Multiple sequence alignment - TraesCS4A01G065500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G065500 chr4A 100.000 8242 0 0 1 8242 62565226 62556985 0.000000e+00 15221.0
1 TraesCS4A01G065500 chr4A 95.714 70 1 2 8174 8242 30142346 30142414 2.430000e-20 111.0
2 TraesCS4A01G065500 chr4D 90.741 4223 251 58 738 4866 405065371 405061195 0.000000e+00 5504.0
3 TraesCS4A01G065500 chr4D 91.387 2589 157 26 5167 7714 405061195 405058632 0.000000e+00 3485.0
4 TraesCS4A01G065500 chr4D 96.760 463 8 3 7729 8186 405058644 405058184 0.000000e+00 765.0
5 TraesCS4A01G065500 chr4B 89.754 4353 249 86 639 4866 503003149 502998869 0.000000e+00 5385.0
6 TraesCS4A01G065500 chr4B 89.508 2602 172 44 5167 7700 502998869 502996301 0.000000e+00 3199.0
7 TraesCS4A01G065500 chr4B 90.232 604 41 8 2 605 503004566 503003981 0.000000e+00 773.0
8 TraesCS4A01G065500 chr4B 92.391 460 27 7 7732 8186 502996303 502995847 0.000000e+00 649.0
9 TraesCS4A01G065500 chr4B 95.082 61 2 1 8183 8242 631841552 631841492 2.450000e-15 95.3
10 TraesCS4A01G065500 chr2B 83.940 604 91 6 4 605 361281300 361281899 2.580000e-159 573.0
11 TraesCS4A01G065500 chr2B 87.500 208 19 6 4876 5079 423002485 423002281 4.970000e-57 233.0
12 TraesCS4A01G065500 chr2B 92.537 67 4 1 8177 8242 387076181 387076247 2.450000e-15 95.3
13 TraesCS4A01G065500 chr1A 82.979 564 90 5 4 565 589675156 589675715 9.550000e-139 505.0
14 TraesCS4A01G065500 chr1B 82.686 566 92 6 4 565 684220207 684219644 1.600000e-136 497.0
15 TraesCS4A01G065500 chr7B 84.122 296 35 8 4875 5167 585874901 585874615 8.150000e-70 276.0
16 TraesCS4A01G065500 chr7D 86.404 228 29 2 1953 2178 131723658 131723431 1.780000e-61 248.0
17 TraesCS4A01G065500 chr7D 85.780 218 25 4 4865 5079 408020108 408019894 8.320000e-55 226.0
18 TraesCS4A01G065500 chr5A 85.837 233 31 2 1955 2185 444938269 444938037 6.390000e-61 246.0
19 TraesCS4A01G065500 chr5A 86.916 214 21 5 4870 5079 397510397 397510187 4.970000e-57 233.0
20 TraesCS4A01G065500 chr5A 86.321 212 22 4 4874 5079 426551435 426551225 2.990000e-54 224.0
21 TraesCS4A01G065500 chr5B 87.143 210 25 2 4871 5079 386330493 386330701 3.850000e-58 237.0
22 TraesCS4A01G065500 chr6D 87.745 204 19 5 4876 5076 460588009 460588209 4.970000e-57 233.0
23 TraesCS4A01G065500 chr3D 87.440 207 21 4 4876 5079 335673095 335673299 4.970000e-57 233.0
24 TraesCS4A01G065500 chr3D 95.082 61 2 1 8183 8242 165861973 165861913 2.450000e-15 95.3
25 TraesCS4A01G065500 chr2D 87.255 204 19 5 4877 5076 43432226 43432426 8.320000e-55 226.0
26 TraesCS4A01G065500 chr2D 92.647 68 4 1 8176 8242 164992776 164992709 6.810000e-16 97.1
27 TraesCS4A01G065500 chr2D 92.537 67 3 2 8177 8242 548673306 548673241 2.450000e-15 95.3
28 TraesCS4A01G065500 chr2D 91.176 68 4 2 8177 8242 641615184 641615117 3.170000e-14 91.6
29 TraesCS4A01G065500 chr6B 92.754 69 2 3 8176 8242 8402362 8402429 6.810000e-16 97.1
30 TraesCS4A01G065500 chr5D 95.000 60 3 0 8183 8242 240371839 240371780 2.450000e-15 95.3
31 TraesCS4A01G065500 chr7A 88.462 52 4 1 649 700 694199471 694199422 2.480000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G065500 chr4A 62556985 62565226 8241 True 15221.000000 15221 100.000000 1 8242 1 chr4A.!!$R1 8241
1 TraesCS4A01G065500 chr4D 405058184 405065371 7187 True 3251.333333 5504 92.962667 738 8186 3 chr4D.!!$R1 7448
2 TraesCS4A01G065500 chr4B 502995847 503004566 8719 True 2501.500000 5385 90.471250 2 8186 4 chr4B.!!$R2 8184
3 TraesCS4A01G065500 chr2B 361281300 361281899 599 False 573.000000 573 83.940000 4 605 1 chr2B.!!$F1 601
4 TraesCS4A01G065500 chr1A 589675156 589675715 559 False 505.000000 505 82.979000 4 565 1 chr1A.!!$F1 561
5 TraesCS4A01G065500 chr1B 684219644 684220207 563 True 497.000000 497 82.686000 4 565 1 chr1B.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.181350 CCTATTCACTGGCTCCACCC 59.819 60.0 0.00 0.00 37.83 4.61 F
123 124 0.387239 GCCGCTTCGCATCAAGTTTT 60.387 50.0 0.00 0.00 0.00 2.43 F
1898 2740 0.618680 TAGTGCTGGATGGCTCCACT 60.619 55.0 2.10 0.00 46.95 4.00 F
2836 3722 0.260230 TGTGGTTGGAACATGGTGGT 59.740 50.0 0.00 0.00 39.30 4.16 F
4643 5571 0.182537 TGCAACAGCAGTACCAACCT 59.817 50.0 0.00 0.00 33.59 3.50 F
4917 5866 0.031817 CCAAAGGGGGCAGATCCAAT 60.032 55.0 0.00 0.00 36.21 3.16 F
4981 5930 0.035317 TTCTGGTGAGCGCTGAACAT 59.965 50.0 16.83 0.00 0.00 2.71 F
6493 7501 0.185901 AAATCACCACCAGGCTGTGT 59.814 50.0 14.43 8.26 39.06 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2845 0.107993 CACACCATCGCTCTGGTCAT 60.108 55.000 4.21 0.0 46.79 3.06 R
2018 2861 1.202758 AGGATCTCAACCAAACGCACA 60.203 47.619 0.00 0.0 0.00 4.57 R
3862 4767 0.464036 CCTATGCCACCGACAAGCTA 59.536 55.000 0.00 0.0 0.00 3.32 R
4713 5661 0.608130 TGCATTCTACGTGCAGTCCT 59.392 50.000 0.00 0.0 46.76 3.85 R
5518 6469 0.034574 ACAGGATGCAACGCCCATAA 60.035 50.000 0.00 0.0 42.53 1.90 R
6480 7488 0.687354 AGTTCTACACAGCCTGGTGG 59.313 55.000 0.00 0.0 43.08 4.61 R
6786 7794 1.272147 GGAGCCCAGACCTGATTTGTT 60.272 52.381 0.00 0.0 0.00 2.83 R
7722 8739 0.796927 GAAACTTTTCTCGCCTCCCG 59.203 55.000 0.00 0.0 34.41 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.181350 CCTATTCACTGGCTCCACCC 59.819 60.000 0.00 0.00 37.83 4.61
79 80 3.788145 CACCCCCGACCCGCATTA 61.788 66.667 0.00 0.00 0.00 1.90
123 124 0.387239 GCCGCTTCGCATCAAGTTTT 60.387 50.000 0.00 0.00 0.00 2.43
144 145 1.592131 CATCTGGCTCGCTCTGCTC 60.592 63.158 0.00 0.00 0.00 4.26
165 166 1.303888 CAGGTGCTGGACTGCCAAT 60.304 57.895 0.00 0.00 45.41 3.16
201 202 1.918293 TCTTCCCCACGAGCCACAT 60.918 57.895 0.00 0.00 0.00 3.21
213 214 2.648059 GAGCCACATTGCCTTCTATGT 58.352 47.619 0.00 0.00 38.79 2.29
237 238 1.134699 CAAGAGCCCGAGACTATGCAA 60.135 52.381 0.00 0.00 0.00 4.08
265 266 4.521062 CGGGCTGCTCCTTCTCCG 62.521 72.222 0.00 0.00 34.39 4.63
266 267 3.077556 GGGCTGCTCCTTCTCCGA 61.078 66.667 0.00 0.00 34.39 4.55
298 307 3.437049 GCATGAGGTACTTTCTTGGTGTC 59.563 47.826 0.00 0.00 41.55 3.67
299 308 3.380479 TGAGGTACTTTCTTGGTGTCG 57.620 47.619 0.00 0.00 41.55 4.35
300 309 2.960384 TGAGGTACTTTCTTGGTGTCGA 59.040 45.455 0.00 0.00 41.55 4.20
301 310 3.576982 TGAGGTACTTTCTTGGTGTCGAT 59.423 43.478 0.00 0.00 41.55 3.59
302 311 3.926616 AGGTACTTTCTTGGTGTCGATG 58.073 45.455 0.00 0.00 27.25 3.84
303 312 2.415512 GGTACTTTCTTGGTGTCGATGC 59.584 50.000 0.00 0.00 0.00 3.91
304 313 2.254546 ACTTTCTTGGTGTCGATGCA 57.745 45.000 0.00 0.00 0.00 3.96
408 417 2.574018 CCTCGCCTCCATCGCCATA 61.574 63.158 0.00 0.00 0.00 2.74
411 420 1.069765 CGCCTCCATCGCCATACTT 59.930 57.895 0.00 0.00 0.00 2.24
414 423 1.344763 GCCTCCATCGCCATACTTACT 59.655 52.381 0.00 0.00 0.00 2.24
418 427 1.512926 CATCGCCATACTTACTGCCC 58.487 55.000 0.00 0.00 0.00 5.36
426 435 3.312421 CCATACTTACTGCCCGACATTTG 59.688 47.826 0.00 0.00 0.00 2.32
465 474 1.071542 TGTCTCTTTGATGGCGACCAA 59.928 47.619 2.68 0.00 36.95 3.67
559 572 1.645710 AGCCCTAATCATACCCGAGG 58.354 55.000 0.00 0.00 0.00 4.63
578 591 2.772691 CGTAGGCACGGGTCTCTCC 61.773 68.421 0.00 0.00 44.59 3.71
624 683 3.570125 TGTCCGCCTCTATATCTGACTTG 59.430 47.826 0.00 0.00 0.00 3.16
626 685 4.760715 GTCCGCCTCTATATCTGACTTGTA 59.239 45.833 0.00 0.00 0.00 2.41
627 686 5.241064 GTCCGCCTCTATATCTGACTTGTAA 59.759 44.000 0.00 0.00 0.00 2.41
628 687 5.241064 TCCGCCTCTATATCTGACTTGTAAC 59.759 44.000 0.00 0.00 0.00 2.50
629 688 5.009710 CCGCCTCTATATCTGACTTGTAACA 59.990 44.000 0.00 0.00 0.00 2.41
630 689 5.915758 CGCCTCTATATCTGACTTGTAACAC 59.084 44.000 0.00 0.00 0.00 3.32
631 690 6.238786 CGCCTCTATATCTGACTTGTAACACT 60.239 42.308 0.00 0.00 0.00 3.55
634 1445 9.562408 CCTCTATATCTGACTTGTAACACTCTA 57.438 37.037 0.00 0.00 0.00 2.43
671 1482 7.896811 TCCTATCTATCAATGCAAAGATACGT 58.103 34.615 7.22 0.00 31.38 3.57
724 1535 7.378181 ACATGCTTTCTTTTAACCCAATACAG 58.622 34.615 0.00 0.00 0.00 2.74
728 1539 7.232534 TGCTTTCTTTTAACCCAATACAGTCAT 59.767 33.333 0.00 0.00 0.00 3.06
741 1552 7.382488 CCCAATACAGTCATTGATACTAACTCG 59.618 40.741 0.00 0.00 38.01 4.18
742 1553 7.096023 CCAATACAGTCATTGATACTAACTCGC 60.096 40.741 0.00 0.00 38.01 5.03
768 1606 3.639162 TTGCAAACGTCAGGCAAAG 57.361 47.368 16.08 0.00 43.82 2.77
794 1632 1.937359 CAAGCGAACGTAAGCAACAG 58.063 50.000 15.93 1.28 45.62 3.16
829 1667 0.689623 ACTCTGGCTCACAAAGGGAG 59.310 55.000 0.00 0.00 35.47 4.30
970 1808 1.374252 CGTCACTCCCAACTTCCCG 60.374 63.158 0.00 0.00 0.00 5.14
984 1822 2.995574 CCCGACCCTCCTGACGTT 60.996 66.667 0.00 0.00 0.00 3.99
1151 1991 1.410882 CCTCCCAATCCTCGAGTTCTC 59.589 57.143 12.31 0.00 0.00 2.87
1153 1993 3.556999 CTCCCAATCCTCGAGTTCTCTA 58.443 50.000 12.31 0.00 0.00 2.43
1155 1995 4.145807 TCCCAATCCTCGAGTTCTCTATC 58.854 47.826 12.31 0.00 0.00 2.08
1429 2270 1.642037 CGAGTCTAGACGGCCGTTCA 61.642 60.000 34.65 21.72 36.20 3.18
1569 2411 4.081365 TGCTATCCGTTGTTCAGTATTCCA 60.081 41.667 0.00 0.00 0.00 3.53
1608 2450 5.468072 CCAGAACATATGTGGCTCAGATAAC 59.532 44.000 9.63 0.00 35.38 1.89
1623 2465 5.611374 TCAGATAACCCTATAAACTGCTGC 58.389 41.667 0.00 0.00 0.00 5.25
1715 2557 3.941483 AGTTGAAGATATGTTTGGAGCGG 59.059 43.478 0.00 0.00 0.00 5.52
1748 2590 4.510571 GGTAGTAAGTGTTGGGTGTATGG 58.489 47.826 0.00 0.00 0.00 2.74
1869 2711 1.920574 CTCGATTAACGCCACACTCAG 59.079 52.381 0.00 0.00 42.26 3.35
1883 2725 5.403246 CCACACTCAGTTAAGTAGCTAGTG 58.597 45.833 0.73 3.89 38.97 2.74
1898 2740 0.618680 TAGTGCTGGATGGCTCCACT 60.619 55.000 2.10 0.00 46.95 4.00
1998 2841 0.869880 GCGCCCGACCAAATATTTGC 60.870 55.000 20.67 8.88 36.86 3.68
2002 2845 2.285083 CCCGACCAAATATTTGCTCGA 58.715 47.619 32.61 0.00 44.64 4.04
2038 2881 1.202758 TGTGCGTTTGGTTGAGATCCT 60.203 47.619 0.00 0.00 0.00 3.24
2053 2896 5.693961 TGAGATCCTATTATTTGGCTTGCA 58.306 37.500 0.00 0.00 0.00 4.08
2078 2921 1.377333 CTGTCCGCCCTTCCCTTTC 60.377 63.158 0.00 0.00 0.00 2.62
2083 2926 1.850345 TCCGCCCTTCCCTTTCATTAT 59.150 47.619 0.00 0.00 0.00 1.28
2314 3158 5.675538 AGCTCCAACACAAGGATCTATTAC 58.324 41.667 0.00 0.00 33.99 1.89
2367 3223 5.049474 GCAAAACTTTTGGTGGGATGATTTC 60.049 40.000 14.68 0.00 0.00 2.17
2368 3224 4.519540 AACTTTTGGTGGGATGATTTCG 57.480 40.909 0.00 0.00 0.00 3.46
2369 3225 3.496331 ACTTTTGGTGGGATGATTTCGT 58.504 40.909 0.00 0.00 0.00 3.85
2370 3226 3.895041 ACTTTTGGTGGGATGATTTCGTT 59.105 39.130 0.00 0.00 0.00 3.85
2371 3227 3.932545 TTTGGTGGGATGATTTCGTTG 57.067 42.857 0.00 0.00 0.00 4.10
2372 3228 2.577606 TGGTGGGATGATTTCGTTGT 57.422 45.000 0.00 0.00 0.00 3.32
2373 3229 2.158559 TGGTGGGATGATTTCGTTGTG 58.841 47.619 0.00 0.00 0.00 3.33
2374 3230 2.159382 GGTGGGATGATTTCGTTGTGT 58.841 47.619 0.00 0.00 0.00 3.72
2375 3231 2.095263 GGTGGGATGATTTCGTTGTGTG 60.095 50.000 0.00 0.00 0.00 3.82
2376 3232 2.811431 GTGGGATGATTTCGTTGTGTGA 59.189 45.455 0.00 0.00 0.00 3.58
2377 3233 3.440173 GTGGGATGATTTCGTTGTGTGAT 59.560 43.478 0.00 0.00 0.00 3.06
2378 3234 4.078537 TGGGATGATTTCGTTGTGTGATT 58.921 39.130 0.00 0.00 0.00 2.57
2382 3238 3.218453 TGATTTCGTTGTGTGATTGGGT 58.782 40.909 0.00 0.00 0.00 4.51
2467 3323 9.651913 TGTTTCAAATCCATAAATCTAAAAGGC 57.348 29.630 0.00 0.00 0.00 4.35
2468 3324 9.875691 GTTTCAAATCCATAAATCTAAAAGGCT 57.124 29.630 0.00 0.00 0.00 4.58
2471 3327 9.131791 TCAAATCCATAAATCTAAAAGGCTACC 57.868 33.333 0.00 0.00 0.00 3.18
2474 3330 7.208064 TCCATAAATCTAAAAGGCTACCAGT 57.792 36.000 0.00 0.00 0.00 4.00
2512 3368 0.322008 CAACCCTCAAGAGAGTGCCC 60.322 60.000 0.00 0.00 40.40 5.36
2534 3390 4.098654 CCAGTCGTCTCATTTCTCCATACT 59.901 45.833 0.00 0.00 0.00 2.12
2535 3391 5.039984 CAGTCGTCTCATTTCTCCATACTG 58.960 45.833 0.00 0.00 0.00 2.74
2536 3392 4.950475 AGTCGTCTCATTTCTCCATACTGA 59.050 41.667 0.00 0.00 0.00 3.41
2538 3394 5.918011 GTCGTCTCATTTCTCCATACTGATC 59.082 44.000 0.00 0.00 0.00 2.92
2539 3395 5.594317 TCGTCTCATTTCTCCATACTGATCA 59.406 40.000 0.00 0.00 0.00 2.92
2540 3396 6.266330 TCGTCTCATTTCTCCATACTGATCAT 59.734 38.462 0.00 0.00 0.00 2.45
2541 3397 6.365518 CGTCTCATTTCTCCATACTGATCATG 59.634 42.308 0.00 0.00 0.00 3.07
2542 3398 6.147492 GTCTCATTTCTCCATACTGATCATGC 59.853 42.308 0.00 0.00 0.00 4.06
2543 3399 5.932455 TCATTTCTCCATACTGATCATGCA 58.068 37.500 0.00 0.00 0.00 3.96
2544 3400 6.358991 TCATTTCTCCATACTGATCATGCAA 58.641 36.000 0.00 0.00 0.00 4.08
2545 3401 7.002276 TCATTTCTCCATACTGATCATGCAAT 58.998 34.615 0.00 0.00 0.00 3.56
2546 3402 7.504574 TCATTTCTCCATACTGATCATGCAATT 59.495 33.333 0.00 0.00 0.00 2.32
2547 3403 7.649533 TTTCTCCATACTGATCATGCAATTT 57.350 32.000 0.00 0.00 0.00 1.82
2549 3405 7.734924 TCTCCATACTGATCATGCAATTTAC 57.265 36.000 0.00 0.00 0.00 2.01
2550 3406 7.281841 TCTCCATACTGATCATGCAATTTACA 58.718 34.615 0.00 0.00 0.00 2.41
2635 3495 9.331282 GGTCTAGAATATTTATGTGATATGGGC 57.669 37.037 0.00 0.00 0.00 5.36
2692 3552 4.174009 GCTTCAGTATGCGTGAGACTTAA 58.826 43.478 0.00 0.00 34.76 1.85
2744 3604 9.546909 GTATAATGCATCCATTTTAATCAGTCG 57.453 33.333 0.00 0.00 41.68 4.18
2752 3612 6.378582 TCCATTTTAATCAGTCGTGAAAAGC 58.621 36.000 0.00 0.00 35.88 3.51
2755 3615 5.856126 TTTAATCAGTCGTGAAAAGCGAT 57.144 34.783 0.00 0.00 40.59 4.58
2836 3722 0.260230 TGTGGTTGGAACATGGTGGT 59.740 50.000 0.00 0.00 39.30 4.16
2843 3729 1.283613 TGGAACATGGTGGTGTATCCC 59.716 52.381 0.00 0.00 32.80 3.85
2882 3768 4.028993 ACCCTGTGGACACGATTAATTT 57.971 40.909 0.00 0.00 34.81 1.82
2904 3790 3.670377 GGTTCAGGTGTTGCGCCC 61.670 66.667 4.18 0.00 33.99 6.13
2917 3803 3.074281 CGCCCCACACCTCCTTAA 58.926 61.111 0.00 0.00 0.00 1.85
2925 3811 5.337250 GCCCCACACCTCCTTAATTAAAAAG 60.337 44.000 0.00 0.18 0.00 2.27
2946 3832 2.041928 CAGGGGCTCCTCCTCCTT 59.958 66.667 0.00 0.00 42.67 3.36
2950 3839 1.306568 GGGCTCCTCCTCCTTCTGT 60.307 63.158 0.00 0.00 34.39 3.41
2951 3840 1.334384 GGGCTCCTCCTCCTTCTGTC 61.334 65.000 0.00 0.00 34.39 3.51
2952 3841 0.325203 GGCTCCTCCTCCTTCTGTCT 60.325 60.000 0.00 0.00 0.00 3.41
2953 3842 1.063567 GGCTCCTCCTCCTTCTGTCTA 60.064 57.143 0.00 0.00 0.00 2.59
2954 3843 2.306847 GCTCCTCCTCCTTCTGTCTAG 58.693 57.143 0.00 0.00 0.00 2.43
3118 4010 5.358160 ACCAATGCTAAAGCCAGACTTAATC 59.642 40.000 0.00 0.00 37.75 1.75
3169 4061 8.995220 GTATGTATCAAAGTACTTGTTGGTTCA 58.005 33.333 9.34 5.67 36.34 3.18
3171 4063 6.824196 TGTATCAAAGTACTTGTTGGTTCACA 59.176 34.615 9.34 0.86 36.34 3.58
3176 4068 6.628919 AAGTACTTGTTGGTTCACATTACC 57.371 37.500 7.48 0.00 36.17 2.85
3193 4085 6.202188 CACATTACCGTATCACCAGAATAACC 59.798 42.308 0.00 0.00 0.00 2.85
3216 4108 6.540914 ACCGTCTTGAAACTTCTCATGTTTAA 59.459 34.615 0.00 0.00 37.70 1.52
3217 4109 7.228706 ACCGTCTTGAAACTTCTCATGTTTAAT 59.771 33.333 0.00 0.00 37.70 1.40
3265 4161 2.365617 CTGTGAGTATTATCCTGGCGGT 59.634 50.000 0.00 0.00 0.00 5.68
3306 4202 7.722795 TTCTTTCGAAGTCATTGTATGAACA 57.277 32.000 0.00 0.00 41.69 3.18
3438 4334 8.829373 AAGACTGGAATTTTCTAATATGCCTT 57.171 30.769 0.00 0.00 0.00 4.35
3439 4335 9.920946 AAGACTGGAATTTTCTAATATGCCTTA 57.079 29.630 0.00 0.00 0.00 2.69
3536 4432 7.893124 ATGAATACAATCAATTCCAGCTCTT 57.107 32.000 0.00 0.00 33.28 2.85
3546 4442 5.045651 TCAATTCCAGCTCTTTACCAGATCA 60.046 40.000 0.00 0.00 0.00 2.92
3635 4531 6.603237 TTGTCAATTATATTCAGCGTCCTG 57.397 37.500 0.00 0.00 40.54 3.86
3752 4657 7.530426 AAATTTTGAGATTGACAGCTAACCT 57.470 32.000 0.00 0.00 0.00 3.50
3823 4728 4.403752 CAGAGGACCTTCACATGATGACTA 59.596 45.833 0.00 0.00 36.92 2.59
3851 4756 3.782523 AGAGAATGGGTGCTAATTCCTCA 59.217 43.478 0.00 0.00 34.02 3.86
3857 4762 0.947244 GTGCTAATTCCTCATGCCCG 59.053 55.000 0.00 0.00 0.00 6.13
3862 4767 3.319122 GCTAATTCCTCATGCCCGAATTT 59.681 43.478 15.23 5.29 37.40 1.82
3871 4776 1.083489 TGCCCGAATTTAGCTTGTCG 58.917 50.000 0.00 0.00 0.00 4.35
3976 4881 2.480419 CCACCGATTTCACTGACTTGAC 59.520 50.000 0.00 0.00 0.00 3.18
4007 4912 7.124052 TCCTTACTTGTTCTAGCTATACCACT 58.876 38.462 0.00 0.00 0.00 4.00
4132 5037 3.957591 AATATGTGCACATTGCCACAA 57.042 38.095 35.45 17.47 44.23 3.33
4146 5051 8.169910 CACATTGCCACAACAACAAATATATTG 58.830 33.333 0.00 0.00 31.03 1.90
4183 5102 5.107607 GCGACGAAATGTGTCTTAAAGAAGA 60.108 40.000 0.00 0.00 39.47 2.87
4217 5136 3.616956 TCAGATCCAGTTGTGTCCATC 57.383 47.619 0.00 0.00 0.00 3.51
4227 5146 6.042093 TCCAGTTGTGTCCATCTATATCTTCC 59.958 42.308 0.00 0.00 0.00 3.46
4229 5148 6.927936 CAGTTGTGTCCATCTATATCTTCCTG 59.072 42.308 0.00 0.00 0.00 3.86
4288 5208 7.994425 TGATTACGTAATTGCCATAATCCAT 57.006 32.000 21.18 0.00 33.27 3.41
4289 5209 7.815641 TGATTACGTAATTGCCATAATCCATG 58.184 34.615 21.18 0.00 33.27 3.66
4290 5210 7.446931 TGATTACGTAATTGCCATAATCCATGT 59.553 33.333 21.18 0.00 33.27 3.21
4331 5257 6.024552 TGAAATAGCAATCCAAAAGGTCAC 57.975 37.500 0.00 0.00 0.00 3.67
4351 5277 7.394359 AGGTCACATGCAAGTAATTCAAGTAAT 59.606 33.333 0.00 0.00 0.00 1.89
4352 5278 8.028938 GGTCACATGCAAGTAATTCAAGTAATT 58.971 33.333 0.00 0.00 40.87 1.40
4367 5293 8.556213 TTCAAGTAATTAAGCTACCGTTGAAT 57.444 30.769 0.00 0.00 0.00 2.57
4374 5300 7.624360 ATTAAGCTACCGTTGAATCATTCAA 57.376 32.000 8.85 8.85 46.68 2.69
4388 5314 6.762661 TGAATCATTCAATATTGCTCTCACGA 59.237 34.615 10.76 1.18 36.59 4.35
4401 5327 4.522022 TGCTCTCACGATCACTATCATGAT 59.478 41.667 13.81 13.81 42.15 2.45
4409 5335 6.088217 CACGATCACTATCATGATACGGTTTC 59.912 42.308 20.29 12.52 39.48 2.78
4415 5341 3.485463 TCATGATACGGTTTCCCATCC 57.515 47.619 0.00 0.00 0.00 3.51
4432 5358 0.814457 TCCTGGTTGTTGTTGTGCAC 59.186 50.000 10.75 10.75 0.00 4.57
4433 5359 0.529833 CCTGGTTGTTGTTGTGCACA 59.470 50.000 17.42 17.42 0.00 4.57
4515 5443 9.941325 AAAAATAAGATTGTTCCAATGCACATA 57.059 25.926 0.00 0.00 0.00 2.29
4518 5446 9.941325 AATAAGATTGTTCCAATGCACATAAAA 57.059 25.926 0.00 0.00 0.00 1.52
4642 5570 1.028905 TTGCAACAGCAGTACCAACC 58.971 50.000 0.00 0.00 39.82 3.77
4643 5571 0.182537 TGCAACAGCAGTACCAACCT 59.817 50.000 0.00 0.00 33.59 3.50
4644 5572 0.875059 GCAACAGCAGTACCAACCTC 59.125 55.000 0.00 0.00 0.00 3.85
4713 5661 3.504134 GCTCGAGATCTAGAAGGCACATA 59.496 47.826 18.75 0.00 0.00 2.29
4717 5665 4.083003 CGAGATCTAGAAGGCACATAGGAC 60.083 50.000 0.00 0.00 0.00 3.85
4722 5670 1.065854 AGAAGGCACATAGGACTGCAC 60.066 52.381 0.00 0.00 34.90 4.57
4788 5736 6.845908 AGCCAACTATATCATCCATCTGTTT 58.154 36.000 0.00 0.00 0.00 2.83
4792 5740 8.562892 CCAACTATATCATCCATCTGTTTGAAC 58.437 37.037 0.00 0.00 0.00 3.18
4795 5743 9.159254 ACTATATCATCCATCTGTTTGAACCTA 57.841 33.333 0.00 0.00 0.00 3.08
4805 5753 9.573133 CCATCTGTTTGAACCTAAATAATTGTC 57.427 33.333 0.00 0.00 0.00 3.18
4867 5816 8.980481 AGAATACCCATGTTTCGAAATAATCT 57.020 30.769 14.69 6.32 0.00 2.40
4915 5864 3.099171 CCAAAGGGGGCAGATCCA 58.901 61.111 0.00 0.00 36.21 3.41
4916 5865 1.387737 CCAAAGGGGGCAGATCCAA 59.612 57.895 0.00 0.00 36.21 3.53
4917 5866 0.031817 CCAAAGGGGGCAGATCCAAT 60.032 55.000 0.00 0.00 36.21 3.16
4918 5867 1.623279 CCAAAGGGGGCAGATCCAATT 60.623 52.381 0.00 0.00 36.21 2.32
4919 5868 2.359143 CCAAAGGGGGCAGATCCAATTA 60.359 50.000 0.00 0.00 36.21 1.40
4920 5869 3.373830 CAAAGGGGGCAGATCCAATTAA 58.626 45.455 0.00 0.00 36.21 1.40
4921 5870 3.969312 CAAAGGGGGCAGATCCAATTAAT 59.031 43.478 0.00 0.00 36.21 1.40
4922 5871 3.532641 AGGGGGCAGATCCAATTAATC 57.467 47.619 0.00 0.00 36.21 1.75
4923 5872 3.066704 AGGGGGCAGATCCAATTAATCT 58.933 45.455 0.00 0.00 36.21 2.40
4924 5873 3.075134 AGGGGGCAGATCCAATTAATCTC 59.925 47.826 0.62 0.00 36.21 2.75
4925 5874 3.077359 GGGGCAGATCCAATTAATCTCG 58.923 50.000 0.62 0.00 36.21 4.04
4926 5875 3.077359 GGGCAGATCCAATTAATCTCGG 58.923 50.000 0.62 0.00 36.21 4.63
4927 5876 2.485814 GGCAGATCCAATTAATCTCGGC 59.514 50.000 0.62 2.99 31.05 5.54
4928 5877 2.485814 GCAGATCCAATTAATCTCGGCC 59.514 50.000 0.00 0.00 31.05 6.13
4929 5878 3.743521 CAGATCCAATTAATCTCGGCCA 58.256 45.455 2.24 0.00 31.05 5.36
4930 5879 4.330250 CAGATCCAATTAATCTCGGCCAT 58.670 43.478 2.24 0.00 31.05 4.40
4931 5880 4.394300 CAGATCCAATTAATCTCGGCCATC 59.606 45.833 2.24 0.00 31.05 3.51
4932 5881 3.855255 TCCAATTAATCTCGGCCATCA 57.145 42.857 2.24 0.00 0.00 3.07
4933 5882 4.163441 TCCAATTAATCTCGGCCATCAA 57.837 40.909 2.24 0.00 0.00 2.57
4934 5883 4.531854 TCCAATTAATCTCGGCCATCAAA 58.468 39.130 2.24 0.00 0.00 2.69
4935 5884 4.952957 TCCAATTAATCTCGGCCATCAAAA 59.047 37.500 2.24 0.00 0.00 2.44
4936 5885 5.043248 CCAATTAATCTCGGCCATCAAAAC 58.957 41.667 2.24 0.00 0.00 2.43
4937 5886 5.394005 CCAATTAATCTCGGCCATCAAAACA 60.394 40.000 2.24 0.00 0.00 2.83
4938 5887 6.275335 CAATTAATCTCGGCCATCAAAACAT 58.725 36.000 2.24 0.00 0.00 2.71
4939 5888 3.788333 AATCTCGGCCATCAAAACATG 57.212 42.857 2.24 0.00 0.00 3.21
4940 5889 2.198827 TCTCGGCCATCAAAACATGT 57.801 45.000 2.24 0.00 0.00 3.21
4941 5890 2.083774 TCTCGGCCATCAAAACATGTC 58.916 47.619 2.24 0.00 0.00 3.06
4942 5891 1.811965 CTCGGCCATCAAAACATGTCA 59.188 47.619 2.24 0.00 0.00 3.58
4943 5892 2.228582 CTCGGCCATCAAAACATGTCAA 59.771 45.455 2.24 0.00 0.00 3.18
4944 5893 2.824936 TCGGCCATCAAAACATGTCAAT 59.175 40.909 2.24 0.00 0.00 2.57
4945 5894 3.119531 TCGGCCATCAAAACATGTCAATC 60.120 43.478 2.24 0.00 0.00 2.67
4946 5895 3.524541 GGCCATCAAAACATGTCAATCC 58.475 45.455 0.00 0.00 0.00 3.01
4947 5896 3.181397 GCCATCAAAACATGTCAATCCG 58.819 45.455 0.00 0.00 0.00 4.18
4948 5897 3.119531 GCCATCAAAACATGTCAATCCGA 60.120 43.478 0.00 0.00 0.00 4.55
4949 5898 4.414852 CCATCAAAACATGTCAATCCGAC 58.585 43.478 0.00 0.00 45.61 4.79
4959 5908 3.712091 GTCAATCCGACGACCTAGATT 57.288 47.619 0.00 0.00 34.19 2.40
4960 5909 3.372954 GTCAATCCGACGACCTAGATTG 58.627 50.000 14.07 14.07 44.44 2.67
4961 5910 2.128035 CAATCCGACGACCTAGATTGC 58.872 52.381 9.72 0.00 39.20 3.56
4962 5911 1.693627 ATCCGACGACCTAGATTGCT 58.306 50.000 0.00 0.00 0.00 3.91
4963 5912 1.471119 TCCGACGACCTAGATTGCTT 58.529 50.000 0.00 0.00 0.00 3.91
4964 5913 1.404391 TCCGACGACCTAGATTGCTTC 59.596 52.381 0.00 0.00 0.00 3.86
4965 5914 1.405821 CCGACGACCTAGATTGCTTCT 59.594 52.381 0.00 0.00 38.57 2.85
4966 5915 2.455032 CGACGACCTAGATTGCTTCTG 58.545 52.381 0.00 0.00 35.79 3.02
4967 5916 2.796383 CGACGACCTAGATTGCTTCTGG 60.796 54.545 0.00 0.00 35.79 3.86
4968 5917 2.166664 GACGACCTAGATTGCTTCTGGT 59.833 50.000 0.00 9.41 38.08 4.00
4969 5918 2.093973 ACGACCTAGATTGCTTCTGGTG 60.094 50.000 12.45 9.20 36.56 4.17
4970 5919 2.166459 CGACCTAGATTGCTTCTGGTGA 59.834 50.000 12.45 0.00 36.56 4.02
4971 5920 3.736433 CGACCTAGATTGCTTCTGGTGAG 60.736 52.174 12.45 6.44 36.56 3.51
4972 5921 2.093235 ACCTAGATTGCTTCTGGTGAGC 60.093 50.000 0.00 0.00 35.69 4.26
4973 5922 2.200067 CTAGATTGCTTCTGGTGAGCG 58.800 52.381 0.62 0.00 35.79 5.03
4974 5923 1.023513 AGATTGCTTCTGGTGAGCGC 61.024 55.000 0.00 0.00 31.79 5.92
4975 5924 1.002868 ATTGCTTCTGGTGAGCGCT 60.003 52.632 11.27 11.27 0.00 5.92
4976 5925 1.303799 ATTGCTTCTGGTGAGCGCTG 61.304 55.000 18.48 0.00 0.00 5.18
4977 5926 2.047844 GCTTCTGGTGAGCGCTGA 60.048 61.111 18.48 1.75 0.00 4.26
4978 5927 1.669115 GCTTCTGGTGAGCGCTGAA 60.669 57.895 18.48 11.15 0.00 3.02
4979 5928 1.905922 GCTTCTGGTGAGCGCTGAAC 61.906 60.000 18.48 11.09 0.00 3.18
4980 5929 0.601046 CTTCTGGTGAGCGCTGAACA 60.601 55.000 18.48 16.77 0.00 3.18
4981 5930 0.035317 TTCTGGTGAGCGCTGAACAT 59.965 50.000 16.83 0.00 0.00 2.71
4982 5931 0.671472 TCTGGTGAGCGCTGAACATG 60.671 55.000 16.83 9.97 0.00 3.21
4983 5932 0.952497 CTGGTGAGCGCTGAACATGT 60.952 55.000 16.83 0.00 0.00 3.21
4984 5933 0.534877 TGGTGAGCGCTGAACATGTT 60.535 50.000 18.48 11.78 0.00 2.71
4985 5934 0.593128 GGTGAGCGCTGAACATGTTT 59.407 50.000 18.48 0.00 0.00 2.83
4986 5935 1.804151 GGTGAGCGCTGAACATGTTTA 59.196 47.619 18.48 7.80 0.00 2.01
4987 5936 2.159653 GGTGAGCGCTGAACATGTTTAG 60.160 50.000 22.49 22.49 0.00 1.85
4988 5937 1.464608 TGAGCGCTGAACATGTTTAGC 59.535 47.619 33.93 33.93 45.29 3.09
4992 5941 1.606606 GCTGAACATGTTTAGCGTGC 58.393 50.000 31.70 15.86 41.25 5.34
4993 5942 1.069296 GCTGAACATGTTTAGCGTGCA 60.069 47.619 31.70 14.75 41.25 4.57
4994 5943 2.604373 GCTGAACATGTTTAGCGTGCAA 60.604 45.455 31.70 3.51 41.25 4.08
4995 5944 3.825308 CTGAACATGTTTAGCGTGCAAT 58.175 40.909 16.42 0.00 37.62 3.56
4996 5945 4.229096 CTGAACATGTTTAGCGTGCAATT 58.771 39.130 16.42 0.00 37.62 2.32
4997 5946 5.363979 TGAACATGTTTAGCGTGCAATTA 57.636 34.783 13.36 0.00 37.62 1.40
4998 5947 5.763088 TGAACATGTTTAGCGTGCAATTAA 58.237 33.333 13.36 0.00 37.62 1.40
4999 5948 6.385843 TGAACATGTTTAGCGTGCAATTAAT 58.614 32.000 13.36 0.00 37.62 1.40
5000 5949 7.530863 TGAACATGTTTAGCGTGCAATTAATA 58.469 30.769 13.36 0.00 37.62 0.98
5001 5950 8.187480 TGAACATGTTTAGCGTGCAATTAATAT 58.813 29.630 13.36 0.00 37.62 1.28
5002 5951 8.560576 AACATGTTTAGCGTGCAATTAATATC 57.439 30.769 4.92 0.00 37.62 1.63
5003 5952 7.702386 ACATGTTTAGCGTGCAATTAATATCA 58.298 30.769 0.00 0.00 37.62 2.15
5004 5953 8.352201 ACATGTTTAGCGTGCAATTAATATCAT 58.648 29.630 0.00 0.00 37.62 2.45
5005 5954 9.824534 CATGTTTAGCGTGCAATTAATATCATA 57.175 29.630 0.00 0.00 0.00 2.15
5006 5955 9.825972 ATGTTTAGCGTGCAATTAATATCATAC 57.174 29.630 0.00 0.00 0.00 2.39
5007 5956 8.831550 TGTTTAGCGTGCAATTAATATCATACA 58.168 29.630 0.00 0.00 0.00 2.29
5008 5957 9.658475 GTTTAGCGTGCAATTAATATCATACAA 57.342 29.630 0.00 0.00 0.00 2.41
5031 5980 9.346005 ACAAATTATCAACATATGAGCAGATCA 57.654 29.630 10.38 0.00 42.53 2.92
5032 5981 9.608617 CAAATTATCAACATATGAGCAGATCAC 57.391 33.333 10.38 0.00 42.53 3.06
5033 5982 8.913487 AATTATCAACATATGAGCAGATCACA 57.087 30.769 10.38 0.00 42.53 3.58
5034 5983 9.516546 AATTATCAACATATGAGCAGATCACAT 57.483 29.630 10.38 0.00 42.53 3.21
5038 5987 8.913487 TCAACATATGAGCAGATCACATAATT 57.087 30.769 10.38 0.00 41.91 1.40
5042 5991 9.783081 ACATATGAGCAGATCACATAATTAACA 57.217 29.630 10.38 0.00 41.91 2.41
5044 5993 6.588348 TGAGCAGATCACATAATTAACACG 57.412 37.500 0.00 0.00 31.12 4.49
5045 5994 6.106003 TGAGCAGATCACATAATTAACACGT 58.894 36.000 0.00 0.00 31.12 4.49
5046 5995 7.262048 TGAGCAGATCACATAATTAACACGTA 58.738 34.615 0.00 0.00 31.12 3.57
5047 5996 7.762159 TGAGCAGATCACATAATTAACACGTAA 59.238 33.333 0.00 0.00 31.12 3.18
5048 5997 8.662781 AGCAGATCACATAATTAACACGTAAT 57.337 30.769 0.00 0.00 33.58 1.89
5049 5998 9.109393 AGCAGATCACATAATTAACACGTAATT 57.891 29.630 0.00 0.00 43.44 1.40
5050 5999 9.158364 GCAGATCACATAATTAACACGTAATTG 57.842 33.333 5.27 0.00 41.55 2.32
5061 6010 9.457436 AATTAACACGTAATTGATTTCCTACCT 57.543 29.630 0.00 0.00 40.27 3.08
5063 6012 9.941325 TTAACACGTAATTGATTTCCTACCTAA 57.059 29.630 0.00 0.00 0.00 2.69
5084 6033 8.965819 ACCTAATATAAACATGCAATTGACACA 58.034 29.630 10.34 0.00 0.00 3.72
5085 6034 9.970395 CCTAATATAAACATGCAATTGACACAT 57.030 29.630 10.34 0.02 0.00 3.21
5091 6040 9.872721 ATAAACATGCAATTGACACATAATTGA 57.127 25.926 10.34 0.00 44.37 2.57
5092 6041 8.780846 AAACATGCAATTGACACATAATTGAT 57.219 26.923 10.34 3.37 44.37 2.57
5093 6042 9.872721 AAACATGCAATTGACACATAATTGATA 57.127 25.926 10.34 3.49 44.37 2.15
5095 6044 9.687210 ACATGCAATTGACACATAATTGATATC 57.313 29.630 10.34 0.00 44.37 1.63
5096 6045 9.135843 CATGCAATTGACACATAATTGATATCC 57.864 33.333 10.34 0.00 44.37 2.59
5097 6046 8.467963 TGCAATTGACACATAATTGATATCCT 57.532 30.769 10.34 0.00 44.37 3.24
5098 6047 9.571816 TGCAATTGACACATAATTGATATCCTA 57.428 29.630 10.34 0.00 44.37 2.94
5099 6048 9.831737 GCAATTGACACATAATTGATATCCTAC 57.168 33.333 10.34 0.00 44.37 3.18
5103 6052 9.913310 TTGACACATAATTGATATCCTACCAAA 57.087 29.630 0.00 0.00 0.00 3.28
5135 6084 9.193806 ACATGCAATTAATTTCCTCTCTAATGT 57.806 29.630 0.00 0.00 0.00 2.71
5143 6092 6.663944 ATTTCCTCTCTAATGTTAACGTGC 57.336 37.500 0.00 0.00 0.00 5.34
5144 6093 4.794278 TCCTCTCTAATGTTAACGTGCA 57.206 40.909 0.00 0.00 0.00 4.57
5145 6094 5.339008 TCCTCTCTAATGTTAACGTGCAT 57.661 39.130 0.00 0.00 0.00 3.96
5146 6095 5.730550 TCCTCTCTAATGTTAACGTGCATT 58.269 37.500 14.65 14.65 38.63 3.56
5147 6096 5.580691 TCCTCTCTAATGTTAACGTGCATTG 59.419 40.000 17.82 10.93 36.75 2.82
5148 6097 5.216566 TCTCTAATGTTAACGTGCATTGC 57.783 39.130 17.82 0.46 36.75 3.56
5149 6098 4.693095 TCTCTAATGTTAACGTGCATTGCA 59.307 37.500 7.38 7.38 36.75 4.08
5161 6110 3.469899 TGCATTGCACATACGAGTTTC 57.530 42.857 7.38 0.00 31.71 2.78
5162 6111 2.161410 TGCATTGCACATACGAGTTTCC 59.839 45.455 7.38 0.00 31.71 3.13
5163 6112 2.420022 GCATTGCACATACGAGTTTCCT 59.580 45.455 3.15 0.00 0.00 3.36
5164 6113 3.621268 GCATTGCACATACGAGTTTCCTA 59.379 43.478 3.15 0.00 0.00 2.94
5165 6114 4.260375 GCATTGCACATACGAGTTTCCTAG 60.260 45.833 3.15 0.00 0.00 3.02
5181 6130 8.605325 AGTTTCCTAGTTGTAGCTAAGGATTA 57.395 34.615 11.13 2.03 0.00 1.75
5246 6195 8.323140 GCTTCGAAATAAATCATCAACAATTGG 58.677 33.333 10.83 0.00 0.00 3.16
5261 6210 1.909700 ATTGGTTGGACGATGTGCTT 58.090 45.000 0.00 0.00 0.00 3.91
5301 6250 7.422465 AACAATGTGGGCTCATATTTTGTAT 57.578 32.000 5.72 0.00 33.35 2.29
5343 6293 7.341769 TGCTTAATTAGGTTTATTGGAGCACAT 59.658 33.333 0.00 0.00 34.00 3.21
5359 6310 3.696051 AGCACATTAATCGGTTGATTGCT 59.304 39.130 13.30 13.30 44.46 3.91
5446 6397 9.474313 TGGTTTAATTCTTTATTGAGGCTACAT 57.526 29.630 0.00 0.00 0.00 2.29
5447 6398 9.736023 GGTTTAATTCTTTATTGAGGCTACATG 57.264 33.333 0.00 0.00 0.00 3.21
5450 6401 6.949352 ATTCTTTATTGAGGCTACATGTGG 57.051 37.500 9.11 6.75 0.00 4.17
5487 6438 1.312815 GGTTGGAGCATGCTGGATAC 58.687 55.000 28.27 16.47 0.00 2.24
5516 6467 3.016736 TGCTAAGAAATGCTGGTAAGGC 58.983 45.455 0.00 0.00 0.00 4.35
5518 6469 2.200373 AAGAAATGCTGGTAAGGCGT 57.800 45.000 0.00 0.00 0.00 5.68
5559 6510 4.137116 GTGTAATCACATGTCCAGCCTA 57.863 45.455 0.00 0.00 43.37 3.93
5578 6529 4.735369 CCTAGATCTTAAGCTGGAGGAGA 58.265 47.826 0.00 0.00 0.00 3.71
5589 6540 1.757118 CTGGAGGAGAATGGAGCGTTA 59.243 52.381 0.00 0.00 0.00 3.18
5606 6557 3.861131 GCGTTATATTCCTGATCCGTGCT 60.861 47.826 0.00 0.00 0.00 4.40
5607 6558 4.617530 GCGTTATATTCCTGATCCGTGCTA 60.618 45.833 0.00 0.00 0.00 3.49
5608 6559 4.857588 CGTTATATTCCTGATCCGTGCTAC 59.142 45.833 0.00 0.00 0.00 3.58
5609 6560 5.564063 CGTTATATTCCTGATCCGTGCTACA 60.564 44.000 0.00 0.00 0.00 2.74
5611 6562 2.380084 TTCCTGATCCGTGCTACAAC 57.620 50.000 0.00 0.00 0.00 3.32
5612 6563 1.557099 TCCTGATCCGTGCTACAACT 58.443 50.000 0.00 0.00 0.00 3.16
5615 6566 2.353704 CCTGATCCGTGCTACAACTTCA 60.354 50.000 0.00 0.00 0.00 3.02
5616 6567 3.525537 CTGATCCGTGCTACAACTTCAT 58.474 45.455 0.00 0.00 0.00 2.57
5617 6568 4.441495 CCTGATCCGTGCTACAACTTCATA 60.441 45.833 0.00 0.00 0.00 2.15
5618 6569 5.276461 TGATCCGTGCTACAACTTCATAT 57.724 39.130 0.00 0.00 0.00 1.78
5619 6570 6.399639 TGATCCGTGCTACAACTTCATATA 57.600 37.500 0.00 0.00 0.00 0.86
5620 6571 6.213677 TGATCCGTGCTACAACTTCATATAC 58.786 40.000 0.00 0.00 0.00 1.47
5621 6572 4.940463 TCCGTGCTACAACTTCATATACC 58.060 43.478 0.00 0.00 0.00 2.73
5627 6578 7.498443 GTGCTACAACTTCATATACCTACCTT 58.502 38.462 0.00 0.00 0.00 3.50
5648 6599 7.234355 ACCTTTCAGGATACATCTTTTCAAGT 58.766 34.615 0.00 0.00 37.67 3.16
5649 6600 7.175641 ACCTTTCAGGATACATCTTTTCAAGTG 59.824 37.037 0.00 0.00 37.67 3.16
5715 6667 8.976986 AAATCATCAAAAGATTACTGACAAGC 57.023 30.769 0.00 0.00 34.78 4.01
5796 6748 7.914465 TGTGCATGGAAAAATTGTTACTTTTC 58.086 30.769 0.00 0.00 39.67 2.29
5802 6754 7.992008 TGGAAAAATTGTTACTTTTCGTCTCT 58.008 30.769 0.00 0.00 40.76 3.10
5849 6801 1.131126 CAACGAGAGAAAATGCGCCAT 59.869 47.619 4.18 0.00 0.00 4.40
5854 6806 3.369385 GAGAGAAAATGCGCCATTGATG 58.631 45.455 4.18 0.00 34.04 3.07
5857 6809 2.100252 AGAAAATGCGCCATTGATGAGG 59.900 45.455 4.18 0.00 34.04 3.86
5902 6854 2.287788 GCACACCAACAACCAAGATGAG 60.288 50.000 0.00 0.00 0.00 2.90
5929 6882 6.535963 AACATGTCATACAGTGATCTCTCA 57.464 37.500 0.00 0.00 39.48 3.27
5944 6898 8.427276 AGTGATCTCTCAAGCAATAATGTCATA 58.573 33.333 0.00 0.00 31.85 2.15
5948 6902 6.481313 TCTCTCAAGCAATAATGTCATACAGC 59.519 38.462 0.00 0.00 0.00 4.40
5949 6903 6.114767 TCTCAAGCAATAATGTCATACAGCA 58.885 36.000 0.00 0.00 0.00 4.41
6010 6964 3.456644 TCCCCTTCTTTGTGTGACTGTTA 59.543 43.478 0.00 0.00 0.00 2.41
6023 6978 4.072131 GTGACTGTTATTGAGCCAAGGAA 58.928 43.478 0.00 0.00 0.00 3.36
6050 7005 2.631062 TGAAGTCAGTTACACCGATGGT 59.369 45.455 0.00 0.00 35.62 3.55
6111 7079 5.464168 CAAAAATCTGATTGAGTGGGTCAC 58.536 41.667 3.22 0.00 33.71 3.67
6136 7104 9.801873 ACTAATGTCAAAATGTTATGTAATGGC 57.198 29.630 0.00 0.00 0.00 4.40
6138 7106 8.477984 AATGTCAAAATGTTATGTAATGGCAC 57.522 30.769 0.00 0.00 0.00 5.01
6139 7107 6.393990 TGTCAAAATGTTATGTAATGGCACC 58.606 36.000 0.00 0.00 0.00 5.01
6148 7116 1.279558 TGTAATGGCACCGAGGCTAAA 59.720 47.619 0.00 0.00 44.55 1.85
6152 7120 3.508845 ATGGCACCGAGGCTAAAATAT 57.491 42.857 0.00 0.00 44.55 1.28
6160 7128 6.691388 GCACCGAGGCTAAAATATTAACTTTG 59.309 38.462 0.00 0.00 0.00 2.77
6206 7200 6.347725 GCTAATTATGCAGGTATCCGAGTTTG 60.348 42.308 0.00 0.00 0.00 2.93
6312 7306 5.669477 TGCAAAATCTTACCCAAATATGCC 58.331 37.500 0.00 0.00 0.00 4.40
6318 7312 9.487442 AAAATCTTACCCAAATATGCCTTTCTA 57.513 29.630 0.00 0.00 0.00 2.10
6320 7314 9.660544 AATCTTACCCAAATATGCCTTTCTAAT 57.339 29.630 0.00 0.00 0.00 1.73
6321 7315 9.660544 ATCTTACCCAAATATGCCTTTCTAATT 57.339 29.630 0.00 0.00 0.00 1.40
6398 7392 6.449956 ACCTCCTTTCCACCATATACTCTTA 58.550 40.000 0.00 0.00 0.00 2.10
6403 7397 7.789831 TCCTTTCCACCATATACTCTTAGATGT 59.210 37.037 0.00 0.00 0.00 3.06
6404 7398 8.432805 CCTTTCCACCATATACTCTTAGATGTT 58.567 37.037 0.00 0.00 0.00 2.71
6452 7460 1.023513 GGCACAAGAAGCGATGCTCT 61.024 55.000 0.00 0.00 38.25 4.09
6493 7501 0.185901 AAATCACCACCAGGCTGTGT 59.814 50.000 14.43 8.26 39.06 3.72
6556 7564 8.240267 ACCTAGTAGTTCATCTAGAAATGTCC 57.760 38.462 0.00 0.00 38.13 4.02
6565 7573 3.170717 TCTAGAAATGTCCGGACCACTT 58.829 45.455 31.19 20.50 0.00 3.16
6637 7645 6.507023 ACTTATTGTTTTTGACAGCTTCAGG 58.493 36.000 0.00 0.00 39.94 3.86
6670 7678 2.262471 GATGAACGCAAGGCTGCCAG 62.262 60.000 22.65 14.02 46.56 4.85
6731 7739 2.871096 AGTCGGGGACAAGCAATAAA 57.129 45.000 0.00 0.00 34.60 1.40
6737 7745 3.181497 CGGGGACAAGCAATAAACATGAG 60.181 47.826 0.00 0.00 0.00 2.90
6750 7758 2.730934 ACATGAGCTGGAAGATGCAT 57.269 45.000 0.00 0.00 34.07 3.96
6763 7771 1.838715 AGATGCATCAGCTGAGTTCCT 59.161 47.619 27.81 11.86 42.74 3.36
6797 7805 5.182950 TGATGACGCAATTAACAAATCAGGT 59.817 36.000 0.00 0.00 0.00 4.00
6811 7819 0.178891 TCAGGTCTGGGCTCCTCTTT 60.179 55.000 0.00 0.00 30.91 2.52
6812 7820 0.035630 CAGGTCTGGGCTCCTCTTTG 60.036 60.000 0.00 0.00 30.91 2.77
6872 7880 0.749818 TTCGCTTTGGCAACCTGACA 60.750 50.000 0.00 0.00 38.60 3.58
6873 7881 0.749818 TCGCTTTGGCAACCTGACAA 60.750 50.000 0.00 0.00 45.00 3.18
6877 7885 2.893441 TTGGCAACCTGACAAGCAA 58.107 47.368 0.00 0.00 41.15 3.91
6962 7970 6.101997 CAGCAGACAAAAGAAAAGGAAAACT 58.898 36.000 0.00 0.00 0.00 2.66
6975 7983 5.514500 AAGGAAAACTAGCAAGTGGGATA 57.486 39.130 0.00 0.00 35.62 2.59
6986 7994 4.221703 AGCAAGTGGGATAGATCCTATTCG 59.778 45.833 8.45 0.00 46.35 3.34
6995 8003 9.937876 TGGGATAGATCCTATTCGATAATAGTT 57.062 33.333 8.45 0.00 46.35 2.24
7017 8025 7.974675 AGTTGATCGGTTGAATTATTACTGTG 58.025 34.615 0.00 0.00 0.00 3.66
7019 8027 7.915293 TGATCGGTTGAATTATTACTGTGTT 57.085 32.000 0.00 0.00 0.00 3.32
7028 8036 9.986833 TTGAATTATTACTGTGTTGATGATTCG 57.013 29.630 0.00 0.00 31.13 3.34
7122 8130 3.820467 TCAGGCAACAGAATCAAACGATT 59.180 39.130 0.00 0.00 41.41 3.34
7144 8152 5.766150 TGTAGAAAGGATGTGTGTTTTGG 57.234 39.130 0.00 0.00 0.00 3.28
7198 8206 0.819259 TCTGAAAGTGCGCCTGCTTT 60.819 50.000 17.51 17.51 43.34 3.51
7205 8213 0.249031 GTGCGCCTGCTTTTCAAGTT 60.249 50.000 4.18 0.00 43.34 2.66
7213 8221 4.677779 GCCTGCTTTTCAAGTTGAAGAACA 60.678 41.667 17.36 13.71 37.70 3.18
7220 8228 6.971527 TTTCAAGTTGAAGAACAGTCGTTA 57.028 33.333 17.36 0.00 37.70 3.18
7232 8240 4.640789 ACAGTCGTTACCAGATCATCTC 57.359 45.455 0.00 0.00 0.00 2.75
7257 8272 1.630369 TGTAGCTGCTCCAGGTCAAAT 59.370 47.619 4.91 0.00 41.50 2.32
7261 8276 2.573462 AGCTGCTCCAGGTCAAATAGAA 59.427 45.455 0.00 0.00 37.71 2.10
7317 8332 2.009774 GGACATTTCAGATGGGTGACG 58.990 52.381 0.00 0.00 0.00 4.35
7597 8614 4.499183 GTCTGTATGCTGTAGCTCACTTT 58.501 43.478 5.38 0.00 42.66 2.66
7598 8615 4.328440 GTCTGTATGCTGTAGCTCACTTTG 59.672 45.833 5.38 0.05 42.66 2.77
7613 8630 2.350498 CACTTTGGGCTACCGTATTTCG 59.650 50.000 0.00 0.00 40.75 3.46
7686 8703 2.136863 TGGTTTCCCCCTCTTTGTGTA 58.863 47.619 0.00 0.00 0.00 2.90
7706 8723 9.990360 TTGTGTATTTTTACTGTAGATGTGAGA 57.010 29.630 0.00 0.00 0.00 3.27
7707 8724 9.990360 TGTGTATTTTTACTGTAGATGTGAGAA 57.010 29.630 0.00 0.00 0.00 2.87
8113 9136 6.215845 TGCTTGCATCTTTAGTTTCTTTTCC 58.784 36.000 0.00 0.00 0.00 3.13
8189 9212 8.667592 ATGTAGTTTCCCTAGATTATACTCCC 57.332 38.462 0.00 0.00 0.00 4.30
8190 9213 7.834046 TGTAGTTTCCCTAGATTATACTCCCT 58.166 38.462 0.00 0.00 0.00 4.20
8191 9214 7.949006 TGTAGTTTCCCTAGATTATACTCCCTC 59.051 40.741 0.00 0.00 0.00 4.30
8192 9215 6.324544 AGTTTCCCTAGATTATACTCCCTCC 58.675 44.000 0.00 0.00 0.00 4.30
8193 9216 4.587976 TCCCTAGATTATACTCCCTCCG 57.412 50.000 0.00 0.00 0.00 4.63
8194 9217 3.921486 TCCCTAGATTATACTCCCTCCGT 59.079 47.826 0.00 0.00 0.00 4.69
8195 9218 4.018597 TCCCTAGATTATACTCCCTCCGTC 60.019 50.000 0.00 0.00 0.00 4.79
8196 9219 4.271661 CCTAGATTATACTCCCTCCGTCC 58.728 52.174 0.00 0.00 0.00 4.79
8197 9220 3.172471 AGATTATACTCCCTCCGTCCC 57.828 52.381 0.00 0.00 0.00 4.46
8198 9221 2.449730 AGATTATACTCCCTCCGTCCCA 59.550 50.000 0.00 0.00 0.00 4.37
8199 9222 3.077695 AGATTATACTCCCTCCGTCCCAT 59.922 47.826 0.00 0.00 0.00 4.00
8200 9223 4.294168 AGATTATACTCCCTCCGTCCCATA 59.706 45.833 0.00 0.00 0.00 2.74
8201 9224 4.474303 TTATACTCCCTCCGTCCCATAA 57.526 45.455 0.00 0.00 0.00 1.90
8202 9225 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
8203 9226 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
8204 9227 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
8205 9228 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
8206 9229 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
8207 9230 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
8208 9231 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
8209 9232 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
8210 9233 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
8211 9234 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
8212 9235 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
8213 9236 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
8214 9237 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
8215 9238 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
8216 9239 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
8217 9240 7.385752 CCGTCCCATAATATAAGAGCGTTTTTA 59.614 37.037 0.00 0.00 0.00 1.52
8218 9241 8.219105 CGTCCCATAATATAAGAGCGTTTTTAC 58.781 37.037 0.00 0.00 0.00 2.01
8219 9242 9.048446 GTCCCATAATATAAGAGCGTTTTTACA 57.952 33.333 0.00 0.00 0.00 2.41
8220 9243 9.048446 TCCCATAATATAAGAGCGTTTTTACAC 57.952 33.333 0.00 0.00 0.00 2.90
8221 9244 9.052759 CCCATAATATAAGAGCGTTTTTACACT 57.947 33.333 0.00 0.00 0.00 3.55
8241 9264 4.212213 CTAGTATAGTGTCGAAAGCGCT 57.788 45.455 2.64 2.64 33.57 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.490490 GATCCCCATGCTAGTCCAACA 59.510 52.381 0.00 0.00 0.00 3.33
13 14 1.528542 CGAGCGGAGTAGATCCCCA 60.529 63.158 0.00 0.00 46.50 4.96
79 80 3.474600 CAGGATCTCCAAATGATTCGCT 58.525 45.455 0.00 0.00 38.89 4.93
88 89 2.272146 GCGCCCAGGATCTCCAAA 59.728 61.111 0.00 0.00 38.89 3.28
123 124 0.742281 GCAGAGCGAGCCAGATGAAA 60.742 55.000 0.00 0.00 0.00 2.69
201 202 3.869912 GCTCTTGGTCACATAGAAGGCAA 60.870 47.826 0.00 0.00 0.00 4.52
213 214 0.039180 TAGTCTCGGGCTCTTGGTCA 59.961 55.000 0.00 0.00 0.00 4.02
298 307 2.528743 GGATCGTGGCAGTGCATCG 61.529 63.158 18.61 19.43 0.00 3.84
299 308 2.182842 GGGATCGTGGCAGTGCATC 61.183 63.158 18.61 10.87 0.00 3.91
300 309 2.124570 GGGATCGTGGCAGTGCAT 60.125 61.111 18.61 0.64 0.00 3.96
301 310 4.408821 GGGGATCGTGGCAGTGCA 62.409 66.667 18.61 0.00 0.00 4.57
322 331 1.404391 GGCGATGAACTCCTCGTCTTA 59.596 52.381 6.32 0.00 37.86 2.10
408 417 2.151202 CACAAATGTCGGGCAGTAAGT 58.849 47.619 0.00 0.00 0.00 2.24
411 420 0.687920 TCCACAAATGTCGGGCAGTA 59.312 50.000 0.00 0.00 0.00 2.74
414 423 0.671251 GTTTCCACAAATGTCGGGCA 59.329 50.000 0.00 0.00 0.00 5.36
418 427 4.221926 TGTGATGTTTCCACAAATGTCG 57.778 40.909 0.00 0.00 41.07 4.35
426 435 4.037923 AGACAACCATTGTGATGTTTCCAC 59.962 41.667 0.00 0.00 45.52 4.02
481 492 0.324614 TCTTGGATCATGTGCACCGT 59.675 50.000 15.69 0.00 0.00 4.83
637 1448 8.371571 TGCATTGATAGATAGGATGACAGTAT 57.628 34.615 0.00 0.00 0.00 2.12
643 1454 9.881649 GTATCTTTGCATTGATAGATAGGATGA 57.118 33.333 8.77 0.00 32.04 2.92
646 1457 7.896811 ACGTATCTTTGCATTGATAGATAGGA 58.103 34.615 18.84 0.00 37.53 2.94
671 1482 5.637006 ACCACGAATATGCAAAAGCTTTA 57.363 34.783 13.10 0.00 0.00 1.85
700 1511 7.378181 ACTGTATTGGGTTAAAAGAAAGCATG 58.622 34.615 0.00 0.00 0.00 4.06
724 1535 3.391049 GGGGCGAGTTAGTATCAATGAC 58.609 50.000 0.00 0.00 0.00 3.06
728 1539 2.170012 AGGGGGCGAGTTAGTATCAA 57.830 50.000 0.00 0.00 0.00 2.57
736 1547 0.039035 TTGCAAATAGGGGGCGAGTT 59.961 50.000 0.00 0.00 0.00 3.01
741 1552 0.172578 GACGTTTGCAAATAGGGGGC 59.827 55.000 16.21 1.37 0.00 5.80
742 1553 1.472480 CTGACGTTTGCAAATAGGGGG 59.528 52.381 16.21 3.79 0.00 5.40
794 1632 1.068741 AGAGTCAACTCCACCGAACAC 59.931 52.381 6.54 0.00 43.88 3.32
970 1808 2.657066 GGGGAACGTCAGGAGGGTC 61.657 68.421 0.00 0.00 32.53 4.46
1151 1991 1.967066 AGATGGCACCCGAGAAGATAG 59.033 52.381 0.00 0.00 0.00 2.08
1153 1993 1.967066 CTAGATGGCACCCGAGAAGAT 59.033 52.381 0.00 0.00 0.00 2.40
1155 1995 0.390860 CCTAGATGGCACCCGAGAAG 59.609 60.000 0.00 0.00 0.00 2.85
1429 2270 5.779241 TGTGAAAGTTTCCCCTGATAGAT 57.221 39.130 13.01 0.00 0.00 1.98
1537 2378 5.121611 TGAACAACGGATAGCATTAGTGTTG 59.878 40.000 0.00 0.00 40.61 3.33
1569 2411 2.952310 GTTCTGGCTGGAACTTTTGACT 59.048 45.455 13.66 0.00 41.44 3.41
1594 2436 5.665812 AGTTTATAGGGTTATCTGAGCCACA 59.334 40.000 0.00 0.00 39.66 4.17
1608 2450 0.657840 GCACGCAGCAGTTTATAGGG 59.342 55.000 0.00 0.00 44.79 3.53
1623 2465 2.021793 CCAACATCGATGCGCACG 59.978 61.111 25.11 19.03 0.00 5.34
1715 2557 4.243270 ACACTTACTACCGAAATCACAGC 58.757 43.478 0.00 0.00 0.00 4.40
1748 2590 4.037923 TGTTTCATCCTGCTTTGTTCTTCC 59.962 41.667 0.00 0.00 0.00 3.46
1832 2674 3.342719 TCGAGATGGCAAGTGCATAAAA 58.657 40.909 5.52 0.00 44.36 1.52
1898 2740 5.473162 CCAATGGTTCACAACTTCACATCTA 59.527 40.000 0.00 0.00 0.00 1.98
1998 2841 0.318529 CCATCGCTCTGGTCATCGAG 60.319 60.000 0.00 0.00 34.30 4.04
2002 2845 0.107993 CACACCATCGCTCTGGTCAT 60.108 55.000 4.21 0.00 46.79 3.06
2018 2861 1.202758 AGGATCTCAACCAAACGCACA 60.203 47.619 0.00 0.00 0.00 4.57
2038 2881 3.799281 GCTGGTGCAAGCCAAATAATA 57.201 42.857 0.00 0.00 38.18 0.98
2061 2904 1.497309 ATGAAAGGGAAGGGCGGACA 61.497 55.000 0.00 0.00 0.00 4.02
2115 2958 3.462021 CAAAATTTTGGCGGAGGAAACA 58.538 40.909 21.00 0.00 34.59 2.83
2162 3006 1.643880 GCCATTTGTATTGTGCCTGC 58.356 50.000 0.00 0.00 0.00 4.85
2367 3223 2.223144 CACTGTACCCAATCACACAACG 59.777 50.000 0.00 0.00 0.00 4.10
2368 3224 2.552315 CCACTGTACCCAATCACACAAC 59.448 50.000 0.00 0.00 0.00 3.32
2369 3225 2.857483 CCACTGTACCCAATCACACAA 58.143 47.619 0.00 0.00 0.00 3.33
2370 3226 1.544537 GCCACTGTACCCAATCACACA 60.545 52.381 0.00 0.00 0.00 3.72
2371 3227 1.165270 GCCACTGTACCCAATCACAC 58.835 55.000 0.00 0.00 0.00 3.82
2372 3228 0.767998 TGCCACTGTACCCAATCACA 59.232 50.000 0.00 0.00 0.00 3.58
2373 3229 1.904287 TTGCCACTGTACCCAATCAC 58.096 50.000 0.00 0.00 0.00 3.06
2374 3230 2.897271 ATTGCCACTGTACCCAATCA 57.103 45.000 0.00 0.00 0.00 2.57
2375 3231 4.244862 CAAAATTGCCACTGTACCCAATC 58.755 43.478 0.00 0.00 0.00 2.67
2376 3232 4.270245 CAAAATTGCCACTGTACCCAAT 57.730 40.909 0.00 0.00 0.00 3.16
2377 3233 3.742433 CAAAATTGCCACTGTACCCAA 57.258 42.857 0.00 0.00 0.00 4.12
2446 3302 8.912988 TGGTAGCCTTTTAGATTTATGGATTTG 58.087 33.333 0.00 0.00 0.00 2.32
2454 3310 7.400915 TGGTAGACTGGTAGCCTTTTAGATTTA 59.599 37.037 0.00 0.00 0.00 1.40
2457 3313 5.128991 GTGGTAGACTGGTAGCCTTTTAGAT 59.871 44.000 0.00 0.00 0.00 1.98
2463 3319 1.183549 CGTGGTAGACTGGTAGCCTT 58.816 55.000 0.00 0.00 0.00 4.35
2464 3320 0.330604 TCGTGGTAGACTGGTAGCCT 59.669 55.000 0.00 0.00 0.00 4.58
2465 3321 1.180029 TTCGTGGTAGACTGGTAGCC 58.820 55.000 0.00 0.00 0.00 3.93
2466 3322 2.490903 TCTTTCGTGGTAGACTGGTAGC 59.509 50.000 0.00 0.00 0.00 3.58
2467 3323 4.734917 CTTCTTTCGTGGTAGACTGGTAG 58.265 47.826 0.00 0.00 0.00 3.18
2468 3324 3.057033 GCTTCTTTCGTGGTAGACTGGTA 60.057 47.826 0.00 0.00 0.00 3.25
2469 3325 2.288886 GCTTCTTTCGTGGTAGACTGGT 60.289 50.000 0.00 0.00 0.00 4.00
2470 3326 2.338500 GCTTCTTTCGTGGTAGACTGG 58.662 52.381 0.00 0.00 0.00 4.00
2471 3327 2.028930 AGGCTTCTTTCGTGGTAGACTG 60.029 50.000 0.00 0.00 0.00 3.51
2474 3330 2.244695 TGAGGCTTCTTTCGTGGTAGA 58.755 47.619 0.00 0.00 0.00 2.59
2512 3368 5.039984 CAGTATGGAGAAATGAGACGACTG 58.960 45.833 0.00 0.00 0.00 3.51
2546 3402 9.742144 GGAGAGGTAGACATATCTATTCTGTAA 57.258 37.037 3.54 0.00 39.66 2.41
2547 3403 9.118367 AGGAGAGGTAGACATATCTATTCTGTA 57.882 37.037 3.54 0.00 39.66 2.74
2549 3405 9.967451 TTAGGAGAGGTAGACATATCTATTCTG 57.033 37.037 3.54 0.00 39.66 3.02
2609 3469 9.331282 GCCCATATCACATAAATATTCTAGACC 57.669 37.037 0.00 0.00 0.00 3.85
2708 3568 5.049828 TGGATGCATTATACACTTCACTCG 58.950 41.667 0.00 0.00 0.00 4.18
2738 3598 2.030274 TCTCATCGCTTTTCACGACTGA 60.030 45.455 0.00 0.00 43.23 3.41
2744 3604 4.618489 CCACAATTTCTCATCGCTTTTCAC 59.382 41.667 0.00 0.00 0.00 3.18
2752 3612 4.764679 TTGGTTCCACAATTTCTCATCG 57.235 40.909 0.00 0.00 0.00 3.84
2755 3615 3.243367 CGCTTTGGTTCCACAATTTCTCA 60.243 43.478 0.00 0.00 0.00 3.27
2793 3656 6.468956 CACGGTATACAATTCATCTTTGCAAC 59.531 38.462 0.00 0.00 0.00 4.17
2830 3716 3.404438 GGCCGGGATACACCACCA 61.404 66.667 2.18 0.00 41.20 4.17
2859 3745 2.754946 TAATCGTGTCCACAGGGTTC 57.245 50.000 1.26 0.00 36.58 3.62
2882 3768 1.525077 GCAACACCTGAACCCACGA 60.525 57.895 0.00 0.00 0.00 4.35
2904 3790 5.621329 CGGCTTTTTAATTAAGGAGGTGTGG 60.621 44.000 0.00 0.00 0.00 4.17
3073 3965 5.473504 TGGTTGGACTTCAGAAAGCTATTTC 59.526 40.000 0.00 0.00 44.37 2.17
3158 4050 5.410132 TGATACGGTAATGTGAACCAACAAG 59.590 40.000 0.00 0.00 36.78 3.16
3161 4053 4.093850 GGTGATACGGTAATGTGAACCAAC 59.906 45.833 0.00 0.00 36.78 3.77
3164 4056 3.864243 TGGTGATACGGTAATGTGAACC 58.136 45.455 0.00 0.00 0.00 3.62
3169 4061 6.285990 GGTTATTCTGGTGATACGGTAATGT 58.714 40.000 0.00 0.00 0.00 2.71
3171 4063 5.069516 ACGGTTATTCTGGTGATACGGTAAT 59.930 40.000 0.00 0.00 0.00 1.89
3176 4068 4.303086 AGACGGTTATTCTGGTGATACG 57.697 45.455 0.00 0.00 0.00 3.06
3193 4085 8.499162 AGATTAAACATGAGAAGTTTCAAGACG 58.501 33.333 0.00 0.00 39.65 4.18
3265 4161 4.634012 AAGAAGTACAATACAGCCACCA 57.366 40.909 0.00 0.00 0.00 4.17
3305 4201 4.574599 TCAGATCGGAGTATGTGTGATG 57.425 45.455 0.00 0.00 0.00 3.07
3306 4202 4.889995 TCTTCAGATCGGAGTATGTGTGAT 59.110 41.667 0.00 0.00 0.00 3.06
3453 4349 7.323049 TCACGGTTTGAAATTAACAAGAAGA 57.677 32.000 0.00 0.00 0.00 2.87
3473 4369 2.083774 ACCATGGTTACTGCAATCACG 58.916 47.619 13.00 0.00 27.35 4.35
3536 4432 9.685276 AATTCAACTTACATGATGATCTGGTAA 57.315 29.630 0.00 8.45 0.00 2.85
3579 4475 7.266922 AGGAATCTCTTAAGTACAGATCGAC 57.733 40.000 1.63 0.00 0.00 4.20
3613 4509 5.670485 ACAGGACGCTGAATATAATTGACA 58.330 37.500 0.00 0.00 0.00 3.58
3635 4531 8.446599 AGTATAATTATGTTGTAGCCACCAAC 57.553 34.615 8.28 4.31 41.97 3.77
3725 4630 9.129209 GGTTAGCTGTCAATCTCAAAATTTAAC 57.871 33.333 0.00 0.00 0.00 2.01
3752 4657 1.610038 CAGCCATCACACTGCAAAAGA 59.390 47.619 0.00 0.00 0.00 2.52
3823 4728 4.574674 TTAGCACCCATTCTCTCAATGT 57.425 40.909 0.00 0.00 0.00 2.71
3851 4756 1.670811 CGACAAGCTAAATTCGGGCAT 59.329 47.619 0.00 0.00 0.00 4.40
3857 4762 1.810151 TGCCACCGACAAGCTAAATTC 59.190 47.619 0.00 0.00 0.00 2.17
3862 4767 0.464036 CCTATGCCACCGACAAGCTA 59.536 55.000 0.00 0.00 0.00 3.32
3871 4776 5.665459 CATAGAGCTAATACCTATGCCACC 58.335 45.833 6.47 0.00 35.10 4.61
3909 4814 5.997129 ACCAAAAAGGCAAATACCAAATCAG 59.003 36.000 0.00 0.00 43.14 2.90
4007 4912 1.138069 TGACAGTTGTTGAGAAGCCGA 59.862 47.619 0.00 0.00 0.00 5.54
4120 5025 7.830940 ATATATTTGTTGTTGTGGCAATGTG 57.169 32.000 0.00 0.00 0.00 3.21
4146 5051 6.410914 CACATTTCGTCGCTATTTTTCATACC 59.589 38.462 0.00 0.00 0.00 2.73
4157 5062 5.463286 TCTTTAAGACACATTTCGTCGCTA 58.537 37.500 0.00 0.00 38.46 4.26
4158 5063 4.304110 TCTTTAAGACACATTTCGTCGCT 58.696 39.130 0.00 0.00 38.46 4.93
4159 5064 4.640805 TCTTTAAGACACATTTCGTCGC 57.359 40.909 0.00 0.00 38.46 5.19
4160 5065 6.448053 TCTTCTTTAAGACACATTTCGTCG 57.552 37.500 0.00 0.00 36.80 5.12
4217 5136 9.650539 CTCCATCACATAAACAGGAAGATATAG 57.349 37.037 0.00 0.00 0.00 1.31
4227 5146 4.872691 GTGACTCCTCCATCACATAAACAG 59.127 45.833 0.00 0.00 43.89 3.16
4309 5234 6.024552 TGTGACCTTTTGGATTGCTATTTC 57.975 37.500 0.00 0.00 44.07 2.17
4331 5257 9.793252 AGCTTAATTACTTGAATTACTTGCATG 57.207 29.630 0.00 0.00 39.28 4.06
4388 5314 5.794894 GGGAAACCGTATCATGATAGTGAT 58.205 41.667 15.83 4.87 43.64 3.06
4415 5341 2.099592 AGATGTGCACAACAACAACCAG 59.900 45.455 25.72 0.00 43.61 4.00
4432 5358 7.781548 TCAATGAGTTGTGATGTCATAGATG 57.218 36.000 0.00 0.00 36.69 2.90
4433 5359 8.975663 AATCAATGAGTTGTGATGTCATAGAT 57.024 30.769 0.00 0.00 34.70 1.98
4569 5497 9.161629 TCGAAAGATTTCAGACAATTAAGCATA 57.838 29.630 6.16 0.00 37.01 3.14
4642 5570 1.883275 CGCCTACACCTATCAGGAGAG 59.117 57.143 0.00 0.00 37.67 3.20
4643 5571 1.478837 CCGCCTACACCTATCAGGAGA 60.479 57.143 0.00 0.00 37.67 3.71
4644 5572 0.962489 CCGCCTACACCTATCAGGAG 59.038 60.000 0.00 0.00 37.67 3.69
4713 5661 0.608130 TGCATTCTACGTGCAGTCCT 59.392 50.000 0.00 0.00 46.76 3.85
4722 5670 2.159787 GCTCTGTGTGTTGCATTCTACG 60.160 50.000 0.00 0.00 0.00 3.51
4795 5743 9.899661 TGCTACACTAGGTAATGACAATTATTT 57.100 29.630 0.00 0.00 31.03 1.40
4805 5753 8.668510 ATTCTTTCATGCTACACTAGGTAATG 57.331 34.615 0.00 0.00 0.00 1.90
4879 5828 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
4880 5829 8.547481 CCCTTTGGGTCTTTTTATATTGGTAT 57.453 34.615 0.00 0.00 38.25 2.73
4881 5830 7.964666 CCCTTTGGGTCTTTTTATATTGGTA 57.035 36.000 0.00 0.00 38.25 3.25
4882 5831 6.867519 CCCTTTGGGTCTTTTTATATTGGT 57.132 37.500 0.00 0.00 38.25 3.67
4898 5847 0.031817 ATTGGATCTGCCCCCTTTGG 60.032 55.000 0.00 0.00 34.97 3.28
4899 5848 1.870064 AATTGGATCTGCCCCCTTTG 58.130 50.000 0.00 0.00 34.97 2.77
4900 5849 3.774842 TTAATTGGATCTGCCCCCTTT 57.225 42.857 0.00 0.00 34.97 3.11
4901 5850 3.468625 AGATTAATTGGATCTGCCCCCTT 59.531 43.478 5.62 0.00 32.79 3.95
4902 5851 3.066704 AGATTAATTGGATCTGCCCCCT 58.933 45.455 5.62 0.00 32.79 4.79
4903 5852 3.425659 GAGATTAATTGGATCTGCCCCC 58.574 50.000 9.96 0.00 34.13 5.40
4904 5853 3.077359 CGAGATTAATTGGATCTGCCCC 58.923 50.000 9.96 0.00 34.13 5.80
4905 5854 3.077359 CCGAGATTAATTGGATCTGCCC 58.923 50.000 9.96 0.00 34.13 5.36
4906 5855 2.485814 GCCGAGATTAATTGGATCTGCC 59.514 50.000 9.96 0.00 34.13 4.85
4907 5856 2.485814 GGCCGAGATTAATTGGATCTGC 59.514 50.000 9.96 8.37 34.13 4.26
4908 5857 3.743521 TGGCCGAGATTAATTGGATCTG 58.256 45.455 9.96 4.52 34.13 2.90
4909 5858 4.042062 TGATGGCCGAGATTAATTGGATCT 59.958 41.667 0.00 6.01 36.60 2.75
4910 5859 4.326826 TGATGGCCGAGATTAATTGGATC 58.673 43.478 0.00 0.00 0.00 3.36
4911 5860 4.371624 TGATGGCCGAGATTAATTGGAT 57.628 40.909 0.00 0.00 0.00 3.41
4912 5861 3.855255 TGATGGCCGAGATTAATTGGA 57.145 42.857 0.00 0.00 0.00 3.53
4913 5862 4.916983 TTTGATGGCCGAGATTAATTGG 57.083 40.909 0.00 0.00 0.00 3.16
4914 5863 5.649557 TGTTTTGATGGCCGAGATTAATTG 58.350 37.500 0.00 0.00 0.00 2.32
4915 5864 5.913137 TGTTTTGATGGCCGAGATTAATT 57.087 34.783 0.00 0.00 0.00 1.40
4916 5865 5.360714 ACATGTTTTGATGGCCGAGATTAAT 59.639 36.000 0.00 0.00 0.00 1.40
4917 5866 4.704540 ACATGTTTTGATGGCCGAGATTAA 59.295 37.500 0.00 0.00 0.00 1.40
4918 5867 4.269183 ACATGTTTTGATGGCCGAGATTA 58.731 39.130 0.00 0.00 0.00 1.75
4919 5868 3.091545 ACATGTTTTGATGGCCGAGATT 58.908 40.909 0.00 0.00 0.00 2.40
4920 5869 2.684881 GACATGTTTTGATGGCCGAGAT 59.315 45.455 0.00 0.00 0.00 2.75
4921 5870 2.083774 GACATGTTTTGATGGCCGAGA 58.916 47.619 0.00 0.00 0.00 4.04
4922 5871 1.811965 TGACATGTTTTGATGGCCGAG 59.188 47.619 0.00 0.00 29.16 4.63
4923 5872 1.902938 TGACATGTTTTGATGGCCGA 58.097 45.000 0.00 0.00 29.16 5.54
4924 5873 2.721274 TTGACATGTTTTGATGGCCG 57.279 45.000 0.00 0.00 29.16 6.13
4925 5874 3.524541 GGATTGACATGTTTTGATGGCC 58.475 45.455 0.00 0.00 29.16 5.36
4926 5875 3.119531 TCGGATTGACATGTTTTGATGGC 60.120 43.478 0.00 0.00 0.00 4.40
4927 5876 4.700268 TCGGATTGACATGTTTTGATGG 57.300 40.909 0.00 0.00 0.00 3.51
4939 5888 3.372954 CAATCTAGGTCGTCGGATTGAC 58.627 50.000 12.92 5.15 44.27 3.18
4940 5889 2.223735 GCAATCTAGGTCGTCGGATTGA 60.224 50.000 19.11 3.20 44.27 2.57
4941 5890 2.128035 GCAATCTAGGTCGTCGGATTG 58.872 52.381 13.56 13.56 44.31 2.67
4942 5891 2.032620 AGCAATCTAGGTCGTCGGATT 58.967 47.619 0.00 0.00 0.00 3.01
4943 5892 1.693627 AGCAATCTAGGTCGTCGGAT 58.306 50.000 0.00 0.00 0.00 4.18
4944 5893 1.404391 GAAGCAATCTAGGTCGTCGGA 59.596 52.381 0.00 0.00 0.00 4.55
4945 5894 1.405821 AGAAGCAATCTAGGTCGTCGG 59.594 52.381 0.00 0.00 36.32 4.79
4946 5895 2.455032 CAGAAGCAATCTAGGTCGTCG 58.545 52.381 0.00 0.00 36.32 5.12
4947 5896 2.166664 ACCAGAAGCAATCTAGGTCGTC 59.833 50.000 0.00 0.00 35.79 4.20
4948 5897 2.093973 CACCAGAAGCAATCTAGGTCGT 60.094 50.000 9.24 0.00 37.42 4.34
4949 5898 2.166459 TCACCAGAAGCAATCTAGGTCG 59.834 50.000 9.24 7.09 37.42 4.79
4950 5899 3.791245 CTCACCAGAAGCAATCTAGGTC 58.209 50.000 9.24 0.00 37.42 3.85
4951 5900 2.093235 GCTCACCAGAAGCAATCTAGGT 60.093 50.000 0.00 7.41 38.99 3.08
4952 5901 2.559440 GCTCACCAGAAGCAATCTAGG 58.441 52.381 0.00 0.00 36.32 3.02
4953 5902 2.200067 CGCTCACCAGAAGCAATCTAG 58.800 52.381 0.00 0.00 36.32 2.43
4954 5903 1.740380 GCGCTCACCAGAAGCAATCTA 60.740 52.381 0.00 0.00 36.32 1.98
4955 5904 1.023513 GCGCTCACCAGAAGCAATCT 61.024 55.000 0.00 0.00 39.68 2.40
4956 5905 1.023513 AGCGCTCACCAGAAGCAATC 61.024 55.000 2.64 0.00 32.06 2.67
4957 5906 1.002868 AGCGCTCACCAGAAGCAAT 60.003 52.632 2.64 0.00 32.06 3.56
4958 5907 1.962822 CAGCGCTCACCAGAAGCAA 60.963 57.895 7.13 0.00 32.06 3.91
4959 5908 2.357881 CAGCGCTCACCAGAAGCA 60.358 61.111 7.13 0.00 32.06 3.91
4960 5909 1.669115 TTCAGCGCTCACCAGAAGC 60.669 57.895 7.13 0.00 0.00 3.86
4961 5910 0.601046 TGTTCAGCGCTCACCAGAAG 60.601 55.000 7.13 0.00 0.00 2.85
4962 5911 0.035317 ATGTTCAGCGCTCACCAGAA 59.965 50.000 7.13 4.70 0.00 3.02
4963 5912 0.671472 CATGTTCAGCGCTCACCAGA 60.671 55.000 7.13 0.00 0.00 3.86
4964 5913 0.952497 ACATGTTCAGCGCTCACCAG 60.952 55.000 7.13 5.26 0.00 4.00
4965 5914 0.534877 AACATGTTCAGCGCTCACCA 60.535 50.000 7.13 4.08 0.00 4.17
4966 5915 0.593128 AAACATGTTCAGCGCTCACC 59.407 50.000 7.13 0.00 0.00 4.02
4967 5916 2.726066 GCTAAACATGTTCAGCGCTCAC 60.726 50.000 17.79 8.33 0.00 3.51
4968 5917 1.464608 GCTAAACATGTTCAGCGCTCA 59.535 47.619 17.79 2.45 0.00 4.26
4969 5918 2.165282 GCTAAACATGTTCAGCGCTC 57.835 50.000 17.79 0.00 0.00 5.03
4973 5922 1.069296 TGCACGCTAAACATGTTCAGC 60.069 47.619 21.86 21.86 0.00 4.26
4974 5923 2.967459 TGCACGCTAAACATGTTCAG 57.033 45.000 12.39 8.13 0.00 3.02
4975 5924 3.913548 ATTGCACGCTAAACATGTTCA 57.086 38.095 12.39 0.00 0.00 3.18
4976 5925 6.869421 ATTAATTGCACGCTAAACATGTTC 57.131 33.333 12.39 0.00 0.00 3.18
4977 5926 8.187480 TGATATTAATTGCACGCTAAACATGTT 58.813 29.630 4.92 4.92 0.00 2.71
4978 5927 7.702386 TGATATTAATTGCACGCTAAACATGT 58.298 30.769 0.00 0.00 0.00 3.21
4979 5928 8.732413 ATGATATTAATTGCACGCTAAACATG 57.268 30.769 0.00 0.00 0.00 3.21
4980 5929 9.825972 GTATGATATTAATTGCACGCTAAACAT 57.174 29.630 0.00 0.00 0.00 2.71
4981 5930 8.831550 TGTATGATATTAATTGCACGCTAAACA 58.168 29.630 0.00 0.00 0.00 2.83
4982 5931 9.658475 TTGTATGATATTAATTGCACGCTAAAC 57.342 29.630 0.00 0.00 0.00 2.01
5005 5954 9.346005 TGATCTGCTCATATGTTGATAATTTGT 57.654 29.630 1.90 0.00 32.72 2.83
5006 5955 9.608617 GTGATCTGCTCATATGTTGATAATTTG 57.391 33.333 1.90 0.00 35.97 2.32
5007 5956 9.346005 TGTGATCTGCTCATATGTTGATAATTT 57.654 29.630 1.90 0.00 35.97 1.82
5008 5957 8.913487 TGTGATCTGCTCATATGTTGATAATT 57.087 30.769 1.90 0.00 35.97 1.40
5012 5961 9.516546 AATTATGTGATCTGCTCATATGTTGAT 57.483 29.630 1.90 2.94 36.49 2.57
5013 5962 8.913487 AATTATGTGATCTGCTCATATGTTGA 57.087 30.769 1.90 0.00 36.49 3.18
5016 5965 9.783081 TGTTAATTATGTGATCTGCTCATATGT 57.217 29.630 1.90 0.00 36.49 2.29
5018 5967 8.929746 CGTGTTAATTATGTGATCTGCTCATAT 58.070 33.333 0.00 0.00 38.95 1.78
5019 5968 7.926018 ACGTGTTAATTATGTGATCTGCTCATA 59.074 33.333 0.00 0.00 35.97 2.15
5020 5969 6.763135 ACGTGTTAATTATGTGATCTGCTCAT 59.237 34.615 0.00 0.00 35.97 2.90
5021 5970 6.106003 ACGTGTTAATTATGTGATCTGCTCA 58.894 36.000 0.00 0.00 0.00 4.26
5022 5971 6.589830 ACGTGTTAATTATGTGATCTGCTC 57.410 37.500 0.00 0.00 0.00 4.26
5023 5972 8.662781 ATTACGTGTTAATTATGTGATCTGCT 57.337 30.769 0.00 0.00 0.00 4.24
5024 5973 9.158364 CAATTACGTGTTAATTATGTGATCTGC 57.842 33.333 0.00 0.00 38.17 4.26
5035 5984 9.457436 AGGTAGGAAATCAATTACGTGTTAATT 57.543 29.630 0.00 0.00 40.47 1.40
5037 5986 9.941325 TTAGGTAGGAAATCAATTACGTGTTAA 57.059 29.630 0.00 0.00 0.00 2.01
5058 6007 8.965819 TGTGTCAATTGCATGTTTATATTAGGT 58.034 29.630 0.00 0.00 0.00 3.08
5059 6008 9.970395 ATGTGTCAATTGCATGTTTATATTAGG 57.030 29.630 0.00 0.00 0.00 2.69
5065 6014 9.872721 TCAATTATGTGTCAATTGCATGTTTAT 57.127 25.926 0.00 0.00 41.22 1.40
5066 6015 9.872721 ATCAATTATGTGTCAATTGCATGTTTA 57.127 25.926 0.00 0.00 41.22 2.01
5067 6016 8.780846 ATCAATTATGTGTCAATTGCATGTTT 57.219 26.923 0.00 0.00 41.22 2.83
5069 6018 9.687210 GATATCAATTATGTGTCAATTGCATGT 57.313 29.630 0.00 0.00 41.22 3.21
5070 6019 9.135843 GGATATCAATTATGTGTCAATTGCATG 57.864 33.333 4.83 0.00 41.22 4.06
5071 6020 9.085645 AGGATATCAATTATGTGTCAATTGCAT 57.914 29.630 4.83 1.44 41.22 3.96
5072 6021 8.467963 AGGATATCAATTATGTGTCAATTGCA 57.532 30.769 4.83 0.00 41.22 4.08
5073 6022 9.831737 GTAGGATATCAATTATGTGTCAATTGC 57.168 33.333 4.83 0.00 41.22 3.56
5077 6026 9.913310 TTTGGTAGGATATCAATTATGTGTCAA 57.087 29.630 4.83 0.00 42.08 3.18
5109 6058 9.193806 ACATTAGAGAGGAAATTAATTGCATGT 57.806 29.630 8.47 0.00 0.00 3.21
5117 6066 8.662141 GCACGTTAACATTAGAGAGGAAATTAA 58.338 33.333 6.39 0.00 0.00 1.40
5118 6067 7.820386 TGCACGTTAACATTAGAGAGGAAATTA 59.180 33.333 6.39 0.00 0.00 1.40
5119 6068 6.653320 TGCACGTTAACATTAGAGAGGAAATT 59.347 34.615 6.39 0.00 0.00 1.82
5120 6069 6.170506 TGCACGTTAACATTAGAGAGGAAAT 58.829 36.000 6.39 0.00 0.00 2.17
5121 6070 5.543714 TGCACGTTAACATTAGAGAGGAAA 58.456 37.500 6.39 0.00 0.00 3.13
5122 6071 5.142061 TGCACGTTAACATTAGAGAGGAA 57.858 39.130 6.39 0.00 0.00 3.36
5123 6072 4.794278 TGCACGTTAACATTAGAGAGGA 57.206 40.909 6.39 0.00 0.00 3.71
5124 6073 5.727791 GCAATGCACGTTAACATTAGAGAGG 60.728 44.000 6.39 0.00 34.80 3.69
5125 6074 5.163864 TGCAATGCACGTTAACATTAGAGAG 60.164 40.000 2.72 0.00 34.80 3.20
5126 6075 4.693095 TGCAATGCACGTTAACATTAGAGA 59.307 37.500 2.72 0.00 34.80 3.10
5127 6076 4.968626 TGCAATGCACGTTAACATTAGAG 58.031 39.130 2.72 0.00 34.80 2.43
5141 6090 2.161410 GGAAACTCGTATGTGCAATGCA 59.839 45.455 2.72 2.72 35.60 3.96
5142 6091 2.420022 AGGAAACTCGTATGTGCAATGC 59.580 45.455 0.00 0.00 32.90 3.56
5143 6092 4.870426 ACTAGGAAACTCGTATGTGCAATG 59.130 41.667 0.00 0.00 43.67 2.82
5144 6093 5.086104 ACTAGGAAACTCGTATGTGCAAT 57.914 39.130 0.00 0.00 43.67 3.56
5145 6094 4.530710 ACTAGGAAACTCGTATGTGCAA 57.469 40.909 0.00 0.00 43.67 4.08
5146 6095 4.242475 CAACTAGGAAACTCGTATGTGCA 58.758 43.478 0.00 0.00 43.67 4.57
5147 6096 4.243270 ACAACTAGGAAACTCGTATGTGC 58.757 43.478 0.00 0.00 43.67 4.57
5148 6097 5.515626 GCTACAACTAGGAAACTCGTATGTG 59.484 44.000 0.00 0.00 43.67 3.21
5149 6098 5.418209 AGCTACAACTAGGAAACTCGTATGT 59.582 40.000 0.00 0.00 43.67 2.29
5150 6099 5.892568 AGCTACAACTAGGAAACTCGTATG 58.107 41.667 0.00 0.00 43.67 2.39
5151 6100 7.201803 CCTTAGCTACAACTAGGAAACTCGTAT 60.202 40.741 2.67 0.00 43.67 3.06
5152 6101 6.094603 CCTTAGCTACAACTAGGAAACTCGTA 59.905 42.308 2.67 0.00 43.67 3.43
5153 6102 5.105837 CCTTAGCTACAACTAGGAAACTCGT 60.106 44.000 2.67 0.00 43.67 4.18
5154 6103 5.125097 TCCTTAGCTACAACTAGGAAACTCG 59.875 44.000 8.41 0.00 43.67 4.18
5155 6104 6.527057 TCCTTAGCTACAACTAGGAAACTC 57.473 41.667 8.41 0.00 43.67 3.01
5157 6106 9.833917 ATTAATCCTTAGCTACAACTAGGAAAC 57.166 33.333 13.78 0.00 0.00 2.78
5246 6195 3.684788 AGTAATGAAGCACATCGTCCAAC 59.315 43.478 0.00 0.00 38.38 3.77
5251 6200 3.895232 AGGAGTAATGAAGCACATCGT 57.105 42.857 0.00 0.00 38.38 3.73
5253 6202 9.937175 GTTTAATTAGGAGTAATGAAGCACATC 57.063 33.333 0.00 0.00 38.38 3.06
5261 6210 9.184523 CCCACATTGTTTAATTAGGAGTAATGA 57.815 33.333 0.00 0.00 0.00 2.57
5284 6233 7.373617 TCAGACTATACAAAATATGAGCCCA 57.626 36.000 0.00 0.00 0.00 5.36
5301 6250 3.969287 AAGCAATGTGAGCTCAGACTA 57.031 42.857 18.89 4.43 42.53 2.59
5437 6388 4.136796 TCATAATTGCCACATGTAGCCTC 58.863 43.478 13.84 0.00 0.00 4.70
5446 6397 8.366401 CAACCCAATATAATCATAATTGCCACA 58.634 33.333 0.00 0.00 0.00 4.17
5447 6398 7.818930 CCAACCCAATATAATCATAATTGCCAC 59.181 37.037 0.00 0.00 0.00 5.01
5450 6401 7.761249 GCTCCAACCCAATATAATCATAATTGC 59.239 37.037 0.00 0.00 0.00 3.56
5487 6438 3.015327 AGCATTTCTTAGCAAGCTCTGG 58.985 45.455 0.00 0.00 0.00 3.86
5497 6448 3.270877 ACGCCTTACCAGCATTTCTTAG 58.729 45.455 0.00 0.00 0.00 2.18
5516 6467 1.095228 AGGATGCAACGCCCATAACG 61.095 55.000 0.00 0.00 0.00 3.18
5518 6469 0.034574 ACAGGATGCAACGCCCATAA 60.035 50.000 0.00 0.00 42.53 1.90
5554 6505 3.116939 TCCTCCAGCTTAAGATCTAGGCT 60.117 47.826 6.67 10.08 0.00 4.58
5559 6510 4.347583 CCATTCTCCTCCAGCTTAAGATCT 59.652 45.833 6.67 0.00 0.00 2.75
5578 6529 5.491982 GGATCAGGAATATAACGCTCCATT 58.508 41.667 0.00 0.00 0.00 3.16
5589 6540 4.345257 AGTTGTAGCACGGATCAGGAATAT 59.655 41.667 0.00 0.00 0.00 1.28
5657 6608 2.108168 AGGTCTTGCAGAAGCCGTATA 58.892 47.619 0.00 0.00 41.13 1.47
5708 6660 2.966050 TGTATGTATGCACGCTTGTCA 58.034 42.857 0.00 0.00 0.00 3.58
5802 6754 9.444600 GTTTCTTGTGGTTCCACTCTATATTTA 57.555 33.333 20.48 0.00 37.78 1.40
5849 6801 6.889177 TGCTACACAATTTAATCCCTCATCAA 59.111 34.615 0.00 0.00 0.00 2.57
5854 6806 7.067494 ACATCTTGCTACACAATTTAATCCCTC 59.933 37.037 0.00 0.00 37.72 4.30
5857 6809 7.975866 CACATCTTGCTACACAATTTAATCC 57.024 36.000 0.00 0.00 37.72 3.01
5902 6854 8.261492 AGAGATCACTGTATGACATGTTTTTC 57.739 34.615 0.00 0.00 41.24 2.29
5929 6882 7.578310 AGAATGCTGTATGACATTATTGCTT 57.422 32.000 0.00 0.00 36.65 3.91
5982 6936 2.031870 ACACAAAGAAGGGGAAGTTGC 58.968 47.619 0.00 0.00 0.00 4.17
6010 6964 5.954150 ACTTCATAACATTCCTTGGCTCAAT 59.046 36.000 0.00 0.00 0.00 2.57
6085 7040 4.344679 ACCCACTCAATCAGATTTTTGCAA 59.655 37.500 0.00 0.00 0.00 4.08
6086 7041 3.896888 ACCCACTCAATCAGATTTTTGCA 59.103 39.130 0.00 0.00 0.00 4.08
6087 7042 4.022068 TGACCCACTCAATCAGATTTTTGC 60.022 41.667 0.00 0.00 0.00 3.68
6088 7043 5.242393 AGTGACCCACTCAATCAGATTTTTG 59.758 40.000 0.00 0.00 41.21 2.44
6111 7079 9.800433 TGCCATTACATAACATTTTGACATTAG 57.200 29.630 0.00 0.00 0.00 1.73
6136 7104 7.758495 ACAAAGTTAATATTTTAGCCTCGGTG 58.242 34.615 0.00 0.00 0.00 4.94
6138 7106 9.931210 CTAACAAAGTTAATATTTTAGCCTCGG 57.069 33.333 0.00 0.00 0.00 4.63
6160 7128 5.230942 AGCAGACAGTGACATGTAACTAAC 58.769 41.667 15.84 12.16 32.25 2.34
6166 7134 6.479990 GCATAATTAGCAGACAGTGACATGTA 59.520 38.462 0.00 0.00 32.25 2.29
6167 7135 5.295292 GCATAATTAGCAGACAGTGACATGT 59.705 40.000 0.00 0.00 35.68 3.21
6168 7136 5.295045 TGCATAATTAGCAGACAGTGACATG 59.705 40.000 0.00 0.00 37.02 3.21
6169 7137 5.430886 TGCATAATTAGCAGACAGTGACAT 58.569 37.500 0.00 0.00 37.02 3.06
6206 7200 3.173668 TGCCGTGTCAGATACATAACC 57.826 47.619 0.00 0.00 41.10 2.85
6285 7279 7.658575 GCATATTTGGGTAAGATTTTGCATCAT 59.341 33.333 0.00 0.00 0.00 2.45
6294 7288 9.660544 ATTAGAAAGGCATATTTGGGTAAGATT 57.339 29.630 0.00 0.00 0.00 2.40
6350 7344 2.008242 AAATAGGGTGCAAGTTGGCA 57.992 45.000 4.75 0.38 42.53 4.92
6398 7392 8.706322 AGACCAACATTAAAAGGTAAACATCT 57.294 30.769 0.00 0.00 33.77 2.90
6422 7416 3.488721 GCTTCTTGTGCCTGCATATCAAG 60.489 47.826 12.31 12.31 37.44 3.02
6452 7460 9.998106 GATTTTCCAACTCTATAATAGCTACCA 57.002 33.333 0.00 0.00 0.00 3.25
6480 7488 0.687354 AGTTCTACACAGCCTGGTGG 59.313 55.000 0.00 0.00 43.08 4.61
6509 7517 5.183228 GTCTTGTGGCAAAAGCTACCTATA 58.817 41.667 12.75 0.00 0.00 1.31
6510 7518 4.010349 GTCTTGTGGCAAAAGCTACCTAT 58.990 43.478 12.75 0.00 0.00 2.57
6527 7535 9.743057 CATTTCTAGATGAACTACTAGGTCTTG 57.257 37.037 2.76 0.00 37.34 3.02
6556 7564 5.105752 TGAAACAAAATGAAAAGTGGTCCG 58.894 37.500 0.00 0.00 0.00 4.79
6613 7621 6.096846 ACCTGAAGCTGTCAAAAACAATAAGT 59.903 34.615 0.00 0.00 37.45 2.24
6614 7622 6.418819 CACCTGAAGCTGTCAAAAACAATAAG 59.581 38.462 0.00 0.00 37.45 1.73
6637 7645 3.968724 GCGTTCATCAAGTGTTTCTTCAC 59.031 43.478 0.00 0.00 38.46 3.18
6670 7678 1.457346 CCAACTTCCACTGGCTGATC 58.543 55.000 0.00 0.00 0.00 2.92
6731 7739 2.092592 TGATGCATCTTCCAGCTCATGT 60.093 45.455 26.32 0.00 0.00 3.21
6750 7758 2.544721 AGGATGAAGGAACTCAGCTGA 58.455 47.619 17.19 17.19 38.49 4.26
6779 7787 4.414852 CCAGACCTGATTTGTTAATTGCG 58.585 43.478 0.00 0.00 0.00 4.85
6785 7793 2.026262 GGAGCCCAGACCTGATTTGTTA 60.026 50.000 0.00 0.00 0.00 2.41
6786 7794 1.272147 GGAGCCCAGACCTGATTTGTT 60.272 52.381 0.00 0.00 0.00 2.83
6797 7805 1.925455 CCCCAAAGAGGAGCCCAGA 60.925 63.158 0.00 0.00 41.22 3.86
6811 7819 3.208570 TCTTATTACACCTGTCCCCCA 57.791 47.619 0.00 0.00 0.00 4.96
6812 7820 4.579647 TTTCTTATTACACCTGTCCCCC 57.420 45.455 0.00 0.00 0.00 5.40
6872 7880 2.094078 TGCTTGCTGAACAGTTTTGCTT 60.094 40.909 11.21 0.00 0.00 3.91
6873 7881 1.477700 TGCTTGCTGAACAGTTTTGCT 59.522 42.857 11.21 0.00 0.00 3.91
6877 7885 1.473258 TGGTGCTTGCTGAACAGTTT 58.527 45.000 3.77 0.00 0.00 2.66
6975 7983 8.625651 CCGATCAACTATTATCGAATAGGATCT 58.374 37.037 14.68 0.00 46.14 2.75
6995 8003 7.604545 TCAACACAGTAATAATTCAACCGATCA 59.395 33.333 0.00 0.00 0.00 2.92
6998 8006 7.604545 TCATCAACACAGTAATAATTCAACCGA 59.395 33.333 0.00 0.00 0.00 4.69
7017 8025 5.178996 CCTCATCTTCATCCGAATCATCAAC 59.821 44.000 0.00 0.00 0.00 3.18
7019 8027 4.346127 ACCTCATCTTCATCCGAATCATCA 59.654 41.667 0.00 0.00 0.00 3.07
7028 8036 5.359194 TCAAAGGTACCTCATCTTCATCC 57.641 43.478 16.64 0.00 0.00 3.51
7122 8130 5.197451 ACCAAAACACACATCCTTTCTACA 58.803 37.500 0.00 0.00 0.00 2.74
7198 8206 5.292589 GGTAACGACTGTTCTTCAACTTGAA 59.707 40.000 4.16 4.16 39.54 2.69
7205 8213 4.279922 TGATCTGGTAACGACTGTTCTTCA 59.720 41.667 0.00 0.00 39.54 3.02
7213 8221 3.065510 CACGAGATGATCTGGTAACGACT 59.934 47.826 9.79 0.00 33.02 4.18
7220 8228 1.189752 ACAGCACGAGATGATCTGGT 58.810 50.000 4.80 4.15 35.79 4.00
7232 8240 1.808799 CTGGAGCAGCTACAGCACG 60.809 63.158 22.23 0.00 45.16 5.34
7257 8272 4.560716 CGGAGTCCACAGTTTCATGTTCTA 60.561 45.833 10.49 0.00 0.00 2.10
7261 8276 1.878102 GCGGAGTCCACAGTTTCATGT 60.878 52.381 10.49 0.00 0.00 3.21
7317 8332 9.771534 ATAAGAGGAGCTAATTAAACTGTGATC 57.228 33.333 0.00 0.00 0.00 2.92
7459 8476 2.125512 GGACGACGCAGCATCCTT 60.126 61.111 0.00 0.00 0.00 3.36
7597 8614 4.840168 GCGAAATACGGTAGCCCA 57.160 55.556 0.00 0.00 42.83 5.36
7613 8630 6.365247 TGTCGTCAGTACAGAAATAGAAAAGC 59.635 38.462 0.00 0.00 0.00 3.51
7715 8732 2.671619 CTCGCCTCCCGCCAAAAA 60.672 61.111 0.00 0.00 36.73 1.94
7716 8733 2.684192 TTTCTCGCCTCCCGCCAAAA 62.684 55.000 0.00 0.00 36.73 2.44
7717 8734 2.684192 TTTTCTCGCCTCCCGCCAAA 62.684 55.000 0.00 0.00 36.73 3.28
7718 8735 3.185299 TTTTCTCGCCTCCCGCCAA 62.185 57.895 0.00 0.00 36.73 4.52
7719 8736 3.605749 CTTTTCTCGCCTCCCGCCA 62.606 63.158 0.00 0.00 36.73 5.69
7720 8737 2.820037 CTTTTCTCGCCTCCCGCC 60.820 66.667 0.00 0.00 36.73 6.13
7721 8738 1.235281 AAACTTTTCTCGCCTCCCGC 61.235 55.000 0.00 0.00 36.73 6.13
7722 8739 0.796927 GAAACTTTTCTCGCCTCCCG 59.203 55.000 0.00 0.00 34.41 5.14
7723 8740 1.166129 GGAAACTTTTCTCGCCTCCC 58.834 55.000 1.88 0.00 37.35 4.30
7724 8741 1.535896 GTGGAAACTTTTCTCGCCTCC 59.464 52.381 1.88 0.00 37.35 4.30
7725 8742 2.031944 GTGTGGAAACTTTTCTCGCCTC 60.032 50.000 1.88 0.00 37.35 4.70
7726 8743 1.947456 GTGTGGAAACTTTTCTCGCCT 59.053 47.619 1.88 0.00 37.35 5.52
7727 8744 1.947456 AGTGTGGAAACTTTTCTCGCC 59.053 47.619 1.88 0.00 37.35 5.54
7834 8852 7.229306 ACTTATTCCGCATACAAATCATGTGAT 59.771 33.333 0.00 0.00 43.77 3.06
7835 8853 6.542005 ACTTATTCCGCATACAAATCATGTGA 59.458 34.615 0.00 0.00 43.77 3.58
8113 9136 9.692749 ATGTGGTTTCAATATCAGTATACTACG 57.307 33.333 4.74 0.00 0.00 3.51
8186 9209 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
8187 9210 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
8188 9211 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
8189 9212 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
8190 9213 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
8191 9214 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
8192 9215 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
8193 9216 9.048446 TGTAAAAACGCTCTTATATTATGGGAC 57.952 33.333 0.00 0.00 0.00 4.46
8194 9217 9.048446 GTGTAAAAACGCTCTTATATTATGGGA 57.952 33.333 0.00 0.00 0.00 4.37
8195 9218 9.052759 AGTGTAAAAACGCTCTTATATTATGGG 57.947 33.333 0.00 0.00 0.00 4.00
8219 9242 3.626670 AGCGCTTTCGACACTATACTAGT 59.373 43.478 2.64 0.00 37.42 2.57
8220 9243 4.212213 AGCGCTTTCGACACTATACTAG 57.788 45.455 2.64 0.00 38.10 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.