Multiple sequence alignment - TraesCS4A01G068900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G068900 chr4A 100.000 2942 0 0 1 2942 67258967 67261908 0.000000e+00 5433.0
1 TraesCS4A01G068900 chr4A 75.299 251 45 13 227 469 10167007 10166766 1.440000e-18 104.0
2 TraesCS4A01G068900 chr4B 88.569 1216 90 22 1 1179 472422684 472423887 0.000000e+00 1430.0
3 TraesCS4A01G068900 chr4B 91.304 460 40 0 1230 1689 472428360 472428819 1.920000e-176 628.0
4 TraesCS4A01G068900 chr4B 89.260 419 26 9 2540 2941 472485892 472486308 9.410000e-140 507.0
5 TraesCS4A01G068900 chr4B 86.826 334 30 8 1678 2008 472428754 472429076 7.750000e-96 361.0
6 TraesCS4A01G068900 chr4B 87.786 131 8 3 2096 2225 472429091 472429214 2.360000e-31 147.0
7 TraesCS4A01G068900 chr4B 93.220 59 4 0 1182 1240 472424863 472424921 1.450000e-13 87.9
8 TraesCS4A01G068900 chr4B 93.220 59 4 0 1182 1240 472425269 472425327 1.450000e-13 87.9
9 TraesCS4A01G068900 chr4D 93.043 690 37 6 1670 2354 385986776 385987459 0.000000e+00 998.0
10 TraesCS4A01G068900 chr4D 91.516 719 41 9 475 1185 385985356 385986062 0.000000e+00 972.0
11 TraesCS4A01G068900 chr4D 91.472 598 27 13 2353 2941 385987544 385988126 0.000000e+00 800.0
12 TraesCS4A01G068900 chr4D 92.871 533 37 1 1175 1706 385986328 385986860 0.000000e+00 773.0
13 TraesCS4A01G068900 chr1B 79.404 403 75 8 16 411 39577001 39576600 8.030000e-71 278.0
14 TraesCS4A01G068900 chr6B 80.180 333 58 7 1256 1584 129759181 129758853 2.930000e-60 243.0
15 TraesCS4A01G068900 chr6B 77.936 281 48 7 193 466 287155629 287155902 2.350000e-36 163.0
16 TraesCS4A01G068900 chr6B 75.000 372 66 18 87 433 3716607 3716238 2.360000e-31 147.0
17 TraesCS4A01G068900 chr6D 79.580 333 60 7 1256 1584 57853637 57853309 6.340000e-57 231.0
18 TraesCS4A01G068900 chr6D 76.754 456 63 31 1 438 388330849 388331279 6.390000e-52 215.0
19 TraesCS4A01G068900 chr6D 79.926 269 43 9 184 448 40520073 40520334 1.390000e-43 187.0
20 TraesCS4A01G068900 chr6D 75.740 338 51 20 1 322 381003165 381003487 1.100000e-29 141.0
21 TraesCS4A01G068900 chr6D 77.778 234 43 6 194 425 365269437 365269211 5.110000e-28 135.0
22 TraesCS4A01G068900 chr6A 79.464 336 55 11 1256 1584 72873435 72873107 2.950000e-55 226.0
23 TraesCS4A01G068900 chr6A 81.707 82 11 3 139 218 539626071 539625992 6.810000e-07 65.8
24 TraesCS4A01G068900 chr5D 75.955 445 72 24 4 433 220674408 220673984 2.310000e-46 196.0
25 TraesCS4A01G068900 chr5D 75.258 388 74 11 1 374 505548386 505548765 6.520000e-37 165.0
26 TraesCS4A01G068900 chr5D 89.855 69 7 0 4 72 345184964 345184896 4.040000e-14 89.8
27 TraesCS4A01G068900 chr1D 75.467 375 64 16 4 353 227645411 227645040 1.090000e-34 158.0
28 TraesCS4A01G068900 chr1D 75.625 320 46 18 1 293 80965895 80965581 2.380000e-26 130.0
29 TraesCS4A01G068900 chr5B 75.385 325 76 4 103 424 72106377 72106700 1.410000e-33 154.0
30 TraesCS4A01G068900 chr5A 76.404 267 50 11 185 448 169305927 169305671 6.620000e-27 132.0
31 TraesCS4A01G068900 chr3D 75.294 340 51 20 1 323 463681667 463681990 6.620000e-27 132.0
32 TraesCS4A01G068900 chr3D 72.973 370 68 21 1 353 536328642 536328996 1.870000e-17 100.0
33 TraesCS4A01G068900 chr2B 74.603 252 54 8 185 433 790491162 790491406 5.190000e-18 102.0
34 TraesCS4A01G068900 chr2B 97.436 39 1 0 633 671 97411717 97411679 1.890000e-07 67.6
35 TraesCS4A01G068900 chr2D 74.340 265 50 13 1 251 474995088 474994828 2.410000e-16 97.1
36 TraesCS4A01G068900 chr2D 75.410 244 36 14 12 232 647986277 647986519 2.410000e-16 97.1
37 TraesCS4A01G068900 chr7A 94.286 35 0 2 132 165 721730984 721731017 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G068900 chr4A 67258967 67261908 2941 False 5433.000000 5433 100.000000 1 2942 1 chr4A.!!$F1 2941
1 TraesCS4A01G068900 chr4B 472422684 472429214 6530 False 456.966667 1430 90.154167 1 2225 6 chr4B.!!$F2 2224
2 TraesCS4A01G068900 chr4D 385985356 385988126 2770 False 885.750000 998 92.225500 475 2941 4 chr4D.!!$F1 2466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 191 0.394216 CCAATGCCGACTGAATCCCA 60.394 55.0 0.0 0.0 0.0 4.37 F
1136 1174 0.318441 TCGGACTGCACAAGGAAGAG 59.682 55.0 0.0 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1627 6363 0.036483 TGGTCGTGGTCATGGTCATG 60.036 55.0 4.67 4.67 40.09 3.07 R
2518 7361 0.178975 TGCGGAAACACAGGGGATTT 60.179 50.0 0.00 0.00 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.001815 CGGGCCAAACTTGTTGTAGTG 60.002 52.381 4.39 0.00 0.00 2.74
41 42 2.295349 TGTAGTGGACAGTCGGAAAGTC 59.705 50.000 0.00 3.26 32.86 3.01
53 54 1.347320 GGAAAGTCGTCGTGCTAAGG 58.653 55.000 0.00 0.00 0.00 2.69
59 60 1.226888 CGTCGTGCTAAGGCCCTAC 60.227 63.158 0.00 0.00 37.74 3.18
60 61 1.143401 GTCGTGCTAAGGCCCTACC 59.857 63.158 0.00 0.00 37.74 3.18
64 65 1.074775 TGCTAAGGCCCTACCGGAT 60.075 57.895 9.46 0.00 46.52 4.18
72 73 2.028190 CCTACCGGATCAGCGCAG 59.972 66.667 9.46 0.00 0.00 5.18
126 137 4.465632 AGAACCAACATGTAGACGCATA 57.534 40.909 0.00 0.00 0.00 3.14
129 140 4.939509 ACCAACATGTAGACGCATAAAC 57.060 40.909 0.00 0.00 0.00 2.01
136 147 4.430137 TGTAGACGCATAAACGAAGACT 57.570 40.909 0.00 0.00 36.70 3.24
137 148 4.163552 TGTAGACGCATAAACGAAGACTG 58.836 43.478 0.00 0.00 36.70 3.51
178 189 1.017387 GACCAATGCCGACTGAATCC 58.983 55.000 0.00 0.00 0.00 3.01
179 190 0.394352 ACCAATGCCGACTGAATCCC 60.394 55.000 0.00 0.00 0.00 3.85
180 191 0.394216 CCAATGCCGACTGAATCCCA 60.394 55.000 0.00 0.00 0.00 4.37
181 192 0.734889 CAATGCCGACTGAATCCCAC 59.265 55.000 0.00 0.00 0.00 4.61
183 194 1.899437 ATGCCGACTGAATCCCACGT 61.899 55.000 0.00 0.00 0.00 4.49
187 198 1.560923 CGACTGAATCCCACGTGATC 58.439 55.000 19.30 10.13 0.00 2.92
196 207 1.313091 CCCACGTGATCTGTCGGAGA 61.313 60.000 19.30 0.00 34.25 3.71
239 250 2.655364 CGCTAGACGCATCACCGG 60.655 66.667 0.00 0.00 39.08 5.28
262 273 2.798364 GGGCTAGTCGGGGAGAAGC 61.798 68.421 0.00 0.00 33.15 3.86
268 279 3.553302 GCTAGTCGGGGAGAAGCTTATTC 60.553 52.174 0.00 0.00 31.66 1.75
285 296 2.203126 CCATCTTCAGGGAGGCGC 60.203 66.667 0.00 0.00 0.00 6.53
289 300 4.785453 CTTCAGGGAGGCGCCACC 62.785 72.222 32.47 32.47 38.95 4.61
312 323 1.060842 CTCGTCTTCGTGAGTAGGACG 59.939 57.143 7.35 7.35 43.37 4.79
315 326 1.132643 GTCTTCGTGAGTAGGACGCAT 59.867 52.381 0.00 0.00 36.75 4.73
349 360 7.018826 CGAAATCATAAAACACCTAAAAGCGA 58.981 34.615 0.00 0.00 0.00 4.93
350 361 7.535940 CGAAATCATAAAACACCTAAAAGCGAA 59.464 33.333 0.00 0.00 0.00 4.70
376 387 4.748144 CCTCCCACCAGCAAGGGC 62.748 72.222 0.00 0.00 45.07 5.19
377 388 4.748144 CTCCCACCAGCAAGGGCC 62.748 72.222 0.00 0.00 45.07 5.80
453 465 2.487428 CGTCTGCGGGAGTCAGAG 59.513 66.667 0.00 0.00 41.32 3.35
464 476 2.306219 GGGAGTCAGAGCCCTAAGTTTT 59.694 50.000 0.00 0.00 41.31 2.43
543 556 2.806608 ACTTTTGCCTCACATGCTTG 57.193 45.000 0.00 0.00 0.00 4.01
544 557 2.034124 ACTTTTGCCTCACATGCTTGT 58.966 42.857 0.00 0.00 36.15 3.16
609 639 5.847670 TTTGCGCTTTGTTTTGTTTACTT 57.152 30.435 9.73 0.00 0.00 2.24
610 640 5.847670 TTGCGCTTTGTTTTGTTTACTTT 57.152 30.435 9.73 0.00 0.00 2.66
611 641 5.443142 TGCGCTTTGTTTTGTTTACTTTC 57.557 34.783 9.73 0.00 0.00 2.62
674 706 1.584724 TCTTCCATTCACCCTCCCTC 58.415 55.000 0.00 0.00 0.00 4.30
679 711 0.394565 CATTCACCCTCCCTCGATCC 59.605 60.000 0.00 0.00 0.00 3.36
704 736 6.238374 CGGTCGATAACTTAATCCTGCAAAAT 60.238 38.462 0.00 0.00 0.00 1.82
756 788 1.164411 TGAGCATTTAACGGCCAGTG 58.836 50.000 2.24 0.00 0.00 3.66
766 798 3.435186 GGCCAGTGCGAGGAAAGC 61.435 66.667 0.00 0.00 38.85 3.51
771 803 1.018226 CAGTGCGAGGAAAGCTGGAG 61.018 60.000 0.00 0.00 35.28 3.86
836 874 1.369091 CTAATCTGCAAAGCCGGCGT 61.369 55.000 23.20 16.90 0.00 5.68
838 876 3.612247 ATCTGCAAAGCCGGCGTCT 62.612 57.895 23.20 6.88 0.00 4.18
852 890 2.034842 CGGCGTCTAATTTAGCTGTTCG 60.035 50.000 0.00 1.12 0.00 3.95
858 896 5.220043 CGTCTAATTTAGCTGTTCGTCACTG 60.220 44.000 0.00 0.00 0.00 3.66
979 1017 3.452474 CTTCCTTAGCATCTCCGAACAG 58.548 50.000 0.00 0.00 0.00 3.16
1032 1070 3.419759 CGGCGGTTTCTGTTCGGG 61.420 66.667 0.00 0.00 0.00 5.14
1136 1174 0.318441 TCGGACTGCACAAGGAAGAG 59.682 55.000 0.00 0.00 0.00 2.85
1242 5978 4.452114 CCTAACTGGCCTTTTTCAATTTGC 59.548 41.667 3.32 0.00 0.00 3.68
1266 6002 0.321122 GGCTTGTGTCAGGTCTCCAG 60.321 60.000 0.00 0.00 0.00 3.86
1287 6023 3.877508 AGGTTGCTGTCAAGTGTAAGAAC 59.122 43.478 0.00 0.00 31.93 3.01
1332 6068 2.334946 CGTGGGGCATGTGGACAAG 61.335 63.158 0.00 0.00 0.00 3.16
1468 6204 2.771639 CCCTCCAAGATCGTCGCGA 61.772 63.158 3.71 3.71 41.13 5.87
1548 6284 4.081185 TCGGCTGAATGCGCCTCA 62.081 61.111 4.18 7.06 45.37 3.86
1626 6362 4.097361 GTCCCTCCCAAGCCCGAC 62.097 72.222 0.00 0.00 0.00 4.79
1629 6365 3.411517 CCTCCCAAGCCCGACCAT 61.412 66.667 0.00 0.00 0.00 3.55
1630 6366 2.124570 CTCCCAAGCCCGACCATG 60.125 66.667 0.00 0.00 0.00 3.66
1631 6367 2.609299 TCCCAAGCCCGACCATGA 60.609 61.111 0.00 0.00 0.00 3.07
1632 6368 2.438434 CCCAAGCCCGACCATGAC 60.438 66.667 0.00 0.00 0.00 3.06
1633 6369 2.438434 CCAAGCCCGACCATGACC 60.438 66.667 0.00 0.00 0.00 4.02
1634 6370 2.350895 CAAGCCCGACCATGACCA 59.649 61.111 0.00 0.00 0.00 4.02
1635 6371 1.077501 CAAGCCCGACCATGACCAT 60.078 57.895 0.00 0.00 0.00 3.55
1636 6372 1.077501 AAGCCCGACCATGACCATG 60.078 57.895 0.00 3.11 38.51 3.66
1637 6373 1.561769 AAGCCCGACCATGACCATGA 61.562 55.000 11.28 0.00 41.20 3.07
1638 6374 1.819632 GCCCGACCATGACCATGAC 60.820 63.158 11.28 4.77 41.20 3.06
1639 6375 1.153168 CCCGACCATGACCATGACC 60.153 63.158 11.28 2.42 41.20 4.02
1640 6376 1.601703 CCGACCATGACCATGACCA 59.398 57.895 11.28 0.00 41.20 4.02
1641 6377 0.744414 CCGACCATGACCATGACCAC 60.744 60.000 11.28 0.28 41.20 4.16
1642 6378 1.083806 CGACCATGACCATGACCACG 61.084 60.000 11.28 7.37 41.20 4.94
1643 6379 0.249120 GACCATGACCATGACCACGA 59.751 55.000 11.28 0.00 41.20 4.35
1644 6380 0.036388 ACCATGACCATGACCACGAC 60.036 55.000 11.28 0.00 41.20 4.34
1645 6381 0.744414 CCATGACCATGACCACGACC 60.744 60.000 11.28 0.00 41.20 4.79
1646 6382 0.036483 CATGACCATGACCACGACCA 60.036 55.000 4.03 0.00 41.20 4.02
1647 6383 0.911769 ATGACCATGACCACGACCAT 59.088 50.000 0.00 0.00 0.00 3.55
1648 6384 0.036483 TGACCATGACCACGACCATG 60.036 55.000 0.00 0.00 39.72 3.66
1649 6385 0.249120 GACCATGACCACGACCATGA 59.751 55.000 0.00 0.00 41.88 3.07
1650 6386 0.911769 ACCATGACCACGACCATGAT 59.088 50.000 0.00 0.00 41.88 2.45
1651 6387 1.134401 ACCATGACCACGACCATGATC 60.134 52.381 0.00 0.00 41.88 2.92
1652 6388 1.134431 CCATGACCACGACCATGATCA 60.134 52.381 0.00 0.00 41.88 2.92
1653 6389 2.486013 CCATGACCACGACCATGATCAT 60.486 50.000 1.18 1.18 41.88 2.45
1654 6390 2.314323 TGACCACGACCATGATCATG 57.686 50.000 25.97 25.97 38.51 3.07
1655 6391 1.830477 TGACCACGACCATGATCATGA 59.170 47.619 32.71 10.18 41.20 3.07
1656 6392 2.205074 GACCACGACCATGATCATGAC 58.795 52.381 32.71 23.83 41.20 3.06
1657 6393 1.134401 ACCACGACCATGATCATGACC 60.134 52.381 32.71 22.19 41.20 4.02
1658 6394 1.134431 CCACGACCATGATCATGACCA 60.134 52.381 32.71 0.00 41.20 4.02
1659 6395 2.486013 CCACGACCATGATCATGACCAT 60.486 50.000 32.71 16.99 41.20 3.55
1660 6396 2.546789 CACGACCATGATCATGACCATG 59.453 50.000 32.71 21.56 41.20 3.66
1674 6410 2.027285 TGACCATGACAACGACCATGAT 60.027 45.455 0.00 0.00 41.88 2.45
1677 6413 2.352651 CCATGACAACGACCATGATCAC 59.647 50.000 0.00 0.00 41.88 3.06
1707 6455 1.227645 CGACCATGGCCACGATCAT 60.228 57.895 8.16 0.00 0.00 2.45
1708 6456 1.501337 CGACCATGGCCACGATCATG 61.501 60.000 8.16 0.00 40.12 3.07
1709 6457 0.179048 GACCATGGCCACGATCATGA 60.179 55.000 8.16 0.00 42.25 3.07
1710 6458 0.475475 ACCATGGCCACGATCATGAT 59.525 50.000 8.16 8.25 42.25 2.45
1711 6459 1.162698 CCATGGCCACGATCATGATC 58.837 55.000 23.42 23.42 42.25 2.92
1712 6460 1.543871 CCATGGCCACGATCATGATCA 60.544 52.381 30.13 14.36 42.25 2.92
1713 6461 1.534163 CATGGCCACGATCATGATCAC 59.466 52.381 30.13 17.87 42.25 3.06
1714 6462 0.530431 TGGCCACGATCATGATCACG 60.530 55.000 30.13 21.93 37.69 4.35
1715 6463 0.249447 GGCCACGATCATGATCACGA 60.249 55.000 30.13 1.75 37.69 4.35
1716 6464 0.855349 GCCACGATCATGATCACGAC 59.145 55.000 30.13 15.76 37.69 4.34
1717 6465 1.491670 CCACGATCATGATCACGACC 58.508 55.000 30.13 7.96 37.69 4.79
1718 6466 1.202405 CCACGATCATGATCACGACCA 60.202 52.381 30.13 0.00 37.69 4.02
1719 6467 2.546584 CCACGATCATGATCACGACCAT 60.547 50.000 30.13 7.90 37.69 3.55
1720 6468 2.473984 CACGATCATGATCACGACCATG 59.526 50.000 30.13 16.26 40.97 3.66
1721 6469 2.064014 CGATCATGATCACGACCATGG 58.936 52.381 30.13 11.19 40.26 3.66
1722 6470 1.802960 GATCATGATCACGACCATGGC 59.197 52.381 27.30 3.65 40.26 4.40
1723 6471 0.179048 TCATGATCACGACCATGGCC 60.179 55.000 13.04 0.00 40.26 5.36
1724 6472 0.464193 CATGATCACGACCATGGCCA 60.464 55.000 13.04 8.56 37.19 5.36
1750 6498 1.266178 TGACCATGACCACGATCACT 58.734 50.000 0.00 0.00 0.00 3.41
1751 6499 1.204704 TGACCATGACCACGATCACTC 59.795 52.381 0.00 0.00 0.00 3.51
2003 6754 2.129607 GTTGAAGCCACGAACGAGTTA 58.870 47.619 0.14 0.00 0.00 2.24
2004 6755 2.735134 GTTGAAGCCACGAACGAGTTAT 59.265 45.455 0.14 0.00 0.00 1.89
2010 6761 3.120786 AGCCACGAACGAGTTATTTTTCG 60.121 43.478 0.14 1.27 44.98 3.46
2022 6773 4.518970 AGTTATTTTTCGCTCCTTTGCTCA 59.481 37.500 0.00 0.00 0.00 4.26
2084 6835 4.320953 GCGAGGACGATTGTTTTTCATTTC 59.679 41.667 0.00 0.00 42.66 2.17
2105 6857 0.389817 TGAACTGGATTGCGAGGACG 60.390 55.000 0.00 0.00 42.93 4.79
2117 6869 2.029739 TGCGAGGACGATTGTTAGTTCA 60.030 45.455 0.00 0.00 42.66 3.18
2152 6905 5.046529 CCATTTCTGGAGTAGTTCGATCTG 58.953 45.833 6.25 0.00 46.37 2.90
2153 6906 3.784701 TTCTGGAGTAGTTCGATCTGC 57.215 47.619 6.25 4.90 0.00 4.26
2154 6907 2.723273 TCTGGAGTAGTTCGATCTGCA 58.277 47.619 13.12 7.61 0.00 4.41
2155 6908 3.291584 TCTGGAGTAGTTCGATCTGCAT 58.708 45.455 13.12 0.11 0.00 3.96
2156 6909 3.316588 TCTGGAGTAGTTCGATCTGCATC 59.683 47.826 13.12 7.94 0.00 3.91
2200 6953 3.439129 TCACTCTGATGTACCGTGTGTAG 59.561 47.826 0.00 0.00 32.18 2.74
2207 6963 3.902261 TGTACCGTGTGTAGTACAGTG 57.098 47.619 2.39 0.00 42.87 3.66
2212 6968 3.047796 CCGTGTGTAGTACAGTGTGTTC 58.952 50.000 5.88 0.00 40.69 3.18
2280 7036 0.318441 TTCTGCCACTGACCTTCTCG 59.682 55.000 0.00 0.00 0.00 4.04
2316 7072 4.264253 TGAGATGCAACTTTGGTAGATGG 58.736 43.478 0.00 0.00 0.00 3.51
2327 7083 1.048601 GGTAGATGGATGAGCGGGAA 58.951 55.000 0.00 0.00 0.00 3.97
2354 7110 6.695713 CCCAGAAAAACTTGCTTAACAGTTAC 59.304 38.462 0.00 0.00 0.00 2.50
2355 7111 6.695713 CCAGAAAAACTTGCTTAACAGTTACC 59.304 38.462 0.00 0.00 0.00 2.85
2356 7112 7.416326 CCAGAAAAACTTGCTTAACAGTTACCT 60.416 37.037 0.00 0.00 0.00 3.08
2404 7246 3.607370 GACGTCCTGCCCCACTTCC 62.607 68.421 3.51 0.00 0.00 3.46
2406 7248 4.410400 GTCCTGCCCCACTTCCGG 62.410 72.222 0.00 0.00 0.00 5.14
2414 7256 1.667151 CCCACTTCCGGTCGTACAA 59.333 57.895 0.00 0.00 0.00 2.41
2433 7275 7.816031 TCGTACAATTTAAGGTTCTGGACTAAG 59.184 37.037 0.00 0.00 0.00 2.18
2440 7282 4.657436 AGGTTCTGGACTAAGCTATTCG 57.343 45.455 0.00 0.00 33.13 3.34
2441 7283 3.385111 AGGTTCTGGACTAAGCTATTCGG 59.615 47.826 0.00 0.00 33.13 4.30
2442 7284 3.492829 GGTTCTGGACTAAGCTATTCGGG 60.493 52.174 0.00 0.00 0.00 5.14
2443 7285 3.028094 TCTGGACTAAGCTATTCGGGT 57.972 47.619 0.00 0.00 0.00 5.28
2444 7286 2.693591 TCTGGACTAAGCTATTCGGGTG 59.306 50.000 0.00 0.00 0.00 4.61
2445 7287 1.138266 TGGACTAAGCTATTCGGGTGC 59.862 52.381 0.00 0.00 0.00 5.01
2446 7288 1.138266 GGACTAAGCTATTCGGGTGCA 59.862 52.381 0.00 0.00 0.00 4.57
2447 7289 2.224305 GGACTAAGCTATTCGGGTGCAT 60.224 50.000 0.00 0.00 0.00 3.96
2457 7299 2.570181 GGGTGCATGCAGTTCAGC 59.430 61.111 23.41 8.01 0.00 4.26
2470 7312 5.613329 TGCAGTTCAGCACATATATCATCA 58.387 37.500 0.00 0.00 40.11 3.07
2475 7317 6.933521 AGTTCAGCACATATATCATCAACTCC 59.066 38.462 0.00 0.00 0.00 3.85
2518 7361 5.216665 ACTCACTAAATACTACCCCTCCA 57.783 43.478 0.00 0.00 0.00 3.86
2543 7386 1.737793 CCCTGTGTTTCCGCAAGATAC 59.262 52.381 0.00 0.00 43.02 2.24
2578 7422 8.084073 TGTTTCAAAATTTCACTCAGATCCATC 58.916 33.333 0.00 0.00 0.00 3.51
2583 7427 6.998968 AATTTCACTCAGATCCATCAAGAC 57.001 37.500 0.00 0.00 0.00 3.01
2584 7428 4.478206 TTCACTCAGATCCATCAAGACC 57.522 45.455 0.00 0.00 0.00 3.85
2592 7436 6.586344 TCAGATCCATCAAGACCTAATCAAC 58.414 40.000 0.00 0.00 0.00 3.18
2715 7563 8.617290 AAGATAACAAGAAATCCAAGTAACGT 57.383 30.769 0.00 0.00 0.00 3.99
2720 7568 5.007332 ACAAGAAATCCAAGTAACGTGTGTC 59.993 40.000 0.00 0.00 0.00 3.67
2730 7578 4.185394 AGTAACGTGTGTCACAACAATCA 58.815 39.130 7.38 0.00 37.08 2.57
2742 7590 4.994217 TCACAACAATCATACGAAGCAAGA 59.006 37.500 0.00 0.00 0.00 3.02
2743 7591 5.643348 TCACAACAATCATACGAAGCAAGAT 59.357 36.000 0.00 0.00 0.00 2.40
2747 7595 8.765219 ACAACAATCATACGAAGCAAGATATAC 58.235 33.333 0.00 0.00 0.00 1.47
2775 7623 3.306166 CCTTCTTATACAGAAACACGGCG 59.694 47.826 4.80 4.80 41.25 6.46
2796 7644 0.321564 CATCAACTGACCCTTCGGCA 60.322 55.000 0.00 0.00 0.00 5.69
2799 7647 1.837439 TCAACTGACCCTTCGGCATAT 59.163 47.619 0.00 0.00 0.00 1.78
2848 7696 1.680735 ACTCAAATGAAACGCTGGCAA 59.319 42.857 0.00 0.00 0.00 4.52
2857 7705 1.388547 AACGCTGGCAAGAGAAAACA 58.611 45.000 0.00 0.00 0.00 2.83
2930 7778 1.187087 ACCTGTCATCGGGAGAAGTC 58.813 55.000 0.00 0.00 45.37 3.01
2941 7789 3.816480 TCGGGAGAAGTCAGATGGTACAA 60.816 47.826 0.00 0.00 37.88 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.260212 CGACTGTCCACTACAACAAGTTTG 60.260 45.833 1.55 0.00 37.74 2.93
26 27 0.728466 CGACGACTTTCCGACTGTCC 60.728 60.000 1.55 0.00 0.00 4.02
53 54 4.971125 GCGCTGATCCGGTAGGGC 62.971 72.222 21.58 21.58 43.90 5.19
77 78 6.809689 TGATTTATACTTTTCTTCGTCAGCGA 59.190 34.615 0.00 0.00 46.36 4.93
79 80 9.607285 TTTTGATTTATACTTTTCTTCGTCAGC 57.393 29.630 0.00 0.00 0.00 4.26
121 132 2.540101 GGATCCAGTCTTCGTTTATGCG 59.460 50.000 6.95 0.00 0.00 4.73
126 137 3.815401 CTGTTTGGATCCAGTCTTCGTTT 59.185 43.478 15.53 0.00 0.00 3.60
129 140 3.319137 TCTGTTTGGATCCAGTCTTCG 57.681 47.619 15.53 3.25 0.00 3.79
155 166 0.684535 TCAGTCGGCATTGGTCTTCA 59.315 50.000 0.00 0.00 0.00 3.02
164 175 1.153369 CGTGGGATTCAGTCGGCAT 60.153 57.895 0.00 0.00 0.00 4.40
166 177 2.100631 CACGTGGGATTCAGTCGGC 61.101 63.158 7.95 0.00 0.00 5.54
178 189 0.179161 GTCTCCGACAGATCACGTGG 60.179 60.000 17.00 1.33 32.08 4.94
179 190 0.521735 TGTCTCCGACAGATCACGTG 59.478 55.000 9.94 9.94 37.67 4.49
180 191 0.522180 GTGTCTCCGACAGATCACGT 59.478 55.000 0.00 0.00 43.57 4.49
181 192 0.521450 CGTGTCTCCGACAGATCACG 60.521 60.000 16.66 16.66 43.57 4.35
183 194 1.506718 GCGTGTCTCCGACAGATCA 59.493 57.895 0.00 0.00 43.57 2.92
187 198 1.444553 GAAGGCGTGTCTCCGACAG 60.445 63.158 0.00 0.00 43.57 3.51
239 250 3.846430 CCCCGACTAGCCCCGTTC 61.846 72.222 0.00 0.00 0.00 3.95
251 262 1.874129 TGGAATAAGCTTCTCCCCGA 58.126 50.000 19.81 4.20 0.00 5.14
253 264 4.141390 TGAAGATGGAATAAGCTTCTCCCC 60.141 45.833 19.81 13.55 38.03 4.81
262 273 3.749226 GCCTCCCTGAAGATGGAATAAG 58.251 50.000 0.00 0.00 0.00 1.73
268 279 2.203126 GCGCCTCCCTGAAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
285 296 4.052229 ACGAAGACGAGGCGGTGG 62.052 66.667 0.00 0.00 42.66 4.61
289 300 0.247735 CTACTCACGAAGACGAGGCG 60.248 60.000 0.00 0.00 42.66 5.52
312 323 8.185505 TGTTTTATGATTTCGTTTAGGGTATGC 58.814 33.333 0.00 0.00 0.00 3.14
315 326 7.884354 AGGTGTTTTATGATTTCGTTTAGGGTA 59.116 33.333 0.00 0.00 0.00 3.69
346 357 2.110006 GGAGGGATCCTGCTTCGC 59.890 66.667 12.58 0.00 38.98 4.70
349 360 2.003548 GGTGGGAGGGATCCTGCTT 61.004 63.158 12.58 0.00 41.86 3.91
350 361 2.367512 GGTGGGAGGGATCCTGCT 60.368 66.667 12.58 0.02 41.86 4.24
387 398 3.541713 CTAGGGTCTGGAGGCGCC 61.542 72.222 21.89 21.89 37.10 6.53
397 408 2.040606 TCTGGTGGCCCTAGGGTC 59.959 66.667 26.64 26.64 41.01 4.46
398 409 2.041265 CTCTGGTGGCCCTAGGGT 59.959 66.667 28.96 0.00 37.65 4.34
438 450 3.071206 GGCTCTGACTCCCGCAGA 61.071 66.667 0.00 0.00 39.90 4.26
548 561 4.184629 AGCTGAACTTAAGCGGTCATTAG 58.815 43.478 1.29 0.00 45.59 1.73
659 691 0.394565 GATCGAGGGAGGGTGAATGG 59.605 60.000 0.00 0.00 0.00 3.16
679 711 3.713288 TGCAGGATTAAGTTATCGACCG 58.287 45.455 0.00 0.00 0.00 4.79
686 718 5.991933 TGCCATTTTGCAGGATTAAGTTA 57.008 34.783 0.00 0.00 36.04 2.24
692 724 2.572556 TGGATTGCCATTTTGCAGGATT 59.427 40.909 0.00 0.00 43.21 3.01
721 753 1.912110 GCTCAAGCGAAGTGTAGTACG 59.088 52.381 0.00 0.00 0.00 3.67
756 788 1.153469 CTCCTCCAGCTTTCCTCGC 60.153 63.158 0.00 0.00 0.00 5.03
766 798 6.014669 CCTTTCCTTCAGATATACTCCTCCAG 60.015 46.154 0.00 0.00 0.00 3.86
771 803 7.453126 TGATCTCCTTTCCTTCAGATATACTCC 59.547 40.741 0.00 0.00 0.00 3.85
836 874 5.779922 ACAGTGACGAACAGCTAAATTAGA 58.220 37.500 3.88 0.00 0.00 2.10
838 876 6.480651 TGAAACAGTGACGAACAGCTAAATTA 59.519 34.615 0.00 0.00 0.00 1.40
852 890 1.529865 GCCCGTAAGTGAAACAGTGAC 59.470 52.381 0.00 0.00 41.43 3.67
858 896 1.632948 GAGCGGCCCGTAAGTGAAAC 61.633 60.000 4.45 0.00 0.00 2.78
905 943 2.343101 TGGCATCGTTTATATAGGCGC 58.657 47.619 0.00 0.00 0.00 6.53
979 1017 0.386113 GTGGAGCTCGATCTACCACC 59.614 60.000 18.98 5.92 43.29 4.61
1152 1190 4.720530 AGTTTACGTACCTTTGAAAGCG 57.279 40.909 0.00 0.71 0.00 4.68
1242 5978 0.883833 GACCTGACACAAGCCAATGG 59.116 55.000 0.00 0.00 0.00 3.16
1266 6002 3.303132 CGTTCTTACACTTGACAGCAACC 60.303 47.826 0.00 0.00 0.00 3.77
1287 6023 4.077184 TGGTACTCGCCCTTGCCG 62.077 66.667 0.00 0.00 0.00 5.69
1626 6362 0.744414 GGTCGTGGTCATGGTCATGG 60.744 60.000 10.61 0.00 39.24 3.66
1627 6363 0.036483 TGGTCGTGGTCATGGTCATG 60.036 55.000 4.67 4.67 40.09 3.07
1628 6364 0.911769 ATGGTCGTGGTCATGGTCAT 59.088 50.000 0.00 0.00 0.00 3.06
1629 6365 0.036483 CATGGTCGTGGTCATGGTCA 60.036 55.000 0.00 0.00 37.63 4.02
1630 6366 0.249120 TCATGGTCGTGGTCATGGTC 59.751 55.000 0.00 0.00 40.63 4.02
1631 6367 0.911769 ATCATGGTCGTGGTCATGGT 59.088 50.000 0.00 0.00 40.63 3.55
1632 6368 1.134431 TGATCATGGTCGTGGTCATGG 60.134 52.381 0.59 0.00 40.63 3.66
1633 6369 2.314323 TGATCATGGTCGTGGTCATG 57.686 50.000 0.59 0.00 41.35 3.07
1635 6371 1.830477 TCATGATCATGGTCGTGGTCA 59.170 47.619 30.54 9.48 42.92 4.02
1636 6372 2.205074 GTCATGATCATGGTCGTGGTC 58.795 52.381 30.54 15.56 39.24 4.02
1637 6373 1.134401 GGTCATGATCATGGTCGTGGT 60.134 52.381 30.54 0.00 39.24 4.16
1638 6374 1.134431 TGGTCATGATCATGGTCGTGG 60.134 52.381 30.54 8.08 39.24 4.94
1639 6375 2.314323 TGGTCATGATCATGGTCGTG 57.686 50.000 30.54 20.31 39.24 4.35
1640 6376 2.435437 TCATGGTCATGATCATGGTCGT 59.565 45.455 36.80 21.44 46.98 4.34
1641 6377 2.804527 GTCATGGTCATGATCATGGTCG 59.195 50.000 36.80 19.73 46.98 4.79
1642 6378 3.812262 TGTCATGGTCATGATCATGGTC 58.188 45.455 36.80 30.02 46.98 4.02
1643 6379 3.937778 TGTCATGGTCATGATCATGGT 57.062 42.857 36.80 11.51 46.98 3.55
1644 6380 3.002965 CGTTGTCATGGTCATGATCATGG 59.997 47.826 36.80 22.63 46.98 3.66
1650 6386 1.346068 TGGTCGTTGTCATGGTCATGA 59.654 47.619 9.35 9.35 44.83 3.07
1651 6387 1.807139 TGGTCGTTGTCATGGTCATG 58.193 50.000 4.67 4.67 40.09 3.07
1652 6388 2.027285 TCATGGTCGTTGTCATGGTCAT 60.027 45.455 0.00 0.00 40.63 3.06
1653 6389 1.346068 TCATGGTCGTTGTCATGGTCA 59.654 47.619 0.00 0.00 40.63 4.02
1654 6390 2.093306 TCATGGTCGTTGTCATGGTC 57.907 50.000 0.00 0.00 40.63 4.02
1655 6391 2.027285 TGATCATGGTCGTTGTCATGGT 60.027 45.455 0.59 0.00 40.63 3.55
1656 6392 2.352651 GTGATCATGGTCGTTGTCATGG 59.647 50.000 0.00 0.00 40.63 3.66
1657 6393 2.029606 CGTGATCATGGTCGTTGTCATG 59.970 50.000 7.06 0.00 41.35 3.07
1658 6394 2.094234 TCGTGATCATGGTCGTTGTCAT 60.094 45.455 14.91 0.00 0.00 3.06
1659 6395 1.271102 TCGTGATCATGGTCGTTGTCA 59.729 47.619 14.91 0.00 0.00 3.58
1660 6396 1.654105 GTCGTGATCATGGTCGTTGTC 59.346 52.381 14.91 0.00 0.00 3.18
1661 6397 1.671850 GGTCGTGATCATGGTCGTTGT 60.672 52.381 14.91 0.00 0.00 3.32
1662 6398 0.999406 GGTCGTGATCATGGTCGTTG 59.001 55.000 14.91 0.00 0.00 4.10
1663 6399 0.606096 TGGTCGTGATCATGGTCGTT 59.394 50.000 14.91 0.00 0.00 3.85
1664 6400 0.824109 ATGGTCGTGATCATGGTCGT 59.176 50.000 14.91 6.26 29.49 4.34
1665 6401 1.202405 TCATGGTCGTGATCATGGTCG 60.202 52.381 19.95 6.11 46.98 4.79
1666 6402 2.205074 GTCATGGTCGTGATCATGGTC 58.795 52.381 19.95 11.56 46.98 4.02
1667 6403 1.134401 GGTCATGGTCGTGATCATGGT 60.134 52.381 19.95 0.00 46.98 3.55
1668 6404 1.134431 TGGTCATGGTCGTGATCATGG 60.134 52.381 19.95 2.80 46.98 3.66
1674 6410 1.287815 GTCGTGGTCATGGTCGTGA 59.712 57.895 0.00 0.00 0.00 4.35
1677 6413 1.083806 CATGGTCGTGGTCATGGTCG 61.084 60.000 0.00 0.00 37.63 4.79
1707 6455 1.078497 GTGGCCATGGTCGTGATCA 60.078 57.895 9.72 0.00 0.00 2.92
1708 6456 2.173669 CGTGGCCATGGTCGTGATC 61.174 63.158 17.90 0.00 0.00 2.92
1709 6457 1.971505 ATCGTGGCCATGGTCGTGAT 61.972 55.000 24.78 14.22 0.00 3.06
1710 6458 2.572095 GATCGTGGCCATGGTCGTGA 62.572 60.000 22.27 12.38 0.00 4.35
1711 6459 2.125147 ATCGTGGCCATGGTCGTG 60.125 61.111 24.78 6.58 0.00 4.35
1712 6460 1.971505 ATGATCGTGGCCATGGTCGT 61.972 55.000 28.88 26.90 30.12 4.34
1713 6461 1.227645 ATGATCGTGGCCATGGTCG 60.228 57.895 28.88 18.97 30.12 4.79
1714 6462 0.179048 TCATGATCGTGGCCATGGTC 60.179 55.000 28.44 28.44 40.26 4.02
1715 6463 0.464373 GTCATGATCGTGGCCATGGT 60.464 55.000 24.78 19.07 40.26 3.55
1716 6464 1.168407 GGTCATGATCGTGGCCATGG 61.168 60.000 29.77 7.63 43.43 3.66
1717 6465 2.324215 GGTCATGATCGTGGCCATG 58.676 57.895 29.77 19.62 43.43 3.66
1718 6466 4.885426 GGTCATGATCGTGGCCAT 57.115 55.556 29.77 0.00 43.43 4.40
1720 6468 0.179048 TCATGGTCATGATCGTGGCC 60.179 55.000 28.42 28.42 42.42 5.36
1721 6469 3.384816 TCATGGTCATGATCGTGGC 57.615 52.632 24.62 13.13 42.42 5.01
2003 6754 2.887152 AGTGAGCAAAGGAGCGAAAAAT 59.113 40.909 0.00 0.00 40.15 1.82
2004 6755 2.033299 CAGTGAGCAAAGGAGCGAAAAA 59.967 45.455 0.00 0.00 40.15 1.94
2010 6761 1.731720 CTACCAGTGAGCAAAGGAGC 58.268 55.000 0.00 0.00 0.00 4.70
2022 6773 2.571216 AACGTCGCCTGCTACCAGT 61.571 57.895 0.00 0.00 37.38 4.00
2084 6835 1.734465 GTCCTCGCAATCCAGTTCAAG 59.266 52.381 0.00 0.00 0.00 3.02
2105 6857 6.147985 GGAACCTCTCAACTGAACTAACAATC 59.852 42.308 0.00 0.00 0.00 2.67
2117 6869 3.652869 TCCAGAAATGGAACCTCTCAACT 59.347 43.478 0.00 0.00 34.56 3.16
2152 6905 2.813061 ACACACAAAACAAGCAGATGC 58.187 42.857 0.00 0.00 42.49 3.91
2153 6906 4.626604 ACAAACACACAAAACAAGCAGATG 59.373 37.500 0.00 0.00 0.00 2.90
2154 6907 4.819769 ACAAACACACAAAACAAGCAGAT 58.180 34.783 0.00 0.00 0.00 2.90
2155 6908 4.250116 ACAAACACACAAAACAAGCAGA 57.750 36.364 0.00 0.00 0.00 4.26
2156 6909 4.988708 AACAAACACACAAAACAAGCAG 57.011 36.364 0.00 0.00 0.00 4.24
2200 6953 7.180079 CCAATCATATTTCGAACACACTGTAC 58.820 38.462 0.00 0.00 0.00 2.90
2204 6957 4.699735 TGCCAATCATATTTCGAACACACT 59.300 37.500 0.00 0.00 0.00 3.55
2207 6963 5.009010 AGGATGCCAATCATATTTCGAACAC 59.991 40.000 0.00 0.00 35.05 3.32
2212 6968 5.443185 AACAGGATGCCAATCATATTTCG 57.557 39.130 0.00 0.00 42.53 3.46
2280 7036 4.572909 TGCATCTCATATGTACCATCAGC 58.427 43.478 1.90 0.00 0.00 4.26
2327 7083 3.704061 TGTTAAGCAAGTTTTTCTGGGCT 59.296 39.130 0.00 0.00 38.62 5.19
2354 7110 1.306654 TGGGTGGTAGCCTGGTAGG 60.307 63.158 0.00 0.00 36.53 3.18
2355 7111 0.907704 TGTGGGTGGTAGCCTGGTAG 60.908 60.000 0.00 0.00 36.53 3.18
2356 7112 0.252974 ATGTGGGTGGTAGCCTGGTA 60.253 55.000 0.00 0.00 36.53 3.25
2404 7246 4.092383 CCAGAACCTTAAATTGTACGACCG 59.908 45.833 0.00 0.00 0.00 4.79
2406 7248 5.930569 AGTCCAGAACCTTAAATTGTACGAC 59.069 40.000 0.00 0.00 0.00 4.34
2414 7256 7.711339 CGAATAGCTTAGTCCAGAACCTTAAAT 59.289 37.037 0.00 0.00 0.00 1.40
2433 7275 1.097547 ACTGCATGCACCCGAATAGC 61.098 55.000 18.46 0.00 0.00 2.97
2440 7282 2.270257 TGCTGAACTGCATGCACCC 61.270 57.895 18.46 9.21 38.12 4.61
2441 7283 1.080974 GTGCTGAACTGCATGCACC 60.081 57.895 18.46 9.59 45.23 5.01
2442 7284 0.242825 ATGTGCTGAACTGCATGCAC 59.757 50.000 18.46 8.19 45.23 4.57
2443 7285 1.823797 TATGTGCTGAACTGCATGCA 58.176 45.000 21.29 21.29 45.23 3.96
2444 7286 4.214758 TGATATATGTGCTGAACTGCATGC 59.785 41.667 11.82 11.82 45.23 4.06
2445 7287 5.934935 TGATATATGTGCTGAACTGCATG 57.065 39.130 9.31 0.00 45.23 4.06
2446 7288 6.235664 TGATGATATATGTGCTGAACTGCAT 58.764 36.000 9.31 0.00 45.23 3.96
2447 7289 5.613329 TGATGATATATGTGCTGAACTGCA 58.387 37.500 2.46 2.46 41.05 4.41
2457 7299 8.031864 GGAGTACTGGAGTTGATGATATATGTG 58.968 40.741 0.00 0.00 0.00 3.21
2468 7310 2.891580 GACTGTGGAGTACTGGAGTTGA 59.108 50.000 0.00 0.00 30.16 3.18
2469 7311 2.028930 GGACTGTGGAGTACTGGAGTTG 60.029 54.545 0.00 0.00 30.16 3.16
2470 7312 2.249139 GGACTGTGGAGTACTGGAGTT 58.751 52.381 0.00 0.00 30.16 3.01
2475 7317 1.964223 AGTGTGGACTGTGGAGTACTG 59.036 52.381 0.00 0.00 33.58 2.74
2518 7361 0.178975 TGCGGAAACACAGGGGATTT 60.179 50.000 0.00 0.00 0.00 2.17
2543 7386 6.701400 AGTGAAATTTTGAAACAATCTTCCCG 59.299 34.615 0.00 0.00 0.00 5.14
2578 7422 6.090898 CGGTGAAGTTAGTTGATTAGGTCTTG 59.909 42.308 0.00 0.00 0.00 3.02
2583 7427 4.250464 TGCGGTGAAGTTAGTTGATTAGG 58.750 43.478 0.00 0.00 0.00 2.69
2584 7428 7.358435 CGATATGCGGTGAAGTTAGTTGATTAG 60.358 40.741 0.00 0.00 36.03 1.73
2689 7533 9.715121 ACGTTACTTGGATTTCTTGTTATCTTA 57.285 29.630 0.00 0.00 0.00 2.10
2691 7535 7.660208 ACACGTTACTTGGATTTCTTGTTATCT 59.340 33.333 0.00 0.00 0.00 1.98
2692 7536 7.744715 CACACGTTACTTGGATTTCTTGTTATC 59.255 37.037 0.00 0.00 0.00 1.75
2697 7541 5.007234 TGACACACGTTACTTGGATTTCTTG 59.993 40.000 0.00 0.00 0.00 3.02
2700 7544 4.271533 TGTGACACACGTTACTTGGATTTC 59.728 41.667 3.56 0.00 37.14 2.17
2701 7545 4.193090 TGTGACACACGTTACTTGGATTT 58.807 39.130 3.56 0.00 37.14 2.17
2704 7548 2.931325 GTTGTGACACACGTTACTTGGA 59.069 45.455 8.05 0.00 37.14 3.53
2705 7549 2.673862 TGTTGTGACACACGTTACTTGG 59.326 45.455 8.05 0.00 37.14 3.61
2713 7561 3.427193 TCGTATGATTGTTGTGACACACG 59.573 43.478 8.05 5.47 37.14 4.49
2714 7562 4.983215 TCGTATGATTGTTGTGACACAC 57.017 40.909 8.05 4.59 34.98 3.82
2715 7563 4.084066 GCTTCGTATGATTGTTGTGACACA 60.084 41.667 3.56 3.56 34.98 3.72
2720 7568 5.281693 TCTTGCTTCGTATGATTGTTGTG 57.718 39.130 0.00 0.00 0.00 3.33
2730 7578 7.272978 AGGTTTGTGTATATCTTGCTTCGTAT 58.727 34.615 0.00 0.00 0.00 3.06
2747 7595 7.069569 CGTGTTTCTGTATAAGAAGGTTTGTG 58.930 38.462 0.00 0.00 45.64 3.33
2769 7617 2.741985 TCAGTTGATGCCGCCGTG 60.742 61.111 0.00 0.00 0.00 4.94
2775 7623 2.471255 CGAAGGGTCAGTTGATGCC 58.529 57.895 0.00 0.00 0.00 4.40
2796 7644 6.127479 ACAATGTTTGTGGCCGTTCAATATAT 60.127 34.615 0.00 0.00 43.48 0.86
2799 7647 3.319405 ACAATGTTTGTGGCCGTTCAATA 59.681 39.130 0.00 0.00 43.48 1.90
2823 7671 3.243367 CCAGCGTTTCATTTGAGTTCCAA 60.243 43.478 0.00 0.00 0.00 3.53
2848 7696 6.268566 GTTTGCTGATTGTTCTGTTTTCTCT 58.731 36.000 0.00 0.00 0.00 3.10
2857 7705 4.586001 ACATTCAGGTTTGCTGATTGTTCT 59.414 37.500 0.00 0.00 40.36 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.