0 11.40 0.0 0.00 3.02 R
5766 7696 0.110644 CGACGCAAAGCCAGAGAAAC 60.111 55.0 0.00 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.289782 ACATCTAAAGAAATAATACATGAGGGC 57.710 33.333 0.00 0.00 0.00 5.19
33 34 9.866655 ATCTAAAGAAATAATACATGAGGGCAA 57.133 29.630 0.00 0.00 0.00 4.52
102 103 2.818921 TGCATTGGAAGTGCCCTTAAT 58.181 42.857 0.00 0.00 41.83 1.40
124 125 4.632538 AGTTTAGCAAACAGTGTTGACC 57.367 40.909 9.79 1.08 43.79 4.02
139 140 7.389053 ACAGTGTTGACCTCTAATTCAGATTTC 59.611 37.037 0.00 0.00 31.13 2.17
159 160 7.609146 AGATTTCAGATTCTCTTTGTGCACATA 59.391 33.333 22.39 15.50 0.00 2.29
209 210 9.703892 AATGAGAATATTTTAGAGACTGGATCG 57.296 33.333 0.00 0.00 0.00 3.69
213 214 7.863375 AGAATATTTTAGAGACTGGATCGAACG 59.137 37.037 0.00 0.00 0.00 3.95
221 222 2.621998 GACTGGATCGAACGAGGGATAA 59.378 50.000 9.40 0.00 0.00 1.75
239 240 8.190326 AGGGATAATCGTACACATTCTATTGA 57.810 34.615 0.00 0.00 0.00 2.57
254 255 5.529581 TCTATTGATGTGCTTATCACCGA 57.470 39.130 3.42 0.00 45.03 4.69
255 256 6.101650 TCTATTGATGTGCTTATCACCGAT 57.898 37.500 3.42 0.00 45.03 4.18
257 258 3.817709 TGATGTGCTTATCACCGATGA 57.182 42.857 0.00 0.00 45.03 2.92
261 262 2.499693 TGTGCTTATCACCGATGAAGGA 59.500 45.455 0.00 0.00 45.03 3.36
267 268 5.739070 GCTTATCACCGATGAAGGATGTGTA 60.739 44.000 0.00 0.00 38.69 2.90
273 274 3.549019 CCGATGAAGGATGTGTAGAGTCG 60.549 52.174 0.00 0.00 0.00 4.18
315 316 3.788937 TCGATTTAGGTTTCGGATGGAC 58.211 45.455 0.00 0.00 36.08 4.02
337 338 1.954927 CCTAGATTTGGCCGGTCTTC 58.045 55.000 7.97 1.41 0.00 2.87
362 363 3.751698 AGTTTTTACAGGCCTTCATCGAC 59.248 43.478 0.00 0.00 0.00 4.20
373 374 4.287720 GCCTTCATCGACGTTTTCTTTTT 58.712 39.130 0.00 0.00 0.00 1.94
396 397 1.392510 GGACGGCGATTTACTTCACAC 59.607 52.381 16.62 0.00 0.00 3.82
402 403 3.989705 CGATTTACTTCACACATCGCA 57.010 42.857 0.00 0.00 31.19 5.10
426 427 3.075005 GGCGTCCCCTAGTCTGCA 61.075 66.667 0.00 0.00 0.00 4.41
432 433 1.101635 TCCCCTAGTCTGCATCGACG 61.102 60.000 0.00 0.00 38.90 5.12
436 437 1.268285 CCTAGTCTGCATCGACGACTG 60.268 57.143 14.07 1.21 38.39 3.51
450 451 3.253416 GACTGTCGGGTCGCTATTC 57.747 57.895 0.00 0.00 0.00 1.75
451 452 0.739561 GACTGTCGGGTCGCTATTCT 59.260 55.000 0.00 0.00 0.00 2.40
452 453 1.945394 GACTGTCGGGTCGCTATTCTA 59.055 52.381 0.00 0.00 0.00 2.10
453 454 2.553172 GACTGTCGGGTCGCTATTCTAT 59.447 50.000 0.00 0.00 0.00 1.98
454 455 3.748083 ACTGTCGGGTCGCTATTCTATA 58.252 45.455 0.00 0.00 0.00 1.31
456 457 4.215827 ACTGTCGGGTCGCTATTCTATAAG 59.784 45.833 0.00 0.00 0.00 1.73
457 458 4.139786 TGTCGGGTCGCTATTCTATAAGT 58.860 43.478 0.00 0.00 0.00 2.24
458 459 4.581824 TGTCGGGTCGCTATTCTATAAGTT 59.418 41.667 0.00 0.00 0.00 2.66
459 460 5.152804 GTCGGGTCGCTATTCTATAAGTTC 58.847 45.833 0.00 0.00 0.00 3.01
460 461 5.048852 GTCGGGTCGCTATTCTATAAGTTCT 60.049 44.000 0.00 0.00 0.00 3.01
462 463 6.712095 TCGGGTCGCTATTCTATAAGTTCTTA 59.288 38.462 0.00 0.00 0.00 2.10
463 464 7.022384 CGGGTCGCTATTCTATAAGTTCTTAG 58.978 42.308 0.00 0.00 0.00 2.18
464 465 7.314393 GGGTCGCTATTCTATAAGTTCTTAGG 58.686 42.308 0.00 0.00 0.00 2.69
484 495 8.161425 TCTTAGGTTATAAAAAGGTTGCTCTGT 58.839 33.333 0.00 0.00 0.00 3.41
486 497 6.543735 AGGTTATAAAAAGGTTGCTCTGTCT 58.456 36.000 0.00 0.00 0.00 3.41
490 501 4.439253 AAAAAGGTTGCTCTGTCTAGGT 57.561 40.909 0.00 0.00 0.00 3.08
492 503 2.310779 AGGTTGCTCTGTCTAGGTGA 57.689 50.000 0.00 0.00 0.00 4.02
514 525 7.254761 GGTGACATCGAAATATGTTCATAGCAA 60.255 37.037 0.00 0.00 40.17 3.91
519 530 6.521162 TCGAAATATGTTCATAGCAAGGCTA 58.479 36.000 0.00 0.00 45.55 3.93
535 547 5.449725 GCAAGGCTATGAATGAAAGAGGAAC 60.450 44.000 0.00 0.00 0.00 3.62
538 550 6.248433 AGGCTATGAATGAAAGAGGAACAAA 58.752 36.000 0.00 0.00 0.00 2.83
566 578 9.757227 CTTCAACACAACCAAGGATTTAAATAA 57.243 29.630 0.00 0.00 0.00 1.40
643 1136 7.845066 ATACTCCTTCCGTTTCAAATTACTC 57.155 36.000 0.00 0.00 0.00 2.59
647 1140 4.433805 CCTTCCGTTTCAAATTACTCGTCG 60.434 45.833 0.00 0.00 0.00 5.12
648 1141 2.409378 TCCGTTTCAAATTACTCGTCGC 59.591 45.455 0.00 0.00 0.00 5.19
649 1142 2.156117 CCGTTTCAAATTACTCGTCGCA 59.844 45.455 0.00 0.00 0.00 5.10
650 1143 3.395671 CGTTTCAAATTACTCGTCGCAG 58.604 45.455 0.00 0.00 0.00 5.18
651 1144 3.120616 CGTTTCAAATTACTCGTCGCAGA 59.879 43.478 0.00 0.00 0.00 4.26
653 1146 5.437263 GTTTCAAATTACTCGTCGCAGAAA 58.563 37.500 0.00 0.00 39.69 2.52
654 1147 5.856126 TTCAAATTACTCGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
656 1149 4.092821 TCAAATTACTCGTCGCAGAAATGG 59.907 41.667 0.00 0.00 39.69 3.16
657 1150 3.520290 ATTACTCGTCGCAGAAATGGA 57.480 42.857 0.00 0.00 39.69 3.41
662 1155 0.659427 CGTCGCAGAAATGGATGCAT 59.341 50.000 0.00 0.00 42.68 3.96
664 1157 1.945394 GTCGCAGAAATGGATGCATCT 59.055 47.619 25.28 6.25 42.68 2.90
666 1159 3.186001 GTCGCAGAAATGGATGCATCTAG 59.814 47.826 25.28 9.06 42.68 2.43
667 1160 3.070015 TCGCAGAAATGGATGCATCTAGA 59.930 43.478 25.28 9.00 42.68 2.43
668 1161 3.811497 CGCAGAAATGGATGCATCTAGAA 59.189 43.478 25.28 10.04 42.68 2.10
674 1201 8.896744 CAGAAATGGATGCATCTAGAACTAAAA 58.103 33.333 25.28 0.70 0.00 1.52
678 1205 9.851686 AATGGATGCATCTAGAACTAAAATACA 57.148 29.630 25.28 10.32 0.00 2.29
705 1255 9.000486 TCTAGATACATTCATACCTACGACAAG 58.000 37.037 0.00 0.00 0.00 3.16
708 1258 9.128404 AGATACATTCATACCTACGACAAGTAA 57.872 33.333 0.00 0.00 34.45 2.24
711 1261 8.644318 ACATTCATACCTACGACAAGTAATTC 57.356 34.615 0.00 0.00 34.45 2.17
717 1267 4.618489 ACCTACGACAAGTAATTCGAAACG 59.382 41.667 0.00 1.44 38.63 3.60
718 1268 4.853196 CCTACGACAAGTAATTCGAAACGA 59.147 41.667 0.00 0.00 38.63 3.85
733 1283 7.486802 TTCGAAACGAAGGAAGTAAAATCTT 57.513 32.000 0.00 0.00 41.05 2.40
738 1288 6.738832 ACGAAGGAAGTAAAATCTTAAGCC 57.261 37.500 0.00 0.00 0.00 4.35
742 1292 8.297426 CGAAGGAAGTAAAATCTTAAGCCTTTT 58.703 33.333 15.45 15.45 32.81 2.27
743 1293 9.411801 GAAGGAAGTAAAATCTTAAGCCTTTTG 57.588 33.333 18.35 0.00 32.81 2.44
744 1294 7.896811 AGGAAGTAAAATCTTAAGCCTTTTGG 58.103 34.615 18.35 0.00 44.18 3.28
745 1295 7.039011 AGGAAGTAAAATCTTAAGCCTTTTGGG 60.039 37.037 18.35 0.00 40.82 4.12
746 1296 7.039293 GGAAGTAAAATCTTAAGCCTTTTGGGA 60.039 37.037 18.35 4.18 40.82 4.37
747 1297 7.849322 AGTAAAATCTTAAGCCTTTTGGGAA 57.151 32.000 18.35 3.93 40.82 3.97
748 1298 8.257602 AGTAAAATCTTAAGCCTTTTGGGAAA 57.742 30.769 18.35 3.68 40.82 3.13
750 1300 9.332502 GTAAAATCTTAAGCCTTTTGGGAAAAA 57.667 29.630 18.35 2.70 40.82 1.94
769 1319 5.440207 AAAAATTGCAATATTCAGGCCCT 57.560 34.783 13.39 0.00 0.00 5.19
770 1320 4.411256 AAATTGCAATATTCAGGCCCTG 57.589 40.909 13.39 3.69 0.00 4.45
771 1321 2.530460 TTGCAATATTCAGGCCCTGT 57.470 45.000 11.27 0.00 32.61 4.00
773 1323 2.818921 TGCAATATTCAGGCCCTGTTT 58.181 42.857 11.27 1.97 32.61 2.83
774 1324 3.974719 TGCAATATTCAGGCCCTGTTTA 58.025 40.909 11.27 4.32 32.61 2.01
775 1325 3.953612 TGCAATATTCAGGCCCTGTTTAG 59.046 43.478 11.27 0.00 32.61 1.85
776 1326 4.207165 GCAATATTCAGGCCCTGTTTAGA 58.793 43.478 11.27 0.00 32.61 2.10
777 1327 4.644685 GCAATATTCAGGCCCTGTTTAGAA 59.355 41.667 11.27 0.00 32.61 2.10
779 1329 6.515696 GCAATATTCAGGCCCTGTTTAGAATC 60.516 42.308 11.27 0.00 32.61 2.52
780 1330 3.366052 TTCAGGCCCTGTTTAGAATCC 57.634 47.619 11.27 0.00 32.61 3.01
781 1331 1.564348 TCAGGCCCTGTTTAGAATCCC 59.436 52.381 11.27 0.00 32.61 3.85
782 1332 1.284785 CAGGCCCTGTTTAGAATCCCA 59.715 52.381 1.39 0.00 0.00 4.37
783 1333 1.285078 AGGCCCTGTTTAGAATCCCAC 59.715 52.381 0.00 0.00 0.00 4.61
784 1334 1.685180 GGCCCTGTTTAGAATCCCACC 60.685 57.143 0.00 0.00 0.00 4.61
785 1335 1.285078 GCCCTGTTTAGAATCCCACCT 59.715 52.381 0.00 0.00 0.00 4.00
786 1336 2.945890 GCCCTGTTTAGAATCCCACCTG 60.946 54.545 0.00 0.00 0.00 4.00
787 1337 2.369394 CCTGTTTAGAATCCCACCTGC 58.631 52.381 0.00 0.00 0.00 4.85
792 1342 2.196742 TAGAATCCCACCTGCTCCAT 57.803 50.000 0.00 0.00 0.00 3.41
793 1343 0.549950 AGAATCCCACCTGCTCCATG 59.450 55.000 0.00 0.00 0.00 3.66
794 1344 0.548031 GAATCCCACCTGCTCCATGA 59.452 55.000 0.00 0.00 0.00 3.07
795 1345 1.002069 AATCCCACCTGCTCCATGAA 58.998 50.000 0.00 0.00 0.00 2.57
796 1346 1.002069 ATCCCACCTGCTCCATGAAA 58.998 50.000 0.00 0.00 0.00 2.69
797 1347 1.002069 TCCCACCTGCTCCATGAAAT 58.998 50.000 0.00 0.00 0.00 2.17
799 1349 2.785269 TCCCACCTGCTCCATGAAATAT 59.215 45.455 0.00 0.00 0.00 1.28
801 1351 3.435457 CCCACCTGCTCCATGAAATATGA 60.435 47.826 0.00 0.00 0.00 2.15
802 1352 3.819337 CCACCTGCTCCATGAAATATGAG 59.181 47.826 0.00 0.00 0.00 2.90
804 1354 3.718434 ACCTGCTCCATGAAATATGAGGA 59.282 43.478 0.00 0.00 0.00 3.71
805 1355 4.202440 ACCTGCTCCATGAAATATGAGGAG 60.202 45.833 8.35 8.35 46.71 3.69
811 1361 6.058553 TCCATGAAATATGAGGAGCTATGG 57.941 41.667 0.00 0.00 35.14 2.74
813 1363 6.070366 TCCATGAAATATGAGGAGCTATGGAG 60.070 42.308 0.00 0.00 37.29 3.86
824 1374 1.009829 GCTATGGAGCCACGAAACAG 58.990 55.000 0.00 0.00 43.49 3.16
825 1375 1.656652 CTATGGAGCCACGAAACAGG 58.343 55.000 0.00 0.00 0.00 4.00
830 1380 4.090057 GCCACGAAACAGGCGCTC 62.090 66.667 7.64 0.00 41.70 5.03
831 1381 3.423154 CCACGAAACAGGCGCTCC 61.423 66.667 7.64 0.00 0.00 4.70
832 1382 3.777925 CACGAAACAGGCGCTCCG 61.778 66.667 7.64 4.78 37.47 4.63
844 1394 3.562635 GCTCCGCGCTTTAACACT 58.437 55.556 5.56 0.00 35.14 3.55
845 1395 1.132640 GCTCCGCGCTTTAACACTG 59.867 57.895 5.56 0.00 35.14 3.66
846 1396 1.566018 GCTCCGCGCTTTAACACTGT 61.566 55.000 5.56 0.00 35.14 3.55
847 1397 1.705256 CTCCGCGCTTTAACACTGTA 58.295 50.000 5.56 0.00 0.00 2.74
848 1398 2.063266 CTCCGCGCTTTAACACTGTAA 58.937 47.619 5.56 0.00 0.00 2.41
849 1399 1.794116 TCCGCGCTTTAACACTGTAAC 59.206 47.619 5.56 0.00 0.00 2.50
850 1400 1.796459 CCGCGCTTTAACACTGTAACT 59.204 47.619 5.56 0.00 0.00 2.24
851 1401 2.159881 CCGCGCTTTAACACTGTAACTC 60.160 50.000 5.56 0.00 0.00 3.01
852 1402 2.159881 CGCGCTTTAACACTGTAACTCC 60.160 50.000 5.56 0.00 0.00 3.85
853 1403 2.803956 GCGCTTTAACACTGTAACTCCA 59.196 45.455 0.00 0.00 0.00 3.86
854 1404 3.363673 GCGCTTTAACACTGTAACTCCAC 60.364 47.826 0.00 0.00 0.00 4.02
857 1407 4.213482 GCTTTAACACTGTAACTCCACCTG 59.787 45.833 0.00 0.00 0.00 4.00
858 1408 2.256117 AACACTGTAACTCCACCTGC 57.744 50.000 0.00 0.00 0.00 4.85
860 1410 1.768870 ACACTGTAACTCCACCTGCTT 59.231 47.619 0.00 0.00 0.00 3.91
862 1412 1.348036 ACTGTAACTCCACCTGCTTCC 59.652 52.381 0.00 0.00 0.00 3.46
863 1413 0.320374 TGTAACTCCACCTGCTTCCG 59.680 55.000 0.00 0.00 0.00 4.30
864 1414 0.391263 GTAACTCCACCTGCTTCCGG 60.391 60.000 0.00 0.00 0.00 5.14
865 1415 0.543410 TAACTCCACCTGCTTCCGGA 60.543 55.000 0.00 0.00 0.00 5.14
868 1418 2.046892 CCACCTGCTTCCGGAGTG 60.047 66.667 12.60 12.60 0.00 3.51
869 1419 2.583441 CCACCTGCTTCCGGAGTGA 61.583 63.158 19.37 0.00 0.00 3.41
870 1420 1.371183 CACCTGCTTCCGGAGTGAA 59.629 57.895 14.00 1.29 0.00 3.18
871 1421 0.671781 CACCTGCTTCCGGAGTGAAG 60.672 60.000 14.00 10.55 43.71 3.02
876 1426 2.832931 CTTCCGGAGTGAAGCTGTG 58.167 57.895 3.34 0.00 35.72 3.66
878 1428 1.118965 TTCCGGAGTGAAGCTGTGGA 61.119 55.000 3.34 0.00 0.00 4.02
879 1429 1.079543 CCGGAGTGAAGCTGTGGAG 60.080 63.158 0.00 0.00 0.00 3.86
892 1442 0.824109 TGTGGAGCAGAGGTAATCCG 59.176 55.000 0.00 0.00 39.05 4.18
893 1443 1.112113 GTGGAGCAGAGGTAATCCGA 58.888 55.000 0.00 0.00 39.05 4.55
894 1444 1.480954 GTGGAGCAGAGGTAATCCGAA 59.519 52.381 0.00 0.00 39.05 4.30
895 1445 1.480954 TGGAGCAGAGGTAATCCGAAC 59.519 52.381 0.00 0.00 39.05 3.95
896 1446 1.480954 GGAGCAGAGGTAATCCGAACA 59.519 52.381 0.00 0.00 39.05 3.18
897 1447 2.482142 GGAGCAGAGGTAATCCGAACAG 60.482 54.545 0.00 0.00 39.05 3.16
898 1448 1.482593 AGCAGAGGTAATCCGAACAGG 59.517 52.381 0.00 0.00 42.97 4.00
899 1449 1.473434 GCAGAGGTAATCCGAACAGGG 60.473 57.143 0.00 0.00 41.52 4.45
900 1450 0.831307 AGAGGTAATCCGAACAGGGC 59.169 55.000 0.00 0.00 41.52 5.19
901 1451 0.529992 GAGGTAATCCGAACAGGGCG 60.530 60.000 0.00 0.00 41.52 6.13
902 1452 0.974010 AGGTAATCCGAACAGGGCGA 60.974 55.000 0.00 0.00 41.52 5.54
952 1515 5.591877 ACCAATAAGATCACTCATTTCTGGC 59.408 40.000 0.00 0.00 0.00 4.85
1033 1596 1.565305 GCGTCTGAATCGATGCTTCT 58.435 50.000 4.68 0.00 41.55 2.85
1300 1863 0.107848 CGTTTAGCTCCCGGTTCCAT 60.108 55.000 0.00 0.00 0.00 3.41
1316 1879 0.813184 CCATTTGATCTGCCGCTGTT 59.187 50.000 0.00 0.00 0.00 3.16
1317 1880 1.203052 CCATTTGATCTGCCGCTGTTT 59.797 47.619 0.00 0.00 0.00 2.83
1318 1881 2.423185 CCATTTGATCTGCCGCTGTTTA 59.577 45.455 0.00 0.00 0.00 2.01
1319 1882 3.429085 CATTTGATCTGCCGCTGTTTAC 58.571 45.455 0.00 0.00 0.00 2.01
1341 1907 4.141574 ACTCCAGTAGACGAGATAGCTTCT 60.142 45.833 0.00 0.00 37.41 2.85
1342 1908 5.070714 ACTCCAGTAGACGAGATAGCTTCTA 59.929 44.000 0.00 0.00 33.74 2.10
1343 1909 5.299148 TCCAGTAGACGAGATAGCTTCTAC 58.701 45.833 10.56 10.56 40.47 2.59
1399 1965 4.912766 GCCGTAATTATCTTCACTCTCGAG 59.087 45.833 5.93 5.93 0.00 4.04
1417 1986 1.945394 GAGACCTCGTAGCACCGATAA 59.055 52.381 0.00 0.00 36.08 1.75
1477 2046 7.118496 AGGTGGATCTCTTGATTTACTAGTG 57.882 40.000 5.39 0.00 32.19 2.74
1490 2059 6.316140 TGATTTACTAGTGCTGTAATGCAAGG 59.684 38.462 5.39 0.00 45.12 3.61
1519 2088 3.510719 TGGCGTTTATGTTACTACCGAC 58.489 45.455 0.00 0.00 0.00 4.79
1541 2110 4.629200 ACTTGCATTTCAGAAGATCGAGAC 59.371 41.667 0.00 0.00 0.00 3.36
1586 2155 4.155644 GCTTATTATGCCATTCCAGCTCTC 59.844 45.833 0.00 0.00 0.00 3.20
1605 2174 3.512329 TCTCAATTCATGTGCCTGCAAAT 59.488 39.130 0.00 0.00 0.00 2.32
1633 2203 1.539388 TCAGGCAAAATGGTTAGCACG 59.461 47.619 0.00 0.00 0.00 5.34
1641 2211 3.988379 AATGGTTAGCACGCATATTGG 57.012 42.857 0.00 0.00 0.00 3.16
1678 2248 6.649557 GCCATTTATGTGTATACCTGAGTACC 59.350 42.308 0.00 0.00 0.00 3.34
1679 2249 7.688328 GCCATTTATGTGTATACCTGAGTACCA 60.688 40.741 0.00 0.00 0.00 3.25
1680 2250 8.208224 CCATTTATGTGTATACCTGAGTACCAA 58.792 37.037 0.00 0.00 0.00 3.67
1681 2251 9.778741 CATTTATGTGTATACCTGAGTACCAAT 57.221 33.333 0.00 0.00 0.00 3.16
1687 2257 9.661563 TGTGTATACCTGAGTACCAATTAAAAG 57.338 33.333 0.00 0.00 0.00 2.27
1695 2265 8.925700 CCTGAGTACCAATTAAAAGAAAATTGC 58.074 33.333 3.57 0.00 41.11 3.56
1727 2297 4.070009 CCCGGCACTATAAATAGAAACCC 58.930 47.826 0.00 0.00 34.50 4.11
1732 2302 6.369065 CGGCACTATAAATAGAAACCCAGATC 59.631 42.308 4.02 0.00 34.50 2.75
1740 2310 1.918262 AGAAACCCAGATCTGCATCCA 59.082 47.619 17.76 0.00 0.00 3.41
1741 2311 2.019984 GAAACCCAGATCTGCATCCAC 58.980 52.381 17.76 3.13 0.00 4.02
1852 2422 8.691661 TGATTAAAAGAAACAGGTCTAGCTTT 57.308 30.769 0.00 0.00 0.00 3.51
1906 2476 2.608752 GGTGCATGAGGTTCTTGCTTTG 60.609 50.000 15.14 0.00 44.77 2.77
1919 2489 6.273071 GTTCTTGCTTTGAAACCATGTACTT 58.727 36.000 0.00 0.00 0.00 2.24
1923 2493 7.918562 TCTTGCTTTGAAACCATGTACTTTTAC 59.081 33.333 0.00 0.00 0.00 2.01
1996 2570 2.884012 TGAACTTGTGAATGCCGAATGT 59.116 40.909 0.00 0.00 0.00 2.71
2001 2575 3.052455 TGTGAATGCCGAATGTACACT 57.948 42.857 0.00 0.00 0.00 3.55
2031 2605 6.431198 AGCCATAACTGTTTTTATGTACGG 57.569 37.500 0.00 0.00 37.64 4.02
2080 2655 5.866207 AGACCCTGTTTAACTGTAAGGAAG 58.134 41.667 1.37 0.00 39.30 3.46
2089 2664 9.841295 TGTTTAACTGTAAGGAAGATGTTTACT 57.159 29.630 0.00 0.00 39.30 2.24
2104 2679 9.672673 AAGATGTTTACTGTCAATATTAGCTGT 57.327 29.630 0.00 0.00 0.00 4.40
2105 2680 9.672673 AGATGTTTACTGTCAATATTAGCTGTT 57.327 29.630 0.00 0.00 0.00 3.16
2151 2726 9.927668 ATCGTAATTTCCTTTCATTTCAATGTT 57.072 25.926 0.00 0.00 37.65 2.71
2160 2735 6.762661 CCTTTCATTTCAATGTTGTTCTGGTT 59.237 34.615 0.00 0.00 37.65 3.67
2163 2738 6.744112 TCATTTCAATGTTGTTCTGGTTACC 58.256 36.000 0.00 0.00 37.65 2.85
2179 2754 1.116308 TACCGTAATGCAGCTGGCTA 58.884 50.000 17.12 0.00 45.15 3.93
2181 2756 1.134098 ACCGTAATGCAGCTGGCTATT 60.134 47.619 17.12 11.76 45.15 1.73
2224 2799 6.959671 TTTAACCTTTTGCAACTTGAAGTG 57.040 33.333 0.00 0.00 0.00 3.16
2227 2802 3.260632 ACCTTTTGCAACTTGAAGTGGTT 59.739 39.130 0.00 0.00 0.00 3.67
2228 2803 4.252878 CCTTTTGCAACTTGAAGTGGTTT 58.747 39.130 0.00 0.00 0.00 3.27
2229 2804 5.046950 ACCTTTTGCAACTTGAAGTGGTTTA 60.047 36.000 0.00 0.00 0.00 2.01
2377 3171 0.592637 TTCAAGGAAGACGTCGCGTA 59.407 50.000 10.46 0.00 41.37 4.42
2389 3183 3.568538 ACGTCGCGTAGTTTTAATCTGT 58.431 40.909 5.77 0.00 38.73 3.41
2438 3232 9.567776 TTCACAGTTAAATAAATCACAAGGAGA 57.432 29.630 0.00 0.00 0.00 3.71
2581 3375 7.201145 CCGTAGTTACTGTCATACTAAATGCT 58.799 38.462 0.00 0.00 0.00 3.79
2592 3386 6.961554 GTCATACTAAATGCTGTTTTTCTCCG 59.038 38.462 0.00 0.00 0.00 4.63
2611 3405 1.870402 CGGTTGTAGCACACACATTGA 59.130 47.619 0.00 0.00 36.69 2.57
2838 3637 9.997482 GACTTGTATGTAAGTTTCTTGTTCAAA 57.003 29.630 0.00 0.00 40.78 2.69
2897 3697 8.540388 TGTCATTCTATCTGTTAGCCTAAGTTT 58.460 33.333 0.00 0.00 0.00 2.66
2899 3699 8.982723 TCATTCTATCTGTTAGCCTAAGTTTCT 58.017 33.333 0.00 0.00 0.00 2.52
2900 3700 9.606631 CATTCTATCTGTTAGCCTAAGTTTCTT 57.393 33.333 0.00 0.00 0.00 2.52
2901 3701 9.606631 ATTCTATCTGTTAGCCTAAGTTTCTTG 57.393 33.333 0.00 0.00 0.00 3.02
2902 3702 8.135382 TCTATCTGTTAGCCTAAGTTTCTTGT 57.865 34.615 0.00 0.00 0.00 3.16
2904 3704 7.674471 ATCTGTTAGCCTAAGTTTCTTGTTC 57.326 36.000 0.00 0.00 0.00 3.18
2905 3705 6.588204 TCTGTTAGCCTAAGTTTCTTGTTCA 58.412 36.000 0.00 0.00 0.00 3.18
2906 3706 7.051623 TCTGTTAGCCTAAGTTTCTTGTTCAA 58.948 34.615 0.00 0.00 0.00 2.69
2908 3708 4.837896 AGCCTAAGTTTCTTGTTCAAGC 57.162 40.909 7.58 0.00 0.00 4.01
2909 3709 4.464947 AGCCTAAGTTTCTTGTTCAAGCT 58.535 39.130 7.58 0.00 0.00 3.74
2910 3710 4.276926 AGCCTAAGTTTCTTGTTCAAGCTG 59.723 41.667 7.58 0.00 0.00 4.24
2911 3711 4.275936 GCCTAAGTTTCTTGTTCAAGCTGA 59.724 41.667 7.58 0.00 0.00 4.26
2912 3712 5.048434 GCCTAAGTTTCTTGTTCAAGCTGAT 60.048 40.000 7.58 0.00 0.00 2.90
2913 3713 6.606768 CCTAAGTTTCTTGTTCAAGCTGATC 58.393 40.000 7.58 0.00 0.00 2.92
2915 3715 7.604164 CCTAAGTTTCTTGTTCAAGCTGATCTA 59.396 37.037 7.58 0.00 0.00 1.98
2916 3716 7.992754 AAGTTTCTTGTTCAAGCTGATCTAT 57.007 32.000 7.58 0.00 0.00 1.98
2917 3717 7.992754 AGTTTCTTGTTCAAGCTGATCTATT 57.007 32.000 7.58 0.00 0.00 1.73
2918 3718 9.507329 AAGTTTCTTGTTCAAGCTGATCTATTA 57.493 29.630 7.58 0.00 0.00 0.98
2919 3719 9.678260 AGTTTCTTGTTCAAGCTGATCTATTAT 57.322 29.630 7.58 0.00 0.00 1.28
2920 3720 9.928236 GTTTCTTGTTCAAGCTGATCTATTATC 57.072 33.333 7.58 0.00 0.00 1.75
2921 3721 9.896645 TTTCTTGTTCAAGCTGATCTATTATCT 57.103 29.630 7.58 0.00 0.00 1.98
2922 3722 9.896645 TTCTTGTTCAAGCTGATCTATTATCTT 57.103 29.630 7.58 0.00 0.00 2.40
2923 3723 9.896645 TCTTGTTCAAGCTGATCTATTATCTTT 57.103 29.630 7.58 0.00 0.00 2.52
2924 3724 9.932699 CTTGTTCAAGCTGATCTATTATCTTTG 57.067 33.333 0.00 0.00 0.00 2.77
2925 3725 9.453572 TTGTTCAAGCTGATCTATTATCTTTGT 57.546 29.630 0.00 0.00 0.00 2.83
2926 3726 9.453572 TGTTCAAGCTGATCTATTATCTTTGTT 57.546 29.630 0.00 0.00 0.00 2.83
2963 3765 8.293867 TGCAGTTATTGGTTTAGTTGTCATAAC 58.706 33.333 0.00 0.00 0.00 1.89
3029 3834 1.594331 AAAGAACGGGCTGACACTTC 58.406 50.000 0.00 0.00 0.00 3.01
3042 3861 3.698250 CACTTCGTGTGGAAAGGGA 57.302 52.632 3.97 0.00 42.68 4.20
3043 3862 1.961793 CACTTCGTGTGGAAAGGGAA 58.038 50.000 3.97 0.00 42.68 3.97
3044 3863 2.504367 CACTTCGTGTGGAAAGGGAAT 58.496 47.619 3.97 0.00 42.68 3.01
3045 3864 3.670625 CACTTCGTGTGGAAAGGGAATA 58.329 45.455 3.97 0.00 42.68 1.75
3046 3865 4.261801 CACTTCGTGTGGAAAGGGAATAT 58.738 43.478 3.97 0.00 42.68 1.28
3047 3866 5.424757 CACTTCGTGTGGAAAGGGAATATA 58.575 41.667 3.97 0.00 42.68 0.86
3048 3867 5.878116 CACTTCGTGTGGAAAGGGAATATAA 59.122 40.000 3.97 0.00 42.68 0.98
3049 3868 6.373216 CACTTCGTGTGGAAAGGGAATATAAA 59.627 38.462 3.97 0.00 42.68 1.40
3050 3869 6.373495 ACTTCGTGTGGAAAGGGAATATAAAC 59.627 38.462 0.00 0.00 33.34 2.01
3051 3870 5.806818 TCGTGTGGAAAGGGAATATAAACA 58.193 37.500 0.00 0.00 0.00 2.83
3052 3871 6.419791 TCGTGTGGAAAGGGAATATAAACAT 58.580 36.000 0.00 0.00 0.00 2.71
3053 3872 6.887545 TCGTGTGGAAAGGGAATATAAACATT 59.112 34.615 0.00 0.00 0.00 2.71
3103 3926 5.782893 TGGTCCCTTGTTCATTTTACTTG 57.217 39.130 0.00 0.00 0.00 3.16
3145 3969 2.299013 CAAGTAAGGTTTTGAAGCCCCC 59.701 50.000 0.00 0.00 0.00 5.40
3147 3971 1.893137 GTAAGGTTTTGAAGCCCCCTG 59.107 52.381 0.00 0.00 0.00 4.45
3165 3994 2.092968 CCTGTGCATAGGAAGCTGGTTA 60.093 50.000 24.32 0.00 40.42 2.85
3184 4013 7.476540 TGGTTAGACTAGAAACAGCAATCTA 57.523 36.000 0.00 0.00 0.00 1.98
3195 4024 8.757982 AGAAACAGCAATCTAACATATCCAAT 57.242 30.769 0.00 0.00 0.00 3.16
3256 4088 4.307032 AACAGTATTCATGCCCTCAAGT 57.693 40.909 0.00 0.00 0.00 3.16
3296 4128 9.352191 GATCATCTCTAGTAAACCACCTAACTA 57.648 37.037 0.00 0.00 0.00 2.24
3319 4151 1.360185 TAGGTTCCGGCCAGGTAAAA 58.640 50.000 2.24 0.00 41.99 1.52
3412 4246 7.225538 GCTATACAACTGCAGATTTGATAGTGT 59.774 37.037 23.35 11.31 0.00 3.55
3413 4247 5.869753 ACAACTGCAGATTTGATAGTGTC 57.130 39.130 23.35 0.00 0.00 3.67
3414 4248 5.308014 ACAACTGCAGATTTGATAGTGTCA 58.692 37.500 23.35 0.00 34.25 3.58
3415 4249 5.942236 ACAACTGCAGATTTGATAGTGTCAT 59.058 36.000 23.35 0.00 36.54 3.06
3416 4250 6.128090 ACAACTGCAGATTTGATAGTGTCATG 60.128 38.462 23.35 0.00 36.54 3.07
3417 4251 4.880120 ACTGCAGATTTGATAGTGTCATGG 59.120 41.667 23.35 0.00 36.54 3.66
3418 4252 4.201657 TGCAGATTTGATAGTGTCATGGG 58.798 43.478 0.00 0.00 36.54 4.00
3419 4253 3.004106 GCAGATTTGATAGTGTCATGGGC 59.996 47.826 0.00 0.00 36.54 5.36
3609 4519 7.913789 TCAGGTTTGTAGTGAGGTGTATTTAT 58.086 34.615 0.00 0.00 0.00 1.40
3616 4526 7.272244 TGTAGTGAGGTGTATTTATCCATGTG 58.728 38.462 0.00 0.00 0.00 3.21
3752 4904 3.496692 CCACTTGTCCTGAACCTGATTCA 60.497 47.826 0.00 0.00 45.39 2.57
3831 4983 3.879892 GGGTCAGATATTTTGGTCTCTGC 59.120 47.826 0.00 0.00 36.04 4.26
3847 4999 6.113411 GGTCTCTGCTTTAGCCTTGTAATAA 58.887 40.000 0.00 0.00 41.18 1.40
3861 5013 6.969473 GCCTTGTAATAATTTTCTGCTCTCAC 59.031 38.462 0.00 0.00 0.00 3.51
4064 5216 2.554032 GACTTGTTATTGCAGCCAGTGT 59.446 45.455 0.00 0.00 0.00 3.55
4234 5386 4.921470 TGCTACTTTTCGTGAATACTGC 57.079 40.909 0.00 0.00 0.00 4.40
4392 5803 0.622136 TGCACTGGGATCAAGAGCAT 59.378 50.000 13.31 0.00 0.00 3.79
4446 5857 3.550820 TGTTGCAAGTGACTGGTATGTT 58.449 40.909 0.00 0.00 0.00 2.71
4448 5859 3.769739 TGCAAGTGACTGGTATGTTCT 57.230 42.857 0.00 0.00 0.00 3.01
4449 5860 4.882842 TGCAAGTGACTGGTATGTTCTA 57.117 40.909 0.00 0.00 0.00 2.10
4450 5861 4.566004 TGCAAGTGACTGGTATGTTCTAC 58.434 43.478 0.00 0.00 0.00 2.59
4451 5862 3.933332 GCAAGTGACTGGTATGTTCTACC 59.067 47.826 0.00 0.00 38.07 3.18
4452 5863 4.504858 CAAGTGACTGGTATGTTCTACCC 58.495 47.826 0.00 0.00 36.79 3.69
4453 5864 3.105283 AGTGACTGGTATGTTCTACCCC 58.895 50.000 0.00 0.00 36.79 4.95
4454 5865 2.169978 GTGACTGGTATGTTCTACCCCC 59.830 54.545 0.00 0.00 36.79 5.40
4507 5918 6.187682 ACCCCTTACCACTTCATTATTCTTG 58.812 40.000 0.00 0.00 0.00 3.02
4512 5923 8.454106 CCTTACCACTTCATTATTCTTGAACAG 58.546 37.037 0.00 0.00 0.00 3.16
4513 5924 9.219603 CTTACCACTTCATTATTCTTGAACAGA 57.780 33.333 0.00 0.00 0.00 3.41
4514 5925 9.739276 TTACCACTTCATTATTCTTGAACAGAT 57.261 29.630 0.00 0.00 0.00 2.90
4577 6309 2.572290 GTATCCTGTAATGTGGTGGGC 58.428 52.381 0.00 0.00 0.00 5.36
4675 6522 2.728690 TTGCATCTGCGCTTTGATTT 57.271 40.000 9.73 0.00 45.83 2.17
4823 6720 4.982916 GTCAAGTCCGCCACTAATATACAG 59.017 45.833 0.00 0.00 32.30 2.74
4828 6725 2.287970 CCGCCACTAATATACAGACGCA 60.288 50.000 0.00 0.00 0.00 5.24
4868 6765 8.506168 TTTACCTGGATTGTCTTATTCACATC 57.494 34.615 0.00 0.00 0.00 3.06
4911 6808 7.499895 ACATTTTTCAAGCAATTCCATCAAAGT 59.500 29.630 0.00 0.00 0.00 2.66
5167 7064 5.070001 TGTTGGTCAGAATTACCTTTGGAG 58.930 41.667 0.00 0.00 37.91 3.86
5232 7129 5.006165 CACGATCTGTTTGCTATTCTTCTCC 59.994 44.000 0.00 0.00 0.00 3.71
5352 7249 4.081309 CACTGGCAAATTCCATTTCCTCAT 60.081 41.667 0.00 0.00 35.22 2.90
5415 7312 6.731292 TCTAGTAGATTCATAGCAGCCAAA 57.269 37.500 0.00 0.00 0.00 3.28
5439 7336 8.972458 AAAATGGCTAATAACTTTGTTGGTTT 57.028 26.923 0.00 0.00 0.00 3.27
5464 7361 9.748708 TTCTTCTTCAGTATTGTTCATTTTTGG 57.251 29.630 0.00 0.00 0.00 3.28
5465 7362 8.912988 TCTTCTTCAGTATTGTTCATTTTTGGT 58.087 29.630 0.00 0.00 0.00 3.67
5514 7411 4.161565 CAGCCCTCATACACCTGTAACTTA 59.838 45.833 0.00 0.00 33.76 2.24
5578 7475 5.889853 TGCATCCATCTATTTGCTCTTTCTT 59.110 36.000 0.00 0.00 36.10 2.52
5645 7542 7.772292 AGTCATCATGAAGCTTGCTAATCTTTA 59.228 33.333 2.10 0.00 0.00 1.85
5646 7543 8.566260 GTCATCATGAAGCTTGCTAATCTTTAT 58.434 33.333 2.10 0.00 0.00 1.40
5647 7544 9.128404 TCATCATGAAGCTTGCTAATCTTTATT 57.872 29.630 2.10 0.00 0.00 1.40
5648 7545 9.395707 CATCATGAAGCTTGCTAATCTTTATTC 57.604 33.333 2.10 0.00 0.00 1.75
5666 7596 9.569167 TCTTTATTCGTGACACTCTAATACTTG 57.431 33.333 3.68 0.30 0.00 3.16
5710 7640 1.156736 CTTTTAGTCGGTGGTGCCAG 58.843 55.000 0.00 0.00 36.97 4.85
5714 7644 1.855295 TAGTCGGTGGTGCCAGATTA 58.145 50.000 0.00 0.00 36.97 1.75
5722 7652 4.469657 GGTGGTGCCAGATTAATTATCCA 58.530 43.478 0.00 0.00 37.17 3.41
5766 7696 4.701956 AACCGATGTTATTTTGAGCTGG 57.298 40.909 0.00 0.00 31.36 4.85
5786 7716 1.227999 TTTCTCTGGCTTTGCGTCGG 61.228 55.000 0.00 0.00 0.00 4.79
5939 7869 8.035394 TCTACTCCTACTAATTGCTGTTCAAAG 58.965 37.037 0.00 0.00 38.34 2.77
5961 7892 4.006319 GAGCTTTTTAGTGCTGACTGGAT 58.994 43.478 0.00 0.00 39.91 3.41
6082 8013 9.829507 CATCTACAGTCAGATCTCCTAATTTTT 57.170 33.333 0.00 0.00 32.83 1.94
6107 8038 1.660607 CGCCACTGTACTACTTGCATG 59.339 52.381 0.00 0.00 0.00 4.06
6172 8104 8.742777 TGACAACTATGGATAATATACCCGTAC 58.257 37.037 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.129414 TGGCCTTTAACTTGTTATCCTACA 57.871 37.500 3.32 0.00 0.00 2.74
61 62 5.109210 GCATTGGCCTTTAACTTGTTATCC 58.891 41.667 3.32 0.00 0.00 2.59
63 64 5.736951 TGCATTGGCCTTTAACTTGTTAT 57.263 34.783 3.32 0.00 40.13 1.89
65 66 4.622260 ATGCATTGGCCTTTAACTTGTT 57.378 36.364 3.32 0.00 40.13 2.83
96 97 8.564574 TCAACACTGTTTGCTAAACTATTAAGG 58.435 33.333 11.34 0.00 41.90 2.69
102 103 5.433526 AGGTCAACACTGTTTGCTAAACTA 58.566 37.500 11.34 1.13 41.90 2.24
183 184 9.703892 CGATCCAGTCTCTAAAATATTCTCATT 57.296 33.333 0.00 0.00 0.00 2.57
209 210 4.297299 TGTGTACGATTATCCCTCGTTC 57.703 45.455 3.53 0.00 46.49 3.95
213 214 8.304596 TCAATAGAATGTGTACGATTATCCCTC 58.695 37.037 0.00 0.00 0.00 4.30
221 222 6.283694 AGCACATCAATAGAATGTGTACGAT 58.716 36.000 15.36 0.00 45.28 3.73
254 255 3.764434 ACACGACTCTACACATCCTTCAT 59.236 43.478 0.00 0.00 0.00 2.57
255 256 3.154710 ACACGACTCTACACATCCTTCA 58.845 45.455 0.00 0.00 0.00 3.02
257 258 2.492484 GGACACGACTCTACACATCCTT 59.508 50.000 0.00 0.00 0.00 3.36
261 262 1.183549 GGGGACACGACTCTACACAT 58.816 55.000 0.00 0.00 0.00 3.21
267 268 1.965219 CGAAAGGGGACACGACTCT 59.035 57.895 0.00 0.00 0.00 3.24
289 290 4.730949 TCCGAAACCTAAATCGATCTGT 57.269 40.909 0.00 0.00 41.43 3.41
291 292 4.344102 TCCATCCGAAACCTAAATCGATCT 59.656 41.667 0.00 0.00 41.43 2.75
292 293 4.448060 GTCCATCCGAAACCTAAATCGATC 59.552 45.833 0.00 0.00 41.43 3.69
293 294 4.377897 GTCCATCCGAAACCTAAATCGAT 58.622 43.478 0.00 0.00 41.43 3.59
318 319 1.806623 CGAAGACCGGCCAAATCTAGG 60.807 57.143 0.00 0.00 33.91 3.02
320 321 0.899720 ACGAAGACCGGCCAAATCTA 59.100 50.000 0.00 0.00 43.93 1.98
326 327 0.393820 AAAACTACGAAGACCGGCCA 59.606 50.000 0.00 0.00 43.93 5.36
337 338 4.201685 CGATGAAGGCCTGTAAAAACTACG 60.202 45.833 5.69 0.00 0.00 3.51
362 363 2.381589 GCCGTCCAGAAAAAGAAAACG 58.618 47.619 0.00 0.00 0.00 3.60
373 374 1.546923 TGAAGTAAATCGCCGTCCAGA 59.453 47.619 0.00 0.00 0.00 3.86
402 403 4.415150 TAGGGGACGCCGACGACT 62.415 66.667 0.00 0.00 43.93 4.18
432 433 0.739561 AGAATAGCGACCCGACAGTC 59.260 55.000 0.00 0.00 0.00 3.51
436 437 4.762956 ACTTATAGAATAGCGACCCGAC 57.237 45.455 0.00 0.00 0.00 4.79
439 440 7.039853 ACCTAAGAACTTATAGAATAGCGACCC 60.040 40.741 0.00 0.00 0.00 4.46
454 455 9.363401 AGCAACCTTTTTATAACCTAAGAACTT 57.637 29.630 0.00 0.00 0.00 2.66
456 457 9.011095 AGAGCAACCTTTTTATAACCTAAGAAC 57.989 33.333 0.00 0.00 0.00 3.01
457 458 9.010029 CAGAGCAACCTTTTTATAACCTAAGAA 57.990 33.333 0.00 0.00 0.00 2.52
458 459 8.161425 ACAGAGCAACCTTTTTATAACCTAAGA 58.839 33.333 0.00 0.00 0.00 2.10
459 460 8.336801 ACAGAGCAACCTTTTTATAACCTAAG 57.663 34.615 0.00 0.00 0.00 2.18
460 461 8.161425 AGACAGAGCAACCTTTTTATAACCTAA 58.839 33.333 0.00 0.00 0.00 2.69
462 463 6.543735 AGACAGAGCAACCTTTTTATAACCT 58.456 36.000 0.00 0.00 0.00 3.50
463 464 6.819397 AGACAGAGCAACCTTTTTATAACC 57.181 37.500 0.00 0.00 0.00 2.85
464 465 7.606839 ACCTAGACAGAGCAACCTTTTTATAAC 59.393 37.037 0.00 0.00 0.00 1.89
467 468 5.940470 CACCTAGACAGAGCAACCTTTTTAT 59.060 40.000 0.00 0.00 0.00 1.40
469 470 4.137543 CACCTAGACAGAGCAACCTTTTT 58.862 43.478 0.00 0.00 0.00 1.94
470 471 3.391296 TCACCTAGACAGAGCAACCTTTT 59.609 43.478 0.00 0.00 0.00 2.27
471 472 2.972713 TCACCTAGACAGAGCAACCTTT 59.027 45.455 0.00 0.00 0.00 3.11
472 473 2.300437 GTCACCTAGACAGAGCAACCTT 59.700 50.000 0.00 0.00 46.77 3.50
484 495 7.107639 TGAACATATTTCGATGTCACCTAGA 57.892 36.000 0.00 0.00 39.16 2.43
486 497 7.598869 GCTATGAACATATTTCGATGTCACCTA 59.401 37.037 0.00 0.00 39.16 3.08
490 501 7.041848 CCTTGCTATGAACATATTTCGATGTCA 60.042 37.037 0.00 0.00 39.16 3.58
492 503 6.293626 GCCTTGCTATGAACATATTTCGATGT 60.294 38.462 0.00 0.00 41.92 3.06
514 525 5.441718 TGTTCCTCTTTCATTCATAGCCT 57.558 39.130 0.00 0.00 0.00 4.58
519 530 8.010733 TGAAGTTTTGTTCCTCTTTCATTCAT 57.989 30.769 0.00 0.00 0.00 2.57
522 534 7.545615 GTGTTGAAGTTTTGTTCCTCTTTCATT 59.454 33.333 0.00 0.00 0.00 2.57
535 547 4.815269 TCCTTGGTTGTGTTGAAGTTTTG 58.185 39.130 0.00 0.00 0.00 2.44
538 550 5.675684 AAATCCTTGGTTGTGTTGAAGTT 57.324 34.783 0.00 0.00 0.00 2.66
618 630 7.703621 CGAGTAATTTGAAACGGAAGGAGTATA 59.296 37.037 0.00 0.00 0.00 1.47
619 631 6.534079 CGAGTAATTTGAAACGGAAGGAGTAT 59.466 38.462 0.00 0.00 0.00 2.12
626 1119 3.120923 GCGACGAGTAATTTGAAACGGAA 60.121 43.478 0.00 0.00 0.00 4.30
633 1126 4.092821 CCATTTCTGCGACGAGTAATTTGA 59.907 41.667 0.00 0.00 0.00 2.69
635 1128 4.250464 TCCATTTCTGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
638 1131 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
641 1134 0.302890 GCATCCATTTCTGCGACGAG 59.697 55.000 0.00 0.00 0.00 4.18
643 1136 0.659427 ATGCATCCATTTCTGCGACG 59.341 50.000 0.00 0.00 41.32 5.12
647 1140 4.820716 AGTTCTAGATGCATCCATTTCTGC 59.179 41.667 23.06 6.53 38.87 4.26
648 1141 8.442632 TTTAGTTCTAGATGCATCCATTTCTG 57.557 34.615 23.06 6.03 0.00 3.02
649 1142 9.638176 ATTTTAGTTCTAGATGCATCCATTTCT 57.362 29.630 23.06 17.09 0.00 2.52
654 1147 9.494271 GATGTATTTTAGTTCTAGATGCATCCA 57.506 33.333 23.06 9.05 35.30 3.41
677 1204 8.947115 TGTCGTAGGTATGAATGTATCTAGATG 58.053 37.037 15.79 0.00 0.00 2.90
678 1205 9.516546 TTGTCGTAGGTATGAATGTATCTAGAT 57.483 33.333 10.73 10.73 0.00 1.98
683 1210 9.909644 ATTACTTGTCGTAGGTATGAATGTATC 57.090 33.333 0.00 0.00 0.00 2.24
690 1217 6.682423 TCGAATTACTTGTCGTAGGTATGA 57.318 37.500 0.00 0.00 38.41 2.15
692 1219 6.470235 CGTTTCGAATTACTTGTCGTAGGTAT 59.530 38.462 0.00 0.00 38.41 2.73
695 1222 4.853196 TCGTTTCGAATTACTTGTCGTAGG 59.147 41.667 0.00 0.00 38.41 3.18
696 1223 5.980324 TCGTTTCGAATTACTTGTCGTAG 57.020 39.130 0.00 0.00 38.41 3.51
698 1225 4.149396 CCTTCGTTTCGAATTACTTGTCGT 59.851 41.667 0.00 0.00 44.85 4.34
699 1226 4.383649 TCCTTCGTTTCGAATTACTTGTCG 59.616 41.667 0.00 0.00 44.85 4.35
705 1255 9.259015 GATTTTACTTCCTTCGTTTCGAATTAC 57.741 33.333 0.00 0.00 44.85 1.89
708 1258 7.668525 AGATTTTACTTCCTTCGTTTCGAAT 57.331 32.000 0.00 0.00 44.85 3.34
710 1260 8.592105 TTAAGATTTTACTTCCTTCGTTTCGA 57.408 30.769 0.00 0.00 0.00 3.71
711 1261 7.477733 GCTTAAGATTTTACTTCCTTCGTTTCG 59.522 37.037 6.67 0.00 0.00 3.46
717 1267 9.411801 CAAAAGGCTTAAGATTTTACTTCCTTC 57.588 33.333 6.67 0.00 33.50 3.46
718 1268 8.367911 CCAAAAGGCTTAAGATTTTACTTCCTT 58.632 33.333 6.67 3.14 34.97 3.36
722 1272 7.849322 TCCCAAAAGGCTTAAGATTTTACTT 57.151 32.000 6.67 0.00 34.51 2.24
747 1297 5.187687 CAGGGCCTGAATATTGCAATTTTT 58.812 37.500 29.96 11.84 32.44 1.94
748 1298 4.225717 ACAGGGCCTGAATATTGCAATTTT 59.774 37.500 38.99 16.09 35.18 1.82
750 1300 3.377573 ACAGGGCCTGAATATTGCAATT 58.622 40.909 38.99 9.92 35.18 2.32
751 1301 3.036452 ACAGGGCCTGAATATTGCAAT 57.964 42.857 38.99 17.56 35.18 3.56
752 1302 2.530460 ACAGGGCCTGAATATTGCAA 57.470 45.000 38.99 0.00 35.18 4.08
753 1303 2.530460 AACAGGGCCTGAATATTGCA 57.470 45.000 38.99 0.00 35.18 4.08
754 1304 4.207165 TCTAAACAGGGCCTGAATATTGC 58.793 43.478 38.99 0.00 35.18 3.56
755 1305 6.015940 GGATTCTAAACAGGGCCTGAATATTG 60.016 42.308 38.99 21.41 35.18 1.90
756 1306 6.071320 GGATTCTAAACAGGGCCTGAATATT 58.929 40.000 38.99 26.16 35.18 1.28
757 1307 5.458215 GGGATTCTAAACAGGGCCTGAATAT 60.458 44.000 38.99 22.14 35.18 1.28
758 1308 4.141251 GGGATTCTAAACAGGGCCTGAATA 60.141 45.833 38.99 26.56 35.18 1.75
759 1309 3.373110 GGGATTCTAAACAGGGCCTGAAT 60.373 47.826 38.99 26.08 35.18 2.57
760 1310 2.025321 GGGATTCTAAACAGGGCCTGAA 60.025 50.000 38.99 22.57 35.18 3.02
762 1312 1.284785 TGGGATTCTAAACAGGGCCTG 59.715 52.381 31.62 31.62 37.52 4.85
764 1314 1.685180 GGTGGGATTCTAAACAGGGCC 60.685 57.143 0.00 0.00 0.00 5.80
765 1315 1.285078 AGGTGGGATTCTAAACAGGGC 59.715 52.381 0.00 0.00 0.00 5.19
766 1316 2.945890 GCAGGTGGGATTCTAAACAGGG 60.946 54.545 0.00 0.00 0.00 4.45
767 1317 2.025887 AGCAGGTGGGATTCTAAACAGG 60.026 50.000 0.00 0.00 0.00 4.00
769 1319 2.026262 GGAGCAGGTGGGATTCTAAACA 60.026 50.000 0.00 0.00 0.00 2.83
770 1320 2.026262 TGGAGCAGGTGGGATTCTAAAC 60.026 50.000 0.00 0.00 0.00 2.01
771 1321 2.274542 TGGAGCAGGTGGGATTCTAAA 58.725 47.619 0.00 0.00 0.00 1.85
773 1323 1.770658 CATGGAGCAGGTGGGATTCTA 59.229 52.381 0.00 0.00 0.00 2.10
774 1324 0.549950 CATGGAGCAGGTGGGATTCT 59.450 55.000 0.00 0.00 0.00 2.40
775 1325 0.548031 TCATGGAGCAGGTGGGATTC 59.452 55.000 0.00 0.00 0.00 2.52
776 1326 1.002069 TTCATGGAGCAGGTGGGATT 58.998 50.000 0.00 0.00 0.00 3.01
777 1327 1.002069 TTTCATGGAGCAGGTGGGAT 58.998 50.000 0.00 0.00 0.00 3.85
779 1329 2.734755 TATTTCATGGAGCAGGTGGG 57.265 50.000 0.00 0.00 0.00 4.61
780 1330 3.819337 CTCATATTTCATGGAGCAGGTGG 59.181 47.826 0.00 0.00 0.00 4.61
781 1331 3.819337 CCTCATATTTCATGGAGCAGGTG 59.181 47.826 0.00 0.00 0.00 4.00
782 1332 3.718434 TCCTCATATTTCATGGAGCAGGT 59.282 43.478 0.00 0.00 0.00 4.00
783 1333 4.325119 CTCCTCATATTTCATGGAGCAGG 58.675 47.826 0.00 0.00 37.98 4.85
787 1337 6.070366 TCCATAGCTCCTCATATTTCATGGAG 60.070 42.308 0.00 0.00 45.05 3.86
792 1342 5.157940 GCTCCATAGCTCCTCATATTTCA 57.842 43.478 0.00 0.00 45.85 2.69
808 1358 1.675641 GCCTGTTTCGTGGCTCCAT 60.676 57.895 0.00 0.00 45.26 3.41
809 1359 2.281484 GCCTGTTTCGTGGCTCCA 60.281 61.111 0.00 0.00 45.26 3.86
810 1360 3.423154 CGCCTGTTTCGTGGCTCC 61.423 66.667 0.00 0.00 46.42 4.70
811 1361 4.090057 GCGCCTGTTTCGTGGCTC 62.090 66.667 0.00 0.00 46.42 4.70
813 1363 4.090057 GAGCGCCTGTTTCGTGGC 62.090 66.667 2.29 0.00 45.25 5.01
814 1364 3.423154 GGAGCGCCTGTTTCGTGG 61.423 66.667 2.29 0.00 0.00 4.94
815 1365 3.777925 CGGAGCGCCTGTTTCGTG 61.778 66.667 2.29 0.00 0.00 4.35
828 1378 1.705256 TACAGTGTTAAAGCGCGGAG 58.295 50.000 8.83 0.00 0.00 4.63
829 1379 1.794116 GTTACAGTGTTAAAGCGCGGA 59.206 47.619 8.83 0.00 0.00 5.54
830 1380 1.796459 AGTTACAGTGTTAAAGCGCGG 59.204 47.619 8.83 0.00 0.00 6.46
831 1381 2.159881 GGAGTTACAGTGTTAAAGCGCG 60.160 50.000 0.00 0.00 0.00 6.86
832 1382 2.803956 TGGAGTTACAGTGTTAAAGCGC 59.196 45.455 0.00 0.00 0.00 5.92
833 1383 3.185797 GGTGGAGTTACAGTGTTAAAGCG 59.814 47.826 0.00 0.00 0.00 4.68
834 1384 4.213482 CAGGTGGAGTTACAGTGTTAAAGC 59.787 45.833 0.00 0.00 0.00 3.51
835 1385 4.213482 GCAGGTGGAGTTACAGTGTTAAAG 59.787 45.833 0.00 0.00 0.00 1.85
836 1386 4.131596 GCAGGTGGAGTTACAGTGTTAAA 58.868 43.478 0.00 0.00 0.00 1.52
837 1387 3.389983 AGCAGGTGGAGTTACAGTGTTAA 59.610 43.478 0.00 0.00 0.00 2.01
839 1389 1.768870 AGCAGGTGGAGTTACAGTGTT 59.231 47.619 0.00 0.00 0.00 3.32
840 1390 1.424638 AGCAGGTGGAGTTACAGTGT 58.575 50.000 0.00 0.00 0.00 3.55
842 1392 1.348036 GGAAGCAGGTGGAGTTACAGT 59.652 52.381 0.00 0.00 0.00 3.55
843 1393 1.673033 CGGAAGCAGGTGGAGTTACAG 60.673 57.143 0.00 0.00 0.00 2.74
844 1394 0.320374 CGGAAGCAGGTGGAGTTACA 59.680 55.000 0.00 0.00 0.00 2.41
845 1395 0.391263 CCGGAAGCAGGTGGAGTTAC 60.391 60.000 0.00 0.00 0.00 2.50
846 1396 0.543410 TCCGGAAGCAGGTGGAGTTA 60.543 55.000 0.00 0.00 0.00 2.24
847 1397 1.831652 CTCCGGAAGCAGGTGGAGTT 61.832 60.000 5.23 0.00 42.45 3.01
848 1398 2.203788 TCCGGAAGCAGGTGGAGT 60.204 61.111 0.00 0.00 0.00 3.85
849 1399 2.581354 CTCCGGAAGCAGGTGGAG 59.419 66.667 5.23 1.41 41.82 3.86
850 1400 2.203788 ACTCCGGAAGCAGGTGGA 60.204 61.111 5.23 0.00 0.00 4.02
851 1401 2.046892 CACTCCGGAAGCAGGTGG 60.047 66.667 5.23 0.00 0.00 4.61
852 1402 0.671781 CTTCACTCCGGAAGCAGGTG 60.672 60.000 13.21 13.21 38.01 4.00
853 1403 1.674057 CTTCACTCCGGAAGCAGGT 59.326 57.895 5.23 0.00 38.01 4.00
854 1404 4.606071 CTTCACTCCGGAAGCAGG 57.394 61.111 5.23 0.00 38.01 4.85
858 1408 0.671781 CCACAGCTTCACTCCGGAAG 60.672 60.000 5.23 0.00 45.58 3.46
860 1410 1.533033 TCCACAGCTTCACTCCGGA 60.533 57.895 2.93 2.93 0.00 5.14
862 1412 1.739562 GCTCCACAGCTTCACTCCG 60.740 63.158 0.00 0.00 43.09 4.63
863 1413 4.292784 GCTCCACAGCTTCACTCC 57.707 61.111 0.00 0.00 43.09 3.85
871 1421 1.474143 GGATTACCTCTGCTCCACAGC 60.474 57.143 0.00 0.00 46.76 4.40
873 1423 0.824109 CGGATTACCTCTGCTCCACA 59.176 55.000 0.00 0.00 0.00 4.17
875 1425 1.480954 GTTCGGATTACCTCTGCTCCA 59.519 52.381 0.00 0.00 0.00 3.86
876 1426 1.480954 TGTTCGGATTACCTCTGCTCC 59.519 52.381 0.00 0.00 0.00 4.70
878 1428 1.482593 CCTGTTCGGATTACCTCTGCT 59.517 52.381 0.00 0.00 33.16 4.24
879 1429 1.473434 CCCTGTTCGGATTACCTCTGC 60.473 57.143 0.00 0.00 33.16 4.26
881 1431 0.831307 GCCCTGTTCGGATTACCTCT 59.169 55.000 0.00 0.00 33.16 3.69
882 1432 0.529992 CGCCCTGTTCGGATTACCTC 60.530 60.000 0.00 0.00 33.16 3.85
884 1434 0.808847 GTCGCCCTGTTCGGATTACC 60.809 60.000 0.00 0.00 33.16 2.85
885 1435 0.108520 TGTCGCCCTGTTCGGATTAC 60.109 55.000 0.00 0.00 33.16 1.89
886 1436 0.828022 ATGTCGCCCTGTTCGGATTA 59.172 50.000 0.00 0.00 33.16 1.75
887 1437 0.035439 AATGTCGCCCTGTTCGGATT 60.035 50.000 0.00 0.00 33.16 3.01
888 1438 0.462047 GAATGTCGCCCTGTTCGGAT 60.462 55.000 0.00 0.00 33.16 4.18
889 1439 1.079405 GAATGTCGCCCTGTTCGGA 60.079 57.895 0.00 0.00 33.16 4.55
891 1441 0.389817 TGAGAATGTCGCCCTGTTCG 60.390 55.000 0.00 0.00 0.00 3.95
892 1442 1.079503 GTGAGAATGTCGCCCTGTTC 58.920 55.000 0.00 0.00 0.00 3.18
893 1443 0.396435 TGTGAGAATGTCGCCCTGTT 59.604 50.000 0.00 0.00 34.45 3.16
894 1444 0.615331 ATGTGAGAATGTCGCCCTGT 59.385 50.000 0.00 0.00 34.45 4.00
895 1445 1.742761 AATGTGAGAATGTCGCCCTG 58.257 50.000 0.00 0.00 34.45 4.45
896 1446 2.496899 AAATGTGAGAATGTCGCCCT 57.503 45.000 0.00 0.00 34.45 5.19
897 1447 3.575965 AAAAATGTGAGAATGTCGCCC 57.424 42.857 0.00 0.00 34.45 6.13
930 1492 6.541278 TCTGCCAGAAATGAGTGATCTTATTG 59.459 38.462 0.00 0.00 31.70 1.90
937 1499 4.008330 CACTTCTGCCAGAAATGAGTGAT 58.992 43.478 15.94 0.00 33.65 3.06
952 1515 2.320587 GGCCACGCACTCACTTCTG 61.321 63.158 0.00 0.00 0.00 3.02
1033 1596 4.011023 TGGTTCAGTTTGTTTTTCCTCGA 58.989 39.130 0.00 0.00 0.00 4.04
1300 1863 2.742053 GAGTAAACAGCGGCAGATCAAA 59.258 45.455 1.45 0.00 0.00 2.69
1316 1879 5.293319 AGCTATCTCGTCTACTGGAGTAA 57.707 43.478 0.00 0.00 0.00 2.24
1317 1880 4.959560 AGCTATCTCGTCTACTGGAGTA 57.040 45.455 0.00 0.00 0.00 2.59
1318 1881 3.849563 AGCTATCTCGTCTACTGGAGT 57.150 47.619 0.00 0.00 0.00 3.85
1319 1882 4.385825 AGAAGCTATCTCGTCTACTGGAG 58.614 47.826 0.00 0.00 30.46 3.86
1341 1907 5.372343 TCACCGTCCTTACCTATGTAGTA 57.628 43.478 0.00 0.00 0.00 1.82
1342 1908 4.240881 TCACCGTCCTTACCTATGTAGT 57.759 45.455 0.00 0.00 0.00 2.73
1343 1909 4.885907 TCTTCACCGTCCTTACCTATGTAG 59.114 45.833 0.00 0.00 0.00 2.74
1344 1910 4.858850 TCTTCACCGTCCTTACCTATGTA 58.141 43.478 0.00 0.00 0.00 2.29
1417 1986 4.298626 TCAGTCAGAAGGTATAGCCCAAT 58.701 43.478 0.00 0.00 38.26 3.16
1477 2046 0.680921 TGCTCCCCTTGCATTACAGC 60.681 55.000 0.00 0.00 35.31 4.40
1490 2059 1.102978 ACATAAACGCCAATGCTCCC 58.897 50.000 0.00 0.00 34.43 4.30
1509 2078 5.142061 TCTGAAATGCAAGTCGGTAGTAA 57.858 39.130 8.28 0.00 0.00 2.24
1514 2083 3.126001 TCTTCTGAAATGCAAGTCGGT 57.874 42.857 8.28 0.00 0.00 4.69
1519 2088 4.628766 TGTCTCGATCTTCTGAAATGCAAG 59.371 41.667 0.00 0.00 0.00 4.01
1586 2155 5.365403 AAAATTTGCAGGCACATGAATTG 57.635 34.783 0.00 0.00 0.00 2.32
1605 2174 7.716998 TGCTAACCATTTTGCCTGAATTAAAAA 59.283 29.630 0.00 0.00 33.03 1.94
1629 2199 0.801836 GCCACAACCAATATGCGTGC 60.802 55.000 0.00 0.00 0.00 5.34
1633 2203 2.542597 CATGTGCCACAACCAATATGC 58.457 47.619 0.00 0.00 0.00 3.14
1669 2239 8.925700 GCAATTTTCTTTTAATTGGTACTCAGG 58.074 33.333 9.54 0.00 41.22 3.86
1678 2248 7.445096 ACTTCCCCTGCAATTTTCTTTTAATTG 59.555 33.333 0.00 0.00 42.88 2.32
1679 2249 7.517320 ACTTCCCCTGCAATTTTCTTTTAATT 58.483 30.769 0.00 0.00 0.00 1.40
1680 2250 7.078249 ACTTCCCCTGCAATTTTCTTTTAAT 57.922 32.000 0.00 0.00 0.00 1.40
1681 2251 6.463755 GGACTTCCCCTGCAATTTTCTTTTAA 60.464 38.462 0.00 0.00 0.00 1.52
1682 2252 5.011635 GGACTTCCCCTGCAATTTTCTTTTA 59.988 40.000 0.00 0.00 0.00 1.52
1683 2253 4.202357 GGACTTCCCCTGCAATTTTCTTTT 60.202 41.667 0.00 0.00 0.00 2.27
1684 2254 3.324846 GGACTTCCCCTGCAATTTTCTTT 59.675 43.478 0.00 0.00 0.00 2.52
1712 2282 9.160496 GATGCAGATCTGGGTTTCTATTTATAG 57.840 37.037 23.89 0.00 0.00 1.31
1727 2297 0.835276 TCCTGGTGGATGCAGATCTG 59.165 55.000 18.84 18.84 37.46 2.90
1732 2302 0.325933 TCAAGTCCTGGTGGATGCAG 59.674 55.000 0.00 0.00 45.29 4.41
1740 2310 0.178990 GCTGGGTTTCAAGTCCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
1741 2311 0.111253 AGCTGGGTTTCAAGTCCTGG 59.889 55.000 0.00 0.00 0.00 4.45
1796 2366 4.420214 AGATATAAGGGAAATGGGCCAAGT 59.580 41.667 11.89 0.00 0.00 3.16
1852 2422 7.679783 TCAAACAAGAAATCATACTCCAGAGA 58.320 34.615 0.70 0.00 0.00 3.10
1906 2476 6.910433 CCATATGCGTAAAAGTACATGGTTTC 59.090 38.462 0.00 0.00 30.59 2.78
1996 2570 9.563748 AAAACAGTTATGGCTAACTAAAGTGTA 57.436 29.630 8.40 0.00 44.56 2.90
2025 2599 9.208022 GATGAAAATGATGATAATCTCCGTACA 57.792 33.333 0.00 0.00 0.00 2.90
2026 2600 9.429359 AGATGAAAATGATGATAATCTCCGTAC 57.571 33.333 0.00 0.00 0.00 3.67
2151 2726 3.331150 CTGCATTACGGTAACCAGAACA 58.669 45.455 18.39 5.75 0.00 3.18
2160 2735 1.116308 TAGCCAGCTGCATTACGGTA 58.884 50.000 8.66 0.35 44.83 4.02
2163 2738 3.698029 AAAATAGCCAGCTGCATTACG 57.302 42.857 8.66 0.00 44.83 3.18
2181 2756 9.575783 GGTTAAATAGAAACAACACTGACAAAA 57.424 29.630 0.00 0.00 0.00 2.44
2242 2817 5.606348 TGCAGATTTTAGTGGGTGTTTTT 57.394 34.783 0.00 0.00 0.00 1.94
2307 3101 4.715297 GGGTCATTAGAAGTTCCCTCTGTA 59.285 45.833 0.00 0.00 32.89 2.74
2377 3171 6.018994 GTGTGACACTCGAACAGATTAAAACT 60.019 38.462 8.76 0.00 0.00 2.66
2389 3183 0.529773 GGCACTGTGTGACACTCGAA 60.530 55.000 17.47 0.00 41.94 3.71
2581 3375 2.614983 GTGCTACAACCGGAGAAAAACA 59.385 45.455 9.46 0.00 0.00 2.83
2592 3386 3.753272 AGATCAATGTGTGTGCTACAACC 59.247 43.478 0.00 0.00 41.89 3.77
2870 3670 7.493367 ACTTAGGCTAACAGATAGAATGACAC 58.507 38.462 2.04 0.00 33.04 3.67
2897 3697 9.896645 AAAGATAATAGATCAGCTTGAACAAGA 57.103 29.630 17.19 0.00 40.79 3.02
2899 3699 9.453572 ACAAAGATAATAGATCAGCTTGAACAA 57.546 29.630 0.00 0.00 0.00 2.83
2900 3700 9.453572 AACAAAGATAATAGATCAGCTTGAACA 57.546 29.630 0.00 0.00 0.00 3.18
2905 3705 9.896645 TGAGAAACAAAGATAATAGATCAGCTT 57.103 29.630 0.00 0.00 0.00 3.74
2913 3713 9.017669 GCAGCAAATGAGAAACAAAGATAATAG 57.982 33.333 0.00 0.00 0.00 1.73
2915 3715 7.380536 TGCAGCAAATGAGAAACAAAGATAAT 58.619 30.769 0.00 0.00 0.00 1.28
2916 3716 6.747125 TGCAGCAAATGAGAAACAAAGATAA 58.253 32.000 0.00 0.00 0.00 1.75
2917 3717 6.016024 ACTGCAGCAAATGAGAAACAAAGATA 60.016 34.615 15.27 0.00 0.00 1.98
2918 3718 5.204409 TGCAGCAAATGAGAAACAAAGAT 57.796 34.783 0.00 0.00 0.00 2.40
2919 3719 4.098349 ACTGCAGCAAATGAGAAACAAAGA 59.902 37.500 15.27 0.00 0.00 2.52
2920 3720 4.365723 ACTGCAGCAAATGAGAAACAAAG 58.634 39.130 15.27 0.00 0.00 2.77
2921 3721 4.389890 ACTGCAGCAAATGAGAAACAAA 57.610 36.364 15.27 0.00 0.00 2.83
2922 3722 4.389890 AACTGCAGCAAATGAGAAACAA 57.610 36.364 15.27 0.00 0.00 2.83
2923 3723 5.710513 ATAACTGCAGCAAATGAGAAACA 57.289 34.783 15.27 0.00 0.00 2.83
2924 3724 5.346822 CCAATAACTGCAGCAAATGAGAAAC 59.653 40.000 15.27 0.00 0.00 2.78
2925 3725 5.010922 ACCAATAACTGCAGCAAATGAGAAA 59.989 36.000 15.27 0.00 0.00 2.52
2926 3726 4.523943 ACCAATAACTGCAGCAAATGAGAA 59.476 37.500 15.27 0.00 0.00 2.87
2963 3765 3.084039 TCTTCAATTGGCAGGCAGTAAG 58.916 45.455 5.42 0.00 0.00 2.34
3029 3834 6.693315 ATGTTTATATTCCCTTTCCACACG 57.307 37.500 0.00 0.00 0.00 4.49
3103 3926 2.416747 GCCAAAAATGACAGGAAAGGC 58.583 47.619 0.00 0.00 0.00 4.35
3145 3969 2.119801 AACCAGCTTCCTATGCACAG 57.880 50.000 0.00 0.00 0.00 3.66
3147 3971 3.118592 AGTCTAACCAGCTTCCTATGCAC 60.119 47.826 0.00 0.00 0.00 4.57
3165 3994 9.757227 GATATGTTAGATTGCTGTTTCTAGTCT 57.243 33.333 0.00 0.00 0.00 3.24
3256 4088 8.696374 ACTAGAGATGATCGAACCATTTTAGAA 58.304 33.333 0.00 0.00 0.00 2.10
3296 4128 2.670148 CCTGGCCGGAACCTAAGCT 61.670 63.158 15.09 0.00 33.16 3.74
3333 4167 4.939052 ACTAGACTCGTGGGATTAATGG 57.061 45.455 0.00 0.00 0.00 3.16
3342 4176 4.643784 AGGTTAACCATACTAGACTCGTGG 59.356 45.833 26.26 0.00 38.89 4.94
3414 4248 7.349330 AGAGTTATATATTAGCCATGAGCCCAT 59.651 37.037 0.00 0.00 45.47 4.00
3415 4249 6.673978 AGAGTTATATATTAGCCATGAGCCCA 59.326 38.462 0.00 0.00 45.47 5.36
3416 4250 6.989169 CAGAGTTATATATTAGCCATGAGCCC 59.011 42.308 0.00 0.00 45.47 5.19
3417 4251 7.786030 TCAGAGTTATATATTAGCCATGAGCC 58.214 38.462 0.00 0.00 45.47 4.70
3418 4252 9.829507 ATTCAGAGTTATATATTAGCCATGAGC 57.170 33.333 0.00 0.00 44.25 4.26
3453 4363 3.200825 AGCAGCATAGTGGGTGTAAGAAT 59.799 43.478 0.00 0.00 38.49 2.40
3509 4419 6.350110 CCAACAACCTTCAAGAAAGAGAAACA 60.350 38.462 0.00 0.00 37.12 2.83
3519 4429 0.106918 ACGGCCAACAACCTTCAAGA 60.107 50.000 2.24 0.00 0.00 3.02
3616 4526 6.481954 AAGACGAATTAATCCAAGTGTGTC 57.518 37.500 0.00 0.00 0.00 3.67
3752 4904 5.053978 AGAACTGTGGGTTGAAATCTTCT 57.946 39.130 0.00 0.00 38.41 2.85
3831 4983 9.508567 GAGCAGAAAATTATTACAAGGCTAAAG 57.491 33.333 0.00 0.00 0.00 1.85
3847 4999 4.213564 AGGATTCGTGAGAGCAGAAAAT 57.786 40.909 0.00 0.00 43.69 1.82
3861 5013 6.490721 AGTTCTAGGTAGGAATGTAGGATTCG 59.509 42.308 0.00 0.00 0.00 3.34
3984 5136 9.421399 ACCCTTTTAGACCTATAATGAATTTGG 57.579 33.333 0.00 0.00 0.00 3.28
4064 5216 1.904287 AACAACCTCGCCAGCATTTA 58.096 45.000 0.00 0.00 0.00 1.40
4234 5386 3.356658 CGTTTTTATTTGCGGTTGAGTCG 59.643 43.478 0.00 0.00 0.00 4.18
4392 5803 4.077300 AGAGTTCAACATGTCTGAAGCA 57.923 40.909 17.95 2.03 33.56 3.91
4468 5879 9.465199 GTGGTAAGGGGTAGAACAAATATTTAA 57.535 33.333 0.00 0.00 0.00 1.52
4469 5880 8.838741 AGTGGTAAGGGGTAGAACAAATATTTA 58.161 33.333 0.00 0.00 0.00 1.40
4470 5881 7.705700 AGTGGTAAGGGGTAGAACAAATATTT 58.294 34.615 0.00 0.00 0.00 1.40
4471 5882 7.280044 AGTGGTAAGGGGTAGAACAAATATT 57.720 36.000 0.00 0.00 0.00 1.28
4472 5883 6.903340 AGTGGTAAGGGGTAGAACAAATAT 57.097 37.500 0.00 0.00 0.00 1.28
4473 5884 6.272792 TGAAGTGGTAAGGGGTAGAACAAATA 59.727 38.462 0.00 0.00 0.00 1.40
4474 5885 5.073965 TGAAGTGGTAAGGGGTAGAACAAAT 59.926 40.000 0.00 0.00 0.00 2.32
4475 5886 4.412858 TGAAGTGGTAAGGGGTAGAACAAA 59.587 41.667 0.00 0.00 0.00 2.83
4476 5887 3.975312 TGAAGTGGTAAGGGGTAGAACAA 59.025 43.478 0.00 0.00 0.00 2.83
4477 5888 3.589641 TGAAGTGGTAAGGGGTAGAACA 58.410 45.455 0.00 0.00 0.00 3.18
4478 5889 4.838904 ATGAAGTGGTAAGGGGTAGAAC 57.161 45.455 0.00 0.00 0.00 3.01
4479 5890 7.404980 AGAATAATGAAGTGGTAAGGGGTAGAA 59.595 37.037 0.00 0.00 0.00 2.10
4507 5918 8.410141 AGCAGTAGTAGTTGATTAGATCTGTTC 58.590 37.037 5.18 2.61 0.00 3.18
4512 5923 9.672086 CACTTAGCAGTAGTAGTTGATTAGATC 57.328 37.037 0.00 0.00 0.00 2.75
4513 5924 8.138712 GCACTTAGCAGTAGTAGTTGATTAGAT 58.861 37.037 0.00 0.00 44.79 1.98
4514 5925 7.481642 GCACTTAGCAGTAGTAGTTGATTAGA 58.518 38.462 0.00 0.00 44.79 2.10
4577 6309 8.478877 ACTTCTTCACCTAATCAGTATTACAGG 58.521 37.037 0.00 0.00 30.13 4.00
4675 6522 7.668052 TGGATGCATATGAAAGAATGATGATCA 59.332 33.333 6.97 0.00 0.00 2.92
4776 6673 1.265095 CAATAGGCTGGTTGCGCTATG 59.735 52.381 9.73 0.00 44.05 2.23
4808 6705 3.007979 TGCGTCTGTATATTAGTGGCG 57.992 47.619 0.00 0.00 0.00 5.69
4823 6720 1.571919 ACTGAACACTGTCTTGCGTC 58.428 50.000 0.00 0.00 0.00 5.19
4828 6725 4.881850 CCAGGTAAAACTGAACACTGTCTT 59.118 41.667 0.00 0.00 40.97 3.01
4868 6765 5.679734 AAATGTACTGCAAGACAAGTGAG 57.320 39.130 4.57 0.00 37.43 3.51
4911 6808 0.400213 ATTTGACTGTCCGGGCAAGA 59.600 50.000 11.40 0.00 0.00 3.02
5167 7064 9.897744 TGAACACATCTAAGATCAAACAAAATC 57.102 29.630 0.00 0.00 0.00 2.17
5232 7129 9.330063 ACAGATATTACACTGTTGTATTCCATG 57.670 33.333 0.00 0.00 43.52 3.66
5352 7249 9.908747 TTAAATATTTAGGATTTGGAAGACCGA 57.091 29.630 7.91 0.00 39.42 4.69
5415 7312 8.428852 AGAAACCAACAAAGTTATTAGCCATTT 58.571 29.630 0.00 0.00 0.00 2.32
5439 7336 8.912988 ACCAAAAATGAACAATACTGAAGAAGA 58.087 29.630 0.00 0.00 0.00 2.87
5462 7359 2.096248 GCAAATTTACGGATGGGACCA 58.904 47.619 0.00 0.00 0.00 4.02
5464 7361 3.192633 AGTTGCAAATTTACGGATGGGAC 59.807 43.478 0.00 0.00 0.00 4.46
5465 7362 3.192422 CAGTTGCAAATTTACGGATGGGA 59.808 43.478 0.00 0.00 0.00 4.37
5524 7421 9.605275 TTTTGAATACCAAAATGATGTCACAAA 57.395 25.926 0.00 0.00 46.48 2.83
5555 7452 6.039047 TCAAGAAAGAGCAAATAGATGGATGC 59.961 38.462 0.00 0.00 39.06 3.91
5645 7542 8.904834 AGATACAAGTATTAGAGTGTCACGAAT 58.095 33.333 0.00 2.21 0.00 3.34
5646 7543 8.277490 AGATACAAGTATTAGAGTGTCACGAA 57.723 34.615 0.00 0.00 0.00 3.85
5647 7544 7.860918 AGATACAAGTATTAGAGTGTCACGA 57.139 36.000 0.00 0.00 0.00 4.35
5648 7545 8.799091 CAAAGATACAAGTATTAGAGTGTCACG 58.201 37.037 0.00 0.00 0.00 4.35
5665 7595 8.777413 GCATATGCTAATCAAGACAAAGATACA 58.223 33.333 20.64 0.00 38.21 2.29
5698 7628 2.799126 AATTAATCTGGCACCACCGA 57.201 45.000 0.00 0.00 43.94 4.69
5702 7632 6.372104 TCAATGGATAATTAATCTGGCACCA 58.628 36.000 0.00 0.00 34.75 4.17
5714 7644 6.205464 CAGCACCGTCTAATCAATGGATAATT 59.795 38.462 0.00 0.00 32.09 1.40
5722 7652 3.009723 CAACCAGCACCGTCTAATCAAT 58.990 45.455 0.00 0.00 0.00 2.57
5766 7696 0.110644 CGACGCAAAGCCAGAGAAAC 60.111 55.000 0.00 0.00 0.00 2.78
5786 7716 1.140816 GTGAAGGACGTCAACTGAGC 58.859 55.000 18.91 0.00 0.00 4.26
5806 7736 5.751990 CCACTAGATTGGGTTAACGTATGTC 59.248 44.000 0.00 0.00 32.35 3.06
5939 7869 3.403038 TCCAGTCAGCACTAAAAAGCTC 58.597 45.455 0.00 0.00 39.50 4.09
5961 7892 2.337583 CGGTTCTGAAGATCGCTTTCA 58.662 47.619 0.00 0.00 33.61 2.69
6082 8013 1.612676 AGTAGTACAGTGGCGTCACA 58.387 50.000 24.06 0.00 45.91 3.58
6107 8038 6.799925 CACATACTGTTACGGAAATCAAAACC 59.200 38.462 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.