Multiple sequence alignment - TraesCS4A01G067600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G067600 chr4A 100.000 2662 0 0 1 2662 65775911 65778572 0.000000e+00 4916.0
1 TraesCS4A01G067600 chr4A 91.995 762 46 8 373 1124 510767648 510766892 0.000000e+00 1055.0
2 TraesCS4A01G067600 chr4A 96.226 371 14 0 2 372 327426225 327426595 2.270000e-170 608.0
3 TraesCS4A01G067600 chr4A 95.957 371 15 0 2 372 258814056 258813686 1.050000e-168 603.0
4 TraesCS4A01G067600 chr4A 95.957 371 14 1 2 372 142036899 142036530 3.790000e-168 601.0
5 TraesCS4A01G067600 chr2B 88.023 1219 106 17 1108 2296 359473746 359474954 0.000000e+00 1406.0
6 TraesCS4A01G067600 chr2B 90.239 963 75 5 1678 2640 489575641 489576584 0.000000e+00 1240.0
7 TraesCS4A01G067600 chr2B 90.012 851 68 9 373 1207 580473912 580473063 0.000000e+00 1085.0
8 TraesCS4A01G067600 chr2B 77.778 342 58 13 2309 2649 556555621 556555297 7.520000e-46 195.0
9 TraesCS4A01G067600 chr2B 83.099 213 13 5 2301 2491 772660087 772659876 3.520000e-39 172.0
10 TraesCS4A01G067600 chr6A 93.857 879 50 3 1771 2646 54816009 54815132 0.000000e+00 1321.0
11 TraesCS4A01G067600 chr6A 94.376 729 27 9 372 1090 137647911 137648635 0.000000e+00 1107.0
12 TraesCS4A01G067600 chr6A 78.036 387 61 8 1596 1970 219860095 219860469 3.450000e-54 222.0
13 TraesCS4A01G067600 chr6A 87.395 119 15 0 1571 1689 422948664 422948782 1.290000e-28 137.0
14 TraesCS4A01G067600 chr2A 91.264 973 65 6 1668 2640 357124436 357123484 0.000000e+00 1308.0
15 TraesCS4A01G067600 chr2A 91.146 960 66 6 1681 2640 155438454 155437514 0.000000e+00 1284.0
16 TraesCS4A01G067600 chr2A 90.871 964 68 6 1678 2640 624495713 624496657 0.000000e+00 1275.0
17 TraesCS4A01G067600 chr2A 84.648 710 82 15 1205 1901 542879847 542880542 0.000000e+00 682.0
18 TraesCS4A01G067600 chr2A 96.496 371 12 1 2 372 116111707 116112076 1.750000e-171 612.0
19 TraesCS4A01G067600 chr2A 96.226 371 14 0 2 372 51840695 51840325 2.270000e-170 608.0
20 TraesCS4A01G067600 chr7A 91.363 961 63 6 1681 2640 517430996 517430055 0.000000e+00 1297.0
21 TraesCS4A01G067600 chr7A 89.898 980 72 12 1681 2656 692242077 692241121 0.000000e+00 1236.0
22 TraesCS4A01G067600 chr7A 88.900 982 80 13 1681 2656 16182442 16181484 0.000000e+00 1182.0
23 TraesCS4A01G067600 chr7A 95.687 371 16 0 2 372 91166317 91165947 4.900000e-167 597.0
24 TraesCS4A01G067600 chr7A 95.687 371 16 0 2 372 174661947 174662317 4.900000e-167 597.0
25 TraesCS4A01G067600 chr3B 91.070 963 67 5 1678 2640 563185535 563186478 0.000000e+00 1284.0
26 TraesCS4A01G067600 chr3B 90.176 794 63 12 373 1157 642237121 642237908 0.000000e+00 1020.0
27 TraesCS4A01G067600 chr3B 82.085 307 39 7 2012 2306 124443426 124443124 5.690000e-62 248.0
28 TraesCS4A01G067600 chr1A 91.146 960 66 5 1681 2640 15232448 15231508 0.000000e+00 1284.0
29 TraesCS4A01G067600 chr1A 89.831 826 56 21 373 1180 483242150 483242965 0.000000e+00 1035.0
30 TraesCS4A01G067600 chr1A 90.286 700 61 2 1489 2182 240740778 240740080 0.000000e+00 909.0
31 TraesCS4A01G067600 chr1A 93.123 349 19 2 1111 1454 240741126 240740778 8.500000e-140 507.0
32 TraesCS4A01G067600 chr7B 90.010 961 76 6 1681 2640 696506131 696505190 0.000000e+00 1225.0
33 TraesCS4A01G067600 chr7B 90.400 125 12 0 2013 2137 354234050 354233926 5.900000e-37 165.0
34 TraesCS4A01G067600 chr5A 96.536 664 21 1 372 1033 26629477 26628814 0.000000e+00 1098.0
35 TraesCS4A01G067600 chr5A 95.957 371 14 1 2 372 47043113 47043482 3.790000e-168 601.0
36 TraesCS4A01G067600 chr5A 81.163 361 54 9 2309 2662 246059691 246060044 7.260000e-71 278.0
37 TraesCS4A01G067600 chr5A 77.747 364 69 11 2301 2661 399506542 399506188 2.080000e-51 213.0
38 TraesCS4A01G067600 chr5A 77.809 356 72 6 2301 2656 399544848 399544500 2.080000e-51 213.0
39 TraesCS4A01G067600 chr6B 90.311 805 63 14 373 1171 681306110 681305315 0.000000e+00 1040.0
40 TraesCS4A01G067600 chr6B 88.172 837 79 14 373 1196 549214145 549213316 0.000000e+00 979.0
41 TraesCS4A01G067600 chr6B 81.518 303 41 10 2012 2303 530660136 530660434 4.430000e-58 235.0
42 TraesCS4A01G067600 chr6B 83.099 213 13 5 2301 2491 703384834 703384623 3.520000e-39 172.0
43 TraesCS4A01G067600 chr6B 77.399 323 49 14 1707 2012 530659788 530660103 1.270000e-38 171.0
44 TraesCS4A01G067600 chr6B 87.395 119 15 0 1571 1689 13893858 13893976 1.290000e-28 137.0
45 TraesCS4A01G067600 chr5B 90.103 778 62 9 371 1136 702787629 702786855 0.000000e+00 996.0
46 TraesCS4A01G067600 chr6D 86.508 756 81 10 1208 1952 18294177 18294922 0.000000e+00 811.0
47 TraesCS4A01G067600 chr6D 83.224 304 34 7 2012 2303 460411212 460410914 2.030000e-66 263.0
48 TraesCS4A01G067600 chr6D 98.361 61 1 0 1951 2011 460411306 460411246 1.010000e-19 108.0
49 TraesCS4A01G067600 chr6D 96.610 59 2 0 1953 2011 417629470 417629412 6.060000e-17 99.0
50 TraesCS4A01G067600 chr3A 95.968 372 13 2 2 372 507352382 507352752 1.050000e-168 603.0
51 TraesCS4A01G067600 chr3D 90.561 392 31 3 2130 2515 569036363 569035972 5.080000e-142 514.0
52 TraesCS4A01G067600 chr3D 80.576 417 57 15 1566 1975 50839496 50839895 1.550000e-77 300.0
53 TraesCS4A01G067600 chr3D 79.952 419 66 13 1566 1975 291731317 291730908 2.590000e-75 292.0
54 TraesCS4A01G067600 chr3D 79.621 211 35 6 1747 1950 556911315 556911106 7.680000e-31 145.0
55 TraesCS4A01G067600 chrUn 89.943 348 17 4 1681 2028 346230856 346230527 1.460000e-117 433.0
56 TraesCS4A01G067600 chrUn 98.305 59 1 0 1953 2011 216480088 216480146 1.300000e-18 104.0
57 TraesCS4A01G067600 chrUn 100.000 28 0 0 1984 2011 216463955 216463982 5.000000e-03 52.8
58 TraesCS4A01G067600 chr1D 85.233 386 29 8 1571 1952 272484894 272485255 3.240000e-99 372.0
59 TraesCS4A01G067600 chr1D 89.531 277 27 2 2064 2339 400281865 400281590 1.520000e-92 350.0
60 TraesCS4A01G067600 chr1D 83.938 386 35 7 1571 1952 206788496 206788858 7.060000e-91 344.0
61 TraesCS4A01G067600 chr4B 83.108 296 35 6 2012 2296 635412599 635412308 3.400000e-64 255.0
62 TraesCS4A01G067600 chr4B 83.162 291 35 10 2012 2295 511897894 511898177 1.220000e-63 254.0
63 TraesCS4A01G067600 chr4B 86.555 119 16 0 1571 1689 104635532 104635414 5.980000e-27 132.0
64 TraesCS4A01G067600 chr4B 86.555 119 16 0 1571 1689 574652936 574653054 5.980000e-27 132.0
65 TraesCS4A01G067600 chr4B 95.349 43 2 0 1969 2011 635412675 635412633 4.750000e-08 69.4
66 TraesCS4A01G067600 chr2D 78.118 425 62 17 1565 1975 218726343 218725936 9.520000e-60 241.0
67 TraesCS4A01G067600 chr2D 84.052 232 13 2 1951 2182 38327327 38327534 4.490000e-48 202.0
68 TraesCS4A01G067600 chr2D 79.104 134 26 2 2524 2656 143641043 143640911 1.010000e-14 91.6
69 TraesCS4A01G067600 chr7D 82.661 248 33 5 1711 1952 228317394 228317637 7.470000e-51 211.0
70 TraesCS4A01G067600 chr1B 87.395 119 15 0 1571 1689 660301458 660301340 1.290000e-28 137.0
71 TraesCS4A01G067600 chr1B 79.167 96 20 0 2506 2601 90359078 90359173 1.710000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G067600 chr4A 65775911 65778572 2661 False 4916 4916 100.0000 1 2662 1 chr4A.!!$F1 2661
1 TraesCS4A01G067600 chr4A 510766892 510767648 756 True 1055 1055 91.9950 373 1124 1 chr4A.!!$R3 751
2 TraesCS4A01G067600 chr2B 359473746 359474954 1208 False 1406 1406 88.0230 1108 2296 1 chr2B.!!$F1 1188
3 TraesCS4A01G067600 chr2B 489575641 489576584 943 False 1240 1240 90.2390 1678 2640 1 chr2B.!!$F2 962
4 TraesCS4A01G067600 chr2B 580473063 580473912 849 True 1085 1085 90.0120 373 1207 1 chr2B.!!$R2 834
5 TraesCS4A01G067600 chr6A 54815132 54816009 877 True 1321 1321 93.8570 1771 2646 1 chr6A.!!$R1 875
6 TraesCS4A01G067600 chr6A 137647911 137648635 724 False 1107 1107 94.3760 372 1090 1 chr6A.!!$F1 718
7 TraesCS4A01G067600 chr2A 357123484 357124436 952 True 1308 1308 91.2640 1668 2640 1 chr2A.!!$R3 972
8 TraesCS4A01G067600 chr2A 155437514 155438454 940 True 1284 1284 91.1460 1681 2640 1 chr2A.!!$R2 959
9 TraesCS4A01G067600 chr2A 624495713 624496657 944 False 1275 1275 90.8710 1678 2640 1 chr2A.!!$F3 962
10 TraesCS4A01G067600 chr2A 542879847 542880542 695 False 682 682 84.6480 1205 1901 1 chr2A.!!$F2 696
11 TraesCS4A01G067600 chr7A 517430055 517430996 941 True 1297 1297 91.3630 1681 2640 1 chr7A.!!$R3 959
12 TraesCS4A01G067600 chr7A 692241121 692242077 956 True 1236 1236 89.8980 1681 2656 1 chr7A.!!$R4 975
13 TraesCS4A01G067600 chr7A 16181484 16182442 958 True 1182 1182 88.9000 1681 2656 1 chr7A.!!$R1 975
14 TraesCS4A01G067600 chr3B 563185535 563186478 943 False 1284 1284 91.0700 1678 2640 1 chr3B.!!$F1 962
15 TraesCS4A01G067600 chr3B 642237121 642237908 787 False 1020 1020 90.1760 373 1157 1 chr3B.!!$F2 784
16 TraesCS4A01G067600 chr1A 15231508 15232448 940 True 1284 1284 91.1460 1681 2640 1 chr1A.!!$R1 959
17 TraesCS4A01G067600 chr1A 483242150 483242965 815 False 1035 1035 89.8310 373 1180 1 chr1A.!!$F1 807
18 TraesCS4A01G067600 chr1A 240740080 240741126 1046 True 708 909 91.7045 1111 2182 2 chr1A.!!$R2 1071
19 TraesCS4A01G067600 chr7B 696505190 696506131 941 True 1225 1225 90.0100 1681 2640 1 chr7B.!!$R2 959
20 TraesCS4A01G067600 chr5A 26628814 26629477 663 True 1098 1098 96.5360 372 1033 1 chr5A.!!$R1 661
21 TraesCS4A01G067600 chr6B 681305315 681306110 795 True 1040 1040 90.3110 373 1171 1 chr6B.!!$R2 798
22 TraesCS4A01G067600 chr6B 549213316 549214145 829 True 979 979 88.1720 373 1196 1 chr6B.!!$R1 823
23 TraesCS4A01G067600 chr6B 530659788 530660434 646 False 203 235 79.4585 1707 2303 2 chr6B.!!$F2 596
24 TraesCS4A01G067600 chr5B 702786855 702787629 774 True 996 996 90.1030 371 1136 1 chr5B.!!$R1 765
25 TraesCS4A01G067600 chr6D 18294177 18294922 745 False 811 811 86.5080 1208 1952 1 chr6D.!!$F1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.035056 GTGGGGTCCAAGTCCATGAG 60.035 60.0 0.0 0.0 34.18 2.90 F
164 165 0.035056 GGGTCCAAGTCCATGAGGTG 60.035 60.0 0.0 0.0 35.89 4.00 F
218 219 0.102844 TCGTTCCGTTTTGACTCCGT 59.897 50.0 0.0 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 1223 1.094785 GTGTGTCCAAGCTTGTGTGT 58.905 50.0 24.35 0.0 0.0 3.72 R
1427 1461 1.457823 TTGCCTGCTCTTGTGCCTTG 61.458 55.0 0.00 0.0 0.0 3.61 R
2062 2165 1.532523 TGCATGCGATGGAAGTTTCA 58.467 45.0 14.09 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.584253 ATCCCGATCTAATATCCGTTCTG 57.416 43.478 0.00 0.00 0.00 3.02
23 24 3.762288 TCCCGATCTAATATCCGTTCTGG 59.238 47.826 0.00 0.00 40.09 3.86
34 35 2.176889 TCCGTTCTGGAAGTTCTAGGG 58.823 52.381 15.46 9.49 46.38 3.53
35 36 1.900486 CCGTTCTGGAAGTTCTAGGGT 59.100 52.381 15.46 0.00 42.00 4.34
36 37 3.094572 CCGTTCTGGAAGTTCTAGGGTA 58.905 50.000 15.46 0.40 42.00 3.69
37 38 3.705072 CCGTTCTGGAAGTTCTAGGGTAT 59.295 47.826 15.46 0.00 42.00 2.73
38 39 4.891756 CCGTTCTGGAAGTTCTAGGGTATA 59.108 45.833 15.46 0.00 42.00 1.47
39 40 5.539193 CCGTTCTGGAAGTTCTAGGGTATAT 59.461 44.000 15.46 0.00 42.00 0.86
40 41 6.448006 CGTTCTGGAAGTTCTAGGGTATATG 58.552 44.000 15.46 0.48 33.76 1.78
41 42 6.516860 CGTTCTGGAAGTTCTAGGGTATATGG 60.517 46.154 15.46 0.00 33.76 2.74
42 43 6.289482 TCTGGAAGTTCTAGGGTATATGGA 57.711 41.667 15.46 0.00 33.76 3.41
43 44 6.315714 TCTGGAAGTTCTAGGGTATATGGAG 58.684 44.000 15.46 0.00 33.76 3.86
44 45 6.039415 TGGAAGTTCTAGGGTATATGGAGT 57.961 41.667 2.25 0.00 0.00 3.85
45 46 6.449956 TGGAAGTTCTAGGGTATATGGAGTT 58.550 40.000 2.25 0.00 0.00 3.01
46 47 7.598248 TGGAAGTTCTAGGGTATATGGAGTTA 58.402 38.462 2.25 0.00 0.00 2.24
47 48 8.239478 TGGAAGTTCTAGGGTATATGGAGTTAT 58.761 37.037 2.25 0.00 0.00 1.89
48 49 9.765295 GGAAGTTCTAGGGTATATGGAGTTATA 57.235 37.037 2.25 0.00 0.00 0.98
55 56 9.504708 CTAGGGTATATGGAGTTATATAGGACG 57.495 40.741 0.00 0.00 0.00 4.79
56 57 8.110743 AGGGTATATGGAGTTATATAGGACGA 57.889 38.462 0.00 0.00 0.00 4.20
57 58 8.563502 AGGGTATATGGAGTTATATAGGACGAA 58.436 37.037 0.00 0.00 0.00 3.85
58 59 8.848182 GGGTATATGGAGTTATATAGGACGAAG 58.152 40.741 0.00 0.00 0.00 3.79
59 60 9.624373 GGTATATGGAGTTATATAGGACGAAGA 57.376 37.037 0.00 0.00 0.00 2.87
62 63 6.328641 TGGAGTTATATAGGACGAAGAAGC 57.671 41.667 0.00 0.00 0.00 3.86
63 64 5.831525 TGGAGTTATATAGGACGAAGAAGCA 59.168 40.000 0.00 0.00 0.00 3.91
64 65 6.151004 GGAGTTATATAGGACGAAGAAGCAC 58.849 44.000 0.00 0.00 0.00 4.40
65 66 5.759963 AGTTATATAGGACGAAGAAGCACG 58.240 41.667 0.00 0.00 0.00 5.34
66 67 5.298777 AGTTATATAGGACGAAGAAGCACGT 59.701 40.000 0.00 0.00 45.32 4.49
70 71 4.655527 ACGAAGAAGCACGTCAGG 57.344 55.556 0.00 0.00 38.34 3.86
71 72 1.006102 ACGAAGAAGCACGTCAGGG 60.006 57.895 0.00 0.00 38.34 4.45
72 73 1.738099 CGAAGAAGCACGTCAGGGG 60.738 63.158 0.00 0.00 0.00 4.79
73 74 1.671742 GAAGAAGCACGTCAGGGGA 59.328 57.895 0.00 0.00 0.00 4.81
74 75 0.390472 GAAGAAGCACGTCAGGGGAG 60.390 60.000 0.00 0.00 0.00 4.30
75 76 2.435059 GAAGCACGTCAGGGGAGC 60.435 66.667 0.00 0.00 0.00 4.70
76 77 3.959991 GAAGCACGTCAGGGGAGCC 62.960 68.421 0.00 0.00 0.00 4.70
79 80 4.742201 CACGTCAGGGGAGCCACG 62.742 72.222 0.00 0.00 38.24 4.94
80 81 4.988716 ACGTCAGGGGAGCCACGA 62.989 66.667 4.43 0.00 36.14 4.35
81 82 4.135153 CGTCAGGGGAGCCACGAG 62.135 72.222 0.00 0.00 34.06 4.18
82 83 3.775654 GTCAGGGGAGCCACGAGG 61.776 72.222 0.00 0.00 38.23 4.63
121 122 3.155167 GCCCCCTACCCTCGTGAG 61.155 72.222 0.00 0.00 0.00 3.51
122 123 3.155167 CCCCCTACCCTCGTGAGC 61.155 72.222 0.00 0.00 0.00 4.26
123 124 2.042843 CCCCTACCCTCGTGAGCT 60.043 66.667 0.00 0.00 0.00 4.09
124 125 2.128507 CCCCTACCCTCGTGAGCTC 61.129 68.421 6.82 6.82 0.00 4.09
125 126 2.128507 CCCTACCCTCGTGAGCTCC 61.129 68.421 12.15 1.40 0.00 4.70
126 127 1.076632 CCTACCCTCGTGAGCTCCT 60.077 63.158 12.15 0.00 0.00 3.69
127 128 1.104577 CCTACCCTCGTGAGCTCCTC 61.105 65.000 12.15 3.53 0.00 3.71
128 129 1.076923 TACCCTCGTGAGCTCCTCC 60.077 63.158 12.15 0.00 0.00 4.30
129 130 1.572689 TACCCTCGTGAGCTCCTCCT 61.573 60.000 12.15 0.00 0.00 3.69
130 131 1.684049 CCCTCGTGAGCTCCTCCTT 60.684 63.158 12.15 0.00 0.00 3.36
131 132 1.671901 CCCTCGTGAGCTCCTCCTTC 61.672 65.000 12.15 0.00 0.00 3.46
132 133 1.671901 CCTCGTGAGCTCCTCCTTCC 61.672 65.000 12.15 0.00 0.00 3.46
133 134 0.682855 CTCGTGAGCTCCTCCTTCCT 60.683 60.000 12.15 0.00 0.00 3.36
134 135 0.251832 TCGTGAGCTCCTCCTTCCTT 60.252 55.000 12.15 0.00 0.00 3.36
135 136 0.174617 CGTGAGCTCCTCCTTCCTTC 59.825 60.000 12.15 0.00 0.00 3.46
136 137 0.539518 GTGAGCTCCTCCTTCCTTCC 59.460 60.000 12.15 0.00 0.00 3.46
137 138 0.415429 TGAGCTCCTCCTTCCTTCCT 59.585 55.000 12.15 0.00 0.00 3.36
138 139 1.203364 TGAGCTCCTCCTTCCTTCCTT 60.203 52.381 12.15 0.00 0.00 3.36
139 140 1.209261 GAGCTCCTCCTTCCTTCCTTG 59.791 57.143 0.87 0.00 0.00 3.61
140 141 1.203364 AGCTCCTCCTTCCTTCCTTGA 60.203 52.381 0.00 0.00 0.00 3.02
141 142 1.065782 GCTCCTCCTTCCTTCCTTGAC 60.066 57.143 0.00 0.00 0.00 3.18
142 143 1.205893 CTCCTCCTTCCTTCCTTGACG 59.794 57.143 0.00 0.00 0.00 4.35
143 144 0.977395 CCTCCTTCCTTCCTTGACGT 59.023 55.000 0.00 0.00 0.00 4.34
144 145 1.338200 CCTCCTTCCTTCCTTGACGTG 60.338 57.143 0.00 0.00 0.00 4.49
145 146 0.685097 TCCTTCCTTCCTTGACGTGG 59.315 55.000 0.00 0.00 0.00 4.94
146 147 0.321653 CCTTCCTTCCTTGACGTGGG 60.322 60.000 0.00 0.00 0.00 4.61
147 148 0.321653 CTTCCTTCCTTGACGTGGGG 60.322 60.000 0.00 0.00 0.00 4.96
148 149 1.057851 TTCCTTCCTTGACGTGGGGT 61.058 55.000 0.00 0.00 0.00 4.95
149 150 1.003718 CCTTCCTTGACGTGGGGTC 60.004 63.158 0.00 0.00 46.27 4.46
150 151 1.003718 CTTCCTTGACGTGGGGTCC 60.004 63.158 0.00 0.00 45.46 4.46
151 152 1.764571 CTTCCTTGACGTGGGGTCCA 61.765 60.000 0.00 0.00 45.46 4.02
152 153 1.346479 TTCCTTGACGTGGGGTCCAA 61.346 55.000 0.00 0.00 45.46 3.53
153 154 1.302511 CCTTGACGTGGGGTCCAAG 60.303 63.158 0.00 0.00 45.46 3.61
157 158 2.446994 ACGTGGGGTCCAAGTCCA 60.447 61.111 0.00 0.00 42.09 4.02
158 159 1.846124 ACGTGGGGTCCAAGTCCAT 60.846 57.895 0.00 0.00 42.09 3.41
159 160 1.377202 CGTGGGGTCCAAGTCCATG 60.377 63.158 0.00 0.00 34.18 3.66
160 161 1.836999 CGTGGGGTCCAAGTCCATGA 61.837 60.000 0.00 0.00 39.30 3.07
161 162 0.035056 GTGGGGTCCAAGTCCATGAG 60.035 60.000 0.00 0.00 34.18 2.90
162 163 1.207488 TGGGGTCCAAGTCCATGAGG 61.207 60.000 0.00 0.00 0.00 3.86
163 164 1.208165 GGGGTCCAAGTCCATGAGGT 61.208 60.000 0.00 0.00 35.89 3.85
164 165 0.035056 GGGTCCAAGTCCATGAGGTG 60.035 60.000 0.00 0.00 35.89 4.00
172 173 4.722193 CCATGAGGTGGCTTTCGT 57.278 55.556 0.00 0.00 42.12 3.85
173 174 2.946947 CCATGAGGTGGCTTTCGTT 58.053 52.632 0.00 0.00 42.12 3.85
174 175 0.804989 CCATGAGGTGGCTTTCGTTC 59.195 55.000 0.00 0.00 42.12 3.95
175 176 0.804989 CATGAGGTGGCTTTCGTTCC 59.195 55.000 0.00 0.00 0.00 3.62
176 177 0.400213 ATGAGGTGGCTTTCGTTCCA 59.600 50.000 0.00 0.00 0.00 3.53
177 178 0.181587 TGAGGTGGCTTTCGTTCCAA 59.818 50.000 0.00 0.00 33.57 3.53
178 179 1.314730 GAGGTGGCTTTCGTTCCAAA 58.685 50.000 0.00 0.00 33.57 3.28
179 180 1.679153 GAGGTGGCTTTCGTTCCAAAA 59.321 47.619 0.00 0.00 33.57 2.44
180 181 2.100087 GAGGTGGCTTTCGTTCCAAAAA 59.900 45.455 0.00 0.00 33.57 1.94
181 182 2.698274 AGGTGGCTTTCGTTCCAAAAAT 59.302 40.909 0.00 0.00 33.57 1.82
182 183 3.892588 AGGTGGCTTTCGTTCCAAAAATA 59.107 39.130 0.00 0.00 33.57 1.40
183 184 4.342665 AGGTGGCTTTCGTTCCAAAAATAA 59.657 37.500 0.00 0.00 33.57 1.40
184 185 4.446385 GGTGGCTTTCGTTCCAAAAATAAC 59.554 41.667 0.00 0.00 33.57 1.89
185 186 5.286438 GTGGCTTTCGTTCCAAAAATAACT 58.714 37.500 0.00 0.00 33.57 2.24
186 187 5.751509 GTGGCTTTCGTTCCAAAAATAACTT 59.248 36.000 0.00 0.00 33.57 2.66
187 188 5.980715 TGGCTTTCGTTCCAAAAATAACTTC 59.019 36.000 0.00 0.00 0.00 3.01
188 189 6.183360 TGGCTTTCGTTCCAAAAATAACTTCT 60.183 34.615 0.00 0.00 0.00 2.85
189 190 6.362551 GGCTTTCGTTCCAAAAATAACTTCTC 59.637 38.462 0.00 0.00 0.00 2.87
190 191 7.139392 GCTTTCGTTCCAAAAATAACTTCTCT 58.861 34.615 0.00 0.00 0.00 3.10
191 192 8.287503 GCTTTCGTTCCAAAAATAACTTCTCTA 58.712 33.333 0.00 0.00 0.00 2.43
192 193 9.813080 CTTTCGTTCCAAAAATAACTTCTCTAG 57.187 33.333 0.00 0.00 0.00 2.43
193 194 8.897872 TTCGTTCCAAAAATAACTTCTCTAGT 57.102 30.769 0.00 0.00 39.32 2.57
195 196 8.770828 TCGTTCCAAAAATAACTTCTCTAGTTG 58.229 33.333 0.00 0.00 46.46 3.16
196 197 8.770828 CGTTCCAAAAATAACTTCTCTAGTTGA 58.229 33.333 0.00 0.00 46.46 3.18
205 206 8.705048 ATAACTTCTCTAGTTGATTTCGTTCC 57.295 34.615 0.00 0.00 46.46 3.62
206 207 5.162075 ACTTCTCTAGTTGATTTCGTTCCG 58.838 41.667 0.00 0.00 31.29 4.30
207 208 4.778534 TCTCTAGTTGATTTCGTTCCGT 57.221 40.909 0.00 0.00 0.00 4.69
208 209 5.130292 TCTCTAGTTGATTTCGTTCCGTT 57.870 39.130 0.00 0.00 0.00 4.44
209 210 5.535333 TCTCTAGTTGATTTCGTTCCGTTT 58.465 37.500 0.00 0.00 0.00 3.60
210 211 5.987347 TCTCTAGTTGATTTCGTTCCGTTTT 59.013 36.000 0.00 0.00 0.00 2.43
211 212 5.981174 TCTAGTTGATTTCGTTCCGTTTTG 58.019 37.500 0.00 0.00 0.00 2.44
212 213 4.886247 AGTTGATTTCGTTCCGTTTTGA 57.114 36.364 0.00 0.00 0.00 2.69
213 214 4.594136 AGTTGATTTCGTTCCGTTTTGAC 58.406 39.130 0.00 0.00 0.00 3.18
214 215 4.334481 AGTTGATTTCGTTCCGTTTTGACT 59.666 37.500 0.00 0.00 0.00 3.41
215 216 4.461992 TGATTTCGTTCCGTTTTGACTC 57.538 40.909 0.00 0.00 0.00 3.36
216 217 3.249080 TGATTTCGTTCCGTTTTGACTCC 59.751 43.478 0.00 0.00 0.00 3.85
217 218 1.210870 TTCGTTCCGTTTTGACTCCG 58.789 50.000 0.00 0.00 0.00 4.63
218 219 0.102844 TCGTTCCGTTTTGACTCCGT 59.897 50.000 0.00 0.00 0.00 4.69
219 220 0.505655 CGTTCCGTTTTGACTCCGTC 59.494 55.000 0.00 0.00 0.00 4.79
220 221 1.861971 GTTCCGTTTTGACTCCGTCT 58.138 50.000 0.00 0.00 33.15 4.18
221 222 1.525619 GTTCCGTTTTGACTCCGTCTG 59.474 52.381 0.00 0.00 33.15 3.51
222 223 1.034356 TCCGTTTTGACTCCGTCTGA 58.966 50.000 0.00 0.00 33.15 3.27
223 224 1.616865 TCCGTTTTGACTCCGTCTGAT 59.383 47.619 0.00 0.00 33.15 2.90
224 225 2.821378 TCCGTTTTGACTCCGTCTGATA 59.179 45.455 0.00 0.00 33.15 2.15
225 226 3.446161 TCCGTTTTGACTCCGTCTGATAT 59.554 43.478 0.00 0.00 33.15 1.63
226 227 4.081862 TCCGTTTTGACTCCGTCTGATATT 60.082 41.667 0.00 0.00 33.15 1.28
227 228 4.267928 CCGTTTTGACTCCGTCTGATATTC 59.732 45.833 0.00 0.00 33.15 1.75
228 229 4.267928 CGTTTTGACTCCGTCTGATATTCC 59.732 45.833 0.00 0.00 33.15 3.01
229 230 5.420409 GTTTTGACTCCGTCTGATATTCCT 58.580 41.667 0.00 0.00 33.15 3.36
230 231 5.677319 TTTGACTCCGTCTGATATTCCTT 57.323 39.130 0.00 0.00 33.15 3.36
231 232 5.677319 TTGACTCCGTCTGATATTCCTTT 57.323 39.130 0.00 0.00 33.15 3.11
232 233 5.677319 TGACTCCGTCTGATATTCCTTTT 57.323 39.130 0.00 0.00 33.15 2.27
233 234 5.661458 TGACTCCGTCTGATATTCCTTTTC 58.339 41.667 0.00 0.00 33.15 2.29
234 235 5.422331 TGACTCCGTCTGATATTCCTTTTCT 59.578 40.000 0.00 0.00 33.15 2.52
235 236 6.070767 TGACTCCGTCTGATATTCCTTTTCTT 60.071 38.462 0.00 0.00 33.15 2.52
236 237 6.342111 ACTCCGTCTGATATTCCTTTTCTTC 58.658 40.000 0.00 0.00 0.00 2.87
237 238 6.070767 ACTCCGTCTGATATTCCTTTTCTTCA 60.071 38.462 0.00 0.00 0.00 3.02
238 239 6.707290 TCCGTCTGATATTCCTTTTCTTCAA 58.293 36.000 0.00 0.00 0.00 2.69
239 240 7.165485 TCCGTCTGATATTCCTTTTCTTCAAA 58.835 34.615 0.00 0.00 0.00 2.69
240 241 7.663905 TCCGTCTGATATTCCTTTTCTTCAAAA 59.336 33.333 0.00 0.00 0.00 2.44
241 242 7.750903 CCGTCTGATATTCCTTTTCTTCAAAAC 59.249 37.037 0.00 0.00 0.00 2.43
242 243 8.289618 CGTCTGATATTCCTTTTCTTCAAAACA 58.710 33.333 0.00 0.00 0.00 2.83
243 244 9.399403 GTCTGATATTCCTTTTCTTCAAAACAC 57.601 33.333 0.00 0.00 0.00 3.32
244 245 9.354673 TCTGATATTCCTTTTCTTCAAAACACT 57.645 29.630 0.00 0.00 0.00 3.55
245 246 9.403110 CTGATATTCCTTTTCTTCAAAACACTG 57.597 33.333 0.00 0.00 0.00 3.66
246 247 9.130661 TGATATTCCTTTTCTTCAAAACACTGA 57.869 29.630 0.00 0.00 0.00 3.41
247 248 9.965824 GATATTCCTTTTCTTCAAAACACTGAA 57.034 29.630 0.00 0.00 34.22 3.02
251 252 9.801873 TTCCTTTTCTTCAAAACACTGAAATAG 57.198 29.630 0.00 0.00 34.96 1.73
252 253 8.413229 TCCTTTTCTTCAAAACACTGAAATAGG 58.587 33.333 0.00 0.00 34.96 2.57
253 254 7.169813 CCTTTTCTTCAAAACACTGAAATAGGC 59.830 37.037 0.00 0.00 34.96 3.93
254 255 6.707440 TTCTTCAAAACACTGAAATAGGCA 57.293 33.333 0.00 0.00 34.96 4.75
255 256 6.899393 TCTTCAAAACACTGAAATAGGCAT 57.101 33.333 0.00 0.00 34.96 4.40
256 257 7.994425 TCTTCAAAACACTGAAATAGGCATA 57.006 32.000 0.00 0.00 34.96 3.14
257 258 8.402798 TCTTCAAAACACTGAAATAGGCATAA 57.597 30.769 0.00 0.00 34.96 1.90
258 259 8.855110 TCTTCAAAACACTGAAATAGGCATAAA 58.145 29.630 0.00 0.00 34.96 1.40
259 260 9.474920 CTTCAAAACACTGAAATAGGCATAAAA 57.525 29.630 0.00 0.00 34.96 1.52
260 261 8.810652 TCAAAACACTGAAATAGGCATAAAAC 57.189 30.769 0.00 0.00 0.00 2.43
261 262 8.417106 TCAAAACACTGAAATAGGCATAAAACA 58.583 29.630 0.00 0.00 0.00 2.83
262 263 9.039870 CAAAACACTGAAATAGGCATAAAACAA 57.960 29.630 0.00 0.00 0.00 2.83
263 264 8.587952 AAACACTGAAATAGGCATAAAACAAC 57.412 30.769 0.00 0.00 0.00 3.32
264 265 7.283625 ACACTGAAATAGGCATAAAACAACA 57.716 32.000 0.00 0.00 0.00 3.33
265 266 7.721402 ACACTGAAATAGGCATAAAACAACAA 58.279 30.769 0.00 0.00 0.00 2.83
266 267 8.200792 ACACTGAAATAGGCATAAAACAACAAA 58.799 29.630 0.00 0.00 0.00 2.83
267 268 9.206870 CACTGAAATAGGCATAAAACAACAAAT 57.793 29.630 0.00 0.00 0.00 2.32
268 269 9.423061 ACTGAAATAGGCATAAAACAACAAATC 57.577 29.630 0.00 0.00 0.00 2.17
269 270 9.643693 CTGAAATAGGCATAAAACAACAAATCT 57.356 29.630 0.00 0.00 0.00 2.40
270 271 9.421806 TGAAATAGGCATAAAACAACAAATCTG 57.578 29.630 0.00 0.00 0.00 2.90
271 272 8.776376 AAATAGGCATAAAACAACAAATCTGG 57.224 30.769 0.00 0.00 0.00 3.86
272 273 5.151297 AGGCATAAAACAACAAATCTGGG 57.849 39.130 0.00 0.00 0.00 4.45
273 274 3.684305 GGCATAAAACAACAAATCTGGGC 59.316 43.478 0.00 0.00 0.00 5.36
274 275 4.563374 GGCATAAAACAACAAATCTGGGCT 60.563 41.667 0.00 0.00 0.00 5.19
275 276 4.389687 GCATAAAACAACAAATCTGGGCTG 59.610 41.667 0.00 0.00 0.00 4.85
276 277 3.473923 AAAACAACAAATCTGGGCTGG 57.526 42.857 0.00 0.00 0.00 4.85
277 278 1.341080 AACAACAAATCTGGGCTGGG 58.659 50.000 0.00 0.00 0.00 4.45
278 279 1.187567 ACAACAAATCTGGGCTGGGC 61.188 55.000 0.00 0.00 0.00 5.36
288 289 3.723922 GGCTGGGCCTCCGGTTAA 61.724 66.667 4.53 0.00 46.69 2.01
289 290 2.595655 GCTGGGCCTCCGGTTAAT 59.404 61.111 4.53 0.00 41.53 1.40
290 291 1.702022 GGCTGGGCCTCCGGTTAATA 61.702 60.000 4.53 0.00 46.69 0.98
291 292 0.250338 GCTGGGCCTCCGGTTAATAG 60.250 60.000 4.53 0.00 41.53 1.73
292 293 0.396811 CTGGGCCTCCGGTTAATAGG 59.603 60.000 4.53 0.51 34.69 2.57
293 294 0.326808 TGGGCCTCCGGTTAATAGGT 60.327 55.000 4.53 0.00 35.24 3.08
294 295 0.841961 GGGCCTCCGGTTAATAGGTT 59.158 55.000 0.84 0.00 32.67 3.50
295 296 2.049372 GGGCCTCCGGTTAATAGGTTA 58.951 52.381 0.84 0.00 32.67 2.85
296 297 2.038164 GGGCCTCCGGTTAATAGGTTAG 59.962 54.545 0.84 0.00 32.67 2.34
297 298 2.702478 GGCCTCCGGTTAATAGGTTAGT 59.298 50.000 0.00 0.00 32.67 2.24
298 299 3.244009 GGCCTCCGGTTAATAGGTTAGTC 60.244 52.174 0.00 0.00 32.67 2.59
299 300 3.244009 GCCTCCGGTTAATAGGTTAGTCC 60.244 52.174 0.00 0.00 32.67 3.85
300 301 3.323115 CCTCCGGTTAATAGGTTAGTCCC 59.677 52.174 0.00 0.00 36.75 4.46
301 302 2.958355 TCCGGTTAATAGGTTAGTCCCG 59.042 50.000 0.00 0.00 36.75 5.14
302 303 2.958355 CCGGTTAATAGGTTAGTCCCGA 59.042 50.000 0.00 0.00 36.75 5.14
303 304 3.384467 CCGGTTAATAGGTTAGTCCCGAA 59.616 47.826 0.00 0.00 36.75 4.30
304 305 4.141959 CCGGTTAATAGGTTAGTCCCGAAA 60.142 45.833 0.00 0.00 36.75 3.46
305 306 5.045872 CGGTTAATAGGTTAGTCCCGAAAG 58.954 45.833 0.00 0.00 36.75 2.62
306 307 5.394553 CGGTTAATAGGTTAGTCCCGAAAGT 60.395 44.000 0.00 0.00 36.75 2.66
307 308 6.183360 CGGTTAATAGGTTAGTCCCGAAAGTA 60.183 42.308 0.00 0.00 36.75 2.24
308 309 7.555965 GGTTAATAGGTTAGTCCCGAAAGTAA 58.444 38.462 0.00 0.00 36.75 2.24
309 310 8.206867 GGTTAATAGGTTAGTCCCGAAAGTAAT 58.793 37.037 0.00 0.00 36.75 1.89
316 317 9.828039 AGGTTAGTCCCGAAAGTAATATAAAAG 57.172 33.333 0.00 0.00 36.75 2.27
317 318 9.605275 GGTTAGTCCCGAAAGTAATATAAAAGT 57.395 33.333 0.00 0.00 0.00 2.66
319 320 9.603921 TTAGTCCCGAAAGTAATATAAAAGTGG 57.396 33.333 0.00 0.00 0.00 4.00
320 321 7.854337 AGTCCCGAAAGTAATATAAAAGTGGA 58.146 34.615 0.00 0.00 0.00 4.02
321 322 8.491958 AGTCCCGAAAGTAATATAAAAGTGGAT 58.508 33.333 0.00 0.00 0.00 3.41
322 323 9.768662 GTCCCGAAAGTAATATAAAAGTGGATA 57.231 33.333 0.00 0.00 0.00 2.59
339 340 7.232118 AGTGGATAATAAAGCCCAATATTGC 57.768 36.000 10.11 0.00 0.00 3.56
340 341 6.211384 AGTGGATAATAAAGCCCAATATTGCC 59.789 38.462 10.11 3.33 0.00 4.52
341 342 5.483583 TGGATAATAAAGCCCAATATTGCCC 59.516 40.000 10.11 2.98 0.00 5.36
342 343 5.483583 GGATAATAAAGCCCAATATTGCCCA 59.516 40.000 10.11 0.00 0.00 5.36
343 344 6.013812 GGATAATAAAGCCCAATATTGCCCAA 60.014 38.462 10.11 0.00 0.00 4.12
344 345 5.707066 AATAAAGCCCAATATTGCCCAAA 57.293 34.783 10.11 0.00 0.00 3.28
345 346 5.707066 ATAAAGCCCAATATTGCCCAAAA 57.293 34.783 10.11 0.00 0.00 2.44
346 347 3.348647 AAGCCCAATATTGCCCAAAAC 57.651 42.857 10.11 0.00 0.00 2.43
347 348 2.264455 AGCCCAATATTGCCCAAAACA 58.736 42.857 10.11 0.00 0.00 2.83
348 349 2.236893 AGCCCAATATTGCCCAAAACAG 59.763 45.455 10.11 0.00 0.00 3.16
349 350 2.027285 GCCCAATATTGCCCAAAACAGT 60.027 45.455 10.11 0.00 0.00 3.55
350 351 3.196685 GCCCAATATTGCCCAAAACAGTA 59.803 43.478 10.11 0.00 0.00 2.74
351 352 4.680440 GCCCAATATTGCCCAAAACAGTAG 60.680 45.833 10.11 0.00 0.00 2.57
352 353 4.709397 CCCAATATTGCCCAAAACAGTAGA 59.291 41.667 10.11 0.00 0.00 2.59
353 354 5.363580 CCCAATATTGCCCAAAACAGTAGAT 59.636 40.000 10.11 0.00 0.00 1.98
354 355 6.549364 CCCAATATTGCCCAAAACAGTAGATA 59.451 38.462 10.11 0.00 0.00 1.98
355 356 7.069331 CCCAATATTGCCCAAAACAGTAGATAA 59.931 37.037 10.11 0.00 0.00 1.75
356 357 8.641541 CCAATATTGCCCAAAACAGTAGATAAT 58.358 33.333 10.11 0.00 0.00 1.28
361 362 7.979444 TGCCCAAAACAGTAGATAATATAGC 57.021 36.000 0.00 0.00 0.00 2.97
362 363 7.513856 TGCCCAAAACAGTAGATAATATAGCA 58.486 34.615 0.00 0.00 0.00 3.49
363 364 8.163408 TGCCCAAAACAGTAGATAATATAGCAT 58.837 33.333 0.00 0.00 0.00 3.79
364 365 8.454106 GCCCAAAACAGTAGATAATATAGCATG 58.546 37.037 0.00 0.00 0.00 4.06
365 366 8.950210 CCCAAAACAGTAGATAATATAGCATGG 58.050 37.037 0.00 0.00 0.00 3.66
366 367 9.725019 CCAAAACAGTAGATAATATAGCATGGA 57.275 33.333 0.00 0.00 0.00 3.41
368 369 9.442047 AAAACAGTAGATAATATAGCATGGAGC 57.558 33.333 0.00 0.00 46.19 4.70
432 433 1.421646 CTAAAGGCCCTACCCATGGAG 59.578 57.143 15.22 5.95 40.58 3.86
689 690 2.029020 TGGCGCACTCTATATAAGCCAG 60.029 50.000 10.83 0.00 46.73 4.85
734 738 4.262851 GCTCTTTTCTTCCACCTCTCTCTT 60.263 45.833 0.00 0.00 0.00 2.85
880 893 3.081710 TGTTATCTCCACCGTGAGAGA 57.918 47.619 17.02 17.02 44.19 3.10
1128 1148 5.520376 ACAAACAAAAAGATCAGGGAGTG 57.480 39.130 0.00 0.00 0.00 3.51
1196 1223 6.952358 ACTACTGTTGGTTCCTCTTCTGTATA 59.048 38.462 0.00 0.00 0.00 1.47
1365 1398 2.283676 AACTCCTCCTTCCGGCGA 60.284 61.111 9.30 0.00 0.00 5.54
1427 1461 2.507324 GCCGACTCTCCGAGCAAC 60.507 66.667 0.00 0.00 32.04 4.17
1441 1475 0.752743 AGCAACAAGGCACAAGAGCA 60.753 50.000 0.00 0.00 35.83 4.26
1467 1501 0.250234 CAGGGCTTCATCCTCGTCAA 59.750 55.000 0.00 0.00 31.06 3.18
1570 1606 3.164269 ATAGCCCCCGACTGCAGG 61.164 66.667 19.93 0.10 0.00 4.85
1648 1684 4.752879 GCACCAACGCCGGAGCTA 62.753 66.667 5.05 0.00 39.33 3.32
1651 1687 2.058595 ACCAACGCCGGAGCTATCT 61.059 57.895 5.05 0.00 36.60 1.98
2062 2165 2.555199 GCATGCAGGAGATAAACGACT 58.445 47.619 14.21 0.00 0.00 4.18
2247 2376 2.993264 GGGTTCCTCGGTCCGACA 60.993 66.667 10.71 0.00 0.00 4.35
2444 2573 0.673985 CTCATCATTCGACCGCCCTA 59.326 55.000 0.00 0.00 0.00 3.53
2597 2726 3.467226 ATCATCCGAACGCCCCGT 61.467 61.111 0.00 0.00 43.97 5.28
2620 2749 3.767287 CGTCACTCTACAAGACGCA 57.233 52.632 0.00 0.00 46.74 5.24
2630 2759 5.358442 ACTCTACAAGACGCATCTACTTCAT 59.642 40.000 0.00 0.00 33.57 2.57
2633 2762 4.820897 ACAAGACGCATCTACTTCATTCA 58.179 39.130 0.00 0.00 33.57 2.57
2642 2771 3.114606 TCTACTTCATTCAGATGCCCCA 58.885 45.455 0.00 0.00 33.14 4.96
2653 2782 4.758251 TGCCCCACGCATCGTCAG 62.758 66.667 0.00 0.00 44.64 3.51
2655 2784 2.509336 CCCCACGCATCGTCAGTC 60.509 66.667 0.00 0.00 38.32 3.51
2656 2785 2.573869 CCCACGCATCGTCAGTCT 59.426 61.111 0.00 0.00 38.32 3.24
2658 2787 1.080501 CCACGCATCGTCAGTCTGT 60.081 57.895 0.00 0.00 38.32 3.41
2661 2790 1.807165 CGCATCGTCAGTCTGTGGG 60.807 63.158 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.762288 CCAGAACGGATATTAGATCGGGA 59.238 47.826 0.00 0.00 36.56 5.14
2 3 3.762288 TCCAGAACGGATATTAGATCGGG 59.238 47.826 0.00 3.04 39.64 5.14
3 4 5.047943 ACTTCCAGAACGGATATTAGATCGG 60.048 44.000 0.00 0.00 45.80 4.18
4 5 6.015027 ACTTCCAGAACGGATATTAGATCG 57.985 41.667 0.00 0.00 45.80 3.69
5 6 7.662897 AGAACTTCCAGAACGGATATTAGATC 58.337 38.462 0.00 0.00 45.80 2.75
6 7 7.604657 AGAACTTCCAGAACGGATATTAGAT 57.395 36.000 0.00 0.00 45.80 1.98
7 8 7.230913 CCTAGAACTTCCAGAACGGATATTAGA 59.769 40.741 0.00 0.00 45.80 2.10
9 10 6.267014 CCCTAGAACTTCCAGAACGGATATTA 59.733 42.308 0.00 0.00 45.80 0.98
10 11 5.070580 CCCTAGAACTTCCAGAACGGATATT 59.929 44.000 0.00 0.00 45.80 1.28
11 12 4.589374 CCCTAGAACTTCCAGAACGGATAT 59.411 45.833 0.00 0.00 45.80 1.63
12 13 3.958798 CCCTAGAACTTCCAGAACGGATA 59.041 47.826 0.00 0.00 45.80 2.59
13 14 2.766828 CCCTAGAACTTCCAGAACGGAT 59.233 50.000 0.00 0.00 45.80 4.18
14 15 2.176889 CCCTAGAACTTCCAGAACGGA 58.823 52.381 0.00 0.00 44.40 4.69
15 16 1.900486 ACCCTAGAACTTCCAGAACGG 59.100 52.381 0.00 0.00 0.00 4.44
16 17 6.448006 CATATACCCTAGAACTTCCAGAACG 58.552 44.000 0.00 0.00 0.00 3.95
17 18 6.553852 TCCATATACCCTAGAACTTCCAGAAC 59.446 42.308 0.00 0.00 0.00 3.01
18 19 6.689561 TCCATATACCCTAGAACTTCCAGAA 58.310 40.000 0.00 0.00 0.00 3.02
19 20 6.125860 ACTCCATATACCCTAGAACTTCCAGA 60.126 42.308 0.00 0.00 0.00 3.86
20 21 6.078664 ACTCCATATACCCTAGAACTTCCAG 58.921 44.000 0.00 0.00 0.00 3.86
21 22 6.039415 ACTCCATATACCCTAGAACTTCCA 57.961 41.667 0.00 0.00 0.00 3.53
22 23 6.997942 AACTCCATATACCCTAGAACTTCC 57.002 41.667 0.00 0.00 0.00 3.46
29 30 9.504708 CGTCCTATATAACTCCATATACCCTAG 57.495 40.741 0.00 0.00 0.00 3.02
30 31 9.229276 TCGTCCTATATAACTCCATATACCCTA 57.771 37.037 0.00 0.00 0.00 3.53
31 32 8.110743 TCGTCCTATATAACTCCATATACCCT 57.889 38.462 0.00 0.00 0.00 4.34
32 33 8.757982 TTCGTCCTATATAACTCCATATACCC 57.242 38.462 0.00 0.00 0.00 3.69
33 34 9.624373 TCTTCGTCCTATATAACTCCATATACC 57.376 37.037 0.00 0.00 0.00 2.73
36 37 8.688151 GCTTCTTCGTCCTATATAACTCCATAT 58.312 37.037 0.00 0.00 0.00 1.78
37 38 7.668469 TGCTTCTTCGTCCTATATAACTCCATA 59.332 37.037 0.00 0.00 0.00 2.74
38 39 6.493802 TGCTTCTTCGTCCTATATAACTCCAT 59.506 38.462 0.00 0.00 0.00 3.41
39 40 5.831525 TGCTTCTTCGTCCTATATAACTCCA 59.168 40.000 0.00 0.00 0.00 3.86
40 41 6.151004 GTGCTTCTTCGTCCTATATAACTCC 58.849 44.000 0.00 0.00 0.00 3.85
41 42 5.852229 CGTGCTTCTTCGTCCTATATAACTC 59.148 44.000 0.00 0.00 0.00 3.01
42 43 5.298777 ACGTGCTTCTTCGTCCTATATAACT 59.701 40.000 0.00 0.00 35.30 2.24
43 44 5.517904 ACGTGCTTCTTCGTCCTATATAAC 58.482 41.667 0.00 0.00 35.30 1.89
44 45 5.755813 GACGTGCTTCTTCGTCCTATATAA 58.244 41.667 0.00 0.00 46.83 0.98
45 46 5.354054 GACGTGCTTCTTCGTCCTATATA 57.646 43.478 0.00 0.00 46.83 0.86
46 47 4.226113 GACGTGCTTCTTCGTCCTATAT 57.774 45.455 0.00 0.00 46.83 0.86
47 48 3.687572 GACGTGCTTCTTCGTCCTATA 57.312 47.619 0.00 0.00 46.83 1.31
48 49 2.563471 GACGTGCTTCTTCGTCCTAT 57.437 50.000 0.00 0.00 46.83 2.57
50 51 4.968197 GACGTGCTTCTTCGTCCT 57.032 55.556 0.00 0.00 46.83 3.85
53 54 1.006102 CCCTGACGTGCTTCTTCGT 60.006 57.895 0.00 0.00 43.00 3.85
54 55 1.738099 CCCCTGACGTGCTTCTTCG 60.738 63.158 0.00 0.00 0.00 3.79
55 56 0.390472 CTCCCCTGACGTGCTTCTTC 60.390 60.000 0.00 0.00 0.00 2.87
56 57 1.674057 CTCCCCTGACGTGCTTCTT 59.326 57.895 0.00 0.00 0.00 2.52
57 58 2.948720 GCTCCCCTGACGTGCTTCT 61.949 63.158 0.00 0.00 0.00 2.85
58 59 2.435059 GCTCCCCTGACGTGCTTC 60.435 66.667 0.00 0.00 0.00 3.86
59 60 4.021925 GGCTCCCCTGACGTGCTT 62.022 66.667 0.00 0.00 0.00 3.91
62 63 4.742201 CGTGGCTCCCCTGACGTG 62.742 72.222 0.00 0.00 0.00 4.49
63 64 4.988716 TCGTGGCTCCCCTGACGT 62.989 66.667 0.00 0.00 33.58 4.34
64 65 4.135153 CTCGTGGCTCCCCTGACG 62.135 72.222 0.00 0.00 33.24 4.35
65 66 3.775654 CCTCGTGGCTCCCCTGAC 61.776 72.222 0.00 0.00 0.00 3.51
104 105 3.155167 CTCACGAGGGTAGGGGGC 61.155 72.222 0.00 0.00 0.00 5.80
105 106 3.155167 GCTCACGAGGGTAGGGGG 61.155 72.222 0.00 0.00 0.00 5.40
106 107 2.042843 AGCTCACGAGGGTAGGGG 60.043 66.667 0.00 0.00 0.00 4.79
107 108 2.128507 GGAGCTCACGAGGGTAGGG 61.129 68.421 17.19 0.00 0.00 3.53
108 109 1.076632 AGGAGCTCACGAGGGTAGG 60.077 63.158 17.19 0.00 0.00 3.18
109 110 1.104577 GGAGGAGCTCACGAGGGTAG 61.105 65.000 17.19 0.00 31.08 3.18
110 111 1.076923 GGAGGAGCTCACGAGGGTA 60.077 63.158 17.19 0.00 31.08 3.69
111 112 2.363147 GGAGGAGCTCACGAGGGT 60.363 66.667 17.19 0.00 31.08 4.34
112 113 1.671901 GAAGGAGGAGCTCACGAGGG 61.672 65.000 17.19 0.00 31.08 4.30
113 114 1.671901 GGAAGGAGGAGCTCACGAGG 61.672 65.000 17.19 0.00 31.08 4.63
114 115 0.682855 AGGAAGGAGGAGCTCACGAG 60.683 60.000 17.19 0.00 31.08 4.18
115 116 0.251832 AAGGAAGGAGGAGCTCACGA 60.252 55.000 17.19 0.00 31.08 4.35
116 117 0.174617 GAAGGAAGGAGGAGCTCACG 59.825 60.000 17.19 0.00 31.08 4.35
117 118 0.539518 GGAAGGAAGGAGGAGCTCAC 59.460 60.000 17.19 8.81 31.08 3.51
118 119 0.415429 AGGAAGGAAGGAGGAGCTCA 59.585 55.000 17.19 0.00 31.08 4.26
119 120 1.209261 CAAGGAAGGAAGGAGGAGCTC 59.791 57.143 4.71 4.71 0.00 4.09
120 121 1.203364 TCAAGGAAGGAAGGAGGAGCT 60.203 52.381 0.00 0.00 0.00 4.09
121 122 1.065782 GTCAAGGAAGGAAGGAGGAGC 60.066 57.143 0.00 0.00 0.00 4.70
122 123 1.205893 CGTCAAGGAAGGAAGGAGGAG 59.794 57.143 0.00 0.00 0.00 3.69
123 124 1.267121 CGTCAAGGAAGGAAGGAGGA 58.733 55.000 0.00 0.00 0.00 3.71
124 125 0.977395 ACGTCAAGGAAGGAAGGAGG 59.023 55.000 0.00 0.00 0.00 4.30
125 126 1.338200 CCACGTCAAGGAAGGAAGGAG 60.338 57.143 0.00 0.00 0.00 3.69
126 127 0.685097 CCACGTCAAGGAAGGAAGGA 59.315 55.000 0.00 0.00 0.00 3.36
127 128 0.321653 CCCACGTCAAGGAAGGAAGG 60.322 60.000 0.00 0.00 0.00 3.46
128 129 0.321653 CCCCACGTCAAGGAAGGAAG 60.322 60.000 0.00 0.00 0.00 3.46
129 130 1.057851 ACCCCACGTCAAGGAAGGAA 61.058 55.000 2.16 0.00 0.00 3.36
130 131 1.460689 ACCCCACGTCAAGGAAGGA 60.461 57.895 2.16 0.00 0.00 3.36
131 132 1.003718 GACCCCACGTCAAGGAAGG 60.004 63.158 2.16 0.00 41.54 3.46
132 133 1.003718 GGACCCCACGTCAAGGAAG 60.004 63.158 2.16 0.00 43.95 3.46
133 134 1.346479 TTGGACCCCACGTCAAGGAA 61.346 55.000 2.16 0.00 43.95 3.36
134 135 1.764571 CTTGGACCCCACGTCAAGGA 61.765 60.000 4.88 0.00 43.95 3.36
135 136 1.302511 CTTGGACCCCACGTCAAGG 60.303 63.158 4.88 0.00 43.95 3.61
136 137 1.450211 ACTTGGACCCCACGTCAAG 59.550 57.895 10.01 10.01 43.95 3.02
137 138 3.650023 ACTTGGACCCCACGTCAA 58.350 55.556 0.00 0.00 43.95 3.18
140 141 1.846124 ATGGACTTGGACCCCACGT 60.846 57.895 0.00 0.00 38.73 4.49
141 142 1.377202 CATGGACTTGGACCCCACG 60.377 63.158 0.00 0.00 30.78 4.94
142 143 0.035056 CTCATGGACTTGGACCCCAC 60.035 60.000 0.00 0.00 30.78 4.61
143 144 1.207488 CCTCATGGACTTGGACCCCA 61.207 60.000 0.00 0.00 34.57 4.96
144 145 1.208165 ACCTCATGGACTTGGACCCC 61.208 60.000 0.00 0.00 37.04 4.95
145 146 0.035056 CACCTCATGGACTTGGACCC 60.035 60.000 0.00 0.00 37.04 4.46
146 147 3.558674 CACCTCATGGACTTGGACC 57.441 57.895 0.00 0.00 37.04 4.46
156 157 0.804989 GGAACGAAAGCCACCTCATG 59.195 55.000 0.00 0.00 0.00 3.07
157 158 0.400213 TGGAACGAAAGCCACCTCAT 59.600 50.000 0.00 0.00 0.00 2.90
158 159 0.181587 TTGGAACGAAAGCCACCTCA 59.818 50.000 0.00 0.00 33.01 3.86
159 160 1.314730 TTTGGAACGAAAGCCACCTC 58.685 50.000 0.00 0.00 33.01 3.85
160 161 1.770294 TTTTGGAACGAAAGCCACCT 58.230 45.000 0.00 0.00 33.01 4.00
161 162 2.588027 TTTTTGGAACGAAAGCCACC 57.412 45.000 0.00 0.00 33.01 4.61
162 163 5.286438 AGTTATTTTTGGAACGAAAGCCAC 58.714 37.500 0.00 0.00 33.01 5.01
163 164 5.523438 AGTTATTTTTGGAACGAAAGCCA 57.477 34.783 0.00 0.00 0.00 4.75
164 165 6.213677 AGAAGTTATTTTTGGAACGAAAGCC 58.786 36.000 0.00 0.00 0.00 4.35
165 166 7.139392 AGAGAAGTTATTTTTGGAACGAAAGC 58.861 34.615 0.00 0.00 0.00 3.51
166 167 9.813080 CTAGAGAAGTTATTTTTGGAACGAAAG 57.187 33.333 0.00 0.00 0.00 2.62
167 168 9.333724 ACTAGAGAAGTTATTTTTGGAACGAAA 57.666 29.630 0.00 0.00 33.35 3.46
168 169 8.897872 ACTAGAGAAGTTATTTTTGGAACGAA 57.102 30.769 0.00 0.00 33.35 3.85
169 170 8.897872 AACTAGAGAAGTTATTTTTGGAACGA 57.102 30.769 0.00 0.00 46.85 3.85
213 214 6.341316 TGAAGAAAAGGAATATCAGACGGAG 58.659 40.000 0.00 0.00 0.00 4.63
214 215 6.294361 TGAAGAAAAGGAATATCAGACGGA 57.706 37.500 0.00 0.00 0.00 4.69
215 216 6.985188 TTGAAGAAAAGGAATATCAGACGG 57.015 37.500 0.00 0.00 0.00 4.79
216 217 8.289618 TGTTTTGAAGAAAAGGAATATCAGACG 58.710 33.333 0.00 0.00 31.57 4.18
217 218 9.399403 GTGTTTTGAAGAAAAGGAATATCAGAC 57.601 33.333 0.00 0.00 31.57 3.51
218 219 9.354673 AGTGTTTTGAAGAAAAGGAATATCAGA 57.645 29.630 0.00 0.00 31.57 3.27
219 220 9.403110 CAGTGTTTTGAAGAAAAGGAATATCAG 57.597 33.333 0.00 0.00 31.57 2.90
220 221 9.130661 TCAGTGTTTTGAAGAAAAGGAATATCA 57.869 29.630 0.00 0.00 31.57 2.15
221 222 9.965824 TTCAGTGTTTTGAAGAAAAGGAATATC 57.034 29.630 0.00 0.00 32.39 1.63
225 226 9.801873 CTATTTCAGTGTTTTGAAGAAAAGGAA 57.198 29.630 0.00 0.00 38.25 3.36
226 227 8.413229 CCTATTTCAGTGTTTTGAAGAAAAGGA 58.587 33.333 0.00 0.00 38.25 3.36
227 228 7.169813 GCCTATTTCAGTGTTTTGAAGAAAAGG 59.830 37.037 0.00 0.00 38.25 3.11
228 229 7.706179 TGCCTATTTCAGTGTTTTGAAGAAAAG 59.294 33.333 0.00 0.00 38.25 2.27
229 230 7.551585 TGCCTATTTCAGTGTTTTGAAGAAAA 58.448 30.769 0.00 0.00 38.25 2.29
230 231 7.106439 TGCCTATTTCAGTGTTTTGAAGAAA 57.894 32.000 0.00 0.00 38.25 2.52
231 232 6.707440 TGCCTATTTCAGTGTTTTGAAGAA 57.293 33.333 0.00 0.00 38.25 2.52
232 233 6.899393 ATGCCTATTTCAGTGTTTTGAAGA 57.101 33.333 0.00 0.00 38.25 2.87
233 234 9.474920 TTTTATGCCTATTTCAGTGTTTTGAAG 57.525 29.630 0.00 0.00 38.25 3.02
234 235 9.255304 GTTTTATGCCTATTTCAGTGTTTTGAA 57.745 29.630 0.00 0.00 35.38 2.69
235 236 8.417106 TGTTTTATGCCTATTTCAGTGTTTTGA 58.583 29.630 0.00 0.00 0.00 2.69
236 237 8.586570 TGTTTTATGCCTATTTCAGTGTTTTG 57.413 30.769 0.00 0.00 0.00 2.44
237 238 9.040939 GTTGTTTTATGCCTATTTCAGTGTTTT 57.959 29.630 0.00 0.00 0.00 2.43
238 239 8.200792 TGTTGTTTTATGCCTATTTCAGTGTTT 58.799 29.630 0.00 0.00 0.00 2.83
239 240 7.721402 TGTTGTTTTATGCCTATTTCAGTGTT 58.279 30.769 0.00 0.00 0.00 3.32
240 241 7.283625 TGTTGTTTTATGCCTATTTCAGTGT 57.716 32.000 0.00 0.00 0.00 3.55
241 242 8.586570 TTTGTTGTTTTATGCCTATTTCAGTG 57.413 30.769 0.00 0.00 0.00 3.66
242 243 9.423061 GATTTGTTGTTTTATGCCTATTTCAGT 57.577 29.630 0.00 0.00 0.00 3.41
243 244 9.643693 AGATTTGTTGTTTTATGCCTATTTCAG 57.356 29.630 0.00 0.00 0.00 3.02
244 245 9.421806 CAGATTTGTTGTTTTATGCCTATTTCA 57.578 29.630 0.00 0.00 0.00 2.69
245 246 8.872845 CCAGATTTGTTGTTTTATGCCTATTTC 58.127 33.333 0.00 0.00 0.00 2.17
246 247 7.823799 CCCAGATTTGTTGTTTTATGCCTATTT 59.176 33.333 0.00 0.00 0.00 1.40
247 248 7.330262 CCCAGATTTGTTGTTTTATGCCTATT 58.670 34.615 0.00 0.00 0.00 1.73
248 249 6.630188 GCCCAGATTTGTTGTTTTATGCCTAT 60.630 38.462 0.00 0.00 0.00 2.57
249 250 5.337169 GCCCAGATTTGTTGTTTTATGCCTA 60.337 40.000 0.00 0.00 0.00 3.93
250 251 4.563374 GCCCAGATTTGTTGTTTTATGCCT 60.563 41.667 0.00 0.00 0.00 4.75
251 252 3.684305 GCCCAGATTTGTTGTTTTATGCC 59.316 43.478 0.00 0.00 0.00 4.40
252 253 4.389687 CAGCCCAGATTTGTTGTTTTATGC 59.610 41.667 0.00 0.00 0.00 3.14
253 254 4.931002 CCAGCCCAGATTTGTTGTTTTATG 59.069 41.667 0.00 0.00 0.00 1.90
254 255 4.020307 CCCAGCCCAGATTTGTTGTTTTAT 60.020 41.667 0.00 0.00 0.00 1.40
255 256 3.323403 CCCAGCCCAGATTTGTTGTTTTA 59.677 43.478 0.00 0.00 0.00 1.52
256 257 2.104622 CCCAGCCCAGATTTGTTGTTTT 59.895 45.455 0.00 0.00 0.00 2.43
257 258 1.693606 CCCAGCCCAGATTTGTTGTTT 59.306 47.619 0.00 0.00 0.00 2.83
258 259 1.341080 CCCAGCCCAGATTTGTTGTT 58.659 50.000 0.00 0.00 0.00 2.83
259 260 1.187567 GCCCAGCCCAGATTTGTTGT 61.188 55.000 0.00 0.00 0.00 3.32
260 261 1.593265 GCCCAGCCCAGATTTGTTG 59.407 57.895 0.00 0.00 0.00 3.33
261 262 1.610379 GGCCCAGCCCAGATTTGTT 60.610 57.895 0.00 0.00 44.06 2.83
262 263 2.037847 GGCCCAGCCCAGATTTGT 59.962 61.111 0.00 0.00 44.06 2.83
276 277 6.309757 GGACTAACCTATTAACCGGAGGCC 62.310 54.167 9.46 0.00 44.44 5.19
277 278 3.244009 GGACTAACCTATTAACCGGAGGC 60.244 52.174 9.46 0.00 44.44 4.70
278 279 4.597404 GGACTAACCTATTAACCGGAGG 57.403 50.000 9.46 6.51 45.59 4.30
279 280 3.005155 CGGGACTAACCTATTAACCGGAG 59.995 52.174 9.46 0.00 38.98 4.63
280 281 2.958355 CGGGACTAACCTATTAACCGGA 59.042 50.000 9.46 0.00 38.98 5.14
281 282 2.958355 TCGGGACTAACCTATTAACCGG 59.042 50.000 0.00 0.00 38.98 5.28
282 283 4.654091 TTCGGGACTAACCTATTAACCG 57.346 45.455 0.00 0.00 38.98 4.44
283 284 5.982356 ACTTTCGGGACTAACCTATTAACC 58.018 41.667 0.00 0.00 38.98 2.85
290 291 9.828039 CTTTTATATTACTTTCGGGACTAACCT 57.172 33.333 0.00 0.00 38.98 3.50
291 292 9.605275 ACTTTTATATTACTTTCGGGACTAACC 57.395 33.333 0.00 0.00 38.08 2.85
293 294 9.603921 CCACTTTTATATTACTTTCGGGACTAA 57.396 33.333 0.00 0.00 0.00 2.24
294 295 8.980596 TCCACTTTTATATTACTTTCGGGACTA 58.019 33.333 0.00 0.00 0.00 2.59
295 296 7.854337 TCCACTTTTATATTACTTTCGGGACT 58.146 34.615 0.00 0.00 0.00 3.85
296 297 8.672823 ATCCACTTTTATATTACTTTCGGGAC 57.327 34.615 0.00 0.00 0.00 4.46
313 314 8.150296 GCAATATTGGGCTTTATTATCCACTTT 58.850 33.333 17.02 0.00 0.00 2.66
314 315 7.256296 GGCAATATTGGGCTTTATTATCCACTT 60.256 37.037 17.02 0.00 0.00 3.16
315 316 6.211384 GGCAATATTGGGCTTTATTATCCACT 59.789 38.462 17.02 0.00 0.00 4.00
316 317 6.398095 GGCAATATTGGGCTTTATTATCCAC 58.602 40.000 17.02 0.00 0.00 4.02
317 318 5.483583 GGGCAATATTGGGCTTTATTATCCA 59.516 40.000 17.02 0.00 0.00 3.41
318 319 5.483583 TGGGCAATATTGGGCTTTATTATCC 59.516 40.000 17.02 4.92 0.00 2.59
319 320 6.603940 TGGGCAATATTGGGCTTTATTATC 57.396 37.500 17.02 0.00 0.00 1.75
320 321 7.385894 TTTGGGCAATATTGGGCTTTATTAT 57.614 32.000 17.02 0.00 0.00 1.28
321 322 6.814954 TTTGGGCAATATTGGGCTTTATTA 57.185 33.333 17.02 0.00 0.00 0.98
322 323 5.707066 TTTGGGCAATATTGGGCTTTATT 57.293 34.783 17.02 0.00 0.00 1.40
323 324 5.045286 TGTTTTGGGCAATATTGGGCTTTAT 60.045 36.000 17.02 0.00 0.00 1.40
324 325 4.287067 TGTTTTGGGCAATATTGGGCTTTA 59.713 37.500 17.02 0.37 0.00 1.85
325 326 3.073650 TGTTTTGGGCAATATTGGGCTTT 59.926 39.130 17.02 0.00 0.00 3.51
326 327 2.641815 TGTTTTGGGCAATATTGGGCTT 59.358 40.909 17.02 0.00 0.00 4.35
327 328 2.236893 CTGTTTTGGGCAATATTGGGCT 59.763 45.455 17.02 0.00 0.00 5.19
328 329 2.027285 ACTGTTTTGGGCAATATTGGGC 60.027 45.455 17.02 9.68 0.00 5.36
329 330 3.979101 ACTGTTTTGGGCAATATTGGG 57.021 42.857 17.02 0.00 0.00 4.12
330 331 5.913137 TCTACTGTTTTGGGCAATATTGG 57.087 39.130 17.02 0.00 0.00 3.16
335 336 9.014297 GCTATATTATCTACTGTTTTGGGCAAT 57.986 33.333 0.00 0.00 0.00 3.56
336 337 7.996066 TGCTATATTATCTACTGTTTTGGGCAA 59.004 33.333 0.00 0.00 0.00 4.52
337 338 7.513856 TGCTATATTATCTACTGTTTTGGGCA 58.486 34.615 0.00 0.00 0.00 5.36
338 339 7.979444 TGCTATATTATCTACTGTTTTGGGC 57.021 36.000 0.00 0.00 0.00 5.36
339 340 8.950210 CCATGCTATATTATCTACTGTTTTGGG 58.050 37.037 0.00 0.00 0.00 4.12
340 341 9.725019 TCCATGCTATATTATCTACTGTTTTGG 57.275 33.333 0.00 0.00 0.00 3.28
342 343 9.442047 GCTCCATGCTATATTATCTACTGTTTT 57.558 33.333 0.00 0.00 38.95 2.43
343 344 8.597167 TGCTCCATGCTATATTATCTACTGTTT 58.403 33.333 0.00 0.00 43.37 2.83
344 345 8.138928 TGCTCCATGCTATATTATCTACTGTT 57.861 34.615 0.00 0.00 43.37 3.16
345 346 7.724490 TGCTCCATGCTATATTATCTACTGT 57.276 36.000 0.00 0.00 43.37 3.55
346 347 9.610705 AATTGCTCCATGCTATATTATCTACTG 57.389 33.333 0.00 0.00 43.37 2.74
347 348 9.610705 CAATTGCTCCATGCTATATTATCTACT 57.389 33.333 0.00 0.00 43.37 2.57
348 349 9.605275 TCAATTGCTCCATGCTATATTATCTAC 57.395 33.333 0.00 0.00 43.37 2.59
349 350 9.605275 GTCAATTGCTCCATGCTATATTATCTA 57.395 33.333 0.00 0.00 43.37 1.98
350 351 7.279536 CGTCAATTGCTCCATGCTATATTATCT 59.720 37.037 0.00 0.00 43.37 1.98
351 352 7.278646 TCGTCAATTGCTCCATGCTATATTATC 59.721 37.037 0.00 0.00 43.37 1.75
352 353 7.105588 TCGTCAATTGCTCCATGCTATATTAT 58.894 34.615 0.00 0.00 43.37 1.28
353 354 6.463360 TCGTCAATTGCTCCATGCTATATTA 58.537 36.000 0.00 0.00 43.37 0.98
354 355 5.308014 TCGTCAATTGCTCCATGCTATATT 58.692 37.500 0.00 0.00 43.37 1.28
355 356 4.898320 TCGTCAATTGCTCCATGCTATAT 58.102 39.130 0.00 0.00 43.37 0.86
356 357 4.309933 CTCGTCAATTGCTCCATGCTATA 58.690 43.478 0.00 0.00 43.37 1.31
357 358 3.136763 CTCGTCAATTGCTCCATGCTAT 58.863 45.455 0.00 0.00 43.37 2.97
358 359 2.554142 CTCGTCAATTGCTCCATGCTA 58.446 47.619 0.00 0.00 43.37 3.49
359 360 1.376543 CTCGTCAATTGCTCCATGCT 58.623 50.000 0.00 0.00 43.37 3.79
360 361 0.379669 CCTCGTCAATTGCTCCATGC 59.620 55.000 0.00 0.00 43.25 4.06
361 362 1.667724 GTCCTCGTCAATTGCTCCATG 59.332 52.381 0.00 0.00 0.00 3.66
362 363 1.278985 TGTCCTCGTCAATTGCTCCAT 59.721 47.619 0.00 0.00 0.00 3.41
363 364 0.684535 TGTCCTCGTCAATTGCTCCA 59.315 50.000 0.00 0.00 0.00 3.86
364 365 1.667724 CATGTCCTCGTCAATTGCTCC 59.332 52.381 0.00 0.00 0.00 4.70
365 366 2.350522 ACATGTCCTCGTCAATTGCTC 58.649 47.619 0.00 0.00 0.00 4.26
366 367 2.479566 ACATGTCCTCGTCAATTGCT 57.520 45.000 0.00 0.00 0.00 3.91
367 368 4.882671 AATACATGTCCTCGTCAATTGC 57.117 40.909 0.00 0.00 0.00 3.56
368 369 5.466728 CCCTAATACATGTCCTCGTCAATTG 59.533 44.000 0.00 0.00 0.00 2.32
369 370 5.454755 CCCCTAATACATGTCCTCGTCAATT 60.455 44.000 0.00 0.00 0.00 2.32
432 433 4.304939 GGCCCAGTACAAAGTATACGATC 58.695 47.826 0.00 0.00 0.00 3.69
689 690 1.049289 CCTAGTCTAGTGGTGGGGGC 61.049 65.000 6.15 0.00 0.00 5.80
734 738 7.201920 GCTATGTCCTGAGACTAATGGTTAGAA 60.202 40.741 3.89 0.00 43.91 2.10
880 893 0.393820 TGGTTTTAGCGAGTTCGGGT 59.606 50.000 3.50 0.00 40.23 5.28
1128 1148 3.936564 AGAGAACAAGTTGAGATGAGCC 58.063 45.455 10.54 0.00 0.00 4.70
1175 1202 5.869888 GTGTATACAGAAGAGGAACCAACAG 59.130 44.000 5.62 0.00 0.00 3.16
1196 1223 1.094785 GTGTGTCCAAGCTTGTGTGT 58.905 50.000 24.35 0.00 0.00 3.72
1365 1398 4.749310 CAGAAGCTGCGGCCGAGT 62.749 66.667 33.48 7.89 39.73 4.18
1425 1459 1.458639 GCCTGCTCTTGTGCCTTGTT 61.459 55.000 0.00 0.00 0.00 2.83
1427 1461 1.457823 TTGCCTGCTCTTGTGCCTTG 61.458 55.000 0.00 0.00 0.00 3.61
1570 1606 2.737376 GTTGACGAGGGACACCGC 60.737 66.667 0.00 0.00 43.47 5.68
1644 1680 4.709250 TGTGATCAGAGACGTAGATAGCT 58.291 43.478 0.00 0.00 0.00 3.32
1648 1684 5.358160 TCATGTTGTGATCAGAGACGTAGAT 59.642 40.000 0.00 0.00 0.00 1.98
1651 1687 4.671766 CGTCATGTTGTGATCAGAGACGTA 60.672 45.833 18.46 0.00 39.74 3.57
1732 1770 4.712425 CGGGTCGACGGCGTTCTT 62.712 66.667 16.19 0.00 38.98 2.52
1843 1882 4.017126 AGGAATTAAGAAAGGAAAGCGGG 58.983 43.478 0.00 0.00 0.00 6.13
2062 2165 1.532523 TGCATGCGATGGAAGTTTCA 58.467 45.000 14.09 0.00 0.00 2.69
2247 2376 0.608130 TCAGTGAGTGCTTGCCGTAT 59.392 50.000 0.00 0.00 0.00 3.06
2444 2573 4.280494 AGCTTCGTCACCGCGTGT 62.280 61.111 4.92 0.00 34.79 4.49
2597 2726 2.739292 GTCTTGTAGAGTGACGTTGCA 58.261 47.619 0.00 0.00 0.00 4.08
2613 2742 5.330455 TCTGAATGAAGTAGATGCGTCTT 57.670 39.130 14.93 0.00 35.87 3.01
2614 2743 4.991153 TCTGAATGAAGTAGATGCGTCT 57.009 40.909 14.07 14.07 38.52 4.18
2620 2749 3.718434 TGGGGCATCTGAATGAAGTAGAT 59.282 43.478 0.00 0.00 34.61 1.98
2642 2771 1.080501 CCACAGACTGACGATGCGT 60.081 57.895 10.08 0.00 45.10 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.