Multiple sequence alignment - TraesCS4A01G066600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G066600 chr4A 100.000 6397 0 0 1 6397 63820342 63813946 0.000000e+00 11814.0
1 TraesCS4A01G066600 chr4A 87.820 665 45 20 3092 3729 695668873 695668218 0.000000e+00 747.0
2 TraesCS4A01G066600 chr4A 92.553 188 12 2 1 188 83749777 83749592 1.060000e-67 268.0
3 TraesCS4A01G066600 chr4A 86.822 129 12 3 4356 4483 504845520 504845396 8.650000e-29 139.0
4 TraesCS4A01G066600 chr4B 90.088 2946 140 69 458 3280 505505044 505502128 0.000000e+00 3683.0
5 TraesCS4A01G066600 chr4B 90.776 1984 90 38 4429 6397 505499890 505497985 0.000000e+00 2564.0
6 TraesCS4A01G066600 chr4B 92.956 724 23 5 3730 4443 505501581 505500876 0.000000e+00 1029.0
7 TraesCS4A01G066600 chr4B 85.263 665 58 22 3092 3729 648942727 648943378 0.000000e+00 649.0
8 TraesCS4A01G066600 chr4B 92.650 449 20 7 3295 3737 505502049 505501608 9.050000e-178 634.0
9 TraesCS4A01G066600 chr4B 90.336 238 8 4 4216 4443 505500141 505499909 1.350000e-76 298.0
10 TraesCS4A01G066600 chr4B 83.774 265 24 9 1132 1381 165045775 165045515 3.860000e-57 233.0
11 TraesCS4A01G066600 chr4B 87.317 205 22 2 3092 3295 560292333 560292132 1.390000e-56 231.0
12 TraesCS4A01G066600 chr4B 95.652 115 5 0 4429 4543 505500857 505500743 1.100000e-42 185.0
13 TraesCS4A01G066600 chr4B 77.821 257 41 9 4524 4778 616303825 616303583 1.860000e-30 145.0
14 TraesCS4A01G066600 chr4D 91.762 2537 113 49 458 2920 406207309 406204795 0.000000e+00 3439.0
15 TraesCS4A01G066600 chr4D 94.798 865 31 9 5535 6397 406202316 406201464 0.000000e+00 1336.0
16 TraesCS4A01G066600 chr4D 93.836 584 27 5 3336 3916 406204218 406203641 0.000000e+00 870.0
17 TraesCS4A01G066600 chr4D 88.227 739 39 21 4757 5473 406203042 406202330 0.000000e+00 839.0
18 TraesCS4A01G066600 chr4D 94.362 337 18 1 3950 4286 406203641 406203306 3.420000e-142 516.0
19 TraesCS4A01G066600 chr4D 90.076 393 24 6 2910 3295 406204771 406204387 4.450000e-136 496.0
20 TraesCS4A01G066600 chr4D 93.684 190 10 2 1 189 22021634 22021822 3.780000e-72 283.0
21 TraesCS4A01G066600 chr4D 81.452 248 27 7 4294 4522 406203261 406203014 1.100000e-42 185.0
22 TraesCS4A01G066600 chr6B 90.703 441 32 4 3295 3729 251104771 251105208 4.300000e-161 579.0
23 TraesCS4A01G066600 chr6B 91.481 270 19 3 3295 3563 306014292 306014026 1.010000e-97 368.0
24 TraesCS4A01G066600 chr6B 90.000 190 15 2 3092 3280 306014552 306014366 6.410000e-60 243.0
25 TraesCS4A01G066600 chr6B 90.341 176 11 2 3559 3729 306002221 306002047 6.450000e-55 226.0
26 TraesCS4A01G066600 chr7D 90.819 403 34 3 3894 4295 205526993 205526593 2.620000e-148 536.0
27 TraesCS4A01G066600 chr7D 93.011 186 10 3 1 185 597915223 597915406 1.060000e-67 268.0
28 TraesCS4A01G066600 chr7D 83.456 272 41 4 184 453 471936551 471936282 3.830000e-62 250.0
29 TraesCS4A01G066600 chr7D 90.441 136 12 1 4522 4656 629085578 629085443 1.830000e-40 178.0
30 TraesCS4A01G066600 chr5D 89.563 412 38 5 3886 4295 219453437 219453029 9.510000e-143 518.0
31 TraesCS4A01G066600 chr5D 83.516 273 38 7 184 453 399968726 399968458 1.380000e-61 248.0
32 TraesCS4A01G066600 chr5D 83.088 272 43 3 184 453 126955302 126955032 1.780000e-60 244.0
33 TraesCS4A01G066600 chr5D 83.212 274 38 8 184 453 260858428 260858697 1.780000e-60 244.0
34 TraesCS4A01G066600 chr5D 94.000 150 6 2 3295 3443 449367818 449367671 2.320000e-54 224.0
35 TraesCS4A01G066600 chr5D 95.000 60 3 0 5019 5078 219452752 219452693 1.900000e-15 95.3
36 TraesCS4A01G066600 chr2D 86.364 418 44 8 3886 4295 216881291 216880879 1.640000e-120 444.0
37 TraesCS4A01G066600 chr2D 84.926 272 36 5 184 453 624546572 624546840 2.940000e-68 270.0
38 TraesCS4A01G066600 chr2D 84.249 273 37 6 184 453 594146046 594146315 1.770000e-65 261.0
39 TraesCS4A01G066600 chr3B 89.873 237 21 2 4061 4295 580881842 580881607 1.040000e-77 302.0
40 TraesCS4A01G066600 chr3B 85.130 269 32 4 4518 4779 700376354 700376621 1.060000e-67 268.0
41 TraesCS4A01G066600 chr3B 88.421 190 18 2 3092 3280 750434555 750434369 6.450000e-55 226.0
42 TraesCS4A01G066600 chr3D 89.496 238 21 3 4061 4295 294603094 294602858 1.350000e-76 298.0
43 TraesCS4A01G066600 chr3D 100.000 28 0 0 5256 5283 581548463 581548490 1.200000e-02 52.8
44 TraesCS4A01G066600 chr7A 85.294 272 37 3 184 453 512187184 512186914 1.760000e-70 278.0
45 TraesCS4A01G066600 chr2A 85.294 272 36 4 184 453 778726009 778726278 1.760000e-70 278.0
46 TraesCS4A01G066600 chr1A 93.514 185 12 0 1 185 486575628 486575812 6.320000e-70 276.0
47 TraesCS4A01G066600 chr1A 94.000 150 6 2 3295 3443 476758511 476758364 2.320000e-54 224.0
48 TraesCS4A01G066600 chr1A 86.508 126 12 2 4356 4480 387662059 387662180 4.020000e-27 134.0
49 TraesCS4A01G066600 chr5A 93.989 183 8 3 1 183 417251383 417251562 2.270000e-69 274.0
50 TraesCS4A01G066600 chr5A 92.593 189 12 2 1 189 428984605 428984419 2.940000e-68 270.0
51 TraesCS4A01G066600 chr5A 87.597 129 11 2 4356 4483 630005284 630005160 1.860000e-30 145.0
52 TraesCS4A01G066600 chr3A 93.514 185 8 3 1 184 730176411 730176592 8.170000e-69 272.0
53 TraesCS4A01G066600 chr3A 92.973 185 11 1 1 185 337897277 337897095 1.060000e-67 268.0
54 TraesCS4A01G066600 chr3A 94.000 150 7 2 3295 3443 68451428 68451576 6.450000e-55 226.0
55 TraesCS4A01G066600 chr3A 81.319 273 37 10 4518 4779 663588804 663589073 6.500000e-50 209.0
56 TraesCS4A01G066600 chr3A 87.302 126 11 2 4356 4480 99751511 99751632 8.650000e-29 139.0
57 TraesCS4A01G066600 chr6A 92.973 185 12 1 1 185 516340259 516340442 1.060000e-67 268.0
58 TraesCS4A01G066600 chr6A 84.483 174 15 4 4357 4522 587378753 587378922 1.850000e-35 161.0
59 TraesCS4A01G066600 chr2B 83.456 272 42 3 184 453 569123289 569123559 3.830000e-62 250.0
60 TraesCS4A01G066600 chr2B 86.047 129 13 3 4356 4483 598662157 598662033 4.020000e-27 134.0
61 TraesCS4A01G066600 chr6D 86.508 126 12 2 4356 4480 173978115 173978236 4.020000e-27 134.0
62 TraesCS4A01G066600 chr1B 85.271 129 14 3 4356 4483 399565056 399564932 1.870000e-25 128.0
63 TraesCS4A01G066600 chr7B 75.261 287 37 19 4522 4777 623821364 623821081 8.770000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G066600 chr4A 63813946 63820342 6396 True 11814.000000 11814 100.000000 1 6397 1 chr4A.!!$R1 6396
1 TraesCS4A01G066600 chr4A 695668218 695668873 655 True 747.000000 747 87.820000 3092 3729 1 chr4A.!!$R4 637
2 TraesCS4A01G066600 chr4B 505497985 505505044 7059 True 1398.833333 3683 92.076333 458 6397 6 chr4B.!!$R4 5939
3 TraesCS4A01G066600 chr4B 648942727 648943378 651 False 649.000000 649 85.263000 3092 3729 1 chr4B.!!$F1 637
4 TraesCS4A01G066600 chr4D 406201464 406207309 5845 True 1097.285714 3439 90.644714 458 6397 7 chr4D.!!$R1 5939
5 TraesCS4A01G066600 chr6B 306014026 306014552 526 True 305.500000 368 90.740500 3092 3563 2 chr6B.!!$R2 471
6 TraesCS4A01G066600 chr5D 219452693 219453437 744 True 306.650000 518 92.281500 3886 5078 2 chr5D.!!$R4 1192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.039527 GCCGAACTGTGCCGAAATTT 60.040 50.0 0.00 0.0 0.00 1.82 F
247 248 0.118346 TGACATGTGGGTCTAGGGGT 59.882 55.0 1.15 0.0 38.61 4.95 F
1911 1971 0.172803 GTAACGCGTCCAGTCCAGAT 59.827 55.0 14.44 0.0 0.00 2.90 F
2508 2590 0.037605 GTTGACTCGGGTGGGTACAG 60.038 60.0 0.00 0.0 0.00 2.74 F
2654 2737 0.251033 TGCAATGCAAGCCTGAGTCT 60.251 50.0 5.01 0.0 34.76 3.24 F
3060 3227 0.542938 GGCCAAGGCTTCTCCCTTTT 60.543 55.0 11.40 0.0 42.48 2.27 F
4101 4470 0.610174 AGCAAGTGAGAGCGGAATCA 59.390 50.0 0.00 0.0 35.48 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 1842 0.103026 TCTCGCGGATGTCCTTGATG 59.897 55.000 6.13 0.00 0.00 3.07 R
2007 2067 1.132436 CACCTGCAATGCGTACGTG 59.868 57.895 17.90 8.58 0.00 4.49 R
2757 2854 0.322975 GTAGCTGCCGATCCATGGAT 59.677 55.000 27.66 27.66 37.59 3.41 R
3940 4308 0.028902 AGTTTTCTTTCGGTGCACGC 59.971 50.000 11.45 2.85 43.86 5.34 R
3997 4366 0.681887 TCAGCCACAATCTGCATGGG 60.682 55.000 5.47 0.00 33.81 4.00 R
4940 6378 1.165270 AGCAATACGAAAGGGTGTGC 58.835 50.000 0.00 0.00 34.39 4.57 R
5399 6848 0.041238 TCCGGAAGAGGATGGTCAGT 59.959 55.000 0.00 0.00 34.92 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.964174 TTAGCCGAACTTCGCCGA 59.036 55.556 5.61 0.00 38.82 5.54
18 19 1.289694 TTAGCCGAACTTCGCCGAA 59.710 52.632 5.61 0.00 38.82 4.30
19 20 1.010419 TTAGCCGAACTTCGCCGAAC 61.010 55.000 5.61 0.00 38.82 3.95
20 21 1.870055 TAGCCGAACTTCGCCGAACT 61.870 55.000 5.61 0.00 38.82 3.01
21 22 3.011760 GCCGAACTTCGCCGAACTG 62.012 63.158 5.61 0.00 38.82 3.16
22 23 1.663702 CCGAACTTCGCCGAACTGT 60.664 57.895 5.61 0.00 38.82 3.55
23 24 1.487231 CGAACTTCGCCGAACTGTG 59.513 57.895 0.00 0.00 31.14 3.66
24 25 1.204312 GAACTTCGCCGAACTGTGC 59.796 57.895 0.00 0.00 0.00 4.57
25 26 2.171489 GAACTTCGCCGAACTGTGCC 62.171 60.000 0.00 0.00 0.00 5.01
26 27 3.777925 CTTCGCCGAACTGTGCCG 61.778 66.667 0.00 0.00 0.00 5.69
27 28 4.287781 TTCGCCGAACTGTGCCGA 62.288 61.111 0.00 0.00 0.00 5.54
28 29 3.793775 TTCGCCGAACTGTGCCGAA 62.794 57.895 0.00 0.86 0.00 4.30
29 30 3.342627 CGCCGAACTGTGCCGAAA 61.343 61.111 4.71 0.00 0.00 3.46
30 31 2.677003 CGCCGAACTGTGCCGAAAT 61.677 57.895 4.71 0.00 0.00 2.17
31 32 1.579429 GCCGAACTGTGCCGAAATT 59.421 52.632 4.71 0.00 0.00 1.82
32 33 0.039527 GCCGAACTGTGCCGAAATTT 60.040 50.000 0.00 0.00 0.00 1.82
33 34 1.685302 CCGAACTGTGCCGAAATTTG 58.315 50.000 0.00 0.00 0.00 2.32
34 35 1.001815 CCGAACTGTGCCGAAATTTGT 60.002 47.619 0.00 0.00 0.00 2.83
35 36 2.542824 CCGAACTGTGCCGAAATTTGTT 60.543 45.455 0.00 0.00 0.00 2.83
36 37 3.304123 CCGAACTGTGCCGAAATTTGTTA 60.304 43.478 0.00 0.00 0.00 2.41
37 38 4.472286 CGAACTGTGCCGAAATTTGTTAT 58.528 39.130 0.00 0.00 0.00 1.89
38 39 5.391097 CCGAACTGTGCCGAAATTTGTTATA 60.391 40.000 0.00 0.00 0.00 0.98
39 40 5.506832 CGAACTGTGCCGAAATTTGTTATAC 59.493 40.000 0.00 0.00 0.00 1.47
40 41 6.569179 AACTGTGCCGAAATTTGTTATACT 57.431 33.333 0.00 0.00 0.00 2.12
41 42 6.569179 ACTGTGCCGAAATTTGTTATACTT 57.431 33.333 0.00 0.00 0.00 2.24
42 43 6.977213 ACTGTGCCGAAATTTGTTATACTTT 58.023 32.000 0.00 0.00 0.00 2.66
43 44 7.430441 ACTGTGCCGAAATTTGTTATACTTTT 58.570 30.769 0.00 0.00 0.00 2.27
44 45 7.923878 ACTGTGCCGAAATTTGTTATACTTTTT 59.076 29.630 0.00 0.00 0.00 1.94
45 46 8.288217 TGTGCCGAAATTTGTTATACTTTTTC 57.712 30.769 0.00 0.00 0.00 2.29
46 47 8.138712 TGTGCCGAAATTTGTTATACTTTTTCT 58.861 29.630 0.00 0.00 0.00 2.52
47 48 8.974408 GTGCCGAAATTTGTTATACTTTTTCTT 58.026 29.630 0.00 0.00 0.00 2.52
48 49 9.535878 TGCCGAAATTTGTTATACTTTTTCTTT 57.464 25.926 0.00 0.00 0.00 2.52
61 62 6.864560 ACTTTTTCTTTATTTAATCGCGCC 57.135 33.333 0.00 0.00 0.00 6.53
62 63 6.617879 ACTTTTTCTTTATTTAATCGCGCCT 58.382 32.000 0.00 0.00 0.00 5.52
63 64 6.526674 ACTTTTTCTTTATTTAATCGCGCCTG 59.473 34.615 0.00 0.00 0.00 4.85
64 65 4.545823 TTCTTTATTTAATCGCGCCTGG 57.454 40.909 0.00 0.00 0.00 4.45
65 66 2.875933 TCTTTATTTAATCGCGCCTGGG 59.124 45.455 0.00 0.00 0.00 4.45
66 67 1.600023 TTATTTAATCGCGCCTGGGG 58.400 50.000 0.00 6.36 0.00 4.96
67 68 0.250553 TATTTAATCGCGCCTGGGGG 60.251 55.000 13.07 2.93 0.00 5.40
68 69 2.279037 ATTTAATCGCGCCTGGGGGT 62.279 55.000 13.07 0.00 34.45 4.95
69 70 3.690685 TTAATCGCGCCTGGGGGTG 62.691 63.158 13.07 10.40 45.33 4.61
107 108 4.410400 GGACCAACTCGCCCCCAG 62.410 72.222 0.00 0.00 0.00 4.45
108 109 4.410400 GACCAACTCGCCCCCAGG 62.410 72.222 0.00 0.00 0.00 4.45
131 132 3.972276 TTTTTGCGCCGGCTCACC 61.972 61.111 26.68 10.54 40.82 4.02
145 146 4.096003 CACCCCCAGACGGCGATT 62.096 66.667 16.62 0.00 0.00 3.34
146 147 3.327404 ACCCCCAGACGGCGATTT 61.327 61.111 16.62 0.00 0.00 2.17
147 148 2.045340 CCCCCAGACGGCGATTTT 60.045 61.111 16.62 0.00 0.00 1.82
148 149 1.222387 CCCCCAGACGGCGATTTTA 59.778 57.895 16.62 0.00 0.00 1.52
149 150 0.814010 CCCCCAGACGGCGATTTTAG 60.814 60.000 16.62 0.00 0.00 1.85
150 151 0.814010 CCCCAGACGGCGATTTTAGG 60.814 60.000 16.62 6.17 0.00 2.69
151 152 1.436983 CCCAGACGGCGATTTTAGGC 61.437 60.000 16.62 0.00 0.00 3.93
157 158 3.592814 GCGATTTTAGGCGCCCCC 61.593 66.667 26.15 5.00 46.93 5.40
159 160 2.186826 CGATTTTAGGCGCCCCCTG 61.187 63.158 26.15 2.62 45.91 4.45
160 161 1.828224 GATTTTAGGCGCCCCCTGG 60.828 63.158 26.15 0.00 45.91 4.45
161 162 3.373932 ATTTTAGGCGCCCCCTGGG 62.374 63.158 26.15 5.50 45.91 4.45
183 184 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
184 185 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
185 186 1.088340 CAACGGCTGGAGATGCTCTG 61.088 60.000 0.00 0.00 0.00 3.35
186 187 1.260538 AACGGCTGGAGATGCTCTGA 61.261 55.000 0.00 0.00 0.00 3.27
187 188 1.227205 CGGCTGGAGATGCTCTGAC 60.227 63.158 0.00 0.00 0.00 3.51
188 189 1.903294 GGCTGGAGATGCTCTGACA 59.097 57.895 0.00 0.00 0.00 3.58
189 190 0.469070 GGCTGGAGATGCTCTGACAT 59.531 55.000 0.00 0.00 0.00 3.06
190 191 1.584175 GCTGGAGATGCTCTGACATG 58.416 55.000 0.00 0.00 0.00 3.21
191 192 1.134461 GCTGGAGATGCTCTGACATGT 60.134 52.381 0.00 0.00 0.00 3.21
192 193 2.552031 CTGGAGATGCTCTGACATGTG 58.448 52.381 1.15 0.00 0.00 3.21
193 194 1.208776 TGGAGATGCTCTGACATGTGG 59.791 52.381 1.15 0.00 0.00 4.17
194 195 1.483827 GGAGATGCTCTGACATGTGGA 59.516 52.381 1.15 0.00 0.00 4.02
195 196 2.483363 GGAGATGCTCTGACATGTGGAG 60.483 54.545 1.15 11.85 0.00 3.86
197 198 4.215349 GCTCTGACATGTGGAGCC 57.785 61.111 27.01 15.89 44.46 4.70
198 199 1.451028 GCTCTGACATGTGGAGCCC 60.451 63.158 27.01 11.01 44.46 5.19
199 200 1.222936 CTCTGACATGTGGAGCCCC 59.777 63.158 1.15 0.00 0.00 5.80
200 201 1.538629 TCTGACATGTGGAGCCCCA 60.539 57.895 1.15 0.00 40.95 4.96
201 202 0.915872 TCTGACATGTGGAGCCCCAT 60.916 55.000 1.15 0.00 45.68 4.00
202 203 0.839277 CTGACATGTGGAGCCCCATA 59.161 55.000 1.15 0.00 45.68 2.74
203 204 0.546122 TGACATGTGGAGCCCCATAC 59.454 55.000 1.15 0.00 45.68 2.39
204 205 0.839946 GACATGTGGAGCCCCATACT 59.160 55.000 1.15 0.00 45.68 2.12
205 206 1.212935 GACATGTGGAGCCCCATACTT 59.787 52.381 1.15 0.00 45.68 2.24
206 207 2.438021 GACATGTGGAGCCCCATACTTA 59.562 50.000 1.15 0.00 45.68 2.24
207 208 2.172717 ACATGTGGAGCCCCATACTTAC 59.827 50.000 0.00 0.00 45.68 2.34
208 209 1.209621 TGTGGAGCCCCATACTTACC 58.790 55.000 0.00 0.00 45.68 2.85
209 210 1.209621 GTGGAGCCCCATACTTACCA 58.790 55.000 0.00 0.00 45.68 3.25
210 211 1.774856 GTGGAGCCCCATACTTACCAT 59.225 52.381 0.00 0.00 45.68 3.55
211 212 2.174854 GTGGAGCCCCATACTTACCATT 59.825 50.000 0.00 0.00 45.68 3.16
212 213 2.174639 TGGAGCCCCATACTTACCATTG 59.825 50.000 0.00 0.00 37.58 2.82
213 214 2.174854 GGAGCCCCATACTTACCATTGT 59.825 50.000 0.00 0.00 0.00 2.71
214 215 3.214328 GAGCCCCATACTTACCATTGTG 58.786 50.000 0.00 0.00 0.00 3.33
215 216 2.849943 AGCCCCATACTTACCATTGTGA 59.150 45.455 0.00 0.00 0.00 3.58
216 217 3.117888 AGCCCCATACTTACCATTGTGAG 60.118 47.826 0.00 0.00 34.42 3.51
217 218 3.118038 GCCCCATACTTACCATTGTGAGA 60.118 47.826 0.00 0.00 32.66 3.27
218 219 4.446311 GCCCCATACTTACCATTGTGAGAT 60.446 45.833 0.00 0.00 32.66 2.75
219 220 5.065914 CCCCATACTTACCATTGTGAGATG 58.934 45.833 0.00 0.00 32.66 2.90
230 231 5.082251 CATTGTGAGATGGAGAGAACTGA 57.918 43.478 0.00 0.00 0.00 3.41
231 232 4.527509 TTGTGAGATGGAGAGAACTGAC 57.472 45.455 0.00 0.00 0.00 3.51
232 233 3.500343 TGTGAGATGGAGAGAACTGACA 58.500 45.455 0.00 0.00 0.00 3.58
233 234 4.092279 TGTGAGATGGAGAGAACTGACAT 58.908 43.478 0.00 0.00 0.00 3.06
234 235 4.081807 TGTGAGATGGAGAGAACTGACATG 60.082 45.833 0.00 0.00 0.00 3.21
235 236 4.081752 GTGAGATGGAGAGAACTGACATGT 60.082 45.833 0.00 0.00 0.00 3.21
236 237 4.081807 TGAGATGGAGAGAACTGACATGTG 60.082 45.833 1.15 0.00 0.00 3.21
237 238 3.197333 AGATGGAGAGAACTGACATGTGG 59.803 47.826 1.15 0.00 0.00 4.17
238 239 1.625315 TGGAGAGAACTGACATGTGGG 59.375 52.381 1.15 0.00 0.00 4.61
239 240 1.625818 GGAGAGAACTGACATGTGGGT 59.374 52.381 1.15 0.00 0.00 4.51
240 241 2.354203 GGAGAGAACTGACATGTGGGTC 60.354 54.545 1.15 4.04 38.29 4.46
241 242 2.564947 GAGAGAACTGACATGTGGGTCT 59.435 50.000 13.73 13.73 38.61 3.85
242 243 3.764434 GAGAGAACTGACATGTGGGTCTA 59.236 47.826 13.80 0.00 38.61 2.59
243 244 3.766591 AGAGAACTGACATGTGGGTCTAG 59.233 47.826 13.80 1.95 38.61 2.43
244 245 2.834549 AGAACTGACATGTGGGTCTAGG 59.165 50.000 1.15 0.00 38.61 3.02
245 246 1.573108 ACTGACATGTGGGTCTAGGG 58.427 55.000 1.15 0.00 38.61 3.53
246 247 0.833287 CTGACATGTGGGTCTAGGGG 59.167 60.000 1.15 0.00 38.61 4.79
247 248 0.118346 TGACATGTGGGTCTAGGGGT 59.882 55.000 1.15 0.00 38.61 4.95
248 249 1.363280 TGACATGTGGGTCTAGGGGTA 59.637 52.381 1.15 0.00 38.61 3.69
249 250 2.022428 TGACATGTGGGTCTAGGGGTAT 60.022 50.000 1.15 0.00 38.61 2.73
250 251 3.046374 GACATGTGGGTCTAGGGGTATT 58.954 50.000 1.15 0.00 34.92 1.89
251 252 3.458487 GACATGTGGGTCTAGGGGTATTT 59.542 47.826 1.15 0.00 34.92 1.40
252 253 3.856206 ACATGTGGGTCTAGGGGTATTTT 59.144 43.478 0.00 0.00 0.00 1.82
253 254 5.041015 ACATGTGGGTCTAGGGGTATTTTA 58.959 41.667 0.00 0.00 0.00 1.52
254 255 5.674958 ACATGTGGGTCTAGGGGTATTTTAT 59.325 40.000 0.00 0.00 0.00 1.40
255 256 5.899631 TGTGGGTCTAGGGGTATTTTATC 57.100 43.478 0.00 0.00 0.00 1.75
256 257 5.290335 TGTGGGTCTAGGGGTATTTTATCA 58.710 41.667 0.00 0.00 0.00 2.15
257 258 5.914716 TGTGGGTCTAGGGGTATTTTATCAT 59.085 40.000 0.00 0.00 0.00 2.45
258 259 7.083628 TGTGGGTCTAGGGGTATTTTATCATA 58.916 38.462 0.00 0.00 0.00 2.15
259 260 7.742213 TGTGGGTCTAGGGGTATTTTATCATAT 59.258 37.037 0.00 0.00 0.00 1.78
260 261 9.275572 GTGGGTCTAGGGGTATTTTATCATATA 57.724 37.037 0.00 0.00 0.00 0.86
261 262 9.861919 TGGGTCTAGGGGTATTTTATCATATAA 57.138 33.333 0.00 0.00 0.00 0.98
268 269 9.975218 AGGGGTATTTTATCATATAACATGGTC 57.025 33.333 0.00 0.00 0.00 4.02
269 270 9.747898 GGGGTATTTTATCATATAACATGGTCA 57.252 33.333 0.00 0.00 0.00 4.02
275 276 9.607988 TTTTATCATATAACATGGTCAACGAGT 57.392 29.630 0.00 0.00 0.00 4.18
276 277 9.607988 TTTATCATATAACATGGTCAACGAGTT 57.392 29.630 0.00 0.00 0.00 3.01
277 278 9.607988 TTATCATATAACATGGTCAACGAGTTT 57.392 29.630 0.00 0.00 0.00 2.66
278 279 7.302350 TCATATAACATGGTCAACGAGTTTG 57.698 36.000 0.00 0.00 36.42 2.93
279 280 7.100409 TCATATAACATGGTCAACGAGTTTGA 58.900 34.615 0.00 0.00 42.26 2.69
280 281 5.862924 ATAACATGGTCAACGAGTTTGAG 57.137 39.130 0.00 0.00 45.23 3.02
285 286 2.932167 GTCAACGAGTTTGAGCTGAC 57.068 50.000 0.00 0.00 45.23 3.51
286 287 2.201732 GTCAACGAGTTTGAGCTGACA 58.798 47.619 0.00 0.00 45.23 3.58
287 288 2.607635 GTCAACGAGTTTGAGCTGACAA 59.392 45.455 0.00 0.00 45.23 3.18
288 289 3.248602 GTCAACGAGTTTGAGCTGACAAT 59.751 43.478 0.00 0.00 45.23 2.71
289 290 4.447724 GTCAACGAGTTTGAGCTGACAATA 59.552 41.667 0.00 0.00 45.23 1.90
290 291 5.050363 GTCAACGAGTTTGAGCTGACAATAA 60.050 40.000 0.00 0.00 45.23 1.40
291 292 4.992381 ACGAGTTTGAGCTGACAATAAC 57.008 40.909 0.00 0.00 0.00 1.89
292 293 3.428870 ACGAGTTTGAGCTGACAATAACG 59.571 43.478 0.00 0.00 0.00 3.18
293 294 3.722082 CGAGTTTGAGCTGACAATAACGC 60.722 47.826 0.00 0.00 0.00 4.84
294 295 3.403038 AGTTTGAGCTGACAATAACGCT 58.597 40.909 0.00 0.00 35.03 5.07
295 296 3.187227 AGTTTGAGCTGACAATAACGCTG 59.813 43.478 0.00 0.00 31.96 5.18
296 297 2.455674 TGAGCTGACAATAACGCTGT 57.544 45.000 0.00 0.00 31.96 4.40
297 298 2.766313 TGAGCTGACAATAACGCTGTT 58.234 42.857 0.00 0.02 31.96 3.16
298 299 3.138304 TGAGCTGACAATAACGCTGTTT 58.862 40.909 0.00 0.00 31.96 2.83
299 300 4.311606 TGAGCTGACAATAACGCTGTTTA 58.688 39.130 0.00 0.00 31.96 2.01
300 301 4.752604 TGAGCTGACAATAACGCTGTTTAA 59.247 37.500 0.00 0.00 31.96 1.52
301 302 5.411361 TGAGCTGACAATAACGCTGTTTAAT 59.589 36.000 0.00 0.00 31.96 1.40
302 303 5.631026 AGCTGACAATAACGCTGTTTAATG 58.369 37.500 0.00 1.09 0.00 1.90
303 304 5.411361 AGCTGACAATAACGCTGTTTAATGA 59.589 36.000 0.00 0.00 0.00 2.57
304 305 5.508224 GCTGACAATAACGCTGTTTAATGAC 59.492 40.000 0.00 0.33 0.00 3.06
305 306 6.546972 TGACAATAACGCTGTTTAATGACA 57.453 33.333 0.00 2.33 0.00 3.58
306 307 7.139896 TGACAATAACGCTGTTTAATGACAT 57.860 32.000 0.00 0.00 0.00 3.06
307 308 7.589395 TGACAATAACGCTGTTTAATGACATT 58.411 30.769 5.87 5.87 0.00 2.71
308 309 8.079203 TGACAATAACGCTGTTTAATGACATTT 58.921 29.630 5.89 0.00 0.00 2.32
309 310 8.810652 ACAATAACGCTGTTTAATGACATTTT 57.189 26.923 5.89 0.00 0.00 1.82
310 311 9.255304 ACAATAACGCTGTTTAATGACATTTTT 57.745 25.926 5.89 0.00 0.00 1.94
311 312 9.514822 CAATAACGCTGTTTAATGACATTTTTG 57.485 29.630 5.89 0.00 0.00 2.44
312 313 9.469807 AATAACGCTGTTTAATGACATTTTTGA 57.530 25.926 5.89 0.00 0.00 2.69
313 314 6.991485 ACGCTGTTTAATGACATTTTTGAG 57.009 33.333 5.89 0.04 0.00 3.02
314 315 5.402270 ACGCTGTTTAATGACATTTTTGAGC 59.598 36.000 5.89 8.53 0.00 4.26
315 316 5.401972 CGCTGTTTAATGACATTTTTGAGCA 59.598 36.000 5.89 0.00 0.00 4.26
316 317 6.074409 CGCTGTTTAATGACATTTTTGAGCAA 60.074 34.615 5.89 0.00 0.00 3.91
317 318 7.516470 CGCTGTTTAATGACATTTTTGAGCAAA 60.516 33.333 5.89 0.00 0.00 3.68
318 319 7.583762 GCTGTTTAATGACATTTTTGAGCAAAC 59.416 33.333 5.89 9.25 0.00 2.93
319 320 8.484641 TGTTTAATGACATTTTTGAGCAAACA 57.515 26.923 14.66 14.66 31.75 2.83
320 321 9.107177 TGTTTAATGACATTTTTGAGCAAACAT 57.893 25.926 14.66 0.00 29.87 2.71
321 322 9.584839 GTTTAATGACATTTTTGAGCAAACATC 57.415 29.630 5.89 0.00 0.00 3.06
322 323 9.545105 TTTAATGACATTTTTGAGCAAACATCT 57.455 25.926 5.89 0.00 0.00 2.90
325 326 9.715121 AATGACATTTTTGAGCAAACATCTAAT 57.285 25.926 0.00 0.00 0.00 1.73
326 327 8.523523 TGACATTTTTGAGCAAACATCTAATG 57.476 30.769 12.32 12.32 33.30 1.90
327 328 7.599621 TGACATTTTTGAGCAAACATCTAATGG 59.400 33.333 15.82 4.92 32.25 3.16
328 329 7.669427 ACATTTTTGAGCAAACATCTAATGGA 58.331 30.769 15.82 0.00 32.25 3.41
329 330 8.149647 ACATTTTTGAGCAAACATCTAATGGAA 58.850 29.630 15.82 0.00 32.25 3.53
330 331 7.945033 TTTTTGAGCAAACATCTAATGGAAC 57.055 32.000 0.00 0.00 33.60 3.62
371 372 9.565213 GATATCTAATGGTATTTTTGAGCATGC 57.435 33.333 10.51 10.51 35.29 4.06
372 373 6.772360 TCTAATGGTATTTTTGAGCATGCA 57.228 33.333 21.98 0.00 35.29 3.96
373 374 7.350744 TCTAATGGTATTTTTGAGCATGCAT 57.649 32.000 21.98 5.78 35.29 3.96
374 375 7.428020 TCTAATGGTATTTTTGAGCATGCATC 58.572 34.615 21.98 14.60 35.29 3.91
375 376 5.864418 ATGGTATTTTTGAGCATGCATCT 57.136 34.783 21.98 0.00 33.87 2.90
376 377 5.252969 TGGTATTTTTGAGCATGCATCTC 57.747 39.130 21.98 9.59 0.00 2.75
377 378 4.705991 TGGTATTTTTGAGCATGCATCTCA 59.294 37.500 21.98 18.87 38.67 3.27
378 379 5.039333 GGTATTTTTGAGCATGCATCTCAC 58.961 41.667 21.98 12.53 39.99 3.51
379 380 4.794278 ATTTTTGAGCATGCATCTCACA 57.206 36.364 21.98 15.37 39.99 3.58
380 381 3.842732 TTTTGAGCATGCATCTCACAG 57.157 42.857 21.98 2.38 39.99 3.66
381 382 2.773993 TTGAGCATGCATCTCACAGA 57.226 45.000 21.98 10.02 39.99 3.41
382 383 2.773993 TGAGCATGCATCTCACAGAA 57.226 45.000 21.98 3.24 35.81 3.02
383 384 2.353323 TGAGCATGCATCTCACAGAAC 58.647 47.619 21.98 0.00 35.81 3.01
384 385 2.289819 TGAGCATGCATCTCACAGAACA 60.290 45.455 21.98 0.00 35.81 3.18
385 386 2.745821 GAGCATGCATCTCACAGAACAA 59.254 45.455 21.98 0.00 0.00 2.83
386 387 3.353557 AGCATGCATCTCACAGAACAAT 58.646 40.909 21.98 0.00 0.00 2.71
387 388 3.128764 AGCATGCATCTCACAGAACAATG 59.871 43.478 21.98 0.00 0.00 2.82
388 389 3.128068 GCATGCATCTCACAGAACAATGA 59.872 43.478 14.21 0.00 0.00 2.57
389 390 4.659088 CATGCATCTCACAGAACAATGAC 58.341 43.478 0.00 0.00 0.00 3.06
390 391 3.742385 TGCATCTCACAGAACAATGACA 58.258 40.909 0.00 0.00 0.00 3.58
391 392 4.329392 TGCATCTCACAGAACAATGACAT 58.671 39.130 0.00 0.00 0.00 3.06
392 393 4.763279 TGCATCTCACAGAACAATGACATT 59.237 37.500 0.00 0.00 0.00 2.71
393 394 5.242171 TGCATCTCACAGAACAATGACATTT 59.758 36.000 0.00 0.00 0.00 2.32
394 395 6.154445 GCATCTCACAGAACAATGACATTTT 58.846 36.000 0.00 0.00 0.00 1.82
395 396 6.089016 GCATCTCACAGAACAATGACATTTTG 59.911 38.462 0.00 0.00 0.00 2.44
396 397 6.940831 TCTCACAGAACAATGACATTTTGA 57.059 33.333 0.00 0.00 0.00 2.69
397 398 6.962686 TCTCACAGAACAATGACATTTTGAG 58.037 36.000 0.00 4.62 0.00 3.02
398 399 5.522456 TCACAGAACAATGACATTTTGAGC 58.478 37.500 0.00 0.00 0.00 4.26
399 400 5.067544 TCACAGAACAATGACATTTTGAGCA 59.932 36.000 0.00 0.00 0.00 4.26
400 401 5.401376 CACAGAACAATGACATTTTGAGCAG 59.599 40.000 0.00 0.00 0.00 4.24
401 402 5.068198 ACAGAACAATGACATTTTGAGCAGT 59.932 36.000 0.00 0.00 0.00 4.40
402 403 5.981315 CAGAACAATGACATTTTGAGCAGTT 59.019 36.000 0.00 0.00 0.00 3.16
403 404 5.981315 AGAACAATGACATTTTGAGCAGTTG 59.019 36.000 0.00 0.00 0.00 3.16
404 405 5.266733 ACAATGACATTTTGAGCAGTTGT 57.733 34.783 0.00 0.00 0.00 3.32
405 406 6.389830 ACAATGACATTTTGAGCAGTTGTA 57.610 33.333 0.00 0.00 0.00 2.41
406 407 6.985117 ACAATGACATTTTGAGCAGTTGTAT 58.015 32.000 0.00 0.00 0.00 2.29
407 408 7.436118 ACAATGACATTTTGAGCAGTTGTATT 58.564 30.769 0.00 0.00 0.00 1.89
408 409 7.927629 ACAATGACATTTTGAGCAGTTGTATTT 59.072 29.630 0.00 0.00 0.00 1.40
409 410 8.767085 CAATGACATTTTGAGCAGTTGTATTTT 58.233 29.630 0.00 0.00 0.00 1.82
410 411 7.928908 TGACATTTTGAGCAGTTGTATTTTC 57.071 32.000 0.00 0.00 0.00 2.29
411 412 7.715657 TGACATTTTGAGCAGTTGTATTTTCT 58.284 30.769 0.00 0.00 0.00 2.52
412 413 8.845227 TGACATTTTGAGCAGTTGTATTTTCTA 58.155 29.630 0.00 0.00 0.00 2.10
413 414 9.677567 GACATTTTGAGCAGTTGTATTTTCTAA 57.322 29.630 0.00 0.00 0.00 2.10
446 447 9.823647 AACTGAATAATGAGACACTACTAATGG 57.176 33.333 0.00 0.00 0.00 3.16
447 448 8.982723 ACTGAATAATGAGACACTACTAATGGT 58.017 33.333 0.00 0.00 0.00 3.55
529 533 1.360192 GCTGCGCAGAAACCAAAGT 59.640 52.632 40.21 0.00 0.00 2.66
550 554 1.679559 GCCAAATGTCCATCCCTGCC 61.680 60.000 0.00 0.00 0.00 4.85
553 557 0.324645 AAATGTCCATCCCTGCCACC 60.325 55.000 0.00 0.00 0.00 4.61
554 558 1.508667 AATGTCCATCCCTGCCACCA 61.509 55.000 0.00 0.00 0.00 4.17
555 559 2.044946 GTCCATCCCTGCCACCAC 60.045 66.667 0.00 0.00 0.00 4.16
556 560 3.716195 TCCATCCCTGCCACCACG 61.716 66.667 0.00 0.00 0.00 4.94
578 582 2.997315 GCCCAGGGCTCCCAAAAC 60.997 66.667 24.99 0.00 46.69 2.43
580 584 2.083715 CCCAGGGCTCCCAAAACTA 58.916 57.895 7.82 0.00 38.92 2.24
581 585 0.323451 CCCAGGGCTCCCAAAACTAC 60.323 60.000 7.82 0.00 38.92 2.73
636 665 2.911143 GTCCCCTCGCACCATCAT 59.089 61.111 0.00 0.00 0.00 2.45
638 667 1.688884 TCCCCTCGCACCATCATCA 60.689 57.895 0.00 0.00 0.00 3.07
640 669 1.097547 CCCCTCGCACCATCATCAAC 61.098 60.000 0.00 0.00 0.00 3.18
641 670 1.097547 CCCTCGCACCATCATCAACC 61.098 60.000 0.00 0.00 0.00 3.77
642 671 0.392863 CCTCGCACCATCATCAACCA 60.393 55.000 0.00 0.00 0.00 3.67
645 674 0.179156 CGCACCATCATCAACCAAGC 60.179 55.000 0.00 0.00 0.00 4.01
646 675 0.889994 GCACCATCATCAACCAAGCA 59.110 50.000 0.00 0.00 0.00 3.91
647 676 1.273048 GCACCATCATCAACCAAGCAA 59.727 47.619 0.00 0.00 0.00 3.91
648 677 2.673043 GCACCATCATCAACCAAGCAAG 60.673 50.000 0.00 0.00 0.00 4.01
649 678 1.547372 ACCATCATCAACCAAGCAAGC 59.453 47.619 0.00 0.00 0.00 4.01
650 679 1.546923 CCATCATCAACCAAGCAAGCA 59.453 47.619 0.00 0.00 0.00 3.91
651 680 2.416836 CCATCATCAACCAAGCAAGCAG 60.417 50.000 0.00 0.00 0.00 4.24
652 681 1.985473 TCATCAACCAAGCAAGCAGT 58.015 45.000 0.00 0.00 0.00 4.40
673 702 0.955428 AGTCATTGCACAATCGCCGT 60.955 50.000 0.00 0.00 0.00 5.68
674 703 0.521242 GTCATTGCACAATCGCCGTC 60.521 55.000 0.00 0.00 0.00 4.79
819 850 1.680314 CTGCCCTGCCTCTTTTCCC 60.680 63.158 0.00 0.00 0.00 3.97
830 861 0.549169 TCTTTTCCCCCTCCGACCAT 60.549 55.000 0.00 0.00 0.00 3.55
880 911 2.414785 CGTTGCCACATAAGCCCCC 61.415 63.158 0.00 0.00 0.00 5.40
1453 1512 2.622962 CCCGCCTTTTTGGTCGTCC 61.623 63.158 0.00 0.00 38.35 4.79
1460 1519 0.671163 TTTTTGGTCGTCCCGATCGG 60.671 55.000 27.65 27.65 40.17 4.18
1499 1558 2.610433 TGCGACAGAGTGATTGATGAC 58.390 47.619 0.00 0.00 0.00 3.06
1500 1559 1.929836 GCGACAGAGTGATTGATGACC 59.070 52.381 0.00 0.00 0.00 4.02
1570 1630 2.888414 GGGAGGAAGAAGATAGACGGAG 59.112 54.545 0.00 0.00 0.00 4.63
1638 1698 1.345089 CTGGAGGAGATGATGCAGGAG 59.655 57.143 0.00 0.00 31.83 3.69
1887 1947 2.456119 CGGCGCCAATCTGTCAGAC 61.456 63.158 28.98 0.00 0.00 3.51
1911 1971 0.172803 GTAACGCGTCCAGTCCAGAT 59.827 55.000 14.44 0.00 0.00 2.90
1924 1984 4.321750 CCAGTCCAGATTAACACGTACACT 60.322 45.833 0.00 0.00 0.00 3.55
1962 2022 1.878953 ACCGTGGTGAACTTGTGATC 58.121 50.000 0.00 0.00 0.00 2.92
2007 2067 2.838393 GCATTTGCGCGAACGATGC 61.838 57.895 13.41 15.20 43.93 3.91
2061 2121 2.109229 AGATGGAGGGGATGTCGAAT 57.891 50.000 0.00 0.00 0.00 3.34
2073 2133 3.264159 TCGAATGGCATGCGCGAG 61.264 61.111 23.11 0.00 39.92 5.03
2148 2208 2.045536 GGCTGCCAGTCCAGGAAG 60.046 66.667 15.17 0.00 37.39 3.46
2357 2417 5.588648 TGCTCATAATACTGTTTTAGCCACC 59.411 40.000 0.00 0.00 0.00 4.61
2366 2426 4.715523 TTAGCCACCACGCCCAGC 62.716 66.667 0.00 0.00 0.00 4.85
2384 2444 4.943822 GCTCCACTAGCCCACTTC 57.056 61.111 0.00 0.00 46.25 3.01
2435 2495 4.181578 CCGAAATCAAGATTAGTGTCCGT 58.818 43.478 0.00 0.00 0.00 4.69
2436 2496 4.267928 CCGAAATCAAGATTAGTGTCCGTC 59.732 45.833 0.00 0.00 0.00 4.79
2437 2497 5.103000 CGAAATCAAGATTAGTGTCCGTCT 58.897 41.667 0.00 0.00 0.00 4.18
2439 2499 6.750501 CGAAATCAAGATTAGTGTCCGTCTTA 59.249 38.462 0.00 0.00 30.29 2.10
2440 2500 7.043986 CGAAATCAAGATTAGTGTCCGTCTTAG 60.044 40.741 0.00 0.00 30.29 2.18
2441 2501 4.995124 TCAAGATTAGTGTCCGTCTTAGC 58.005 43.478 0.00 0.00 30.29 3.09
2453 2518 2.448219 CGTCTTAGCCAGCGTAGTTAC 58.552 52.381 0.00 0.00 0.00 2.50
2457 2522 4.335037 GTCTTAGCCAGCGTAGTTACTACT 59.665 45.833 18.76 3.42 35.06 2.57
2469 2551 6.505420 GCGTAGTTACTACTTTGCGTGATTAC 60.505 42.308 18.76 0.00 35.06 1.89
2475 2557 5.779922 ACTACTTTGCGTGATTACTCTTGA 58.220 37.500 0.00 0.00 0.00 3.02
2508 2590 0.037605 GTTGACTCGGGTGGGTACAG 60.038 60.000 0.00 0.00 0.00 2.74
2509 2591 1.823169 TTGACTCGGGTGGGTACAGC 61.823 60.000 0.00 0.00 44.19 4.40
2566 2648 0.541392 CACGATCAGATTGGGTCCCA 59.459 55.000 6.47 6.47 0.00 4.37
2579 2661 1.410224 GGGTCCCATTTGTCTCATCCC 60.410 57.143 1.78 0.00 0.00 3.85
2654 2737 0.251033 TGCAATGCAAGCCTGAGTCT 60.251 50.000 5.01 0.00 34.76 3.24
2715 2812 5.477291 TCGTAGGGAGATGAGTAATTGATCC 59.523 44.000 0.00 0.00 0.00 3.36
2720 2817 5.415221 GGAGATGAGTAATTGATCCGATCC 58.585 45.833 5.91 0.00 0.00 3.36
2759 2856 6.452494 GATCATTCATCCATCCATCCAATC 57.548 41.667 0.00 0.00 0.00 2.67
2760 2857 4.669700 TCATTCATCCATCCATCCAATCC 58.330 43.478 0.00 0.00 0.00 3.01
2761 2858 4.106663 TCATTCATCCATCCATCCAATCCA 59.893 41.667 0.00 0.00 0.00 3.41
2783 2888 1.078426 ATCGGCAGCTACCCAACAC 60.078 57.895 0.00 0.00 0.00 3.32
2784 2889 2.852495 ATCGGCAGCTACCCAACACG 62.852 60.000 0.00 0.00 0.00 4.49
2786 2891 1.741770 GGCAGCTACCCAACACGAG 60.742 63.158 0.00 0.00 0.00 4.18
2787 2892 1.292223 GCAGCTACCCAACACGAGA 59.708 57.895 0.00 0.00 0.00 4.04
2788 2893 0.737715 GCAGCTACCCAACACGAGAG 60.738 60.000 0.00 0.00 0.00 3.20
2789 2894 0.888619 CAGCTACCCAACACGAGAGA 59.111 55.000 0.00 0.00 0.00 3.10
2790 2895 1.478510 CAGCTACCCAACACGAGAGAT 59.521 52.381 0.00 0.00 0.00 2.75
2791 2896 2.093973 CAGCTACCCAACACGAGAGATT 60.094 50.000 0.00 0.00 0.00 2.40
2794 2921 4.406003 AGCTACCCAACACGAGAGATTAAT 59.594 41.667 0.00 0.00 0.00 1.40
2804 2931 5.585047 ACACGAGAGATTAATAGCAAAACCC 59.415 40.000 0.00 0.00 0.00 4.11
2837 2966 1.470979 GGATTGATACGACGGCAGTGT 60.471 52.381 0.00 0.00 0.00 3.55
2858 2987 5.929992 GTGTATGCTTCTGTTAACCACTGTA 59.070 40.000 2.48 0.00 0.00 2.74
2872 3001 2.303022 CCACTGTAGGAGTTGATGTGGT 59.697 50.000 0.00 0.00 38.75 4.16
2906 3035 2.437413 GGGCCATTCTTCGTTTCTTCT 58.563 47.619 4.39 0.00 0.00 2.85
2910 3039 4.142881 GGCCATTCTTCGTTTCTTCTACAC 60.143 45.833 0.00 0.00 0.00 2.90
2913 3042 6.535508 GCCATTCTTCGTTTCTTCTACACTAT 59.464 38.462 0.00 0.00 0.00 2.12
2914 3043 7.705325 GCCATTCTTCGTTTCTTCTACACTATA 59.295 37.037 0.00 0.00 0.00 1.31
2915 3044 9.239002 CCATTCTTCGTTTCTTCTACACTATAG 57.761 37.037 0.00 0.00 0.00 1.31
3060 3227 0.542938 GGCCAAGGCTTCTCCCTTTT 60.543 55.000 11.40 0.00 42.48 2.27
3128 3295 2.481952 CTGCTGCCTTTCTTGTACTGTC 59.518 50.000 0.00 0.00 0.00 3.51
3185 3352 9.527157 TCCTCTGTCAATTTTAAATCATTACCA 57.473 29.630 0.00 0.00 0.00 3.25
3200 3367 5.302360 TCATTACCACAGGTTGTGTTCTAC 58.698 41.667 8.25 0.00 46.45 2.59
3236 3404 5.161358 TGTTCTAGTTCTATGAACTGCGTG 58.839 41.667 19.47 9.45 40.27 5.34
3277 3448 8.607713 TGGTTGGTTATGTTCTAGAGGAAAATA 58.392 33.333 0.00 0.00 34.09 1.40
3319 3644 2.033299 ACTTTGGTGCTGAAATGTGACG 59.967 45.455 0.00 0.00 0.00 4.35
3330 3655 1.876497 AATGTGACGTTGCCATGGCC 61.876 55.000 33.44 18.20 41.09 5.36
3338 3663 0.814457 GTTGCCATGGCCGATTGTTA 59.186 50.000 33.44 9.85 41.09 2.41
3498 3823 4.649088 TGTATGACCAGTGAATAGGACG 57.351 45.455 0.00 0.00 0.00 4.79
3526 3851 3.381590 GCCCACAACAAGAAGAAGAAAGT 59.618 43.478 0.00 0.00 0.00 2.66
3687 4017 3.051327 CGCATTTTCATTGCACTGTCAA 58.949 40.909 3.77 0.00 40.14 3.18
3773 4138 6.025896 GCATTCACAGATCATACAGTTTGTG 58.974 40.000 0.00 0.00 37.77 3.33
3782 4147 5.733226 TCATACAGTTTGTGATTATGGCG 57.267 39.130 0.00 0.00 0.00 5.69
3815 4180 4.079787 ACCATTATAGGCTTTCAGCTTGGA 60.080 41.667 0.00 0.00 41.99 3.53
3818 4183 1.755179 TAGGCTTTCAGCTTGGATGC 58.245 50.000 0.00 0.00 41.99 3.91
3926 4294 5.268387 TGGCCCAAAGATGTTACATTACAT 58.732 37.500 0.00 0.00 41.30 2.29
3940 4308 4.740268 ACATTACATGCATGCTTTGAGTG 58.260 39.130 26.53 16.40 0.00 3.51
3997 4366 9.875691 AAATTATGTCCTGCTAAAATCTTTTCC 57.124 29.630 0.00 0.00 0.00 3.13
4101 4470 0.610174 AGCAAGTGAGAGCGGAATCA 59.390 50.000 0.00 0.00 35.48 2.57
4260 4629 4.752101 AGTAGCCTCTAATTATGCTTTGCG 59.248 41.667 8.90 0.00 35.34 4.85
4353 4770 7.269316 TGCATCGTCCTTTACATTACTAATGA 58.731 34.615 14.58 0.00 41.46 2.57
4395 4812 9.525826 ACTTTTGGAATTCAGAGAAAGATGTAT 57.474 29.630 19.75 4.18 29.80 2.29
4397 4814 7.776933 TTGGAATTCAGAGAAAGATGTATCG 57.223 36.000 7.93 0.00 0.00 2.92
4443 5871 7.963532 ACTCATTTCAAGTAGGAGTTCTGTTA 58.036 34.615 0.00 0.00 35.41 2.41
4480 5908 9.442047 AGATTACAACCTTGATTTCTTACTCTG 57.558 33.333 0.00 0.00 0.00 3.35
4506 5937 8.123575 GGAGTTACTTCTCTCTGAAAACAAAAC 58.876 37.037 0.00 0.00 33.79 2.43
4603 6035 6.093633 AGTCACTGAAATATTTACCTTTCGGC 59.906 38.462 0.00 0.00 40.04 5.54
4606 6038 5.124936 ACTGAAATATTTACCTTTCGGCCAC 59.875 40.000 2.24 0.00 40.04 5.01
4625 6057 5.063817 GGCCACAATATTTCAGCAATTTCAC 59.936 40.000 0.00 0.00 0.00 3.18
4635 6067 6.539649 TTCAGCAATTTCACTAGTACACAC 57.460 37.500 0.00 0.00 0.00 3.82
4640 6072 6.426937 AGCAATTTCACTAGTACACACGAATT 59.573 34.615 0.00 0.00 0.00 2.17
4644 6076 5.952526 TCACTAGTACACACGAATTCAGA 57.047 39.130 6.22 0.00 0.00 3.27
4699 6132 6.757947 CATGTGAACATTTTGGTCTTTTGACT 59.242 34.615 0.00 0.00 40.86 3.41
4712 6145 1.098869 TTTGACTGAAACGCAAGCCA 58.901 45.000 0.00 0.00 45.62 4.75
4718 6151 4.202060 TGACTGAAACGCAAGCCAAAATAA 60.202 37.500 0.00 0.00 45.62 1.40
4750 6183 2.489329 CTGAATTTCGGTTGGTGCTGAT 59.511 45.455 0.00 0.00 0.00 2.90
4751 6184 2.890311 TGAATTTCGGTTGGTGCTGATT 59.110 40.909 0.00 0.00 0.00 2.57
4815 6248 9.530633 AATGACGAACAAGTCTTTATATACTCC 57.469 33.333 0.00 0.00 41.47 3.85
4868 6302 7.531857 TTGCAGTTTTATTTGGAATGGACTA 57.468 32.000 0.00 0.00 0.00 2.59
4877 6311 8.821686 TTATTTGGAATGGACTACATGTTCAT 57.178 30.769 2.30 0.79 46.41 2.57
4886 6320 2.840038 ACTACATGTTCATGGCTCTGGA 59.160 45.455 2.30 0.00 0.00 3.86
4887 6321 2.119801 ACATGTTCATGGCTCTGGAC 57.880 50.000 15.71 0.00 0.00 4.02
4901 6336 4.322567 GCTCTGGACAAATCTCAGTTTCT 58.677 43.478 0.00 0.00 0.00 2.52
4962 6401 2.552315 CACACCCTTTCGTATTGCTTGT 59.448 45.455 0.00 0.00 0.00 3.16
5010 6449 4.826733 TGTTCACATTAAAGCCAGTGATGT 59.173 37.500 0.00 0.00 40.32 3.06
5011 6450 5.301551 TGTTCACATTAAAGCCAGTGATGTT 59.698 36.000 0.00 0.00 40.32 2.71
5012 6451 5.375417 TCACATTAAAGCCAGTGATGTTG 57.625 39.130 0.00 0.00 36.20 3.33
5013 6452 4.826733 TCACATTAAAGCCAGTGATGTTGT 59.173 37.500 0.00 0.00 36.20 3.32
5014 6453 5.301551 TCACATTAAAGCCAGTGATGTTGTT 59.698 36.000 0.00 0.00 36.20 2.83
5015 6454 6.488344 TCACATTAAAGCCAGTGATGTTGTTA 59.512 34.615 0.00 0.00 36.20 2.41
5016 6455 7.013750 TCACATTAAAGCCAGTGATGTTGTTAA 59.986 33.333 0.00 0.00 36.20 2.01
5017 6456 7.114811 CACATTAAAGCCAGTGATGTTGTTAAC 59.885 37.037 0.00 0.00 33.99 2.01
5129 6569 1.135141 CAGAAGAAGGTCTCGGAGCTG 60.135 57.143 0.00 0.00 39.62 4.24
5153 6593 0.318445 GCAAGCTGCACACCTTCAAG 60.318 55.000 1.02 0.00 44.26 3.02
5184 6624 4.619320 CCCCAAACCTGCCCAGCA 62.619 66.667 0.00 0.00 36.92 4.41
5415 6877 0.908198 AGCACTGACCATCCTCTTCC 59.092 55.000 0.00 0.00 0.00 3.46
5434 6897 2.622962 GGAACCAAGGTTTCCGGCG 61.623 63.158 5.87 0.00 38.60 6.46
5627 7090 0.889638 TCGAGGAATAGGCGCGATCT 60.890 55.000 12.10 9.21 0.00 2.75
5800 7265 9.809096 AGTGATGAACTACAAGTACAATGATAG 57.191 33.333 5.77 6.33 37.36 2.08
5803 7268 9.265901 GATGAACTACAAGTACAATGATAGCAT 57.734 33.333 5.77 0.00 35.92 3.79
5808 7273 8.140628 ACTACAAGTACAATGATAGCATCAGAG 58.859 37.037 0.00 3.36 43.53 3.35
5829 7294 3.447229 AGGCTTTGTTGGCGCTAAATATT 59.553 39.130 8.12 0.00 37.59 1.28
5830 7295 4.081697 AGGCTTTGTTGGCGCTAAATATTT 60.082 37.500 8.12 5.89 37.59 1.40
5907 7372 2.187946 GCACACGATCCTCTGGGG 59.812 66.667 0.00 0.00 0.00 4.96
6064 7529 1.073199 CCACCACGCCCTCTTCTTT 59.927 57.895 0.00 0.00 0.00 2.52
6065 7530 0.955919 CCACCACGCCCTCTTCTTTC 60.956 60.000 0.00 0.00 0.00 2.62
6066 7531 0.955919 CACCACGCCCTCTTCTTTCC 60.956 60.000 0.00 0.00 0.00 3.13
6217 7685 2.751688 GCGGTGGTGGTAAGGGAA 59.248 61.111 0.00 0.00 0.00 3.97
6237 7705 2.411701 CATTGCATGGAGGCTGCG 59.588 61.111 0.35 0.00 42.62 5.18
6238 7706 2.116533 CATTGCATGGAGGCTGCGA 61.117 57.895 0.35 0.00 42.62 5.10
6239 7707 1.152819 ATTGCATGGAGGCTGCGAT 60.153 52.632 0.35 0.00 42.62 4.58
6240 7708 1.170919 ATTGCATGGAGGCTGCGATC 61.171 55.000 0.35 0.00 39.05 3.69
6241 7709 2.976903 GCATGGAGGCTGCGATCC 60.977 66.667 13.82 13.82 36.05 3.36
6242 7710 2.827423 CATGGAGGCTGCGATCCT 59.173 61.111 19.36 0.36 36.50 3.24
6243 7711 1.597302 CATGGAGGCTGCGATCCTG 60.597 63.158 19.36 12.78 36.50 3.86
6244 7712 1.763655 ATGGAGGCTGCGATCCTGA 60.764 57.895 19.36 4.98 36.50 3.86
6245 7713 1.756408 ATGGAGGCTGCGATCCTGAG 61.756 60.000 19.36 0.00 36.50 3.35
6257 7725 2.326992 TCCTGAGGAGGAGGAGGAG 58.673 63.158 0.00 0.00 44.13 3.69
6259 7727 1.227249 CCTGAGGAGGAGGAGGAGTA 58.773 60.000 0.00 0.00 42.93 2.59
6271 7739 2.856231 AGGAGGAGTAGAGGTGTGATCT 59.144 50.000 0.00 0.00 0.00 2.75
6272 7740 4.048600 AGGAGGAGTAGAGGTGTGATCTA 58.951 47.826 0.00 0.00 0.00 1.98
6273 7741 4.667858 AGGAGGAGTAGAGGTGTGATCTAT 59.332 45.833 0.00 0.00 32.15 1.98
6275 7743 4.735369 AGGAGTAGAGGTGTGATCTATGG 58.265 47.826 0.00 0.00 32.15 2.74
6276 7744 4.169068 AGGAGTAGAGGTGTGATCTATGGT 59.831 45.833 0.00 0.00 32.15 3.55
6277 7745 4.279671 GGAGTAGAGGTGTGATCTATGGTG 59.720 50.000 0.00 0.00 32.15 4.17
6278 7746 4.873010 AGTAGAGGTGTGATCTATGGTGT 58.127 43.478 0.00 0.00 32.15 4.16
6279 7747 6.014771 AGTAGAGGTGTGATCTATGGTGTA 57.985 41.667 0.00 0.00 32.15 2.90
6281 7749 7.069986 AGTAGAGGTGTGATCTATGGTGTATT 58.930 38.462 0.00 0.00 32.15 1.89
6282 7750 6.166984 AGAGGTGTGATCTATGGTGTATTG 57.833 41.667 0.00 0.00 0.00 1.90
6283 7751 5.070981 AGAGGTGTGATCTATGGTGTATTGG 59.929 44.000 0.00 0.00 0.00 3.16
6284 7752 4.721776 AGGTGTGATCTATGGTGTATTGGT 59.278 41.667 0.00 0.00 0.00 3.67
6285 7753 4.816385 GGTGTGATCTATGGTGTATTGGTG 59.184 45.833 0.00 0.00 0.00 4.17
6286 7754 5.428253 GTGTGATCTATGGTGTATTGGTGT 58.572 41.667 0.00 0.00 0.00 4.16
6287 7755 5.523916 GTGTGATCTATGGTGTATTGGTGTC 59.476 44.000 0.00 0.00 0.00 3.67
6299 7767 5.938125 GTGTATTGGTGTCTATGTGGAGTTT 59.062 40.000 0.00 0.00 0.00 2.66
6365 7833 1.141053 AGGGAAGACAGTGACAACCAC 59.859 52.381 0.00 0.00 46.03 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.663702 ACAGTTCGGCGAAGTTCGG 60.664 57.895 26.14 17.63 40.84 4.30
5 6 1.487231 CACAGTTCGGCGAAGTTCG 59.513 57.895 26.14 20.87 43.89 3.95
6 7 1.204312 GCACAGTTCGGCGAAGTTC 59.796 57.895 26.14 13.55 0.00 3.01
7 8 2.251642 GGCACAGTTCGGCGAAGTT 61.252 57.895 26.14 13.55 0.00 2.66
8 9 2.665185 GGCACAGTTCGGCGAAGT 60.665 61.111 24.41 23.86 0.00 3.01
13 14 0.039527 AAATTTCGGCACAGTTCGGC 60.040 50.000 0.00 0.00 0.00 5.54
14 15 1.001815 ACAAATTTCGGCACAGTTCGG 60.002 47.619 0.00 0.00 0.00 4.30
15 16 2.399396 ACAAATTTCGGCACAGTTCG 57.601 45.000 0.00 0.00 0.00 3.95
16 17 6.608610 AGTATAACAAATTTCGGCACAGTTC 58.391 36.000 0.00 0.00 0.00 3.01
17 18 6.569179 AGTATAACAAATTTCGGCACAGTT 57.431 33.333 0.00 0.00 0.00 3.16
18 19 6.569179 AAGTATAACAAATTTCGGCACAGT 57.431 33.333 0.00 0.00 0.00 3.55
19 20 7.867445 AAAAGTATAACAAATTTCGGCACAG 57.133 32.000 0.00 0.00 0.00 3.66
20 21 8.138712 AGAAAAAGTATAACAAATTTCGGCACA 58.861 29.630 0.00 0.00 33.28 4.57
21 22 8.515473 AGAAAAAGTATAACAAATTTCGGCAC 57.485 30.769 0.00 0.00 33.28 5.01
22 23 9.535878 AAAGAAAAAGTATAACAAATTTCGGCA 57.464 25.926 0.00 0.00 33.28 5.69
35 36 9.654417 GGCGCGATTAAATAAAGAAAAAGTATA 57.346 29.630 12.10 0.00 0.00 1.47
36 37 8.403236 AGGCGCGATTAAATAAAGAAAAAGTAT 58.597 29.630 12.10 0.00 0.00 2.12
37 38 7.694784 CAGGCGCGATTAAATAAAGAAAAAGTA 59.305 33.333 12.10 0.00 0.00 2.24
38 39 6.526674 CAGGCGCGATTAAATAAAGAAAAAGT 59.473 34.615 12.10 0.00 0.00 2.66
39 40 6.020678 CCAGGCGCGATTAAATAAAGAAAAAG 60.021 38.462 12.10 0.00 0.00 2.27
40 41 5.802956 CCAGGCGCGATTAAATAAAGAAAAA 59.197 36.000 12.10 0.00 0.00 1.94
41 42 5.336744 CCAGGCGCGATTAAATAAAGAAAA 58.663 37.500 12.10 0.00 0.00 2.29
42 43 4.201970 CCCAGGCGCGATTAAATAAAGAAA 60.202 41.667 12.10 0.00 0.00 2.52
43 44 3.314080 CCCAGGCGCGATTAAATAAAGAA 59.686 43.478 12.10 0.00 0.00 2.52
44 45 2.875933 CCCAGGCGCGATTAAATAAAGA 59.124 45.455 12.10 0.00 0.00 2.52
45 46 2.031157 CCCCAGGCGCGATTAAATAAAG 60.031 50.000 12.10 0.00 0.00 1.85
46 47 1.950909 CCCCAGGCGCGATTAAATAAA 59.049 47.619 12.10 0.00 0.00 1.40
47 48 1.600023 CCCCAGGCGCGATTAAATAA 58.400 50.000 12.10 0.00 0.00 1.40
48 49 0.250553 CCCCCAGGCGCGATTAAATA 60.251 55.000 12.10 0.00 0.00 1.40
49 50 1.528309 CCCCCAGGCGCGATTAAAT 60.528 57.895 12.10 0.00 0.00 1.40
50 51 2.124487 CCCCCAGGCGCGATTAAA 60.124 61.111 12.10 0.00 0.00 1.52
51 52 3.404438 ACCCCCAGGCGCGATTAA 61.404 61.111 12.10 0.00 36.11 1.40
52 53 4.169696 CACCCCCAGGCGCGATTA 62.170 66.667 12.10 0.00 36.11 1.75
86 87 3.961414 GGGCGAGTTGGTCCCCAA 61.961 66.667 0.00 0.00 41.69 4.12
90 91 4.410400 CTGGGGGCGAGTTGGTCC 62.410 72.222 0.00 0.00 0.00 4.46
91 92 4.410400 CCTGGGGGCGAGTTGGTC 62.410 72.222 0.00 0.00 0.00 4.02
114 115 3.972276 GGTGAGCCGGCGCAAAAA 61.972 61.111 34.87 9.47 37.52 1.94
132 133 1.436983 GCCTAAAATCGCCGTCTGGG 61.437 60.000 0.00 0.00 39.58 4.45
133 134 1.762222 CGCCTAAAATCGCCGTCTGG 61.762 60.000 0.00 0.00 38.77 3.86
134 135 1.636340 CGCCTAAAATCGCCGTCTG 59.364 57.895 0.00 0.00 0.00 3.51
135 136 2.171725 GCGCCTAAAATCGCCGTCT 61.172 57.895 0.00 0.00 45.01 4.18
136 137 2.323447 GCGCCTAAAATCGCCGTC 59.677 61.111 0.00 0.00 45.01 4.79
141 142 2.186826 CAGGGGGCGCCTAAAATCG 61.187 63.158 28.56 5.85 0.00 3.34
142 143 1.828224 CCAGGGGGCGCCTAAAATC 60.828 63.158 28.56 8.16 0.00 2.17
143 144 2.278738 CCAGGGGGCGCCTAAAAT 59.721 61.111 28.56 5.30 0.00 1.82
144 145 4.055227 CCCAGGGGGCGCCTAAAA 62.055 66.667 28.56 0.00 35.35 1.52
166 167 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
181 182 1.222936 GGGGCTCCACATGTCAGAG 59.777 63.158 15.28 15.28 0.00 3.35
182 183 1.538629 TGGGGCTCCACATGTCAGA 60.539 57.895 0.00 0.00 38.32 3.27
183 184 3.080641 TGGGGCTCCACATGTCAG 58.919 61.111 0.00 0.00 38.32 3.51
192 193 2.174854 ACAATGGTAAGTATGGGGCTCC 59.825 50.000 0.00 0.00 0.00 4.70
193 194 3.118038 TCACAATGGTAAGTATGGGGCTC 60.118 47.826 0.00 0.00 0.00 4.70
194 195 2.849943 TCACAATGGTAAGTATGGGGCT 59.150 45.455 0.00 0.00 0.00 5.19
195 196 3.118038 TCTCACAATGGTAAGTATGGGGC 60.118 47.826 0.00 0.00 0.00 5.80
196 197 4.771114 TCTCACAATGGTAAGTATGGGG 57.229 45.455 0.00 0.00 0.00 4.96
197 198 5.065914 CCATCTCACAATGGTAAGTATGGG 58.934 45.833 0.00 0.00 41.18 4.00
198 199 5.928976 TCCATCTCACAATGGTAAGTATGG 58.071 41.667 3.03 0.00 45.46 2.74
199 200 6.820335 TCTCCATCTCACAATGGTAAGTATG 58.180 40.000 3.03 0.00 45.46 2.39
200 201 6.841229 TCTCTCCATCTCACAATGGTAAGTAT 59.159 38.462 3.03 0.00 45.46 2.12
201 202 6.194967 TCTCTCCATCTCACAATGGTAAGTA 58.805 40.000 3.03 0.00 45.46 2.24
202 203 5.026121 TCTCTCCATCTCACAATGGTAAGT 58.974 41.667 3.03 0.00 45.46 2.24
203 204 5.604758 TCTCTCCATCTCACAATGGTAAG 57.395 43.478 3.03 2.90 45.46 2.34
204 205 5.485353 AGTTCTCTCCATCTCACAATGGTAA 59.515 40.000 3.03 0.00 45.46 2.85
205 206 5.026121 AGTTCTCTCCATCTCACAATGGTA 58.974 41.667 3.03 0.00 45.46 3.25
206 207 3.843027 AGTTCTCTCCATCTCACAATGGT 59.157 43.478 3.03 0.00 45.46 3.55
207 208 4.081254 TCAGTTCTCTCCATCTCACAATGG 60.081 45.833 0.00 0.00 46.44 3.16
208 209 4.869297 GTCAGTTCTCTCCATCTCACAATG 59.131 45.833 0.00 0.00 0.00 2.82
209 210 4.529769 TGTCAGTTCTCTCCATCTCACAAT 59.470 41.667 0.00 0.00 0.00 2.71
210 211 3.897505 TGTCAGTTCTCTCCATCTCACAA 59.102 43.478 0.00 0.00 0.00 3.33
211 212 3.500343 TGTCAGTTCTCTCCATCTCACA 58.500 45.455 0.00 0.00 0.00 3.58
212 213 4.081752 ACATGTCAGTTCTCTCCATCTCAC 60.082 45.833 0.00 0.00 0.00 3.51
213 214 4.081807 CACATGTCAGTTCTCTCCATCTCA 60.082 45.833 0.00 0.00 0.00 3.27
214 215 4.431809 CACATGTCAGTTCTCTCCATCTC 58.568 47.826 0.00 0.00 0.00 2.75
215 216 3.197333 CCACATGTCAGTTCTCTCCATCT 59.803 47.826 0.00 0.00 0.00 2.90
216 217 3.529533 CCACATGTCAGTTCTCTCCATC 58.470 50.000 0.00 0.00 0.00 3.51
217 218 2.238144 CCCACATGTCAGTTCTCTCCAT 59.762 50.000 0.00 0.00 0.00 3.41
218 219 1.625315 CCCACATGTCAGTTCTCTCCA 59.375 52.381 0.00 0.00 0.00 3.86
219 220 1.625818 ACCCACATGTCAGTTCTCTCC 59.374 52.381 0.00 0.00 0.00 3.71
220 221 2.564947 AGACCCACATGTCAGTTCTCTC 59.435 50.000 0.00 0.00 37.73 3.20
221 222 2.614259 AGACCCACATGTCAGTTCTCT 58.386 47.619 0.00 0.00 37.73 3.10
222 223 3.118956 CCTAGACCCACATGTCAGTTCTC 60.119 52.174 0.00 0.00 37.73 2.87
223 224 2.834549 CCTAGACCCACATGTCAGTTCT 59.165 50.000 0.00 0.00 37.73 3.01
224 225 2.093447 CCCTAGACCCACATGTCAGTTC 60.093 54.545 0.00 0.00 37.73 3.01
225 226 1.909302 CCCTAGACCCACATGTCAGTT 59.091 52.381 0.00 0.00 37.73 3.16
226 227 1.573108 CCCTAGACCCACATGTCAGT 58.427 55.000 0.00 0.00 37.73 3.41
227 228 0.833287 CCCCTAGACCCACATGTCAG 59.167 60.000 0.00 0.00 37.73 3.51
228 229 0.118346 ACCCCTAGACCCACATGTCA 59.882 55.000 0.00 0.00 37.73 3.58
229 230 2.170012 TACCCCTAGACCCACATGTC 57.830 55.000 0.00 0.00 35.43 3.06
230 231 2.889522 ATACCCCTAGACCCACATGT 57.110 50.000 0.00 0.00 0.00 3.21
231 232 4.519906 AAAATACCCCTAGACCCACATG 57.480 45.455 0.00 0.00 0.00 3.21
232 233 5.914716 TGATAAAATACCCCTAGACCCACAT 59.085 40.000 0.00 0.00 0.00 3.21
233 234 5.290335 TGATAAAATACCCCTAGACCCACA 58.710 41.667 0.00 0.00 0.00 4.17
234 235 5.899631 TGATAAAATACCCCTAGACCCAC 57.100 43.478 0.00 0.00 0.00 4.61
235 236 9.861919 TTATATGATAAAATACCCCTAGACCCA 57.138 33.333 0.00 0.00 0.00 4.51
242 243 9.975218 GACCATGTTATATGATAAAATACCCCT 57.025 33.333 0.00 0.00 0.00 4.79
243 244 9.747898 TGACCATGTTATATGATAAAATACCCC 57.252 33.333 0.00 0.00 0.00 4.95
249 250 9.607988 ACTCGTTGACCATGTTATATGATAAAA 57.392 29.630 0.00 0.00 0.00 1.52
250 251 9.607988 AACTCGTTGACCATGTTATATGATAAA 57.392 29.630 0.00 0.00 0.00 1.40
251 252 9.607988 AAACTCGTTGACCATGTTATATGATAA 57.392 29.630 0.00 0.00 0.00 1.75
252 253 9.040939 CAAACTCGTTGACCATGTTATATGATA 57.959 33.333 0.00 0.00 39.87 2.15
253 254 7.768582 TCAAACTCGTTGACCATGTTATATGAT 59.231 33.333 0.00 0.00 41.47 2.45
254 255 7.100409 TCAAACTCGTTGACCATGTTATATGA 58.900 34.615 0.00 0.00 41.47 2.15
255 256 7.302350 TCAAACTCGTTGACCATGTTATATG 57.698 36.000 0.00 0.00 41.47 1.78
256 257 6.037172 GCTCAAACTCGTTGACCATGTTATAT 59.963 38.462 0.00 0.00 41.47 0.86
257 258 5.350365 GCTCAAACTCGTTGACCATGTTATA 59.650 40.000 0.00 0.00 41.47 0.98
258 259 4.154195 GCTCAAACTCGTTGACCATGTTAT 59.846 41.667 0.00 0.00 41.47 1.89
259 260 3.496884 GCTCAAACTCGTTGACCATGTTA 59.503 43.478 0.00 0.00 41.47 2.41
260 261 2.290641 GCTCAAACTCGTTGACCATGTT 59.709 45.455 0.00 0.00 41.47 2.71
261 262 1.873591 GCTCAAACTCGTTGACCATGT 59.126 47.619 0.00 0.00 41.47 3.21
262 263 2.096069 CAGCTCAAACTCGTTGACCATG 60.096 50.000 0.00 0.00 41.47 3.66
263 264 2.146342 CAGCTCAAACTCGTTGACCAT 58.854 47.619 0.00 0.00 41.47 3.55
264 265 1.138069 TCAGCTCAAACTCGTTGACCA 59.862 47.619 0.00 0.00 41.47 4.02
265 266 1.527311 GTCAGCTCAAACTCGTTGACC 59.473 52.381 0.00 0.00 41.47 4.02
266 267 2.201732 TGTCAGCTCAAACTCGTTGAC 58.798 47.619 0.00 0.00 41.47 3.18
267 268 2.595124 TGTCAGCTCAAACTCGTTGA 57.405 45.000 0.00 0.00 44.20 3.18
268 269 3.885484 ATTGTCAGCTCAAACTCGTTG 57.115 42.857 0.00 0.00 38.71 4.10
269 270 4.084537 CGTTATTGTCAGCTCAAACTCGTT 60.085 41.667 0.00 0.00 0.00 3.85
270 271 3.428870 CGTTATTGTCAGCTCAAACTCGT 59.571 43.478 0.00 0.00 0.00 4.18
271 272 3.722082 GCGTTATTGTCAGCTCAAACTCG 60.722 47.826 0.00 0.00 0.00 4.18
272 273 3.433615 AGCGTTATTGTCAGCTCAAACTC 59.566 43.478 0.00 0.00 34.48 3.01
273 274 3.187227 CAGCGTTATTGTCAGCTCAAACT 59.813 43.478 0.00 0.00 37.94 2.66
274 275 3.058914 ACAGCGTTATTGTCAGCTCAAAC 60.059 43.478 0.00 0.00 37.94 2.93
275 276 3.138304 ACAGCGTTATTGTCAGCTCAAA 58.862 40.909 0.00 0.00 37.94 2.69
276 277 2.766313 ACAGCGTTATTGTCAGCTCAA 58.234 42.857 0.00 0.00 37.94 3.02
277 278 2.455674 ACAGCGTTATTGTCAGCTCA 57.544 45.000 0.00 0.00 37.94 4.26
278 279 3.813529 AAACAGCGTTATTGTCAGCTC 57.186 42.857 0.00 0.00 37.94 4.09
279 280 5.411361 TCATTAAACAGCGTTATTGTCAGCT 59.589 36.000 0.00 0.00 41.07 4.24
280 281 5.508224 GTCATTAAACAGCGTTATTGTCAGC 59.492 40.000 0.00 0.00 0.00 4.26
281 282 6.598525 TGTCATTAAACAGCGTTATTGTCAG 58.401 36.000 0.00 0.00 0.00 3.51
282 283 6.546972 TGTCATTAAACAGCGTTATTGTCA 57.453 33.333 0.00 0.00 0.00 3.58
283 284 8.447787 AAATGTCATTAAACAGCGTTATTGTC 57.552 30.769 0.00 0.00 31.50 3.18
284 285 8.810652 AAAATGTCATTAAACAGCGTTATTGT 57.189 26.923 0.00 0.00 31.50 2.71
285 286 9.514822 CAAAAATGTCATTAAACAGCGTTATTG 57.485 29.630 0.00 0.00 31.50 1.90
286 287 9.469807 TCAAAAATGTCATTAAACAGCGTTATT 57.530 25.926 0.00 0.00 31.50 1.40
287 288 9.128107 CTCAAAAATGTCATTAAACAGCGTTAT 57.872 29.630 0.00 0.00 31.50 1.89
288 289 7.114247 GCTCAAAAATGTCATTAAACAGCGTTA 59.886 33.333 0.00 0.00 31.50 3.18
289 290 6.074356 GCTCAAAAATGTCATTAAACAGCGTT 60.074 34.615 0.00 0.00 31.50 4.84
290 291 5.402270 GCTCAAAAATGTCATTAAACAGCGT 59.598 36.000 0.00 0.00 31.50 5.07
291 292 5.401972 TGCTCAAAAATGTCATTAAACAGCG 59.598 36.000 0.00 0.00 31.50 5.18
292 293 6.768029 TGCTCAAAAATGTCATTAAACAGC 57.232 33.333 0.00 5.68 31.50 4.40
293 294 8.602328 TGTTTGCTCAAAAATGTCATTAAACAG 58.398 29.630 13.02 4.29 32.54 3.16
294 295 8.484641 TGTTTGCTCAAAAATGTCATTAAACA 57.515 26.923 13.02 13.02 33.51 2.83
295 296 9.584839 GATGTTTGCTCAAAAATGTCATTAAAC 57.415 29.630 2.95 4.97 28.83 2.01
296 297 9.545105 AGATGTTTGCTCAAAAATGTCATTAAA 57.455 25.926 2.95 0.00 28.83 1.52
299 300 9.715121 ATTAGATGTTTGCTCAAAAATGTCATT 57.285 25.926 2.95 0.00 28.83 2.57
300 301 9.146984 CATTAGATGTTTGCTCAAAAATGTCAT 57.853 29.630 2.95 0.08 28.83 3.06
301 302 7.599621 CCATTAGATGTTTGCTCAAAAATGTCA 59.400 33.333 2.95 0.00 28.83 3.58
302 303 7.814107 TCCATTAGATGTTTGCTCAAAAATGTC 59.186 33.333 2.95 0.00 28.83 3.06
303 304 7.669427 TCCATTAGATGTTTGCTCAAAAATGT 58.331 30.769 2.95 2.21 28.83 2.71
304 305 8.437742 GTTCCATTAGATGTTTGCTCAAAAATG 58.562 33.333 2.95 6.33 28.83 2.32
305 306 8.149647 TGTTCCATTAGATGTTTGCTCAAAAAT 58.850 29.630 0.00 0.00 31.23 1.82
306 307 7.495901 TGTTCCATTAGATGTTTGCTCAAAAA 58.504 30.769 0.00 0.00 31.33 1.94
307 308 7.048629 TGTTCCATTAGATGTTTGCTCAAAA 57.951 32.000 0.00 0.00 31.33 2.44
308 309 6.647334 TGTTCCATTAGATGTTTGCTCAAA 57.353 33.333 0.00 0.00 0.00 2.69
309 310 6.647334 TTGTTCCATTAGATGTTTGCTCAA 57.353 33.333 0.00 0.00 0.00 3.02
310 311 6.433716 TCATTGTTCCATTAGATGTTTGCTCA 59.566 34.615 0.00 0.00 0.00 4.26
311 312 6.749118 GTCATTGTTCCATTAGATGTTTGCTC 59.251 38.462 0.00 0.00 0.00 4.26
312 313 6.209192 TGTCATTGTTCCATTAGATGTTTGCT 59.791 34.615 0.00 0.00 0.00 3.91
313 314 6.389091 TGTCATTGTTCCATTAGATGTTTGC 58.611 36.000 0.00 0.00 0.00 3.68
314 315 8.991243 AATGTCATTGTTCCATTAGATGTTTG 57.009 30.769 0.00 0.00 0.00 2.93
345 346 9.565213 GCATGCTCAAAAATACCATTAGATATC 57.435 33.333 11.37 0.00 0.00 1.63
346 347 9.081204 TGCATGCTCAAAAATACCATTAGATAT 57.919 29.630 20.33 0.00 0.00 1.63
347 348 8.462589 TGCATGCTCAAAAATACCATTAGATA 57.537 30.769 20.33 0.00 0.00 1.98
348 349 7.350744 TGCATGCTCAAAAATACCATTAGAT 57.649 32.000 20.33 0.00 0.00 1.98
349 350 6.772360 TGCATGCTCAAAAATACCATTAGA 57.228 33.333 20.33 0.00 0.00 2.10
350 351 7.431249 AGATGCATGCTCAAAAATACCATTAG 58.569 34.615 20.33 0.00 0.00 1.73
351 352 7.068470 TGAGATGCATGCTCAAAAATACCATTA 59.932 33.333 20.33 0.00 39.29 1.90
352 353 6.127281 TGAGATGCATGCTCAAAAATACCATT 60.127 34.615 20.33 0.00 39.29 3.16
353 354 5.361571 TGAGATGCATGCTCAAAAATACCAT 59.638 36.000 20.33 0.00 39.29 3.55
354 355 4.705991 TGAGATGCATGCTCAAAAATACCA 59.294 37.500 20.33 1.73 39.29 3.25
355 356 5.039333 GTGAGATGCATGCTCAAAAATACC 58.961 41.667 22.30 10.51 43.39 2.73
356 357 5.643664 TGTGAGATGCATGCTCAAAAATAC 58.356 37.500 22.30 13.59 43.39 1.89
357 358 5.648960 TCTGTGAGATGCATGCTCAAAAATA 59.351 36.000 22.30 9.38 43.39 1.40
358 359 4.461431 TCTGTGAGATGCATGCTCAAAAAT 59.539 37.500 22.30 1.92 43.39 1.82
359 360 3.822167 TCTGTGAGATGCATGCTCAAAAA 59.178 39.130 22.30 13.99 43.39 1.94
360 361 3.414269 TCTGTGAGATGCATGCTCAAAA 58.586 40.909 22.30 15.66 43.39 2.44
361 362 3.062122 TCTGTGAGATGCATGCTCAAA 57.938 42.857 22.30 18.35 43.39 2.69
362 363 2.745821 GTTCTGTGAGATGCATGCTCAA 59.254 45.455 22.30 14.84 43.39 3.02
363 364 2.289819 TGTTCTGTGAGATGCATGCTCA 60.290 45.455 20.33 18.87 39.90 4.26
364 365 2.353323 TGTTCTGTGAGATGCATGCTC 58.647 47.619 20.33 13.56 0.00 4.26
365 366 2.484742 TGTTCTGTGAGATGCATGCT 57.515 45.000 20.33 4.11 0.00 3.79
366 367 3.128068 TCATTGTTCTGTGAGATGCATGC 59.872 43.478 11.82 11.82 0.00 4.06
367 368 4.155280 TGTCATTGTTCTGTGAGATGCATG 59.845 41.667 2.46 0.00 0.00 4.06
368 369 4.329392 TGTCATTGTTCTGTGAGATGCAT 58.671 39.130 0.00 0.00 0.00 3.96
369 370 3.742385 TGTCATTGTTCTGTGAGATGCA 58.258 40.909 0.00 0.00 0.00 3.96
370 371 4.959596 ATGTCATTGTTCTGTGAGATGC 57.040 40.909 0.00 0.00 28.48 3.91
371 372 7.364970 TCAAAATGTCATTGTTCTGTGAGATG 58.635 34.615 0.00 0.00 29.90 2.90
372 373 7.514784 TCAAAATGTCATTGTTCTGTGAGAT 57.485 32.000 0.00 0.00 30.55 2.75
373 374 6.513884 GCTCAAAATGTCATTGTTCTGTGAGA 60.514 38.462 16.13 0.00 32.39 3.27
374 375 5.628193 GCTCAAAATGTCATTGTTCTGTGAG 59.372 40.000 0.00 6.95 33.53 3.51
375 376 5.067544 TGCTCAAAATGTCATTGTTCTGTGA 59.932 36.000 0.00 0.00 0.00 3.58
376 377 5.283294 TGCTCAAAATGTCATTGTTCTGTG 58.717 37.500 0.00 0.00 0.00 3.66
377 378 5.068198 ACTGCTCAAAATGTCATTGTTCTGT 59.932 36.000 0.00 0.00 0.00 3.41
378 379 5.526115 ACTGCTCAAAATGTCATTGTTCTG 58.474 37.500 0.00 0.00 0.00 3.02
379 380 5.779529 ACTGCTCAAAATGTCATTGTTCT 57.220 34.783 0.00 0.00 0.00 3.01
380 381 5.750067 ACAACTGCTCAAAATGTCATTGTTC 59.250 36.000 0.00 0.00 0.00 3.18
381 382 5.663456 ACAACTGCTCAAAATGTCATTGTT 58.337 33.333 0.00 0.00 0.00 2.83
382 383 5.266733 ACAACTGCTCAAAATGTCATTGT 57.733 34.783 0.00 0.00 0.00 2.71
383 384 7.878477 AATACAACTGCTCAAAATGTCATTG 57.122 32.000 0.00 0.00 0.00 2.82
384 385 8.891671 AAAATACAACTGCTCAAAATGTCATT 57.108 26.923 0.00 0.00 0.00 2.57
385 386 8.362639 AGAAAATACAACTGCTCAAAATGTCAT 58.637 29.630 0.00 0.00 0.00 3.06
386 387 7.715657 AGAAAATACAACTGCTCAAAATGTCA 58.284 30.769 0.00 0.00 0.00 3.58
387 388 9.677567 TTAGAAAATACAACTGCTCAAAATGTC 57.322 29.630 0.00 0.00 0.00 3.06
420 421 9.823647 CCATTAGTAGTGTCTCATTATTCAGTT 57.176 33.333 0.00 0.00 0.00 3.16
421 422 8.982723 ACCATTAGTAGTGTCTCATTATTCAGT 58.017 33.333 0.00 0.00 0.00 3.41
452 453 7.464577 GCAGCTTCTTTCTTTCAAACGATTTTT 60.465 33.333 0.00 0.00 0.00 1.94
453 454 6.019559 GCAGCTTCTTTCTTTCAAACGATTTT 60.020 34.615 0.00 0.00 0.00 1.82
454 455 5.460091 GCAGCTTCTTTCTTTCAAACGATTT 59.540 36.000 0.00 0.00 0.00 2.17
455 456 4.978580 GCAGCTTCTTTCTTTCAAACGATT 59.021 37.500 0.00 0.00 0.00 3.34
456 457 4.540824 GCAGCTTCTTTCTTTCAAACGAT 58.459 39.130 0.00 0.00 0.00 3.73
529 533 1.559368 CAGGGATGGACATTTGGCAA 58.441 50.000 0.00 0.00 0.00 4.52
578 582 2.798680 CCGCAACTGCTACAGTAGTAG 58.201 52.381 20.82 20.82 44.62 2.57
580 584 0.389948 GCCGCAACTGCTACAGTAGT 60.390 55.000 9.42 0.00 44.62 2.73
581 585 0.108615 AGCCGCAACTGCTACAGTAG 60.109 55.000 2.85 2.85 44.62 2.57
636 665 1.311859 CTGACTGCTTGCTTGGTTGA 58.688 50.000 0.00 0.00 0.00 3.18
638 667 1.312815 GACTGACTGCTTGCTTGGTT 58.687 50.000 0.00 0.00 0.00 3.67
640 669 1.531423 ATGACTGACTGCTTGCTTGG 58.469 50.000 0.00 0.00 0.00 3.61
641 670 2.921069 GCAATGACTGACTGCTTGCTTG 60.921 50.000 0.00 0.00 39.21 4.01
642 671 1.268899 GCAATGACTGACTGCTTGCTT 59.731 47.619 0.00 0.00 39.21 3.91
645 674 1.605232 TGTGCAATGACTGACTGCTTG 59.395 47.619 0.00 0.00 37.00 4.01
646 675 1.971481 TGTGCAATGACTGACTGCTT 58.029 45.000 0.00 0.00 37.00 3.91
647 676 1.971481 TTGTGCAATGACTGACTGCT 58.029 45.000 0.00 0.00 37.00 4.24
648 677 2.726989 CGATTGTGCAATGACTGACTGC 60.727 50.000 1.77 0.00 36.60 4.40
649 678 2.726989 GCGATTGTGCAATGACTGACTG 60.727 50.000 1.77 0.00 34.15 3.51
650 679 1.466167 GCGATTGTGCAATGACTGACT 59.534 47.619 1.77 0.00 34.15 3.41
651 680 1.466360 GGCGATTGTGCAATGACTGAC 60.466 52.381 1.77 0.00 36.28 3.51
652 681 0.804364 GGCGATTGTGCAATGACTGA 59.196 50.000 1.77 0.00 36.28 3.41
812 842 0.107165 GATGGTCGGAGGGGGAAAAG 60.107 60.000 0.00 0.00 0.00 2.27
819 850 3.447025 GAAGGCGATGGTCGGAGGG 62.447 68.421 1.29 0.00 40.84 4.30
887 920 3.487202 CGTGGCGTGGGTTCGATG 61.487 66.667 0.00 0.00 0.00 3.84
1453 1512 1.068588 TCAGGCAATAAGTCCGATCGG 59.931 52.381 28.62 28.62 0.00 4.18
1460 1519 3.685058 GCAACGAATCAGGCAATAAGTC 58.315 45.455 0.00 0.00 0.00 3.01
1499 1558 0.673644 GATCAACCACCAGTCCACGG 60.674 60.000 0.00 0.00 0.00 4.94
1500 1559 1.014044 CGATCAACCACCAGTCCACG 61.014 60.000 0.00 0.00 0.00 4.94
1782 1842 0.103026 TCTCGCGGATGTCCTTGATG 59.897 55.000 6.13 0.00 0.00 3.07
1842 1902 4.794439 TCATCGCCGTCGCTGTGG 62.794 66.667 0.00 0.00 33.91 4.17
1870 1930 2.456119 CGTCTGACAGATTGGCGCC 61.456 63.158 22.73 22.73 0.00 6.53
1906 1966 3.122948 GCACAGTGTACGTGTTAATCTGG 59.877 47.826 0.00 0.00 36.71 3.86
1911 1971 1.489574 CGGCACAGTGTACGTGTTAA 58.510 50.000 0.00 0.00 36.71 2.01
1924 1984 2.206750 GTTATTAAGATCGGCGGCACA 58.793 47.619 10.53 0.00 0.00 4.57
1962 2022 7.067372 TGCACCTTTAGTAATGGATCATCAAAG 59.933 37.037 19.04 0.00 0.00 2.77
2007 2067 1.132436 CACCTGCAATGCGTACGTG 59.868 57.895 17.90 8.58 0.00 4.49
2061 2121 3.853487 ATCCTCTCGCGCATGCCA 61.853 61.111 13.15 0.00 38.08 4.92
2073 2133 2.728817 CCGTACTCCGCCATCCTC 59.271 66.667 0.00 0.00 34.38 3.71
2384 2444 6.992063 AGCAATGGGATAATAAGATAAGCG 57.008 37.500 0.00 0.00 0.00 4.68
2435 2495 4.521146 AGTAGTAACTACGCTGGCTAAGA 58.479 43.478 0.00 0.00 41.37 2.10
2436 2496 4.897025 AGTAGTAACTACGCTGGCTAAG 57.103 45.455 0.00 0.00 41.37 2.18
2437 2497 5.404946 CAAAGTAGTAACTACGCTGGCTAA 58.595 41.667 0.00 0.00 41.37 3.09
2439 2499 3.846360 CAAAGTAGTAACTACGCTGGCT 58.154 45.455 0.00 0.00 41.37 4.75
2440 2500 2.347755 GCAAAGTAGTAACTACGCTGGC 59.652 50.000 0.00 0.00 41.37 4.85
2441 2501 2.597305 CGCAAAGTAGTAACTACGCTGG 59.403 50.000 0.00 0.00 41.37 4.85
2453 2518 5.220303 GCTCAAGAGTAATCACGCAAAGTAG 60.220 44.000 0.00 0.00 0.00 2.57
2457 2522 3.186409 GTGCTCAAGAGTAATCACGCAAA 59.814 43.478 0.00 0.00 0.00 3.68
2469 2551 1.363744 GACATTCGGGTGCTCAAGAG 58.636 55.000 0.00 0.00 0.00 2.85
2475 2557 0.949105 GTCAACGACATTCGGGTGCT 60.949 55.000 0.03 0.00 45.59 4.40
2508 2590 2.730672 CGCTGACCAGTAGTTGCGC 61.731 63.158 0.00 0.00 41.97 6.09
2509 2591 1.080772 TCGCTGACCAGTAGTTGCG 60.081 57.895 0.00 0.00 46.25 4.85
2566 2648 3.721087 AAACTCCGGGATGAGACAAAT 57.279 42.857 0.00 0.00 36.22 2.32
2579 2661 1.669795 GCAGGCCATTTCAAAACTCCG 60.670 52.381 5.01 0.00 0.00 4.63
2650 2733 0.706433 ATGCCATCCCCACAAAGACT 59.294 50.000 0.00 0.00 0.00 3.24
2654 2737 1.076187 TGTACATGCCATCCCCACAAA 59.924 47.619 0.00 0.00 0.00 2.83
2715 2812 4.157120 GGTGGACCCGGTGGATCG 62.157 72.222 0.00 0.00 34.81 3.69
2742 2839 4.042271 CATGGATTGGATGGATGGATGA 57.958 45.455 0.00 0.00 0.00 2.92
2757 2854 0.322975 GTAGCTGCCGATCCATGGAT 59.677 55.000 27.66 27.66 37.59 3.41
2758 2855 1.748403 GTAGCTGCCGATCCATGGA 59.252 57.895 18.88 18.88 0.00 3.41
2759 2856 1.302033 GGTAGCTGCCGATCCATGG 60.302 63.158 4.63 4.97 0.00 3.66
2760 2857 1.302033 GGGTAGCTGCCGATCCATG 60.302 63.158 15.22 0.00 0.00 3.66
2761 2858 1.344953 TTGGGTAGCTGCCGATCCAT 61.345 55.000 15.22 0.00 0.00 3.41
2767 2872 3.118454 CGTGTTGGGTAGCTGCCG 61.118 66.667 15.22 0.00 0.00 5.69
2783 2888 6.483307 TGATGGGTTTTGCTATTAATCTCTCG 59.517 38.462 0.00 0.00 0.00 4.04
2784 2889 7.807977 TGATGGGTTTTGCTATTAATCTCTC 57.192 36.000 0.00 0.00 0.00 3.20
2786 2891 8.169977 TGATGATGGGTTTTGCTATTAATCTC 57.830 34.615 0.00 0.00 0.00 2.75
2787 2892 8.716674 ATGATGATGGGTTTTGCTATTAATCT 57.283 30.769 0.00 0.00 0.00 2.40
2788 2893 8.031277 GGATGATGATGGGTTTTGCTATTAATC 58.969 37.037 0.00 0.00 0.00 1.75
2789 2894 7.510001 TGGATGATGATGGGTTTTGCTATTAAT 59.490 33.333 0.00 0.00 0.00 1.40
2790 2895 6.838090 TGGATGATGATGGGTTTTGCTATTAA 59.162 34.615 0.00 0.00 0.00 1.40
2791 2896 6.372104 TGGATGATGATGGGTTTTGCTATTA 58.628 36.000 0.00 0.00 0.00 0.98
2794 2921 4.248174 TGGATGATGATGGGTTTTGCTA 57.752 40.909 0.00 0.00 0.00 3.49
2804 2931 6.036844 GTCGTATCAATCCATGGATGATGATG 59.963 42.308 33.56 25.45 34.71 3.07
2837 2966 5.482526 TCCTACAGTGGTTAACAGAAGCATA 59.517 40.000 8.10 0.00 0.00 3.14
2858 2987 1.283029 CCATCCACCACATCAACTCCT 59.717 52.381 0.00 0.00 0.00 3.69
2872 3001 2.472463 GGCCCCATCATCCCATCCA 61.472 63.158 0.00 0.00 0.00 3.41
2906 3035 3.117491 ACGGCTACGAGCTATAGTGTA 57.883 47.619 0.84 2.14 44.60 2.90
2910 3039 1.397692 GCCTACGGCTACGAGCTATAG 59.602 57.143 0.00 0.00 46.69 1.31
2913 3042 3.741860 GCCTACGGCTACGAGCTA 58.258 61.111 0.00 0.00 46.69 3.32
2952 3113 6.602009 TCAAATCATATCATGGGAGATCATGC 59.398 38.462 0.00 0.00 42.96 4.06
2953 3114 8.459635 GTTCAAATCATATCATGGGAGATCATG 58.540 37.037 0.00 0.00 44.20 3.07
3049 3216 2.593925 AGCAAGGGAAAAGGGAGAAG 57.406 50.000 0.00 0.00 0.00 2.85
3060 3227 3.157087 GACAATCTCCAAAAGCAAGGGA 58.843 45.455 0.00 0.00 0.00 4.20
3083 3250 1.357137 TTTCCAAATTCCAAGGCCCC 58.643 50.000 0.00 0.00 0.00 5.80
3087 3254 6.759827 CAGCAGAATATTTCCAAATTCCAAGG 59.240 38.462 0.00 0.00 33.44 3.61
3145 3312 1.336440 CAGAGGAGTATCTCACTGGCG 59.664 57.143 11.89 0.00 37.72 5.69
3185 3352 6.827586 TTCTTTTTGTAGAACACAACCTGT 57.172 33.333 0.00 0.00 46.80 4.00
3225 3393 7.763172 TTTTTGATAAAAACACGCAGTTCAT 57.237 28.000 0.00 0.00 40.26 2.57
3277 3448 9.319143 CAAAGTGCTTACTACTGCTAGATTATT 57.681 33.333 0.00 0.00 0.00 1.40
3280 3451 6.109359 CCAAAGTGCTTACTACTGCTAGATT 58.891 40.000 0.00 0.00 0.00 2.40
3281 3452 5.187967 ACCAAAGTGCTTACTACTGCTAGAT 59.812 40.000 0.00 0.00 0.00 1.98
3282 3453 4.527038 ACCAAAGTGCTTACTACTGCTAGA 59.473 41.667 0.00 0.00 0.00 2.43
3319 3644 0.814457 TAACAATCGGCCATGGCAAC 59.186 50.000 36.56 20.17 44.11 4.17
3330 3655 4.397730 TGGGTGAACCATTCATAACAATCG 59.602 41.667 1.16 0.00 46.80 3.34
3382 3707 8.037758 TCCTTTAAAGTTTCAAATTTGCACTCA 58.962 29.630 18.07 10.07 0.00 3.41
3383 3708 8.419076 TCCTTTAAAGTTTCAAATTTGCACTC 57.581 30.769 18.07 8.19 0.00 3.51
3422 3747 4.439968 CATGTGCTATCTCTCTCTTGCAA 58.560 43.478 0.00 0.00 32.10 4.08
3423 3748 3.181468 CCATGTGCTATCTCTCTCTTGCA 60.181 47.826 0.00 0.00 0.00 4.08
3453 3778 4.079500 TGGCCCAGATACATCATAAACCAA 60.080 41.667 0.00 0.00 0.00 3.67
3526 3851 4.568072 TGCATAAGACAGGAAAGGCTAA 57.432 40.909 0.00 0.00 0.00 3.09
3582 3907 4.005650 ACACACAATGAGCACCTCAATAG 58.994 43.478 0.00 0.00 44.04 1.73
3633 3958 0.675837 CAGATGGTCCAGTGGCACAG 60.676 60.000 21.41 12.22 41.80 3.66
3782 4147 6.567602 AAGCCTATAATGGTGGATATCTCC 57.432 41.667 2.05 6.61 42.45 3.71
3926 4294 1.283487 CACGCACTCAAAGCATGCA 59.717 52.632 21.98 0.00 39.39 3.96
3940 4308 0.028902 AGTTTTCTTTCGGTGCACGC 59.971 50.000 11.45 2.85 43.86 5.34
3948 4316 8.889849 TTTAACTCAACTCAAGTTTTCTTTCG 57.110 30.769 0.00 0.00 38.17 3.46
3997 4366 0.681887 TCAGCCACAATCTGCATGGG 60.682 55.000 5.47 0.00 33.81 4.00
4101 4470 1.558294 TGCATCTCAGTCCATTGCTCT 59.442 47.619 0.00 0.00 34.47 4.09
4260 4629 6.635755 AGAAGCATTTCTAGGTACTGAAGAC 58.364 40.000 0.00 0.00 41.82 3.01
4353 4770 5.125100 CAAAAGTGGATGCATGTAAGTGT 57.875 39.130 2.46 0.00 0.00 3.55
4386 4803 5.647658 TGTTTCAGCCAATCGATACATCTTT 59.352 36.000 0.00 0.00 0.00 2.52
4395 4812 3.882888 ACTCTTTTGTTTCAGCCAATCGA 59.117 39.130 0.00 0.00 0.00 3.59
4396 4813 4.228912 ACTCTTTTGTTTCAGCCAATCG 57.771 40.909 0.00 0.00 0.00 3.34
4397 4814 6.017109 TGAGTACTCTTTTGTTTCAGCCAATC 60.017 38.462 23.01 0.00 0.00 2.67
4443 5871 4.270008 AGGTTGTAATCTTTAGGCGCAAT 58.730 39.130 10.83 0.00 0.00 3.56
4480 5908 7.787725 TTTGTTTTCAGAGAGAAGTAACTCC 57.212 36.000 0.00 0.00 37.57 3.85
4506 5937 5.008911 TGAAAACCATCTGACACATTCACTG 59.991 40.000 0.00 0.00 0.00 3.66
4576 6008 8.029642 CGAAAGGTAAATATTTCAGTGACTGT 57.970 34.615 12.93 0.00 35.58 3.55
4603 6035 8.246180 ACTAGTGAAATTGCTGAAATATTGTGG 58.754 33.333 0.00 0.00 0.00 4.17
4676 6109 6.071672 TCAGTCAAAAGACCAAAATGTTCACA 60.072 34.615 0.00 0.00 0.00 3.58
4699 6132 4.047822 CAGTTATTTTGGCTTGCGTTTCA 58.952 39.130 0.00 0.00 0.00 2.69
4755 6188 6.208599 ACAGGTTTTCACTTTCAGTTTCAGAA 59.791 34.615 0.00 0.00 0.00 3.02
4757 6190 5.954335 ACAGGTTTTCACTTTCAGTTTCAG 58.046 37.500 0.00 0.00 0.00 3.02
4814 6247 4.568359 GTGTCTGAACATGCACTGTATAGG 59.432 45.833 0.00 0.00 36.98 2.57
4815 6248 5.062683 GTGTGTCTGAACATGCACTGTATAG 59.937 44.000 0.00 0.00 36.98 1.31
4868 6302 1.352017 TGTCCAGAGCCATGAACATGT 59.648 47.619 12.74 0.00 37.11 3.21
4877 6311 1.980765 ACTGAGATTTGTCCAGAGCCA 59.019 47.619 0.00 0.00 0.00 4.75
4916 6354 9.283768 TGCTCAACTCATTCTGAAACTTTTATA 57.716 29.630 0.00 0.00 0.00 0.98
4940 6378 1.165270 AGCAATACGAAAGGGTGTGC 58.835 50.000 0.00 0.00 34.39 4.57
4962 6401 5.248248 TCTGAAAATGTGTAGGTCTGGATCA 59.752 40.000 0.00 0.00 0.00 2.92
4998 6437 4.644685 ACAAGTTAACAACATCACTGGCTT 59.355 37.500 8.61 0.00 0.00 4.35
5108 6548 1.178276 GCTCCGAGACCTTCTTCTGA 58.822 55.000 0.00 0.00 0.00 3.27
5129 6569 2.355481 GTGTGCAGCTTGCCTTGC 60.355 61.111 5.82 0.71 44.23 4.01
5153 6593 2.100525 TTGGGGTGGGGAAATGGGAC 62.101 60.000 0.00 0.00 0.00 4.46
5184 6624 0.252479 CAAGCCTCAGACCATGCTCT 59.748 55.000 0.00 0.00 32.62 4.09
5186 6626 1.378250 GCAAGCCTCAGACCATGCT 60.378 57.895 0.00 0.00 35.08 3.79
5392 6841 0.459237 GAGGATGGTCAGTGCTCACG 60.459 60.000 0.00 0.00 34.58 4.35
5399 6848 0.041238 TCCGGAAGAGGATGGTCAGT 59.959 55.000 0.00 0.00 34.92 3.41
5434 6897 0.833949 GTTCATCTCTCCCCACTCCC 59.166 60.000 0.00 0.00 0.00 4.30
5627 7090 2.165641 CGCCTTACATACACCTCTGACA 59.834 50.000 0.00 0.00 0.00 3.58
5677 7142 4.751600 GGAAGAAGCAGGAAACAAAATTGG 59.248 41.667 0.00 0.00 0.00 3.16
5800 7265 0.108945 GCCAACAAAGCCTCTGATGC 60.109 55.000 0.00 0.00 0.00 3.91
5803 7268 2.260869 GCGCCAACAAAGCCTCTGA 61.261 57.895 0.00 0.00 0.00 3.27
5808 7273 2.931512 TATTTAGCGCCAACAAAGCC 57.068 45.000 2.29 0.00 0.00 4.35
5845 7310 7.558807 TCCATGATCAATCACTAGCTCAAATTT 59.441 33.333 0.00 0.00 40.03 1.82
5900 7365 2.158652 TCTACGTCTACATCCCCCAGAG 60.159 54.545 0.00 0.00 0.00 3.35
5907 7372 0.041488 CGCCGTCTACGTCTACATCC 60.041 60.000 0.00 0.00 37.74 3.51
6064 7529 2.387772 CGGAGGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 0.00 3.71
6065 7530 2.197324 CGGAGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
6066 7531 1.152839 GACGGAGGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
6178 7646 1.406065 CCGCTCCACATCTCTCCCAT 61.406 60.000 0.00 0.00 0.00 4.00
6229 7697 2.086251 CTCCTCAGGATCGCAGCCTC 62.086 65.000 0.00 0.00 32.12 4.70
6230 7698 2.042537 TCCTCAGGATCGCAGCCT 60.043 61.111 0.00 0.00 35.75 4.58
6232 7700 2.130426 TCCTCCTCAGGATCGCAGC 61.130 63.158 0.00 0.00 44.75 5.25
6233 7701 4.266962 TCCTCCTCAGGATCGCAG 57.733 61.111 0.00 0.00 44.75 5.18
6240 7708 1.144913 CTACTCCTCCTCCTCCTCAGG 59.855 61.905 0.00 0.00 42.01 3.86
6241 7709 2.106511 CTCTACTCCTCCTCCTCCTCAG 59.893 59.091 0.00 0.00 0.00 3.35
6242 7710 2.131854 CTCTACTCCTCCTCCTCCTCA 58.868 57.143 0.00 0.00 0.00 3.86
6243 7711 1.423921 CCTCTACTCCTCCTCCTCCTC 59.576 61.905 0.00 0.00 0.00 3.71
6244 7712 1.275357 ACCTCTACTCCTCCTCCTCCT 60.275 57.143 0.00 0.00 0.00 3.69
6245 7713 1.133606 CACCTCTACTCCTCCTCCTCC 60.134 61.905 0.00 0.00 0.00 4.30
6255 7723 4.890581 ACACCATAGATCACACCTCTACTC 59.109 45.833 0.00 0.00 0.00 2.59
6257 7725 6.902771 ATACACCATAGATCACACCTCTAC 57.097 41.667 0.00 0.00 0.00 2.59
6259 7727 5.070981 CCAATACACCATAGATCACACCTCT 59.929 44.000 0.00 0.00 0.00 3.69
6271 7739 5.663556 TCCACATAGACACCAATACACCATA 59.336 40.000 0.00 0.00 0.00 2.74
6272 7740 4.473196 TCCACATAGACACCAATACACCAT 59.527 41.667 0.00 0.00 0.00 3.55
6273 7741 3.841255 TCCACATAGACACCAATACACCA 59.159 43.478 0.00 0.00 0.00 4.17
6275 7743 5.086104 ACTCCACATAGACACCAATACAC 57.914 43.478 0.00 0.00 0.00 2.90
6276 7744 5.755409 AACTCCACATAGACACCAATACA 57.245 39.130 0.00 0.00 0.00 2.29
6277 7745 6.093633 GGAAAACTCCACATAGACACCAATAC 59.906 42.308 0.00 0.00 0.00 1.89
6278 7746 6.177610 GGAAAACTCCACATAGACACCAATA 58.822 40.000 0.00 0.00 0.00 1.90
6279 7747 5.010282 GGAAAACTCCACATAGACACCAAT 58.990 41.667 0.00 0.00 0.00 3.16
6281 7749 3.392947 TGGAAAACTCCACATAGACACCA 59.607 43.478 0.00 0.00 34.33 4.17
6282 7750 4.015872 TGGAAAACTCCACATAGACACC 57.984 45.455 0.00 0.00 34.33 4.16
6283 7751 4.819630 TGTTGGAAAACTCCACATAGACAC 59.180 41.667 0.00 0.00 39.90 3.67
6284 7752 4.819630 GTGTTGGAAAACTCCACATAGACA 59.180 41.667 0.00 0.00 39.90 3.41
6285 7753 4.084013 CGTGTTGGAAAACTCCACATAGAC 60.084 45.833 0.00 0.00 39.90 2.59
6286 7754 4.062293 CGTGTTGGAAAACTCCACATAGA 58.938 43.478 0.00 0.00 39.90 1.98
6287 7755 4.062293 TCGTGTTGGAAAACTCCACATAG 58.938 43.478 0.00 0.00 39.90 2.23
6299 7767 4.142227 GCTACTTATCCTCTCGTGTTGGAA 60.142 45.833 6.20 0.00 33.20 3.53
6365 7833 0.515127 TTGCCGCTAAATGACACACG 59.485 50.000 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.