Multiple sequence alignment - TraesCS4A01G067200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G067200 chr4A 100.000 3575 0 0 1 3575 64577017 64573443 0.000000e+00 6602.0
1 TraesCS4A01G067200 chr4A 91.743 109 9 0 205 313 657141714 657141822 6.180000e-33 152.0
2 TraesCS4A01G067200 chr4B 95.700 2256 64 11 571 2800 506331488 506329240 0.000000e+00 3598.0
3 TraesCS4A01G067200 chr4B 92.276 479 27 7 3014 3490 506329223 506328753 0.000000e+00 671.0
4 TraesCS4A01G067200 chr4B 97.368 190 4 1 2812 3000 344467456 344467267 4.450000e-84 322.0
5 TraesCS4A01G067200 chr4B 96.859 191 5 1 2812 3002 128540671 128540860 5.760000e-83 318.0
6 TraesCS4A01G067200 chr4B 91.429 210 17 1 310 518 506333167 506332958 1.620000e-73 287.0
7 TraesCS4A01G067200 chr4B 91.209 182 15 1 1 181 506333364 506333183 2.760000e-61 246.0
8 TraesCS4A01G067200 chr4B 93.269 104 7 0 205 308 583994596 583994493 1.720000e-33 154.0
9 TraesCS4A01G067200 chr4B 89.720 107 11 0 205 311 621511581 621511687 1.730000e-28 137.0
10 TraesCS4A01G067200 chr4D 96.117 2086 51 6 742 2800 409441217 409443299 0.000000e+00 3376.0
11 TraesCS4A01G067200 chr4D 94.186 344 14 4 3009 3351 409443311 409443649 1.470000e-143 520.0
12 TraesCS4A01G067200 chr4D 89.873 79 8 0 3412 3490 409443654 409443732 6.310000e-18 102.0
13 TraesCS4A01G067200 chr1A 99.539 217 1 0 2773 2989 244176811 244177027 2.590000e-106 396.0
14 TraesCS4A01G067200 chr7A 97.382 191 5 0 2810 3000 731343497 731343307 3.440000e-85 326.0
15 TraesCS4A01G067200 chr7A 96.970 33 1 0 3543 3575 53623276 53623308 4.990000e-04 56.5
16 TraesCS4A01G067200 chr7B 97.861 187 4 0 2809 2995 55865148 55864962 1.240000e-84 324.0
17 TraesCS4A01G067200 chr7B 98.370 184 3 0 2810 2993 112029606 112029423 1.240000e-84 324.0
18 TraesCS4A01G067200 chr7B 96.859 191 5 1 2812 3002 198551250 198551061 5.760000e-83 318.0
19 TraesCS4A01G067200 chr7B 96.859 191 4 2 2812 3002 699827899 699828087 5.760000e-83 318.0
20 TraesCS4A01G067200 chr6D 98.361 183 3 0 2812 2994 95293872 95293690 4.450000e-84 322.0
21 TraesCS4A01G067200 chr2B 93.860 114 7 0 205 318 514395767 514395880 4.750000e-39 172.0
22 TraesCS4A01G067200 chr2B 89.720 107 10 1 205 311 142921449 142921554 6.230000e-28 135.0
23 TraesCS4A01G067200 chrUn 92.437 119 8 1 198 315 51452246 51452128 6.140000e-38 169.0
24 TraesCS4A01G067200 chr7D 91.964 112 9 0 205 316 267124058 267124169 1.330000e-34 158.0
25 TraesCS4A01G067200 chr1B 92.523 107 8 0 205 311 589055516 589055410 1.720000e-33 154.0
26 TraesCS4A01G067200 chr3A 92.708 96 6 1 205 299 44727184 44727089 1.730000e-28 137.0
27 TraesCS4A01G067200 chr3A 100.000 28 0 0 287 314 235450636 235450609 6.000000e-03 52.8
28 TraesCS4A01G067200 chr5A 87.500 88 9 2 3489 3575 636630973 636630887 2.270000e-17 100.0
29 TraesCS4A01G067200 chr2A 95.238 42 2 0 3489 3530 720575025 720574984 2.300000e-07 67.6
30 TraesCS4A01G067200 chr5D 97.368 38 0 1 3537 3574 413452457 413452493 2.980000e-06 63.9
31 TraesCS4A01G067200 chr3B 92.683 41 3 0 3491 3531 536267123 536267163 3.850000e-05 60.2
32 TraesCS4A01G067200 chr3D 80.460 87 6 2 3488 3574 64483355 64483280 4.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G067200 chr4A 64573443 64577017 3574 True 6602.000000 6602 100.0000 1 3575 1 chr4A.!!$R1 3574
1 TraesCS4A01G067200 chr4B 506328753 506333364 4611 True 1200.500000 3598 92.6535 1 3490 4 chr4B.!!$R3 3489
2 TraesCS4A01G067200 chr4D 409441217 409443732 2515 False 1332.666667 3376 93.3920 742 3490 3 chr4D.!!$F1 2748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.907704 ACCGTACCTCCAGCCAATCA 60.908 55.0 0.00 0.0 0.0 2.57 F
1696 3149 0.531657 TTGCGGCATCAGGGAATTTG 59.468 50.0 2.28 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 3298 0.028902 GTGTCTCAACCGTTGGCAAC 59.971 55.0 20.27 20.27 0.00 4.17 R
2842 4297 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.00 44.78 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.570442 GTGACGAGGAGGAAGATGAC 57.430 55.000 0.00 0.00 0.00 3.06
37 38 0.907704 ACCGTACCTCCAGCCAATCA 60.908 55.000 0.00 0.00 0.00 2.57
44 45 1.303309 CTCCAGCCAATCATCCGTTC 58.697 55.000 0.00 0.00 0.00 3.95
103 104 2.991250 ACCGAGAAGATTCCATTGTGG 58.009 47.619 0.00 0.00 39.43 4.17
107 108 4.002982 CGAGAAGATTCCATTGTGGTCAA 58.997 43.478 0.00 0.00 39.03 3.18
118 119 1.340088 TGTGGTCAAAATGCCATGCT 58.660 45.000 0.00 0.00 37.09 3.79
121 122 2.093869 GTGGTCAAAATGCCATGCTCAT 60.094 45.455 0.00 0.00 37.09 2.90
158 160 4.188247 GCATTAGCACCGGTATAGATCA 57.812 45.455 6.87 0.00 41.58 2.92
167 169 7.959175 AGCACCGGTATAGATCAAATAACTTA 58.041 34.615 6.87 0.00 0.00 2.24
174 176 8.584600 GGTATAGATCAAATAACTTACGCATCG 58.415 37.037 0.00 0.00 0.00 3.84
176 178 6.512177 AGATCAAATAACTTACGCATCGAC 57.488 37.500 0.00 0.00 0.00 4.20
180 182 5.865013 TCAAATAACTTACGCATCGACAAGA 59.135 36.000 0.00 0.00 0.00 3.02
181 183 5.697848 AATAACTTACGCATCGACAAGAC 57.302 39.130 0.00 0.00 0.00 3.01
182 184 2.717580 ACTTACGCATCGACAAGACA 57.282 45.000 0.00 0.00 0.00 3.41
183 185 3.021269 ACTTACGCATCGACAAGACAA 57.979 42.857 0.00 0.00 0.00 3.18
184 186 3.386486 ACTTACGCATCGACAAGACAAA 58.614 40.909 0.00 0.00 0.00 2.83
185 187 3.805422 ACTTACGCATCGACAAGACAAAA 59.195 39.130 0.00 0.00 0.00 2.44
186 188 4.271533 ACTTACGCATCGACAAGACAAAAA 59.728 37.500 0.00 0.00 0.00 1.94
187 189 3.896648 ACGCATCGACAAGACAAAAAT 57.103 38.095 0.00 0.00 0.00 1.82
195 197 7.148755 GCATCGACAAGACAAAAATAATGCTTT 60.149 33.333 0.00 0.00 34.47 3.51
210 212 9.833917 AAATAATGCTTTTCTACTACTACTCCC 57.166 33.333 0.00 0.00 0.00 4.30
211 213 8.785184 ATAATGCTTTTCTACTACTACTCCCT 57.215 34.615 0.00 0.00 0.00 4.20
212 214 6.718522 ATGCTTTTCTACTACTACTCCCTC 57.281 41.667 0.00 0.00 0.00 4.30
213 215 4.954826 TGCTTTTCTACTACTACTCCCTCC 59.045 45.833 0.00 0.00 0.00 4.30
214 216 4.954826 GCTTTTCTACTACTACTCCCTCCA 59.045 45.833 0.00 0.00 0.00 3.86
215 217 5.599242 GCTTTTCTACTACTACTCCCTCCAT 59.401 44.000 0.00 0.00 0.00 3.41
216 218 6.098552 GCTTTTCTACTACTACTCCCTCCATT 59.901 42.308 0.00 0.00 0.00 3.16
217 219 7.657023 TTTTCTACTACTACTCCCTCCATTC 57.343 40.000 0.00 0.00 0.00 2.67
218 220 6.593759 TTCTACTACTACTCCCTCCATTCT 57.406 41.667 0.00 0.00 0.00 2.40
219 221 7.702807 TTCTACTACTACTCCCTCCATTCTA 57.297 40.000 0.00 0.00 0.00 2.10
220 222 7.702807 TCTACTACTACTCCCTCCATTCTAA 57.297 40.000 0.00 0.00 0.00 2.10
221 223 8.110743 TCTACTACTACTCCCTCCATTCTAAA 57.889 38.462 0.00 0.00 0.00 1.85
222 224 8.734763 TCTACTACTACTCCCTCCATTCTAAAT 58.265 37.037 0.00 0.00 0.00 1.40
223 225 9.369672 CTACTACTACTCCCTCCATTCTAAATT 57.630 37.037 0.00 0.00 0.00 1.82
225 227 9.145442 ACTACTACTCCCTCCATTCTAAATTAC 57.855 37.037 0.00 0.00 0.00 1.89
226 228 9.369672 CTACTACTCCCTCCATTCTAAATTACT 57.630 37.037 0.00 0.00 0.00 2.24
227 229 8.625467 ACTACTCCCTCCATTCTAAATTACTT 57.375 34.615 0.00 0.00 0.00 2.24
228 230 8.487028 ACTACTCCCTCCATTCTAAATTACTTG 58.513 37.037 0.00 0.00 0.00 3.16
229 231 7.272144 ACTCCCTCCATTCTAAATTACTTGT 57.728 36.000 0.00 0.00 0.00 3.16
230 232 7.339482 ACTCCCTCCATTCTAAATTACTTGTC 58.661 38.462 0.00 0.00 0.00 3.18
231 233 6.346096 TCCCTCCATTCTAAATTACTTGTCG 58.654 40.000 0.00 0.00 0.00 4.35
232 234 5.007724 CCCTCCATTCTAAATTACTTGTCGC 59.992 44.000 0.00 0.00 0.00 5.19
233 235 5.817816 CCTCCATTCTAAATTACTTGTCGCT 59.182 40.000 0.00 0.00 0.00 4.93
234 236 6.018669 CCTCCATTCTAAATTACTTGTCGCTC 60.019 42.308 0.00 0.00 0.00 5.03
235 237 6.403049 TCCATTCTAAATTACTTGTCGCTCA 58.597 36.000 0.00 0.00 0.00 4.26
236 238 6.876789 TCCATTCTAAATTACTTGTCGCTCAA 59.123 34.615 0.00 0.00 34.61 3.02
244 246 2.084610 CTTGTCGCTCAAGTGGATGA 57.915 50.000 10.54 0.00 45.89 2.92
245 247 2.416747 CTTGTCGCTCAAGTGGATGAA 58.583 47.619 10.54 0.00 45.89 2.57
246 248 2.768253 TGTCGCTCAAGTGGATGAAT 57.232 45.000 0.00 0.00 0.00 2.57
247 249 2.621338 TGTCGCTCAAGTGGATGAATC 58.379 47.619 0.00 0.00 0.00 2.52
248 250 2.234661 TGTCGCTCAAGTGGATGAATCT 59.765 45.455 0.00 0.00 0.00 2.40
249 251 3.447229 TGTCGCTCAAGTGGATGAATCTA 59.553 43.478 0.00 0.00 0.00 1.98
250 252 4.081697 TGTCGCTCAAGTGGATGAATCTAA 60.082 41.667 0.00 0.00 0.00 2.10
251 253 4.268884 GTCGCTCAAGTGGATGAATCTAAC 59.731 45.833 0.00 0.00 0.00 2.34
252 254 4.081697 TCGCTCAAGTGGATGAATCTAACA 60.082 41.667 0.00 0.00 0.00 2.41
253 255 4.033358 CGCTCAAGTGGATGAATCTAACAC 59.967 45.833 0.00 0.00 0.00 3.32
254 256 5.181748 GCTCAAGTGGATGAATCTAACACT 58.818 41.667 0.00 0.00 43.61 3.55
255 257 6.341316 GCTCAAGTGGATGAATCTAACACTA 58.659 40.000 0.00 0.00 41.15 2.74
256 258 6.989169 GCTCAAGTGGATGAATCTAACACTAT 59.011 38.462 0.00 0.00 41.15 2.12
257 259 7.497249 GCTCAAGTGGATGAATCTAACACTATT 59.503 37.037 0.00 0.00 41.15 1.73
258 260 9.388506 CTCAAGTGGATGAATCTAACACTATTT 57.611 33.333 0.00 0.00 41.15 1.40
259 261 9.739276 TCAAGTGGATGAATCTAACACTATTTT 57.261 29.630 0.00 0.00 41.15 1.82
281 283 9.851686 ATTTTAGTGCTAGATACATCCATTTGA 57.148 29.630 0.00 0.00 0.00 2.69
282 284 9.679661 TTTTAGTGCTAGATACATCCATTTGAA 57.320 29.630 0.00 0.00 0.00 2.69
283 285 8.662781 TTAGTGCTAGATACATCCATTTGAAC 57.337 34.615 0.00 0.00 0.00 3.18
284 286 5.755375 AGTGCTAGATACATCCATTTGAACG 59.245 40.000 0.00 0.00 0.00 3.95
285 287 5.753438 GTGCTAGATACATCCATTTGAACGA 59.247 40.000 0.00 0.00 0.00 3.85
286 288 5.753438 TGCTAGATACATCCATTTGAACGAC 59.247 40.000 0.00 0.00 0.00 4.34
287 289 5.753438 GCTAGATACATCCATTTGAACGACA 59.247 40.000 0.00 0.00 0.00 4.35
288 290 6.257849 GCTAGATACATCCATTTGAACGACAA 59.742 38.462 0.00 0.00 36.65 3.18
289 291 6.668541 AGATACATCCATTTGAACGACAAG 57.331 37.500 0.00 0.00 39.77 3.16
290 292 6.173339 AGATACATCCATTTGAACGACAAGT 58.827 36.000 0.00 0.00 39.77 3.16
291 293 7.327975 AGATACATCCATTTGAACGACAAGTA 58.672 34.615 0.00 0.00 39.77 2.24
292 294 7.822334 AGATACATCCATTTGAACGACAAGTAA 59.178 33.333 0.00 0.00 39.77 2.24
293 295 6.817765 ACATCCATTTGAACGACAAGTAAT 57.182 33.333 0.00 0.00 39.77 1.89
294 296 7.214467 ACATCCATTTGAACGACAAGTAATT 57.786 32.000 0.00 0.00 39.77 1.40
295 297 7.657336 ACATCCATTTGAACGACAAGTAATTT 58.343 30.769 0.00 0.00 39.77 1.82
296 298 7.594758 ACATCCATTTGAACGACAAGTAATTTG 59.405 33.333 0.00 0.00 42.68 2.32
297 299 7.265647 TCCATTTGAACGACAAGTAATTTGA 57.734 32.000 0.00 0.00 39.21 2.69
298 300 7.708051 TCCATTTGAACGACAAGTAATTTGAA 58.292 30.769 0.00 0.00 39.21 2.69
299 301 8.191446 TCCATTTGAACGACAAGTAATTTGAAA 58.809 29.630 0.00 0.00 39.21 2.69
300 302 8.265998 CCATTTGAACGACAAGTAATTTGAAAC 58.734 33.333 0.00 0.00 39.21 2.78
301 303 7.425915 TTTGAACGACAAGTAATTTGAAACG 57.574 32.000 0.00 0.00 39.21 3.60
302 304 5.503498 TGAACGACAAGTAATTTGAAACGG 58.497 37.500 0.00 0.00 39.21 4.44
303 305 5.293814 TGAACGACAAGTAATTTGAAACGGA 59.706 36.000 0.00 0.00 39.21 4.69
304 306 5.338614 ACGACAAGTAATTTGAAACGGAG 57.661 39.130 0.00 0.00 39.21 4.63
305 307 4.212636 ACGACAAGTAATTTGAAACGGAGG 59.787 41.667 0.00 0.00 39.21 4.30
306 308 4.378046 CGACAAGTAATTTGAAACGGAGGG 60.378 45.833 0.00 0.00 39.21 4.30
307 309 4.721132 ACAAGTAATTTGAAACGGAGGGA 58.279 39.130 0.00 0.00 39.21 4.20
308 310 4.760204 ACAAGTAATTTGAAACGGAGGGAG 59.240 41.667 0.00 0.00 39.21 4.30
309 311 4.635699 AGTAATTTGAAACGGAGGGAGT 57.364 40.909 0.00 0.00 0.00 3.85
323 325 3.181448 GGAGGGAGTAGTTGTTTGTTCCA 60.181 47.826 0.00 0.00 0.00 3.53
334 336 3.625853 TGTTTGTTCCATGAACCACTCA 58.374 40.909 0.00 0.00 41.35 3.41
343 345 4.471025 TCCATGAACCACTCATAGTGTCAT 59.529 41.667 6.33 6.78 44.50 3.06
420 422 2.628178 TGCATTATCCCTCGGTAGTCAG 59.372 50.000 0.00 0.00 0.00 3.51
427 429 1.616865 CCCTCGGTAGTCAGTTGTTCA 59.383 52.381 0.00 0.00 0.00 3.18
429 431 2.609737 CCTCGGTAGTCAGTTGTTCACC 60.610 54.545 0.00 0.00 0.00 4.02
437 439 7.280356 GGTAGTCAGTTGTTCACCCATATATT 58.720 38.462 0.00 0.00 0.00 1.28
442 444 9.120538 GTCAGTTGTTCACCCATATATTTGTAT 57.879 33.333 0.00 0.00 0.00 2.29
454 456 9.325248 CCCATATATTTGTATCTTCCCCAATTT 57.675 33.333 0.00 0.00 0.00 1.82
470 472 8.533569 TCCCCAATTTCAATCCTTCTAATTAC 57.466 34.615 0.00 0.00 0.00 1.89
474 476 7.201821 CCAATTTCAATCCTTCTAATTACGCCT 60.202 37.037 0.00 0.00 0.00 5.52
503 505 5.056894 AGGACATCACGTACTTCTACAAC 57.943 43.478 0.00 0.00 33.70 3.32
504 506 4.765856 AGGACATCACGTACTTCTACAACT 59.234 41.667 0.00 0.00 33.70 3.16
505 507 4.857588 GGACATCACGTACTTCTACAACTG 59.142 45.833 0.00 0.00 0.00 3.16
506 508 5.335426 GGACATCACGTACTTCTACAACTGA 60.335 44.000 0.00 0.00 0.00 3.41
507 509 6.268825 ACATCACGTACTTCTACAACTGAT 57.731 37.500 0.00 0.00 0.00 2.90
508 510 6.323266 ACATCACGTACTTCTACAACTGATC 58.677 40.000 0.00 0.00 0.00 2.92
524 560 5.998454 ACTGATCTTCATATTTGCGAAGG 57.002 39.130 0.00 0.00 39.30 3.46
527 563 2.930950 TCTTCATATTTGCGAAGGGGG 58.069 47.619 0.00 0.00 39.30 5.40
531 567 2.158813 TCATATTTGCGAAGGGGGAGAC 60.159 50.000 0.00 0.00 0.00 3.36
549 585 4.009675 GAGACCACAAACTTGCATCCATA 58.990 43.478 0.00 0.00 0.00 2.74
578 614 5.240713 CACAGTTTGGAGAATAATCTGCC 57.759 43.478 0.00 0.00 42.91 4.85
579 615 4.946157 CACAGTTTGGAGAATAATCTGCCT 59.054 41.667 0.00 0.00 42.91 4.75
582 618 5.649395 CAGTTTGGAGAATAATCTGCCTTCA 59.351 40.000 0.00 0.00 42.91 3.02
595 2016 4.074970 TCTGCCTTCAAAATCTGAGAACC 58.925 43.478 0.00 0.00 34.81 3.62
621 2042 4.670621 GTGTTGTCGTGTTCTGCATTAAAG 59.329 41.667 0.00 0.00 0.00 1.85
679 2101 5.339008 AGTTCCATCTTTACTCATACGCA 57.661 39.130 0.00 0.00 0.00 5.24
719 2141 8.560374 GTCACTCTAGTAAGAAAAACAAATGCT 58.440 33.333 0.00 0.00 0.00 3.79
817 2247 3.563479 GGGCCTCTTTGAAGTATTTCCCA 60.563 47.826 0.84 0.00 32.09 4.37
818 2248 3.696548 GGCCTCTTTGAAGTATTTCCCAG 59.303 47.826 0.00 0.00 32.09 4.45
819 2249 4.567747 GGCCTCTTTGAAGTATTTCCCAGA 60.568 45.833 0.00 0.00 32.09 3.86
820 2250 4.637977 GCCTCTTTGAAGTATTTCCCAGAG 59.362 45.833 12.91 12.91 37.78 3.35
821 2251 5.571658 GCCTCTTTGAAGTATTTCCCAGAGA 60.572 44.000 18.10 7.06 39.04 3.10
822 2252 6.112058 CCTCTTTGAAGTATTTCCCAGAGAG 58.888 44.000 18.10 13.25 39.04 3.20
823 2253 6.070538 CCTCTTTGAAGTATTTCCCAGAGAGA 60.071 42.308 18.10 2.38 39.04 3.10
888 2341 2.816083 CGGCCCAACACGCGAATA 60.816 61.111 15.93 0.00 0.00 1.75
902 2355 2.139118 GCGAATAGCCCAGTCTGATTC 58.861 52.381 0.00 1.92 40.81 2.52
949 2402 3.835395 CAAAATGGCCCAAAACCCTACTA 59.165 43.478 0.00 0.00 0.00 1.82
1071 2524 2.364317 TCCTTCCTCTCCGCCCTG 60.364 66.667 0.00 0.00 0.00 4.45
1696 3149 0.531657 TTGCGGCATCAGGGAATTTG 59.468 50.000 2.28 0.00 0.00 2.32
1813 3266 2.092429 GGGTTCTTGGATGAGGCATGTA 60.092 50.000 0.00 0.00 0.00 2.29
1835 3288 7.980062 TGTAATCAAGTAGATAAAATGCGCAA 58.020 30.769 17.11 0.00 35.39 4.85
1845 3298 1.870055 AAATGCGCAACAGAGGGCTG 61.870 55.000 17.11 0.00 46.41 4.85
1897 3350 1.291184 TGATTGCTTGTGCCGAGACG 61.291 55.000 0.00 0.00 38.71 4.18
1908 3361 1.503818 GCCGAGACGCAAGGTTTTCA 61.504 55.000 0.00 0.00 46.39 2.69
1911 3364 1.864711 CGAGACGCAAGGTTTTCAGAA 59.135 47.619 0.00 0.00 46.39 3.02
2095 3548 4.775058 TTTACAATTGCAATACGTGGCT 57.225 36.364 13.39 0.00 0.00 4.75
2232 3685 4.803098 ACGTGGAGTCAAGCTAACTTAT 57.197 40.909 3.40 0.00 33.74 1.73
2414 3867 7.124599 TCGGTTGGTCAAAGGAGTAAGATATAA 59.875 37.037 0.00 0.00 0.00 0.98
2522 3975 1.555075 CTGGGAAGGCTACTACAAGCA 59.445 52.381 0.00 0.00 44.64 3.91
2615 4068 7.009179 TGATTGAGTACCTGAAATGAGAGTT 57.991 36.000 0.00 0.00 0.00 3.01
2662 4115 0.821711 TTTTGGTGCTGGTTCCCTCG 60.822 55.000 0.00 0.00 0.00 4.63
2748 4202 8.364142 CCATGGTTTAATTTCACCTTCTTTACA 58.636 33.333 2.57 0.00 33.76 2.41
2800 4255 2.770164 AGTGCCTGATTTTACGAGCT 57.230 45.000 0.00 0.00 0.00 4.09
2802 4257 2.234908 AGTGCCTGATTTTACGAGCTCT 59.765 45.455 12.85 1.42 0.00 4.09
2803 4258 2.349886 GTGCCTGATTTTACGAGCTCTG 59.650 50.000 12.85 8.06 0.00 3.35
2804 4259 2.233676 TGCCTGATTTTACGAGCTCTGA 59.766 45.455 12.85 0.00 0.00 3.27
2805 4260 2.863137 GCCTGATTTTACGAGCTCTGAG 59.137 50.000 12.85 0.00 0.00 3.35
2806 4261 3.429547 GCCTGATTTTACGAGCTCTGAGA 60.430 47.826 12.85 0.00 0.00 3.27
2807 4262 4.748892 CCTGATTTTACGAGCTCTGAGAA 58.251 43.478 12.85 1.23 0.00 2.87
2808 4263 5.171476 CCTGATTTTACGAGCTCTGAGAAA 58.829 41.667 12.85 7.86 0.00 2.52
2809 4264 5.814705 CCTGATTTTACGAGCTCTGAGAAAT 59.185 40.000 12.85 12.01 0.00 2.17
2810 4265 6.980978 CCTGATTTTACGAGCTCTGAGAAATA 59.019 38.462 12.85 0.00 0.00 1.40
2811 4266 7.168972 CCTGATTTTACGAGCTCTGAGAAATAG 59.831 40.741 12.85 9.98 0.00 1.73
2812 4267 7.772166 TGATTTTACGAGCTCTGAGAAATAGA 58.228 34.615 12.85 1.77 0.00 1.98
2813 4268 8.251026 TGATTTTACGAGCTCTGAGAAATAGAA 58.749 33.333 12.85 0.00 0.00 2.10
2814 4269 8.641499 ATTTTACGAGCTCTGAGAAATAGAAG 57.359 34.615 12.85 0.00 0.00 2.85
2815 4270 4.647424 ACGAGCTCTGAGAAATAGAAGG 57.353 45.455 12.85 0.00 0.00 3.46
2816 4271 3.383185 ACGAGCTCTGAGAAATAGAAGGG 59.617 47.826 12.85 0.00 0.00 3.95
2817 4272 3.243704 CGAGCTCTGAGAAATAGAAGGGG 60.244 52.174 12.85 0.00 0.00 4.79
2818 4273 3.964031 GAGCTCTGAGAAATAGAAGGGGA 59.036 47.826 9.28 0.00 0.00 4.81
2819 4274 3.966665 AGCTCTGAGAAATAGAAGGGGAG 59.033 47.826 9.28 0.00 0.00 4.30
2820 4275 3.494223 GCTCTGAGAAATAGAAGGGGAGC 60.494 52.174 9.28 0.00 37.19 4.70
2821 4276 3.041946 TCTGAGAAATAGAAGGGGAGCC 58.958 50.000 0.00 0.00 0.00 4.70
2822 4277 3.044894 CTGAGAAATAGAAGGGGAGCCT 58.955 50.000 0.00 0.00 0.00 4.58
2823 4278 3.457749 CTGAGAAATAGAAGGGGAGCCTT 59.542 47.826 0.00 0.00 0.00 4.35
2824 4279 3.200825 TGAGAAATAGAAGGGGAGCCTTG 59.799 47.826 0.00 0.00 0.00 3.61
2825 4280 2.511637 AGAAATAGAAGGGGAGCCTTGG 59.488 50.000 0.00 0.00 0.00 3.61
2826 4281 0.553333 AATAGAAGGGGAGCCTTGGC 59.447 55.000 2.97 2.97 0.00 4.52
2827 4282 1.700042 ATAGAAGGGGAGCCTTGGCG 61.700 60.000 5.95 0.00 0.00 5.69
2835 4290 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2836 4291 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2837 4292 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2838 4293 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2839 4294 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2840 4295 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2841 4296 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2846 4301 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2847 4302 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2848 4303 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2849 4304 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2850 4305 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2851 4306 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2852 4307 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2853 4308 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2854 4309 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2855 4310 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2856 4311 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
2857 4312 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
2858 4313 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
2859 4314 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
2860 4315 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
2870 4325 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
2871 4326 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
2872 4327 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
2873 4328 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
2874 4329 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
2875 4330 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
2876 4331 0.680061 GAGGTCACGGGTTCAAGTCT 59.320 55.000 0.00 0.00 0.00 3.24
2877 4332 1.070289 GAGGTCACGGGTTCAAGTCTT 59.930 52.381 0.00 0.00 0.00 3.01
2878 4333 1.202651 AGGTCACGGGTTCAAGTCTTG 60.203 52.381 6.21 6.21 0.00 3.02
2879 4334 1.226746 GTCACGGGTTCAAGTCTTGG 58.773 55.000 12.66 0.00 0.00 3.61
2880 4335 1.124780 TCACGGGTTCAAGTCTTGGA 58.875 50.000 12.66 0.30 0.00 3.53
2881 4336 1.487142 TCACGGGTTCAAGTCTTGGAA 59.513 47.619 12.66 3.49 0.00 3.53
2882 4337 2.092861 TCACGGGTTCAAGTCTTGGAAA 60.093 45.455 12.66 0.00 0.00 3.13
2883 4338 2.032924 CACGGGTTCAAGTCTTGGAAAC 59.967 50.000 12.66 10.07 0.00 2.78
2884 4339 2.294074 CGGGTTCAAGTCTTGGAAACA 58.706 47.619 12.66 0.00 32.36 2.83
2885 4340 2.290641 CGGGTTCAAGTCTTGGAAACAG 59.709 50.000 12.66 5.83 44.54 3.16
2886 4341 2.034685 GGGTTCAAGTCTTGGAAACAGC 59.965 50.000 12.66 2.46 44.54 4.40
2887 4342 2.034685 GGTTCAAGTCTTGGAAACAGCC 59.965 50.000 12.66 0.98 44.54 4.85
2888 4343 2.952310 GTTCAAGTCTTGGAAACAGCCT 59.048 45.455 12.66 0.00 44.54 4.58
2889 4344 2.851195 TCAAGTCTTGGAAACAGCCTC 58.149 47.619 12.66 0.00 44.54 4.70
2890 4345 2.439507 TCAAGTCTTGGAAACAGCCTCT 59.560 45.455 12.66 0.00 44.54 3.69
2891 4346 3.117888 TCAAGTCTTGGAAACAGCCTCTT 60.118 43.478 12.66 0.00 44.54 2.85
2892 4347 4.102524 TCAAGTCTTGGAAACAGCCTCTTA 59.897 41.667 12.66 0.00 44.54 2.10
2893 4348 4.009370 AGTCTTGGAAACAGCCTCTTAC 57.991 45.455 0.00 0.00 44.54 2.34
2894 4349 3.391296 AGTCTTGGAAACAGCCTCTTACA 59.609 43.478 0.00 0.00 44.54 2.41
2895 4350 3.748568 GTCTTGGAAACAGCCTCTTACAG 59.251 47.826 0.00 0.00 44.54 2.74
2896 4351 3.646162 TCTTGGAAACAGCCTCTTACAGA 59.354 43.478 0.00 0.00 44.54 3.41
2897 4352 4.102524 TCTTGGAAACAGCCTCTTACAGAA 59.897 41.667 0.00 0.00 44.54 3.02
2898 4353 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
2899 4354 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
2900 4355 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
2901 4356 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
2902 4357 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
2903 4358 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
2904 4359 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
2905 4360 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
2906 4361 3.118223 AGCCTCTTACAGAAATGTAGGGC 60.118 47.826 15.09 15.09 36.96 5.19
2907 4362 3.370527 GCCTCTTACAGAAATGTAGGGCA 60.371 47.826 16.67 0.00 36.83 5.36
2908 4363 4.843728 CCTCTTACAGAAATGTAGGGCAA 58.156 43.478 0.00 0.00 0.00 4.52
2909 4364 4.878397 CCTCTTACAGAAATGTAGGGCAAG 59.122 45.833 0.00 0.00 0.00 4.01
2910 4365 4.843728 TCTTACAGAAATGTAGGGCAAGG 58.156 43.478 0.00 0.00 0.00 3.61
2911 4366 1.839424 ACAGAAATGTAGGGCAAGGC 58.161 50.000 0.00 0.00 0.00 4.35
2912 4367 1.355720 ACAGAAATGTAGGGCAAGGCT 59.644 47.619 0.00 0.00 0.00 4.58
2913 4368 1.747355 CAGAAATGTAGGGCAAGGCTG 59.253 52.381 0.00 0.00 0.00 4.85
2924 4379 1.651987 GCAAGGCTGCGTACAATAGA 58.348 50.000 0.00 0.00 39.20 1.98
2925 4380 1.327764 GCAAGGCTGCGTACAATAGAC 59.672 52.381 0.00 0.00 39.20 2.59
2926 4381 1.933853 CAAGGCTGCGTACAATAGACC 59.066 52.381 0.00 0.00 0.00 3.85
2927 4382 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2928 4383 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2929 4384 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2930 4385 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
2931 4386 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
2932 4387 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
2933 4388 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2934 4389 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2935 4390 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2940 4395 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2941 4396 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2942 4397 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2943 4398 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2944 4399 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2945 4400 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2946 4401 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2947 4402 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2948 4403 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
2955 4410 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
2982 4437 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
2983 4438 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
2984 4439 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
2985 4440 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
2986 4441 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
2987 4442 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
2993 4448 2.917227 CACCGGGCTGCCCTTTTT 60.917 61.111 33.39 13.23 42.67 1.94
3031 4486 2.295885 GGCCTGGACAAGATGATCAAG 58.704 52.381 0.00 0.00 0.00 3.02
3050 4505 4.692625 TCAAGCTCAAATGTGTTCTAGAGC 59.307 41.667 0.00 0.00 46.47 4.09
3096 4551 6.165577 GGATTTGTGCTTCATGTTATGGTTT 58.834 36.000 0.00 0.00 0.00 3.27
3100 4555 6.403866 TGTGCTTCATGTTATGGTTTCTTT 57.596 33.333 0.00 0.00 0.00 2.52
3102 4557 5.863935 GTGCTTCATGTTATGGTTTCTTTCC 59.136 40.000 0.00 0.00 0.00 3.13
3106 4561 5.067273 TCATGTTATGGTTTCTTTCCACGT 58.933 37.500 0.00 0.00 37.81 4.49
3124 4579 1.079681 TGGACAATCCCGTGTACGC 60.080 57.895 0.00 0.00 34.82 4.42
3131 4586 2.325583 ATCCCGTGTACGCATTCATT 57.674 45.000 7.29 0.00 38.18 2.57
3206 4661 6.446781 AGAGATTGTTTATGGATGCAGTTG 57.553 37.500 0.00 0.00 0.00 3.16
3351 4807 0.461693 GATGTGCTCCACTGCCTCTC 60.462 60.000 0.00 0.00 35.11 3.20
3360 4816 1.902508 CCACTGCCTCTCCAAACTCTA 59.097 52.381 0.00 0.00 0.00 2.43
3362 4818 3.594134 CACTGCCTCTCCAAACTCTAAG 58.406 50.000 0.00 0.00 0.00 2.18
3363 4819 3.007398 CACTGCCTCTCCAAACTCTAAGT 59.993 47.826 0.00 0.00 0.00 2.24
3365 4821 3.999663 CTGCCTCTCCAAACTCTAAGTTG 59.000 47.826 0.00 0.00 38.66 3.16
3366 4822 3.646162 TGCCTCTCCAAACTCTAAGTTGA 59.354 43.478 0.00 0.00 38.66 3.18
3367 4823 3.997681 GCCTCTCCAAACTCTAAGTTGAC 59.002 47.826 0.00 0.00 38.66 3.18
3368 4824 4.503296 GCCTCTCCAAACTCTAAGTTGACA 60.503 45.833 0.00 0.00 38.66 3.58
3415 4871 6.774354 CCAAAATGGTTCAAAATGTCTCTG 57.226 37.500 0.00 0.00 31.35 3.35
3446 4902 5.981088 ATTGCCTGTGATGATTAAACACA 57.019 34.783 0.00 0.00 41.27 3.72
3467 4923 7.335627 ACACAGAAATGGAAAGTATATTCGGA 58.664 34.615 0.00 0.00 0.00 4.55
3497 4953 3.764237 TGTTTGTCAAGTACTCCCTCC 57.236 47.619 0.00 0.00 0.00 4.30
3498 4954 2.370849 TGTTTGTCAAGTACTCCCTCCC 59.629 50.000 0.00 0.00 0.00 4.30
3499 4955 2.638363 GTTTGTCAAGTACTCCCTCCCT 59.362 50.000 0.00 0.00 0.00 4.20
3500 4956 2.233305 TGTCAAGTACTCCCTCCCTC 57.767 55.000 0.00 0.00 0.00 4.30
3501 4957 1.273098 TGTCAAGTACTCCCTCCCTCC 60.273 57.143 0.00 0.00 0.00 4.30
3502 4958 0.338814 TCAAGTACTCCCTCCCTCCC 59.661 60.000 0.00 0.00 0.00 4.30
3503 4959 0.042731 CAAGTACTCCCTCCCTCCCA 59.957 60.000 0.00 0.00 0.00 4.37
3504 4960 0.797579 AAGTACTCCCTCCCTCCCAA 59.202 55.000 0.00 0.00 0.00 4.12
3505 4961 0.797579 AGTACTCCCTCCCTCCCAAA 59.202 55.000 0.00 0.00 0.00 3.28
3506 4962 1.153565 AGTACTCCCTCCCTCCCAAAA 59.846 52.381 0.00 0.00 0.00 2.44
3507 4963 2.206223 GTACTCCCTCCCTCCCAAAAT 58.794 52.381 0.00 0.00 0.00 1.82
3508 4964 2.680439 ACTCCCTCCCTCCCAAAATA 57.320 50.000 0.00 0.00 0.00 1.40
3509 4965 2.942905 ACTCCCTCCCTCCCAAAATAA 58.057 47.619 0.00 0.00 0.00 1.40
3510 4966 3.274383 ACTCCCTCCCTCCCAAAATAAA 58.726 45.455 0.00 0.00 0.00 1.40
3511 4967 3.864770 ACTCCCTCCCTCCCAAAATAAAT 59.135 43.478 0.00 0.00 0.00 1.40
3512 4968 4.218312 CTCCCTCCCTCCCAAAATAAATG 58.782 47.826 0.00 0.00 0.00 2.32
3513 4969 3.600617 TCCCTCCCTCCCAAAATAAATGT 59.399 43.478 0.00 0.00 0.00 2.71
3514 4970 3.960755 CCCTCCCTCCCAAAATAAATGTC 59.039 47.826 0.00 0.00 0.00 3.06
3515 4971 3.632145 CCTCCCTCCCAAAATAAATGTCG 59.368 47.826 0.00 0.00 0.00 4.35
3516 4972 4.270008 CTCCCTCCCAAAATAAATGTCGT 58.730 43.478 0.00 0.00 0.00 4.34
3517 4973 4.668636 TCCCTCCCAAAATAAATGTCGTT 58.331 39.130 0.00 0.00 0.00 3.85
3518 4974 4.461081 TCCCTCCCAAAATAAATGTCGTTG 59.539 41.667 0.00 0.00 0.00 4.10
3519 4975 4.461081 CCCTCCCAAAATAAATGTCGTTGA 59.539 41.667 0.00 0.00 0.00 3.18
3520 4976 5.127031 CCCTCCCAAAATAAATGTCGTTGAT 59.873 40.000 0.00 0.00 0.00 2.57
3521 4977 6.350949 CCCTCCCAAAATAAATGTCGTTGATT 60.351 38.462 0.00 0.00 0.00 2.57
3522 4978 7.096551 CCTCCCAAAATAAATGTCGTTGATTT 58.903 34.615 0.00 0.00 0.00 2.17
3523 4979 8.247562 CCTCCCAAAATAAATGTCGTTGATTTA 58.752 33.333 1.18 0.00 31.50 1.40
3524 4980 9.289303 CTCCCAAAATAAATGTCGTTGATTTAG 57.711 33.333 1.18 0.00 30.69 1.85
3525 4981 8.798402 TCCCAAAATAAATGTCGTTGATTTAGT 58.202 29.630 1.18 0.00 30.69 2.24
3557 5013 8.752766 TTGTACTACAGTTGTACTAAATCAGC 57.247 34.615 21.23 0.00 40.44 4.26
3558 5014 7.025365 TGTACTACAGTTGTACTAAATCAGCG 58.975 38.462 21.23 0.00 40.44 5.18
3559 5015 6.263516 ACTACAGTTGTACTAAATCAGCGA 57.736 37.500 0.00 0.00 0.00 4.93
3560 5016 6.091437 ACTACAGTTGTACTAAATCAGCGAC 58.909 40.000 0.00 0.00 0.00 5.19
3561 5017 4.878439 ACAGTTGTACTAAATCAGCGACA 58.122 39.130 0.00 0.00 0.00 4.35
3562 5018 4.684703 ACAGTTGTACTAAATCAGCGACAC 59.315 41.667 0.00 0.00 0.00 3.67
3563 5019 4.923871 CAGTTGTACTAAATCAGCGACACT 59.076 41.667 0.00 0.00 0.00 3.55
3564 5020 5.405571 CAGTTGTACTAAATCAGCGACACTT 59.594 40.000 0.00 0.00 0.00 3.16
3565 5021 6.584942 CAGTTGTACTAAATCAGCGACACTTA 59.415 38.462 0.00 0.00 0.00 2.24
3566 5022 6.585322 AGTTGTACTAAATCAGCGACACTTAC 59.415 38.462 0.00 0.00 0.00 2.34
3567 5023 6.263516 TGTACTAAATCAGCGACACTTACT 57.736 37.500 0.00 0.00 0.00 2.24
3568 5024 6.684686 TGTACTAAATCAGCGACACTTACTT 58.315 36.000 0.00 0.00 0.00 2.24
3569 5025 7.149973 TGTACTAAATCAGCGACACTTACTTT 58.850 34.615 0.00 0.00 0.00 2.66
3570 5026 7.654520 TGTACTAAATCAGCGACACTTACTTTT 59.345 33.333 0.00 0.00 0.00 2.27
3571 5027 6.888430 ACTAAATCAGCGACACTTACTTTTG 58.112 36.000 0.00 0.00 0.00 2.44
3572 5028 4.749245 AATCAGCGACACTTACTTTTGG 57.251 40.909 0.00 0.00 0.00 3.28
3573 5029 3.462483 TCAGCGACACTTACTTTTGGA 57.538 42.857 0.00 0.00 0.00 3.53
3574 5030 3.128349 TCAGCGACACTTACTTTTGGAC 58.872 45.455 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.682323 GGTACGGTCATCTTCCTCCTC 59.318 57.143 0.00 0.00 0.00 3.71
16 17 0.907704 ATTGGCTGGAGGTACGGTCA 60.908 55.000 0.00 0.00 0.00 4.02
19 20 0.469917 ATGATTGGCTGGAGGTACGG 59.530 55.000 0.00 0.00 0.00 4.02
37 38 3.463944 AGACACAAAGAAACGAACGGAT 58.536 40.909 0.00 0.00 0.00 4.18
44 45 4.530094 TGCTTGTAGACACAAAGAAACG 57.470 40.909 0.00 0.00 43.92 3.60
93 94 2.702478 TGGCATTTTGACCACAATGGAA 59.298 40.909 0.84 0.00 40.96 3.53
103 104 5.002464 ACTTATGAGCATGGCATTTTGAC 57.998 39.130 0.00 0.00 0.00 3.18
107 108 4.708421 ACAAGACTTATGAGCATGGCATTT 59.292 37.500 0.00 0.00 0.00 2.32
118 119 7.970061 GCTAATGCAATTCAACAAGACTTATGA 59.030 33.333 0.00 0.00 37.87 2.15
149 151 9.338291 TCGATGCGTAAGTTATTTGATCTATAC 57.662 33.333 0.00 0.00 41.68 1.47
158 160 5.636121 TGTCTTGTCGATGCGTAAGTTATTT 59.364 36.000 0.00 0.00 41.68 1.40
167 169 3.896648 ATTTTTGTCTTGTCGATGCGT 57.103 38.095 0.00 0.00 0.00 5.24
184 186 9.833917 GGGAGTAGTAGTAGAAAAGCATTATTT 57.166 33.333 0.00 0.00 0.00 1.40
185 187 9.214962 AGGGAGTAGTAGTAGAAAAGCATTATT 57.785 33.333 0.00 0.00 0.00 1.40
186 188 8.785184 AGGGAGTAGTAGTAGAAAAGCATTAT 57.215 34.615 0.00 0.00 0.00 1.28
187 189 7.287235 GGAGGGAGTAGTAGTAGAAAAGCATTA 59.713 40.741 0.00 0.00 0.00 1.90
195 197 6.593759 AGAATGGAGGGAGTAGTAGTAGAA 57.406 41.667 0.00 0.00 0.00 2.10
205 207 7.272144 ACAAGTAATTTAGAATGGAGGGAGT 57.728 36.000 0.00 0.00 0.00 3.85
206 208 6.480320 CGACAAGTAATTTAGAATGGAGGGAG 59.520 42.308 0.00 0.00 0.00 4.30
207 209 6.346096 CGACAAGTAATTTAGAATGGAGGGA 58.654 40.000 0.00 0.00 0.00 4.20
208 210 5.007724 GCGACAAGTAATTTAGAATGGAGGG 59.992 44.000 0.00 0.00 0.00 4.30
209 211 5.817816 AGCGACAAGTAATTTAGAATGGAGG 59.182 40.000 0.00 0.00 0.00 4.30
210 212 6.535150 TGAGCGACAAGTAATTTAGAATGGAG 59.465 38.462 0.00 0.00 0.00 3.86
211 213 6.403049 TGAGCGACAAGTAATTTAGAATGGA 58.597 36.000 0.00 0.00 0.00 3.41
212 214 6.662414 TGAGCGACAAGTAATTTAGAATGG 57.338 37.500 0.00 0.00 0.00 3.16
226 228 2.542020 TTCATCCACTTGAGCGACAA 57.458 45.000 0.00 0.00 36.97 3.18
227 229 2.234661 AGATTCATCCACTTGAGCGACA 59.765 45.455 0.00 0.00 0.00 4.35
228 230 2.898705 AGATTCATCCACTTGAGCGAC 58.101 47.619 0.00 0.00 0.00 5.19
229 231 4.081697 TGTTAGATTCATCCACTTGAGCGA 60.082 41.667 0.00 0.00 0.00 4.93
230 232 4.033358 GTGTTAGATTCATCCACTTGAGCG 59.967 45.833 0.00 0.00 0.00 5.03
231 233 5.181748 AGTGTTAGATTCATCCACTTGAGC 58.818 41.667 0.00 0.00 32.72 4.26
232 234 8.954950 AATAGTGTTAGATTCATCCACTTGAG 57.045 34.615 0.00 0.00 37.53 3.02
233 235 9.739276 AAAATAGTGTTAGATTCATCCACTTGA 57.261 29.630 0.00 0.00 37.53 3.02
255 257 9.851686 TCAAATGGATGTATCTAGCACTAAAAT 57.148 29.630 0.00 0.00 0.00 1.82
256 258 9.679661 TTCAAATGGATGTATCTAGCACTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
257 259 9.109393 GTTCAAATGGATGTATCTAGCACTAAA 57.891 33.333 0.00 0.00 0.00 1.85
258 260 7.438160 CGTTCAAATGGATGTATCTAGCACTAA 59.562 37.037 0.00 0.00 0.00 2.24
259 261 6.923508 CGTTCAAATGGATGTATCTAGCACTA 59.076 38.462 0.00 0.00 0.00 2.74
260 262 5.755375 CGTTCAAATGGATGTATCTAGCACT 59.245 40.000 0.00 0.00 0.00 4.40
261 263 5.753438 TCGTTCAAATGGATGTATCTAGCAC 59.247 40.000 0.00 0.00 0.00 4.40
262 264 5.753438 GTCGTTCAAATGGATGTATCTAGCA 59.247 40.000 0.00 0.00 0.00 3.49
263 265 5.753438 TGTCGTTCAAATGGATGTATCTAGC 59.247 40.000 0.00 0.00 0.00 3.42
264 266 7.492669 ACTTGTCGTTCAAATGGATGTATCTAG 59.507 37.037 0.00 0.00 35.48 2.43
265 267 7.327975 ACTTGTCGTTCAAATGGATGTATCTA 58.672 34.615 0.00 0.00 35.48 1.98
266 268 6.173339 ACTTGTCGTTCAAATGGATGTATCT 58.827 36.000 0.00 0.00 35.48 1.98
267 269 6.422776 ACTTGTCGTTCAAATGGATGTATC 57.577 37.500 0.00 0.00 35.48 2.24
268 270 7.915293 TTACTTGTCGTTCAAATGGATGTAT 57.085 32.000 0.00 0.00 35.48 2.29
269 271 7.915293 ATTACTTGTCGTTCAAATGGATGTA 57.085 32.000 0.00 0.00 35.48 2.29
270 272 6.817765 ATTACTTGTCGTTCAAATGGATGT 57.182 33.333 0.00 0.00 35.48 3.06
271 273 7.807433 TCAAATTACTTGTCGTTCAAATGGATG 59.193 33.333 0.00 0.00 36.34 3.51
272 274 7.881142 TCAAATTACTTGTCGTTCAAATGGAT 58.119 30.769 0.00 0.00 36.34 3.41
273 275 7.265647 TCAAATTACTTGTCGTTCAAATGGA 57.734 32.000 0.00 0.00 36.34 3.41
274 276 7.922505 TTCAAATTACTTGTCGTTCAAATGG 57.077 32.000 0.00 0.00 36.34 3.16
275 277 7.990499 CGTTTCAAATTACTTGTCGTTCAAATG 59.010 33.333 0.00 0.00 36.34 2.32
276 278 7.166804 CCGTTTCAAATTACTTGTCGTTCAAAT 59.833 33.333 0.00 0.00 36.34 2.32
277 279 6.469595 CCGTTTCAAATTACTTGTCGTTCAAA 59.530 34.615 0.00 0.00 36.34 2.69
278 280 5.966503 CCGTTTCAAATTACTTGTCGTTCAA 59.033 36.000 0.00 0.00 36.34 2.69
279 281 5.293814 TCCGTTTCAAATTACTTGTCGTTCA 59.706 36.000 0.00 0.00 36.34 3.18
280 282 5.740406 TCCGTTTCAAATTACTTGTCGTTC 58.260 37.500 0.00 0.00 36.34 3.95
281 283 5.277634 CCTCCGTTTCAAATTACTTGTCGTT 60.278 40.000 0.00 0.00 36.34 3.85
282 284 4.212636 CCTCCGTTTCAAATTACTTGTCGT 59.787 41.667 0.00 0.00 36.34 4.34
283 285 4.378046 CCCTCCGTTTCAAATTACTTGTCG 60.378 45.833 0.00 0.00 36.34 4.35
284 286 4.758165 TCCCTCCGTTTCAAATTACTTGTC 59.242 41.667 0.00 0.00 36.34 3.18
285 287 4.721132 TCCCTCCGTTTCAAATTACTTGT 58.279 39.130 0.00 0.00 36.34 3.16
286 288 4.760204 ACTCCCTCCGTTTCAAATTACTTG 59.240 41.667 0.00 0.00 36.25 3.16
287 289 4.981812 ACTCCCTCCGTTTCAAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
288 290 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
289 291 5.485620 ACTACTCCCTCCGTTTCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
290 292 5.750352 ACTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
291 293 4.635699 ACTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
292 294 4.202430 ACAACTACTCCCTCCGTTTCAAAT 60.202 41.667 0.00 0.00 0.00 2.32
293 295 3.135167 ACAACTACTCCCTCCGTTTCAAA 59.865 43.478 0.00 0.00 0.00 2.69
294 296 2.701951 ACAACTACTCCCTCCGTTTCAA 59.298 45.455 0.00 0.00 0.00 2.69
295 297 2.322658 ACAACTACTCCCTCCGTTTCA 58.677 47.619 0.00 0.00 0.00 2.69
296 298 3.397849 AACAACTACTCCCTCCGTTTC 57.602 47.619 0.00 0.00 0.00 2.78
297 299 3.118149 ACAAACAACTACTCCCTCCGTTT 60.118 43.478 0.00 0.00 0.00 3.60
298 300 2.436911 ACAAACAACTACTCCCTCCGTT 59.563 45.455 0.00 0.00 0.00 4.44
299 301 2.044758 ACAAACAACTACTCCCTCCGT 58.955 47.619 0.00 0.00 0.00 4.69
300 302 2.833631 ACAAACAACTACTCCCTCCG 57.166 50.000 0.00 0.00 0.00 4.63
301 303 3.181448 TGGAACAAACAACTACTCCCTCC 60.181 47.826 0.00 0.00 31.92 4.30
302 304 4.081322 TGGAACAAACAACTACTCCCTC 57.919 45.455 0.00 0.00 31.92 4.30
306 308 8.809048 AGTGGTTCATGGAACAAACAACTACTC 61.809 40.741 10.86 0.00 40.39 2.59
307 309 7.083653 AGTGGTTCATGGAACAAACAACTACT 61.084 38.462 10.86 0.00 40.39 2.57
308 310 5.067283 AGTGGTTCATGGAACAAACAACTAC 59.933 40.000 10.86 0.00 40.39 2.73
309 311 5.197451 AGTGGTTCATGGAACAAACAACTA 58.803 37.500 10.86 0.00 40.39 2.24
365 367 0.746659 GGCCAATTCAGCATACCCAC 59.253 55.000 0.00 0.00 0.00 4.61
399 401 2.628178 CTGACTACCGAGGGATAATGCA 59.372 50.000 0.00 0.00 0.00 3.96
427 429 7.415004 TTGGGGAAGATACAAATATATGGGT 57.585 36.000 0.00 0.00 0.00 4.51
437 439 6.502138 AGGATTGAAATTGGGGAAGATACAA 58.498 36.000 0.00 0.00 0.00 2.41
442 444 5.275263 AGAAGGATTGAAATTGGGGAAGA 57.725 39.130 0.00 0.00 0.00 2.87
454 456 5.584649 CACAAGGCGTAATTAGAAGGATTGA 59.415 40.000 0.00 0.00 0.00 2.57
474 476 4.859304 AGTACGTGATGTCCTTACACAA 57.141 40.909 0.00 0.00 38.78 3.33
490 492 9.737427 AATATGAAGATCAGTTGTAGAAGTACG 57.263 33.333 0.00 0.00 30.95 3.67
493 495 8.887717 GCAAATATGAAGATCAGTTGTAGAAGT 58.112 33.333 0.00 0.00 0.00 3.01
503 505 4.214971 CCCCTTCGCAAATATGAAGATCAG 59.785 45.833 3.67 0.00 43.34 2.90
504 506 4.136796 CCCCTTCGCAAATATGAAGATCA 58.863 43.478 3.67 0.00 43.34 2.92
505 507 3.503748 CCCCCTTCGCAAATATGAAGATC 59.496 47.826 3.67 0.00 43.34 2.75
506 508 3.138283 TCCCCCTTCGCAAATATGAAGAT 59.862 43.478 3.67 0.00 43.34 2.40
507 509 2.507886 TCCCCCTTCGCAAATATGAAGA 59.492 45.455 3.67 0.00 43.34 2.87
508 510 2.880890 CTCCCCCTTCGCAAATATGAAG 59.119 50.000 0.00 0.00 40.97 3.02
524 560 0.467290 TGCAAGTTTGTGGTCTCCCC 60.467 55.000 0.00 0.00 0.00 4.81
527 563 2.229792 TGGATGCAAGTTTGTGGTCTC 58.770 47.619 0.00 0.00 0.00 3.36
567 603 8.218338 TCTCAGATTTTGAAGGCAGATTATTC 57.782 34.615 0.00 0.00 34.81 1.75
573 609 4.074970 GGTTCTCAGATTTTGAAGGCAGA 58.925 43.478 0.00 0.00 34.81 4.26
574 610 3.120060 CGGTTCTCAGATTTTGAAGGCAG 60.120 47.826 0.00 0.00 34.81 4.85
575 611 2.813754 CGGTTCTCAGATTTTGAAGGCA 59.186 45.455 0.00 0.00 34.81 4.75
576 612 3.074412 TCGGTTCTCAGATTTTGAAGGC 58.926 45.455 0.00 0.00 34.81 4.35
577 613 4.153117 CACTCGGTTCTCAGATTTTGAAGG 59.847 45.833 0.00 0.00 34.81 3.46
578 614 4.752101 ACACTCGGTTCTCAGATTTTGAAG 59.248 41.667 0.00 0.00 34.81 3.02
579 615 4.703897 ACACTCGGTTCTCAGATTTTGAA 58.296 39.130 0.00 0.00 34.81 2.69
582 618 4.451900 ACAACACTCGGTTCTCAGATTTT 58.548 39.130 0.00 0.00 37.72 1.82
595 2016 0.229753 GCAGAACACGACAACACTCG 59.770 55.000 0.00 0.00 39.68 4.18
621 2042 3.697439 TAGCCGGACAAGCATGGGC 62.697 63.158 5.05 0.05 44.07 5.36
634 2055 4.497473 TTCAACCTTGATTTGTTAGCCG 57.503 40.909 0.00 0.00 37.00 5.52
692 2114 8.342634 GCATTTGTTTTTCTTACTAGAGTGACA 58.657 33.333 0.00 0.00 0.00 3.58
693 2115 8.560374 AGCATTTGTTTTTCTTACTAGAGTGAC 58.440 33.333 0.00 0.00 0.00 3.67
694 2116 8.677148 AGCATTTGTTTTTCTTACTAGAGTGA 57.323 30.769 0.00 0.00 0.00 3.41
723 2145 0.450184 GCGGGACATATGCGTGTTTT 59.550 50.000 1.58 0.00 31.16 2.43
727 2149 2.972505 GGGCGGGACATATGCGTG 60.973 66.667 1.58 0.00 0.00 5.34
729 2151 2.032528 ATGGGCGGGACATATGCG 59.967 61.111 1.58 0.00 0.00 4.73
730 2152 0.957395 CTCATGGGCGGGACATATGC 60.957 60.000 1.58 0.00 0.00 3.14
731 2153 0.397941 ACTCATGGGCGGGACATATG 59.602 55.000 0.00 0.00 0.00 1.78
732 2154 0.687354 GACTCATGGGCGGGACATAT 59.313 55.000 0.00 0.00 0.00 1.78
733 2155 1.407656 GGACTCATGGGCGGGACATA 61.408 60.000 0.00 0.00 0.00 2.29
734 2156 2.746375 GGACTCATGGGCGGGACAT 61.746 63.158 0.00 0.00 0.00 3.06
735 2157 3.399181 GGACTCATGGGCGGGACA 61.399 66.667 0.00 0.00 0.00 4.02
736 2158 3.391665 CTGGACTCATGGGCGGGAC 62.392 68.421 0.00 0.00 0.00 4.46
737 2159 3.083349 CTGGACTCATGGGCGGGA 61.083 66.667 0.00 0.00 0.00 5.14
738 2160 4.864334 GCTGGACTCATGGGCGGG 62.864 72.222 0.00 0.00 0.00 6.13
888 2341 1.283321 GGAAAGGAATCAGACTGGGCT 59.717 52.381 1.81 0.00 0.00 5.19
902 2355 3.433031 GGTTTTGGTTTTGGAGGGAAAGG 60.433 47.826 0.00 0.00 0.00 3.11
949 2402 2.596338 CGGGTCGCCAGGGTTTTT 60.596 61.111 0.00 0.00 0.00 1.94
1071 2524 3.717294 TTGGCGGAGAAGGAGGCC 61.717 66.667 0.00 0.00 45.76 5.19
1696 3149 9.315363 TCTTTCTAATATCCTCTCCACCTTATC 57.685 37.037 0.00 0.00 0.00 1.75
1813 3266 6.851609 TGTTGCGCATTTTATCTACTTGATT 58.148 32.000 12.75 0.00 36.65 2.57
1845 3298 0.028902 GTGTCTCAACCGTTGGCAAC 59.971 55.000 20.27 20.27 0.00 4.17
1847 3300 0.813610 CAGTGTCTCAACCGTTGGCA 60.814 55.000 11.35 5.85 0.00 4.92
1897 3350 2.620585 AGACTGCTTCTGAAAACCTTGC 59.379 45.455 0.00 0.00 31.12 4.01
1978 3431 1.068753 CGCAGAGCCTACCCATCAG 59.931 63.158 0.00 0.00 0.00 2.90
2095 3548 3.496331 GGAATTTCCCAACTCCACAGAA 58.504 45.455 3.89 0.00 0.00 3.02
2658 4111 0.319900 CTGGTGTGTGAAGGACGAGG 60.320 60.000 0.00 0.00 0.00 4.63
2662 4115 1.537202 GATTGCTGGTGTGTGAAGGAC 59.463 52.381 0.00 0.00 0.00 3.85
2748 4202 9.866655 TGAAAAACTAGCTGGGATTAATATCAT 57.133 29.630 0.85 0.00 32.09 2.45
2753 4207 5.893824 CCCTGAAAAACTAGCTGGGATTAAT 59.106 40.000 0.85 0.00 41.73 1.40
2800 4255 3.041946 GGCTCCCCTTCTATTTCTCAGA 58.958 50.000 0.00 0.00 0.00 3.27
2802 4257 3.136641 AGGCTCCCCTTCTATTTCTCA 57.863 47.619 0.00 0.00 38.74 3.27
2817 4272 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2818 4273 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2819 4274 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2820 4275 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2821 4276 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2822 4277 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2823 4278 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2824 4279 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2828 4283 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2829 4284 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2830 4285 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2831 4286 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2832 4287 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2833 4288 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2834 4289 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2835 4290 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2836 4291 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2837 4292 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2838 4293 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
2839 4294 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
2840 4295 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
2841 4296 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
2842 4297 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
2843 4298 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
2854 4309 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
2855 4310 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
2856 4311 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
2857 4312 0.680061 AGACTTGAACCCGTGACCTC 59.320 55.000 0.00 0.00 0.00 3.85
2858 4313 1.129058 AAGACTTGAACCCGTGACCT 58.871 50.000 0.00 0.00 0.00 3.85
2859 4314 1.226746 CAAGACTTGAACCCGTGACC 58.773 55.000 9.76 0.00 0.00 4.02
2860 4315 1.202604 TCCAAGACTTGAACCCGTGAC 60.203 52.381 16.99 0.00 0.00 3.67
2861 4316 1.124780 TCCAAGACTTGAACCCGTGA 58.875 50.000 16.99 0.54 0.00 4.35
2862 4317 1.961793 TTCCAAGACTTGAACCCGTG 58.038 50.000 16.99 0.00 0.00 4.94
2863 4318 2.294979 GTTTCCAAGACTTGAACCCGT 58.705 47.619 16.99 0.00 0.00 5.28
2864 4319 2.290641 CTGTTTCCAAGACTTGAACCCG 59.709 50.000 16.99 4.73 0.00 5.28
2865 4320 2.034685 GCTGTTTCCAAGACTTGAACCC 59.965 50.000 16.99 4.73 0.00 4.11
2866 4321 2.034685 GGCTGTTTCCAAGACTTGAACC 59.965 50.000 16.99 2.96 0.00 3.62
2867 4322 2.952310 AGGCTGTTTCCAAGACTTGAAC 59.048 45.455 16.99 13.58 0.00 3.18
2868 4323 3.117888 AGAGGCTGTTTCCAAGACTTGAA 60.118 43.478 16.99 6.40 0.00 2.69
2869 4324 2.439507 AGAGGCTGTTTCCAAGACTTGA 59.560 45.455 16.99 0.20 0.00 3.02
2870 4325 2.856222 AGAGGCTGTTTCCAAGACTTG 58.144 47.619 8.31 8.31 0.00 3.16
2871 4326 3.584733 AAGAGGCTGTTTCCAAGACTT 57.415 42.857 0.00 0.00 0.00 3.01
2872 4327 3.391296 TGTAAGAGGCTGTTTCCAAGACT 59.609 43.478 0.90 0.00 0.00 3.24
2873 4328 3.740115 TGTAAGAGGCTGTTTCCAAGAC 58.260 45.455 0.90 0.00 0.00 3.01
2874 4329 3.646162 TCTGTAAGAGGCTGTTTCCAAGA 59.354 43.478 0.90 0.00 38.67 3.02
2875 4330 4.008074 TCTGTAAGAGGCTGTTTCCAAG 57.992 45.455 0.90 0.00 38.67 3.61
2888 4343 4.843728 CCTTGCCCTACATTTCTGTAAGA 58.156 43.478 0.00 0.00 44.68 2.10
2889 4344 3.378427 GCCTTGCCCTACATTTCTGTAAG 59.622 47.826 0.00 0.00 37.41 2.34
2890 4345 3.010138 AGCCTTGCCCTACATTTCTGTAA 59.990 43.478 0.00 0.00 37.41 2.41
2891 4346 2.576191 AGCCTTGCCCTACATTTCTGTA 59.424 45.455 0.00 0.00 36.79 2.74
2892 4347 1.355720 AGCCTTGCCCTACATTTCTGT 59.644 47.619 0.00 0.00 39.49 3.41
2893 4348 1.747355 CAGCCTTGCCCTACATTTCTG 59.253 52.381 0.00 0.00 0.00 3.02
2894 4349 1.957113 GCAGCCTTGCCCTACATTTCT 60.957 52.381 0.00 0.00 44.74 2.52
2895 4350 0.457443 GCAGCCTTGCCCTACATTTC 59.543 55.000 0.00 0.00 44.74 2.17
2896 4351 2.583472 GCAGCCTTGCCCTACATTT 58.417 52.632 0.00 0.00 44.74 2.32
2897 4352 4.344237 GCAGCCTTGCCCTACATT 57.656 55.556 0.00 0.00 44.74 2.71
2906 4361 1.933853 GGTCTATTGTACGCAGCCTTG 59.066 52.381 0.00 0.00 0.00 3.61
2907 4362 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2908 4363 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2909 4364 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2910 4365 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2911 4366 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2912 4367 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2913 4368 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2914 4369 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2924 4379 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2925 4380 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2926 4381 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2927 4382 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2928 4383 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2929 4384 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2930 4385 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2931 4386 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
2938 4393 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
2954 4409 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2957 4412 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2958 4413 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2959 4414 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2960 4415 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2966 4421 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
2967 4422 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
2968 4423 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
2969 4424 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
2970 4425 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
2990 4445 6.326323 AGGCCCAAACTTCTATTTCTCAAAAA 59.674 34.615 0.00 0.00 0.00 1.94
2991 4446 5.838521 AGGCCCAAACTTCTATTTCTCAAAA 59.161 36.000 0.00 0.00 0.00 2.44
2992 4447 5.243730 CAGGCCCAAACTTCTATTTCTCAAA 59.756 40.000 0.00 0.00 0.00 2.69
2993 4448 4.766891 CAGGCCCAAACTTCTATTTCTCAA 59.233 41.667 0.00 0.00 0.00 3.02
2994 4449 4.335416 CAGGCCCAAACTTCTATTTCTCA 58.665 43.478 0.00 0.00 0.00 3.27
2995 4450 3.696548 CCAGGCCCAAACTTCTATTTCTC 59.303 47.826 0.00 0.00 0.00 2.87
2996 4451 3.333680 TCCAGGCCCAAACTTCTATTTCT 59.666 43.478 0.00 0.00 0.00 2.52
2997 4452 3.444034 GTCCAGGCCCAAACTTCTATTTC 59.556 47.826 0.00 0.00 0.00 2.17
2998 4453 3.181423 TGTCCAGGCCCAAACTTCTATTT 60.181 43.478 0.00 0.00 0.00 1.40
2999 4454 2.378547 TGTCCAGGCCCAAACTTCTATT 59.621 45.455 0.00 0.00 0.00 1.73
3000 4455 1.992557 TGTCCAGGCCCAAACTTCTAT 59.007 47.619 0.00 0.00 0.00 1.98
3001 4456 1.440618 TGTCCAGGCCCAAACTTCTA 58.559 50.000 0.00 0.00 0.00 2.10
3002 4457 0.555769 TTGTCCAGGCCCAAACTTCT 59.444 50.000 0.00 0.00 0.00 2.85
3003 4458 0.961753 CTTGTCCAGGCCCAAACTTC 59.038 55.000 0.00 0.00 0.00 3.01
3004 4459 0.555769 TCTTGTCCAGGCCCAAACTT 59.444 50.000 0.00 0.00 0.00 2.66
3005 4460 0.779997 ATCTTGTCCAGGCCCAAACT 59.220 50.000 0.00 0.00 0.00 2.66
3006 4461 0.890683 CATCTTGTCCAGGCCCAAAC 59.109 55.000 0.00 0.00 0.00 2.93
3007 4462 0.776810 TCATCTTGTCCAGGCCCAAA 59.223 50.000 0.00 0.00 0.00 3.28
3031 4486 5.362556 TTTGCTCTAGAACACATTTGAGC 57.637 39.130 0.00 0.00 44.77 4.26
3050 4505 7.537596 TCCATACCTTTATGCCCAATATTTG 57.462 36.000 0.00 0.00 34.71 2.32
3100 4555 2.211410 ACGGGATTGTCCACGTGGA 61.211 57.895 33.23 33.23 40.28 4.02
3102 4557 3.561429 CACGGGATTGTCCACGTG 58.439 61.111 9.08 9.08 46.41 4.49
3106 4561 1.079681 GCGTACACGGGATTGTCCA 60.080 57.895 3.67 0.00 38.64 4.02
3124 4579 7.597369 AGACAACACAATGATGAACAATGAATG 59.403 33.333 0.00 0.00 33.96 2.67
3131 4586 5.833406 AACAGACAACACAATGATGAACA 57.167 34.783 0.00 0.00 0.00 3.18
3206 4661 8.490355 CAAAACAAAATAAGAAGTGCAATCTCC 58.510 33.333 3.91 0.00 0.00 3.71
3260 4715 7.459795 TGGCACAACTGATCAAACATTATTA 57.540 32.000 0.00 0.00 31.92 0.98
3319 4775 6.942576 AGTGGAGCACATCAAAATACTTACTT 59.057 34.615 0.00 0.00 36.74 2.24
3320 4776 6.372659 CAGTGGAGCACATCAAAATACTTACT 59.627 38.462 0.00 0.00 36.74 2.24
3321 4777 6.546395 CAGTGGAGCACATCAAAATACTTAC 58.454 40.000 0.00 0.00 36.74 2.34
3322 4778 5.123820 GCAGTGGAGCACATCAAAATACTTA 59.876 40.000 0.00 0.00 36.74 2.24
3323 4779 4.082571 GCAGTGGAGCACATCAAAATACTT 60.083 41.667 0.00 0.00 36.74 2.24
3407 4863 2.032550 GCAATATGCAACGCAGAGACAT 59.967 45.455 0.00 0.00 43.65 3.06
3446 4902 9.224267 CATCATCCGAATATACTTTCCATTTCT 57.776 33.333 0.00 0.00 0.00 2.52
3490 4946 4.218312 CATTTATTTTGGGAGGGAGGGAG 58.782 47.826 0.00 0.00 0.00 4.30
3491 4947 3.600617 ACATTTATTTTGGGAGGGAGGGA 59.399 43.478 0.00 0.00 0.00 4.20
3492 4948 3.960755 GACATTTATTTTGGGAGGGAGGG 59.039 47.826 0.00 0.00 0.00 4.30
3493 4949 3.632145 CGACATTTATTTTGGGAGGGAGG 59.368 47.826 0.00 0.00 0.00 4.30
3494 4950 4.270008 ACGACATTTATTTTGGGAGGGAG 58.730 43.478 0.00 0.00 0.00 4.30
3495 4951 4.310022 ACGACATTTATTTTGGGAGGGA 57.690 40.909 0.00 0.00 0.00 4.20
3496 4952 4.461081 TCAACGACATTTATTTTGGGAGGG 59.539 41.667 0.00 0.00 0.00 4.30
3497 4953 5.637006 TCAACGACATTTATTTTGGGAGG 57.363 39.130 0.00 0.00 0.00 4.30
3498 4954 9.289303 CTAAATCAACGACATTTATTTTGGGAG 57.711 33.333 0.00 0.00 0.00 4.30
3499 4955 8.798402 ACTAAATCAACGACATTTATTTTGGGA 58.202 29.630 0.00 0.00 0.00 4.37
3500 4956 8.980143 ACTAAATCAACGACATTTATTTTGGG 57.020 30.769 0.00 0.00 0.00 4.12
3531 4987 9.367444 GCTGATTTAGTACAACTGTAGTACAAT 57.633 33.333 4.21 0.00 43.24 2.71
3532 4988 7.539710 CGCTGATTTAGTACAACTGTAGTACAA 59.460 37.037 4.21 3.98 43.24 2.41
3533 4989 7.025365 CGCTGATTTAGTACAACTGTAGTACA 58.975 38.462 2.36 2.36 43.24 2.90
3534 4990 7.217825 GTCGCTGATTTAGTACAACTGTAGTAC 59.782 40.741 4.28 0.00 41.59 2.73
3535 4991 7.094677 TGTCGCTGATTTAGTACAACTGTAGTA 60.095 37.037 0.00 1.08 35.85 1.82
3536 4992 6.091437 GTCGCTGATTTAGTACAACTGTAGT 58.909 40.000 0.00 2.89 37.82 2.73
3537 4993 6.033619 GTGTCGCTGATTTAGTACAACTGTAG 59.966 42.308 0.00 0.00 0.00 2.74
3538 4994 5.860182 GTGTCGCTGATTTAGTACAACTGTA 59.140 40.000 0.00 0.00 0.00 2.74
3539 4995 4.684703 GTGTCGCTGATTTAGTACAACTGT 59.315 41.667 0.00 0.00 0.00 3.55
3540 4996 4.923871 AGTGTCGCTGATTTAGTACAACTG 59.076 41.667 0.00 0.00 0.00 3.16
3541 4997 5.135508 AGTGTCGCTGATTTAGTACAACT 57.864 39.130 0.00 0.00 0.00 3.16
3542 4998 5.840940 AAGTGTCGCTGATTTAGTACAAC 57.159 39.130 0.00 0.00 0.00 3.32
3543 4999 6.684686 AGTAAGTGTCGCTGATTTAGTACAA 58.315 36.000 0.00 0.00 0.00 2.41
3544 5000 6.263516 AGTAAGTGTCGCTGATTTAGTACA 57.736 37.500 0.00 0.00 0.00 2.90
3545 5001 7.578169 AAAGTAAGTGTCGCTGATTTAGTAC 57.422 36.000 0.00 0.00 0.00 2.73
3546 5002 7.117236 CCAAAAGTAAGTGTCGCTGATTTAGTA 59.883 37.037 0.00 0.00 0.00 1.82
3547 5003 6.073222 CCAAAAGTAAGTGTCGCTGATTTAGT 60.073 38.462 0.00 0.00 0.00 2.24
3548 5004 6.147164 TCCAAAAGTAAGTGTCGCTGATTTAG 59.853 38.462 0.00 0.00 0.00 1.85
3549 5005 5.992829 TCCAAAAGTAAGTGTCGCTGATTTA 59.007 36.000 0.00 0.00 0.00 1.40
3550 5006 4.819630 TCCAAAAGTAAGTGTCGCTGATTT 59.180 37.500 0.00 0.00 0.00 2.17
3551 5007 4.213482 GTCCAAAAGTAAGTGTCGCTGATT 59.787 41.667 0.00 0.00 0.00 2.57
3552 5008 3.746492 GTCCAAAAGTAAGTGTCGCTGAT 59.254 43.478 0.00 0.00 0.00 2.90
3553 5009 3.128349 GTCCAAAAGTAAGTGTCGCTGA 58.872 45.455 0.00 0.00 0.00 4.26
3554 5010 3.521524 GTCCAAAAGTAAGTGTCGCTG 57.478 47.619 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.