Multiple sequence alignment - TraesCS4A01G067300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G067300 chr4A 100.000 3623 0 0 1 3623 64955610 64959232 0.000000e+00 6691
1 TraesCS4A01G067300 chr4A 79.231 260 45 9 1114 1370 544047783 544047530 4.810000e-39 172
2 TraesCS4A01G067300 chr4B 92.179 3286 77 54 2 3216 470294856 470298032 0.000000e+00 4479
3 TraesCS4A01G067300 chr4B 96.379 359 10 1 3223 3581 470298074 470298429 4.030000e-164 588
4 TraesCS4A01G067300 chr4B 84.586 266 37 4 1114 1377 605693084 605692821 9.980000e-66 261
5 TraesCS4A01G067300 chr4B 79.231 260 45 9 1114 1370 77651299 77651552 4.810000e-39 172
6 TraesCS4A01G067300 chr4D 93.926 2338 45 20 886 3176 382737785 382740072 0.000000e+00 3441
7 TraesCS4A01G067300 chr4D 92.905 888 16 9 1 865 382736691 382737554 0.000000e+00 1247
8 TraesCS4A01G067300 chr4D 96.190 210 5 1 3221 3430 382740829 382741035 1.250000e-89 340
9 TraesCS4A01G067300 chr4D 94.375 160 6 1 3461 3620 382741903 382742059 3.610000e-60 243
10 TraesCS4A01G067300 chr4D 78.927 261 44 11 1114 1370 52763829 52764082 2.240000e-37 167
11 TraesCS4A01G067300 chr6D 84.962 266 36 4 1114 1377 462273014 462272751 2.140000e-67 267
12 TraesCS4A01G067300 chr6B 83.746 283 41 5 1098 1377 704751349 704751629 2.770000e-66 263
13 TraesCS4A01G067300 chr6A 83.688 282 43 3 1098 1377 609107564 609107284 2.770000e-66 263


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G067300 chr4A 64955610 64959232 3622 False 6691.00 6691 100.000 1 3623 1 chr4A.!!$F1 3622
1 TraesCS4A01G067300 chr4B 470294856 470298429 3573 False 2533.50 4479 94.279 2 3581 2 chr4B.!!$F2 3579
2 TraesCS4A01G067300 chr4D 382736691 382742059 5368 False 1317.75 3441 94.349 1 3620 4 chr4D.!!$F2 3619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 338 1.069596 TGCGAGTGAGTGCATGTGT 59.93 52.632 0.00 0.0 35.90 3.72 F
1470 1712 1.030457 CCTGCATGCCTCTTTGGATC 58.97 55.000 16.68 0.0 38.35 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 1825 0.540454 CTACCCTCCCCGGAAAAGAC 59.46 60.0 0.73 0.0 33.16 3.01 R
3182 4153 0.390340 TGAAGGCATCACAGTCGAGC 60.39 55.0 0.00 0.0 31.50 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 176 1.413382 CATCCATCTCGAACTAGCGC 58.587 55.000 0.00 0.00 0.00 5.92
287 311 3.595173 TCCATCTGTACGAACCAACATG 58.405 45.455 0.00 0.00 0.00 3.21
298 322 2.128771 ACCAACATGGGAGTGTATGC 57.871 50.000 0.00 0.00 43.37 3.14
313 337 3.955775 TGCGAGTGAGTGCATGTG 58.044 55.556 0.00 0.00 35.90 3.21
314 338 1.069596 TGCGAGTGAGTGCATGTGT 59.930 52.632 0.00 0.00 35.90 3.72
315 339 1.223417 TGCGAGTGAGTGCATGTGTG 61.223 55.000 0.00 0.00 35.90 3.82
316 340 1.224069 GCGAGTGAGTGCATGTGTGT 61.224 55.000 0.00 0.00 0.00 3.72
364 391 2.573340 GGTGCAAATTGGGCGAGG 59.427 61.111 0.00 0.00 0.00 4.63
365 392 2.573340 GTGCAAATTGGGCGAGGG 59.427 61.111 0.00 0.00 0.00 4.30
566 593 5.885912 TGGCTTTAAAGTCTCATCAATACCC 59.114 40.000 19.94 6.97 0.00 3.69
595 622 8.996988 AAACAAAAACTACACATACACATACG 57.003 30.769 0.00 0.00 0.00 3.06
642 669 2.159282 CGAGTAGGGAAAGTGTGCGTAT 60.159 50.000 0.00 0.00 0.00 3.06
643 670 3.065786 CGAGTAGGGAAAGTGTGCGTATA 59.934 47.826 0.00 0.00 0.00 1.47
644 671 4.261489 CGAGTAGGGAAAGTGTGCGTATAT 60.261 45.833 0.00 0.00 0.00 0.86
645 672 5.049198 CGAGTAGGGAAAGTGTGCGTATATA 60.049 44.000 0.00 0.00 0.00 0.86
646 673 6.349115 CGAGTAGGGAAAGTGTGCGTATATAT 60.349 42.308 0.00 0.00 0.00 0.86
647 674 7.148356 CGAGTAGGGAAAGTGTGCGTATATATA 60.148 40.741 0.00 0.00 0.00 0.86
848 879 1.826487 GACCCTCCTCTCCTCTCGC 60.826 68.421 0.00 0.00 0.00 5.03
850 881 2.520741 CCTCCTCTCCTCTCGCCC 60.521 72.222 0.00 0.00 0.00 6.13
851 882 2.600731 CTCCTCTCCTCTCGCCCT 59.399 66.667 0.00 0.00 0.00 5.19
852 883 1.528309 CTCCTCTCCTCTCGCCCTC 60.528 68.421 0.00 0.00 0.00 4.30
854 885 2.520741 CTCTCCTCTCGCCCTCCC 60.521 72.222 0.00 0.00 0.00 4.30
996 1238 1.442857 GGCCGATCGATCTAGCACG 60.443 63.158 27.94 14.82 0.00 5.34
1405 1647 6.505048 TCCATCCATCCATCCATCATATAC 57.495 41.667 0.00 0.00 0.00 1.47
1406 1648 5.370584 TCCATCCATCCATCCATCATATACC 59.629 44.000 0.00 0.00 0.00 2.73
1409 1651 5.299468 TCCATCCATCCATCATATACCCAT 58.701 41.667 0.00 0.00 0.00 4.00
1411 1653 5.303165 CATCCATCCATCATATACCCATCG 58.697 45.833 0.00 0.00 0.00 3.84
1470 1712 1.030457 CCTGCATGCCTCTTTGGATC 58.970 55.000 16.68 0.00 38.35 3.36
1599 1847 1.483827 CTTTTCCGGGGAGGGTAGTAC 59.516 57.143 0.00 0.00 41.52 2.73
1837 2085 2.278596 CCACCCGCAGATCGTACG 60.279 66.667 9.53 9.53 36.19 3.67
1888 2136 2.601763 GCGCGCATATATGTTAGTACCC 59.398 50.000 29.10 0.00 0.00 3.69
1889 2137 3.184541 CGCGCATATATGTTAGTACCCC 58.815 50.000 14.14 0.00 0.00 4.95
1890 2138 3.184541 GCGCATATATGTTAGTACCCCG 58.815 50.000 14.14 6.86 0.00 5.73
1891 2139 3.367703 GCGCATATATGTTAGTACCCCGT 60.368 47.826 14.14 0.00 0.00 5.28
1932 2180 0.615850 GAACAGGCCAAGGAGCTAGT 59.384 55.000 5.01 0.00 0.00 2.57
1933 2181 1.831736 GAACAGGCCAAGGAGCTAGTA 59.168 52.381 5.01 0.00 0.00 1.82
1934 2182 1.490574 ACAGGCCAAGGAGCTAGTAG 58.509 55.000 5.01 0.00 0.00 2.57
2012 2260 1.725164 GTTCTGGAAGTTCTAACCGCG 59.275 52.381 0.00 0.00 33.76 6.46
2013 2261 0.389426 TCTGGAAGTTCTAACCGCGC 60.389 55.000 0.00 0.00 33.76 6.86
2014 2262 1.683790 CTGGAAGTTCTAACCGCGCG 61.684 60.000 25.67 25.67 0.00 6.86
2015 2263 2.394524 GAAGTTCTAACCGCGCGC 59.605 61.111 27.36 23.91 0.00 6.86
2106 2354 6.052840 CATGTATGCATGTGGTTCTACTTC 57.947 41.667 14.98 0.00 45.48 3.01
2107 2355 5.420725 TGTATGCATGTGGTTCTACTTCT 57.579 39.130 10.16 0.00 0.00 2.85
2108 2356 6.538945 TGTATGCATGTGGTTCTACTTCTA 57.461 37.500 10.16 0.00 0.00 2.10
2109 2357 7.124573 TGTATGCATGTGGTTCTACTTCTAT 57.875 36.000 10.16 0.00 0.00 1.98
2110 2358 7.210174 TGTATGCATGTGGTTCTACTTCTATC 58.790 38.462 10.16 0.00 0.00 2.08
2111 2359 5.939764 TGCATGTGGTTCTACTTCTATCT 57.060 39.130 0.00 0.00 0.00 1.98
2112 2360 5.664457 TGCATGTGGTTCTACTTCTATCTG 58.336 41.667 0.00 0.00 0.00 2.90
2176 2424 7.588854 GCTTGTACTAATGCATGAATGTATGTG 59.411 37.037 0.00 0.00 33.33 3.21
2194 2450 2.106338 TGTGTGTGTCATGTCATTCCCT 59.894 45.455 0.00 0.00 0.00 4.20
2349 2605 1.296056 CGTCCACGACCAACATTCCC 61.296 60.000 0.00 0.00 43.02 3.97
2638 2894 3.519667 AGATGATCTCAATCCTCCCTCC 58.480 50.000 0.00 0.00 29.46 4.30
2639 2895 2.875102 TGATCTCAATCCTCCCTCCA 57.125 50.000 0.00 0.00 0.00 3.86
2640 2896 3.135161 TGATCTCAATCCTCCCTCCAA 57.865 47.619 0.00 0.00 0.00 3.53
2641 2897 3.673343 TGATCTCAATCCTCCCTCCAAT 58.327 45.455 0.00 0.00 0.00 3.16
2642 2898 3.649981 TGATCTCAATCCTCCCTCCAATC 59.350 47.826 0.00 0.00 0.00 2.67
2788 3057 0.400525 GGTGAGGGAGGGATGATGGA 60.401 60.000 0.00 0.00 0.00 3.41
2801 3072 1.078848 GATGGAGAGCAGCGTGGTT 60.079 57.895 0.00 0.00 0.00 3.67
2802 3073 1.078848 ATGGAGAGCAGCGTGGTTC 60.079 57.895 0.00 0.00 0.00 3.62
2803 3074 1.830587 ATGGAGAGCAGCGTGGTTCA 61.831 55.000 0.00 0.00 0.00 3.18
2804 3075 1.301716 GGAGAGCAGCGTGGTTCAA 60.302 57.895 0.00 0.00 0.00 2.69
3117 3405 0.040958 CGGCGATGCTTAATTCTGGC 60.041 55.000 0.00 0.00 0.00 4.85
3122 3410 3.185391 GCGATGCTTAATTCTGGCTACTC 59.815 47.826 0.00 0.00 0.00 2.59
3123 3411 3.743396 CGATGCTTAATTCTGGCTACTCC 59.257 47.826 0.00 0.00 0.00 3.85
3136 3424 1.731720 CTACTCCAGCAGCTGTTTCC 58.268 55.000 21.26 0.00 0.00 3.13
3154 3442 0.029300 CCACGCATTTATGGCCTTCG 59.971 55.000 3.32 0.00 0.00 3.79
3176 3464 3.433274 GCTAAATTGGTTTTGCAGCTTCC 59.567 43.478 0.00 0.00 42.87 3.46
3182 4153 0.179189 GTTTTGCAGCTTCCGATCGG 60.179 55.000 28.62 28.62 0.00 4.18
3195 4166 2.878743 GATCGGCTCGACTGTGATG 58.121 57.895 0.00 0.00 39.18 3.07
3196 4167 1.211818 GATCGGCTCGACTGTGATGC 61.212 60.000 0.00 0.00 39.18 3.91
3197 4168 2.635229 ATCGGCTCGACTGTGATGCC 62.635 60.000 0.00 0.00 39.18 4.40
3211 4183 7.967854 CGACTGTGATGCCTTCATTTTATTTTA 59.032 33.333 0.00 0.00 36.54 1.52
3212 4184 9.807649 GACTGTGATGCCTTCATTTTATTTTAT 57.192 29.630 0.00 0.00 36.54 1.40
3243 4251 9.424659 CTTGTTCTTGCATTTGTTTATTTGTTC 57.575 29.630 0.00 0.00 0.00 3.18
3244 4252 8.715191 TGTTCTTGCATTTGTTTATTTGTTCT 57.285 26.923 0.00 0.00 0.00 3.01
3245 4253 9.160496 TGTTCTTGCATTTGTTTATTTGTTCTT 57.840 25.926 0.00 0.00 0.00 2.52
3252 4260 5.957910 TTGTTTATTTGTTCTTGTTGCGG 57.042 34.783 0.00 0.00 0.00 5.69
3366 4374 2.357517 GCTACATGATCGGGCCCG 60.358 66.667 39.13 39.13 41.35 6.13
3531 5376 0.738412 GTATCGTGGTGTCGGTTGGG 60.738 60.000 0.00 0.00 0.00 4.12
3581 5426 8.812513 TGAACATGGATCATGATTCTTAACTT 57.187 30.769 15.17 1.87 43.81 2.66
3583 5428 8.585471 AACATGGATCATGATTCTTAACTTGT 57.415 30.769 15.17 10.00 43.81 3.16
3584 5429 9.685276 AACATGGATCATGATTCTTAACTTGTA 57.315 29.630 15.17 0.00 43.81 2.41
3585 5430 9.113838 ACATGGATCATGATTCTTAACTTGTAC 57.886 33.333 15.17 0.00 43.81 2.90
3610 5455 5.655488 AGCGCGCTGATAATCTAGATAATT 58.345 37.500 36.13 0.88 0.00 1.40
3612 5457 6.591834 AGCGCGCTGATAATCTAGATAATTTT 59.408 34.615 36.13 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 45 0.318762 GGTGATCCATCGGGCTAGTC 59.681 60.000 0.00 0.00 0.00 2.59
47 57 5.359860 CCTTTTGTTTATGGGTAGGTGATCC 59.640 44.000 0.00 0.00 0.00 3.36
287 311 0.818296 ACTCACTCGCATACACTCCC 59.182 55.000 0.00 0.00 0.00 4.30
298 322 0.509929 CACACACATGCACTCACTCG 59.490 55.000 0.00 0.00 0.00 4.18
313 337 1.080298 TCCGTCACACAAACACACAC 58.920 50.000 0.00 0.00 0.00 3.82
314 338 2.031258 ATCCGTCACACAAACACACA 57.969 45.000 0.00 0.00 0.00 3.72
315 339 3.386486 TCTATCCGTCACACAAACACAC 58.614 45.455 0.00 0.00 0.00 3.82
316 340 3.737032 TCTATCCGTCACACAAACACA 57.263 42.857 0.00 0.00 0.00 3.72
566 593 8.467402 TGTGTATGTGTAGTTTTTGTTTTTGG 57.533 30.769 0.00 0.00 0.00 3.28
595 622 4.692625 CCACTGCTGGACTAACATATATGC 59.307 45.833 12.79 0.00 40.55 3.14
645 672 8.871125 TCTCTCATGCATGCATATCTCATATAT 58.129 33.333 31.73 4.38 34.91 0.86
646 673 8.246430 TCTCTCATGCATGCATATCTCATATA 57.754 34.615 31.73 9.50 34.91 0.86
647 674 7.070074 TCTCTCTCATGCATGCATATCTCATAT 59.930 37.037 31.73 5.79 34.91 1.78
659 686 2.897436 TCGGTTTCTCTCTCATGCATG 58.103 47.619 21.07 21.07 0.00 4.06
686 716 1.423921 ACAGTTCCACCCCGATTTCTT 59.576 47.619 0.00 0.00 0.00 2.52
688 718 2.745821 GTTACAGTTCCACCCCGATTTC 59.254 50.000 0.00 0.00 0.00 2.17
854 885 1.689892 GGTAAGTCTGGAGAGAGGGGG 60.690 61.905 0.00 0.00 0.00 5.40
867 927 1.005867 TCGCCGGTGTTGGTAAGTC 60.006 57.895 16.01 0.00 0.00 3.01
1242 1484 1.221293 CTGGAGGAGCAGCTTGGAG 59.779 63.158 0.00 0.00 0.00 3.86
1411 1653 4.613448 CACGGAGATTTAACTCGATCGATC 59.387 45.833 19.78 15.68 37.74 3.69
1577 1825 0.540454 CTACCCTCCCCGGAAAAGAC 59.460 60.000 0.73 0.00 33.16 3.01
1614 1862 1.197721 AGAAAGAAGAAACGCGGCATG 59.802 47.619 12.47 0.00 0.00 4.06
1932 2180 4.882427 CAGATCGAGAACCAAGGACTACTA 59.118 45.833 0.00 0.00 0.00 1.82
1933 2181 3.697045 CAGATCGAGAACCAAGGACTACT 59.303 47.826 0.00 0.00 0.00 2.57
1934 2182 3.695060 TCAGATCGAGAACCAAGGACTAC 59.305 47.826 0.00 0.00 0.00 2.73
2012 2260 1.179174 AACAAAAGAGAAGGGGGCGC 61.179 55.000 0.00 0.00 0.00 6.53
2013 2261 1.269723 GAAACAAAAGAGAAGGGGGCG 59.730 52.381 0.00 0.00 0.00 6.13
2014 2262 2.598565 AGAAACAAAAGAGAAGGGGGC 58.401 47.619 0.00 0.00 0.00 5.80
2015 2263 4.762251 CACTAGAAACAAAAGAGAAGGGGG 59.238 45.833 0.00 0.00 0.00 5.40
2088 2336 6.126940 ACAGATAGAAGTAGAACCACATGCAT 60.127 38.462 0.00 0.00 0.00 3.96
2089 2337 5.187772 ACAGATAGAAGTAGAACCACATGCA 59.812 40.000 0.00 0.00 0.00 3.96
2090 2338 5.665459 ACAGATAGAAGTAGAACCACATGC 58.335 41.667 0.00 0.00 0.00 4.06
2091 2339 7.323420 TGAACAGATAGAAGTAGAACCACATG 58.677 38.462 0.00 0.00 0.00 3.21
2092 2340 7.482169 TGAACAGATAGAAGTAGAACCACAT 57.518 36.000 0.00 0.00 0.00 3.21
2094 2342 7.276658 CACATGAACAGATAGAAGTAGAACCAC 59.723 40.741 0.00 0.00 0.00 4.16
2096 2344 7.324178 ACACATGAACAGATAGAAGTAGAACC 58.676 38.462 0.00 0.00 0.00 3.62
2100 2348 9.676195 CTCATACACATGAACAGATAGAAGTAG 57.324 37.037 0.00 0.00 40.66 2.57
2101 2349 9.190317 ACTCATACACATGAACAGATAGAAGTA 57.810 33.333 0.00 0.00 40.66 2.24
2105 2353 8.507249 CGATACTCATACACATGAACAGATAGA 58.493 37.037 0.00 0.00 40.66 1.98
2106 2354 8.293157 ACGATACTCATACACATGAACAGATAG 58.707 37.037 0.00 0.00 40.66 2.08
2107 2355 8.166422 ACGATACTCATACACATGAACAGATA 57.834 34.615 0.00 0.00 40.66 1.98
2108 2356 7.043961 ACGATACTCATACACATGAACAGAT 57.956 36.000 0.00 0.00 40.66 2.90
2109 2357 6.451064 ACGATACTCATACACATGAACAGA 57.549 37.500 0.00 0.00 40.66 3.41
2110 2358 6.531594 ACAACGATACTCATACACATGAACAG 59.468 38.462 0.00 0.00 40.66 3.16
2111 2359 6.310224 CACAACGATACTCATACACATGAACA 59.690 38.462 0.00 0.00 40.66 3.18
2112 2360 6.310467 ACACAACGATACTCATACACATGAAC 59.690 38.462 0.00 0.00 40.66 3.18
2123 2371 2.626266 ACCAGTCACACAACGATACTCA 59.374 45.455 0.00 0.00 0.00 3.41
2176 2424 3.055094 ACCTAGGGAATGACATGACACAC 60.055 47.826 14.81 0.00 0.00 3.82
2194 2450 1.204146 GCCTGGAGATTCACCACCTA 58.796 55.000 0.00 0.00 33.57 3.08
2349 2605 1.079127 GGACAGGTCGATGGTGGTG 60.079 63.158 0.00 0.00 0.00 4.17
2749 3018 2.237392 CCGATCCCAATAATCCCTCTCC 59.763 54.545 0.00 0.00 0.00 3.71
2788 3057 1.016130 CGATTGAACCACGCTGCTCT 61.016 55.000 0.00 0.00 0.00 4.09
2801 3072 5.297278 GCTTCTCTTCTACCTACTCGATTGA 59.703 44.000 0.00 0.00 0.00 2.57
2802 3073 5.066634 TGCTTCTCTTCTACCTACTCGATTG 59.933 44.000 0.00 0.00 0.00 2.67
2803 3074 5.194432 TGCTTCTCTTCTACCTACTCGATT 58.806 41.667 0.00 0.00 0.00 3.34
2804 3075 4.783055 TGCTTCTCTTCTACCTACTCGAT 58.217 43.478 0.00 0.00 0.00 3.59
2898 3169 7.294017 AGCCAAATCAAATGTAGAATATGGG 57.706 36.000 0.00 0.00 0.00 4.00
3117 3405 1.002430 TGGAAACAGCTGCTGGAGTAG 59.998 52.381 31.00 7.71 35.51 2.57
3122 3410 2.949106 CGTGGAAACAGCTGCTGG 59.051 61.111 31.00 14.81 44.46 4.85
3123 3411 1.859427 ATGCGTGGAAACAGCTGCTG 61.859 55.000 27.02 27.02 44.46 4.41
3136 3424 0.592247 GCGAAGGCCATAAATGCGTG 60.592 55.000 5.01 0.00 0.00 5.34
3154 3442 3.433274 GGAAGCTGCAAAACCAATTTAGC 59.567 43.478 1.02 0.00 34.27 3.09
3182 4153 0.390340 TGAAGGCATCACAGTCGAGC 60.390 55.000 0.00 0.00 31.50 5.03
3216 4188 8.491331 ACAAATAAACAAATGCAAGAACAAGT 57.509 26.923 0.00 0.00 0.00 3.16
3218 4190 9.160496 AGAACAAATAAACAAATGCAAGAACAA 57.840 25.926 0.00 0.00 0.00 2.83
3219 4191 8.715191 AGAACAAATAAACAAATGCAAGAACA 57.285 26.923 0.00 0.00 0.00 3.18
3224 4232 7.695618 GCAACAAGAACAAATAAACAAATGCAA 59.304 29.630 0.00 0.00 0.00 4.08
3227 4235 6.845280 CCGCAACAAGAACAAATAAACAAATG 59.155 34.615 0.00 0.00 0.00 2.32
3366 4374 1.269517 CCCTCTCATCTACTCAAGCGC 60.270 57.143 0.00 0.00 0.00 5.92
3531 5376 9.377383 CAAATTGATTTGCTCAAATTTCACTTC 57.623 29.630 8.98 0.00 46.62 3.01
3557 5402 8.680903 ACAAGTTAAGAATCATGATCCATGTTC 58.319 33.333 9.06 2.42 41.98 3.18
3581 5426 2.552743 AGATTATCAGCGCGCTAGTACA 59.447 45.455 36.02 17.27 0.00 2.90
3583 5428 4.251268 TCTAGATTATCAGCGCGCTAGTA 58.749 43.478 36.02 25.20 0.00 1.82
3584 5429 3.075148 TCTAGATTATCAGCGCGCTAGT 58.925 45.455 36.02 26.32 0.00 2.57
3585 5430 3.748868 TCTAGATTATCAGCGCGCTAG 57.251 47.619 36.02 26.53 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.