Multiple sequence alignment - TraesCS4A01G063900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G063900 chr4A 100.000 3563 0 0 1 3563 60729511 60733073 0.000000e+00 6580.0
1 TraesCS4A01G063900 chr4A 89.028 1841 164 20 806 2636 60879813 60881625 0.000000e+00 2246.0
2 TraesCS4A01G063900 chr4A 87.097 62 8 0 2699 2760 668116439 668116378 1.770000e-08 71.3
3 TraesCS4A01G063900 chr4D 91.663 2423 143 31 313 2695 403181469 403183872 0.000000e+00 3301.0
4 TraesCS4A01G063900 chr4D 88.598 1798 168 19 864 2636 403199631 403201416 0.000000e+00 2150.0
5 TraesCS4A01G063900 chr4D 94.000 50 1 2 800 849 403181988 403182035 1.370000e-09 75.0
6 TraesCS4A01G063900 chr4B 94.672 2121 87 10 584 2694 500052427 500054531 0.000000e+00 3267.0
7 TraesCS4A01G063900 chr4B 90.290 1658 145 10 990 2638 500079136 500080786 0.000000e+00 2156.0
8 TraesCS4A01G063900 chr4B 88.525 61 5 2 2699 2757 638577763 638577823 4.930000e-09 73.1
9 TraesCS4A01G063900 chr2D 89.004 1446 145 5 1123 2555 645838270 645839714 0.000000e+00 1777.0
10 TraesCS4A01G063900 chr2D 78.723 188 31 8 129 315 80140982 80141161 2.250000e-22 117.0
11 TraesCS4A01G063900 chr2D 87.500 64 4 3 2694 2757 46194026 46193967 1.770000e-08 71.3
12 TraesCS4A01G063900 chr2A 88.897 1423 147 9 1123 2538 771538750 771540168 0.000000e+00 1742.0
13 TraesCS4A01G063900 chr2A 98.894 814 8 1 2751 3563 306009194 306008381 0.000000e+00 1452.0
14 TraesCS4A01G063900 chr2A 76.786 168 32 6 126 291 735584962 735585124 1.760000e-13 87.9
15 TraesCS4A01G063900 chr3B 99.140 814 7 0 2750 3563 274894731 274893918 0.000000e+00 1465.0
16 TraesCS4A01G063900 chr3B 98.276 58 1 0 2699 2756 78582959 78583016 6.290000e-18 102.0
17 TraesCS4A01G063900 chr3B 96.875 32 1 0 419 450 655854208 655854177 2.000000e-03 54.7
18 TraesCS4A01G063900 chr7B 99.381 808 4 1 2756 3563 584810569 584809763 0.000000e+00 1463.0
19 TraesCS4A01G063900 chr7B 98.775 816 10 0 2748 3563 252280604 252281419 0.000000e+00 1452.0
20 TraesCS4A01G063900 chr7B 83.942 137 18 4 125 258 595310815 595310680 1.040000e-25 128.0
21 TraesCS4A01G063900 chr5B 99.380 807 5 0 2757 3563 54498970 54499776 0.000000e+00 1463.0
22 TraesCS4A01G063900 chr5B 99.134 808 7 0 2756 3563 348135442 348136249 0.000000e+00 1454.0
23 TraesCS4A01G063900 chr6B 99.257 807 6 0 2757 3563 544569612 544568806 0.000000e+00 1458.0
24 TraesCS4A01G063900 chr6B 87.719 57 7 0 411 467 165904855 165904911 2.300000e-07 67.6
25 TraesCS4A01G063900 chr6B 86.441 59 8 0 2699 2757 118891085 118891143 8.260000e-07 65.8
26 TraesCS4A01G063900 chr5A 99.257 807 6 0 2757 3563 535372622 535373428 0.000000e+00 1458.0
27 TraesCS4A01G063900 chr2B 99.136 810 5 1 2756 3563 291741878 291742687 0.000000e+00 1456.0
28 TraesCS4A01G063900 chr2B 87.817 591 60 6 1123 1713 789672745 789673323 0.000000e+00 682.0
29 TraesCS4A01G063900 chr2B 88.400 250 26 1 2305 2551 789673367 789673616 7.480000e-77 298.0
30 TraesCS4A01G063900 chr2B 92.857 56 2 2 381 434 783702226 783702281 2.950000e-11 80.5
31 TraesCS4A01G063900 chr3A 75.887 564 107 23 1900 2455 576686723 576687265 9.810000e-66 261.0
32 TraesCS4A01G063900 chr3A 98.305 59 1 0 2699 2757 61476440 61476498 1.750000e-18 104.0
33 TraesCS4A01G063900 chrUn 84.416 154 20 4 129 281 87773532 87773682 7.970000e-32 148.0
34 TraesCS4A01G063900 chrUn 81.884 138 21 4 131 265 159641978 159641842 2.910000e-21 113.0
35 TraesCS4A01G063900 chrUn 81.884 138 21 4 131 265 336888307 336888171 2.910000e-21 113.0
36 TraesCS4A01G063900 chr1D 81.503 173 28 4 132 304 494934495 494934327 4.800000e-29 139.0
37 TraesCS4A01G063900 chr7A 82.468 154 21 6 129 281 721221090 721221238 2.890000e-26 130.0
38 TraesCS4A01G063900 chr7A 89.831 59 5 1 2695 2753 547553801 547553858 1.370000e-09 75.0
39 TraesCS4A01G063900 chr3D 80.124 161 21 6 156 316 5867018 5866869 3.760000e-20 110.0
40 TraesCS4A01G063900 chr6D 100.000 41 0 0 1364 1404 267729391 267729351 3.810000e-10 76.8
41 TraesCS4A01G063900 chr6A 92.157 51 4 0 2699 2749 520426150 520426100 4.930000e-09 73.1
42 TraesCS4A01G063900 chr1B 85.714 70 7 3 2693 2759 300945742 300945811 1.770000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G063900 chr4A 60729511 60733073 3562 False 6580 6580 100.0000 1 3563 1 chr4A.!!$F1 3562
1 TraesCS4A01G063900 chr4A 60879813 60881625 1812 False 2246 2246 89.0280 806 2636 1 chr4A.!!$F2 1830
2 TraesCS4A01G063900 chr4D 403199631 403201416 1785 False 2150 2150 88.5980 864 2636 1 chr4D.!!$F1 1772
3 TraesCS4A01G063900 chr4D 403181469 403183872 2403 False 1688 3301 92.8315 313 2695 2 chr4D.!!$F2 2382
4 TraesCS4A01G063900 chr4B 500052427 500054531 2104 False 3267 3267 94.6720 584 2694 1 chr4B.!!$F1 2110
5 TraesCS4A01G063900 chr4B 500079136 500080786 1650 False 2156 2156 90.2900 990 2638 1 chr4B.!!$F2 1648
6 TraesCS4A01G063900 chr2D 645838270 645839714 1444 False 1777 1777 89.0040 1123 2555 1 chr2D.!!$F2 1432
7 TraesCS4A01G063900 chr2A 771538750 771540168 1418 False 1742 1742 88.8970 1123 2538 1 chr2A.!!$F2 1415
8 TraesCS4A01G063900 chr2A 306008381 306009194 813 True 1452 1452 98.8940 2751 3563 1 chr2A.!!$R1 812
9 TraesCS4A01G063900 chr3B 274893918 274894731 813 True 1465 1465 99.1400 2750 3563 1 chr3B.!!$R1 813
10 TraesCS4A01G063900 chr7B 584809763 584810569 806 True 1463 1463 99.3810 2756 3563 1 chr7B.!!$R1 807
11 TraesCS4A01G063900 chr7B 252280604 252281419 815 False 1452 1452 98.7750 2748 3563 1 chr7B.!!$F1 815
12 TraesCS4A01G063900 chr5B 54498970 54499776 806 False 1463 1463 99.3800 2757 3563 1 chr5B.!!$F1 806
13 TraesCS4A01G063900 chr5B 348135442 348136249 807 False 1454 1454 99.1340 2756 3563 1 chr5B.!!$F2 807
14 TraesCS4A01G063900 chr6B 544568806 544569612 806 True 1458 1458 99.2570 2757 3563 1 chr6B.!!$R1 806
15 TraesCS4A01G063900 chr5A 535372622 535373428 806 False 1458 1458 99.2570 2757 3563 1 chr5A.!!$F1 806
16 TraesCS4A01G063900 chr2B 291741878 291742687 809 False 1456 1456 99.1360 2756 3563 1 chr2B.!!$F1 807
17 TraesCS4A01G063900 chr2B 789672745 789673616 871 False 490 682 88.1085 1123 2551 2 chr2B.!!$F3 1428
18 TraesCS4A01G063900 chr3A 576686723 576687265 542 False 261 261 75.8870 1900 2455 1 chr3A.!!$F2 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.038166 ATTCCAGAAGCCCGCAAGAA 59.962 50.0 0.0 0.0 43.02 2.52 F
73 74 0.038166 TTCCAGAAGCCCGCAAGAAT 59.962 50.0 0.0 0.0 43.02 2.40 F
97 98 0.328258 CATCCTTTGTCTCCCCGGTT 59.672 55.0 0.0 0.0 0.00 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 1961 0.948623 CTCACCATGAACCGCGACAA 60.949 55.000 8.23 0.0 0.0 3.18 R
2555 2658 4.761235 TCTTGTCGTCGTACTCAATTCT 57.239 40.909 0.00 0.0 0.0 2.40 R
2565 2668 0.594602 TTCCGTCATCTTGTCGTCGT 59.405 50.000 0.00 0.0 0.0 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.421567 GAGTTGCAACCAAGTCCCT 57.578 52.632 25.62 4.58 42.84 4.20
21 22 0.954452 GAGTTGCAACCAAGTCCCTG 59.046 55.000 25.62 0.00 42.84 4.45
22 23 0.550914 AGTTGCAACCAAGTCCCTGA 59.449 50.000 25.62 0.00 28.47 3.86
23 24 1.064017 AGTTGCAACCAAGTCCCTGAA 60.064 47.619 25.62 0.00 28.47 3.02
24 25 1.754226 GTTGCAACCAAGTCCCTGAAA 59.246 47.619 19.15 0.00 0.00 2.69
25 26 2.365293 GTTGCAACCAAGTCCCTGAAAT 59.635 45.455 19.15 0.00 0.00 2.17
26 27 3.517296 TGCAACCAAGTCCCTGAAATA 57.483 42.857 0.00 0.00 0.00 1.40
27 28 3.838565 TGCAACCAAGTCCCTGAAATAA 58.161 40.909 0.00 0.00 0.00 1.40
28 29 4.415596 TGCAACCAAGTCCCTGAAATAAT 58.584 39.130 0.00 0.00 0.00 1.28
29 30 5.575157 TGCAACCAAGTCCCTGAAATAATA 58.425 37.500 0.00 0.00 0.00 0.98
30 31 5.652014 TGCAACCAAGTCCCTGAAATAATAG 59.348 40.000 0.00 0.00 0.00 1.73
31 32 5.885912 GCAACCAAGTCCCTGAAATAATAGA 59.114 40.000 0.00 0.00 0.00 1.98
32 33 6.547510 GCAACCAAGTCCCTGAAATAATAGAT 59.452 38.462 0.00 0.00 0.00 1.98
33 34 7.469181 GCAACCAAGTCCCTGAAATAATAGATG 60.469 40.741 0.00 0.00 0.00 2.90
34 35 6.064717 ACCAAGTCCCTGAAATAATAGATGC 58.935 40.000 0.00 0.00 0.00 3.91
35 36 6.126361 ACCAAGTCCCTGAAATAATAGATGCT 60.126 38.462 0.00 0.00 0.00 3.79
36 37 7.072454 ACCAAGTCCCTGAAATAATAGATGCTA 59.928 37.037 0.00 0.00 0.00 3.49
37 38 7.939039 CCAAGTCCCTGAAATAATAGATGCTAA 59.061 37.037 0.00 0.00 0.00 3.09
38 39 8.997323 CAAGTCCCTGAAATAATAGATGCTAAG 58.003 37.037 0.00 0.00 0.00 2.18
39 40 8.497910 AGTCCCTGAAATAATAGATGCTAAGA 57.502 34.615 0.00 0.00 0.00 2.10
40 41 8.938883 AGTCCCTGAAATAATAGATGCTAAGAA 58.061 33.333 0.00 0.00 0.00 2.52
41 42 9.732130 GTCCCTGAAATAATAGATGCTAAGAAT 57.268 33.333 0.00 0.00 0.00 2.40
51 52 8.994429 AATAGATGCTAAGAATATTCACTCCG 57.006 34.615 17.56 2.73 0.00 4.63
52 53 5.788450 AGATGCTAAGAATATTCACTCCGG 58.212 41.667 17.56 0.00 0.00 5.14
53 54 5.540337 AGATGCTAAGAATATTCACTCCGGA 59.460 40.000 17.56 2.93 0.00 5.14
54 55 5.808366 TGCTAAGAATATTCACTCCGGAT 57.192 39.130 17.56 0.00 0.00 4.18
55 56 6.174720 TGCTAAGAATATTCACTCCGGATT 57.825 37.500 17.56 0.00 0.00 3.01
56 57 6.223852 TGCTAAGAATATTCACTCCGGATTC 58.776 40.000 17.56 3.80 0.00 2.52
57 58 5.639931 GCTAAGAATATTCACTCCGGATTCC 59.360 44.000 17.56 0.00 0.00 3.01
58 59 5.630415 AAGAATATTCACTCCGGATTCCA 57.370 39.130 17.56 0.00 0.00 3.53
59 60 5.220710 AGAATATTCACTCCGGATTCCAG 57.779 43.478 17.56 0.00 0.00 3.86
60 61 4.901849 AGAATATTCACTCCGGATTCCAGA 59.098 41.667 17.56 0.00 0.00 3.86
61 62 5.366768 AGAATATTCACTCCGGATTCCAGAA 59.633 40.000 17.56 5.63 0.00 3.02
62 63 3.550437 ATTCACTCCGGATTCCAGAAG 57.450 47.619 3.57 0.00 0.00 2.85
63 64 0.537188 TCACTCCGGATTCCAGAAGC 59.463 55.000 3.57 0.00 0.00 3.86
64 65 0.462759 CACTCCGGATTCCAGAAGCC 60.463 60.000 3.57 4.56 43.09 4.35
65 66 1.147153 CTCCGGATTCCAGAAGCCC 59.853 63.158 3.57 1.02 43.59 5.19
66 67 2.203070 CCGGATTCCAGAAGCCCG 60.203 66.667 9.01 11.79 43.59 6.13
67 68 2.897350 CGGATTCCAGAAGCCCGC 60.897 66.667 9.01 0.00 43.59 6.13
68 69 2.272146 GGATTCCAGAAGCCCGCA 59.728 61.111 3.21 0.00 40.81 5.69
69 70 1.378514 GGATTCCAGAAGCCCGCAA 60.379 57.895 3.21 0.00 40.81 4.85
70 71 1.379642 GGATTCCAGAAGCCCGCAAG 61.380 60.000 3.21 0.00 40.81 4.01
71 72 0.392998 GATTCCAGAAGCCCGCAAGA 60.393 55.000 0.00 0.00 43.02 3.02
72 73 0.038166 ATTCCAGAAGCCCGCAAGAA 59.962 50.000 0.00 0.00 43.02 2.52
73 74 0.038166 TTCCAGAAGCCCGCAAGAAT 59.962 50.000 0.00 0.00 43.02 2.40
74 75 0.908910 TCCAGAAGCCCGCAAGAATA 59.091 50.000 0.00 0.00 43.02 1.75
75 76 1.490490 TCCAGAAGCCCGCAAGAATAT 59.510 47.619 0.00 0.00 43.02 1.28
76 77 2.092429 TCCAGAAGCCCGCAAGAATATT 60.092 45.455 0.00 0.00 43.02 1.28
77 78 2.689983 CCAGAAGCCCGCAAGAATATTT 59.310 45.455 0.00 0.00 43.02 1.40
78 79 3.243201 CCAGAAGCCCGCAAGAATATTTC 60.243 47.826 0.00 0.00 43.02 2.17
79 80 3.378112 CAGAAGCCCGCAAGAATATTTCA 59.622 43.478 0.00 0.00 43.02 2.69
80 81 4.037208 CAGAAGCCCGCAAGAATATTTCAT 59.963 41.667 0.00 0.00 43.02 2.57
81 82 4.276926 AGAAGCCCGCAAGAATATTTCATC 59.723 41.667 0.00 0.00 43.02 2.92
82 83 2.887152 AGCCCGCAAGAATATTTCATCC 59.113 45.455 0.00 0.00 43.02 3.51
83 84 2.887152 GCCCGCAAGAATATTTCATCCT 59.113 45.455 0.00 0.00 43.02 3.24
84 85 3.319122 GCCCGCAAGAATATTTCATCCTT 59.681 43.478 0.00 0.00 43.02 3.36
85 86 4.202151 GCCCGCAAGAATATTTCATCCTTT 60.202 41.667 0.00 0.00 43.02 3.11
86 87 5.284079 CCCGCAAGAATATTTCATCCTTTG 58.716 41.667 0.00 0.00 43.02 2.77
87 88 5.163519 CCCGCAAGAATATTTCATCCTTTGT 60.164 40.000 0.00 0.00 43.02 2.83
88 89 5.973565 CCGCAAGAATATTTCATCCTTTGTC 59.026 40.000 0.00 0.00 43.02 3.18
89 90 6.183360 CCGCAAGAATATTTCATCCTTTGTCT 60.183 38.462 0.00 0.00 43.02 3.41
90 91 6.909357 CGCAAGAATATTTCATCCTTTGTCTC 59.091 38.462 0.00 0.00 43.02 3.36
91 92 7.199078 GCAAGAATATTTCATCCTTTGTCTCC 58.801 38.462 0.00 0.00 0.00 3.71
92 93 7.682981 GCAAGAATATTTCATCCTTTGTCTCCC 60.683 40.741 0.00 0.00 0.00 4.30
93 94 6.368805 AGAATATTTCATCCTTTGTCTCCCC 58.631 40.000 0.00 0.00 0.00 4.81
94 95 2.489938 TTTCATCCTTTGTCTCCCCG 57.510 50.000 0.00 0.00 0.00 5.73
95 96 0.618458 TTCATCCTTTGTCTCCCCGG 59.382 55.000 0.00 0.00 0.00 5.73
96 97 0.546747 TCATCCTTTGTCTCCCCGGT 60.547 55.000 0.00 0.00 0.00 5.28
97 98 0.328258 CATCCTTTGTCTCCCCGGTT 59.672 55.000 0.00 0.00 0.00 4.44
98 99 1.557832 CATCCTTTGTCTCCCCGGTTA 59.442 52.381 0.00 0.00 0.00 2.85
99 100 1.961133 TCCTTTGTCTCCCCGGTTAT 58.039 50.000 0.00 0.00 0.00 1.89
100 101 1.557832 TCCTTTGTCTCCCCGGTTATG 59.442 52.381 0.00 0.00 0.00 1.90
101 102 1.408266 CCTTTGTCTCCCCGGTTATGG 60.408 57.143 0.00 0.00 0.00 2.74
102 103 1.280998 CTTTGTCTCCCCGGTTATGGT 59.719 52.381 0.00 0.00 0.00 3.55
103 104 1.364269 TTGTCTCCCCGGTTATGGTT 58.636 50.000 0.00 0.00 0.00 3.67
104 105 0.906775 TGTCTCCCCGGTTATGGTTC 59.093 55.000 0.00 0.00 0.00 3.62
105 106 0.906775 GTCTCCCCGGTTATGGTTCA 59.093 55.000 0.00 0.00 0.00 3.18
106 107 1.489230 GTCTCCCCGGTTATGGTTCAT 59.511 52.381 0.00 0.00 0.00 2.57
107 108 1.488812 TCTCCCCGGTTATGGTTCATG 59.511 52.381 0.00 0.00 0.00 3.07
108 109 1.211949 CTCCCCGGTTATGGTTCATGT 59.788 52.381 0.00 0.00 0.00 3.21
109 110 1.065053 TCCCCGGTTATGGTTCATGTG 60.065 52.381 0.00 0.00 0.00 3.21
110 111 0.738389 CCCGGTTATGGTTCATGTGC 59.262 55.000 0.00 0.00 0.00 4.57
111 112 1.458398 CCGGTTATGGTTCATGTGCA 58.542 50.000 0.00 0.00 0.00 4.57
112 113 2.023673 CCGGTTATGGTTCATGTGCAT 58.976 47.619 0.00 0.00 0.00 3.96
113 114 2.033299 CCGGTTATGGTTCATGTGCATC 59.967 50.000 0.00 0.00 0.00 3.91
114 115 2.033299 CGGTTATGGTTCATGTGCATCC 59.967 50.000 0.00 0.00 0.00 3.51
115 116 2.033299 GGTTATGGTTCATGTGCATCCG 59.967 50.000 0.00 0.00 0.00 4.18
116 117 2.942376 GTTATGGTTCATGTGCATCCGA 59.058 45.455 0.00 0.00 0.00 4.55
117 118 2.353357 ATGGTTCATGTGCATCCGAT 57.647 45.000 0.00 0.00 0.00 4.18
118 119 2.127271 TGGTTCATGTGCATCCGATT 57.873 45.000 0.00 0.00 0.00 3.34
119 120 3.274095 TGGTTCATGTGCATCCGATTA 57.726 42.857 0.00 0.00 0.00 1.75
120 121 3.205338 TGGTTCATGTGCATCCGATTAG 58.795 45.455 0.00 0.00 0.00 1.73
121 122 3.206150 GGTTCATGTGCATCCGATTAGT 58.794 45.455 0.00 0.00 0.00 2.24
122 123 4.141824 TGGTTCATGTGCATCCGATTAGTA 60.142 41.667 0.00 0.00 0.00 1.82
123 124 4.211374 GGTTCATGTGCATCCGATTAGTAC 59.789 45.833 0.00 0.00 0.00 2.73
124 125 3.990092 TCATGTGCATCCGATTAGTACC 58.010 45.455 0.00 0.00 0.00 3.34
125 126 3.386402 TCATGTGCATCCGATTAGTACCA 59.614 43.478 0.00 0.00 0.00 3.25
126 127 3.897141 TGTGCATCCGATTAGTACCAA 57.103 42.857 0.00 0.00 0.00 3.67
127 128 4.415881 TGTGCATCCGATTAGTACCAAT 57.584 40.909 0.00 0.00 0.00 3.16
128 129 5.538849 TGTGCATCCGATTAGTACCAATA 57.461 39.130 0.00 0.00 0.00 1.90
129 130 5.538118 TGTGCATCCGATTAGTACCAATAG 58.462 41.667 0.00 0.00 0.00 1.73
130 131 5.069914 TGTGCATCCGATTAGTACCAATAGT 59.930 40.000 0.00 0.00 0.00 2.12
131 132 5.989777 GTGCATCCGATTAGTACCAATAGTT 59.010 40.000 0.00 0.00 0.00 2.24
132 133 6.482308 GTGCATCCGATTAGTACCAATAGTTT 59.518 38.462 0.00 0.00 0.00 2.66
133 134 7.012044 GTGCATCCGATTAGTACCAATAGTTTT 59.988 37.037 0.00 0.00 0.00 2.43
134 135 7.011950 TGCATCCGATTAGTACCAATAGTTTTG 59.988 37.037 0.00 0.00 0.00 2.44
135 136 7.012044 GCATCCGATTAGTACCAATAGTTTTGT 59.988 37.037 0.00 0.00 0.00 2.83
136 137 8.889717 CATCCGATTAGTACCAATAGTTTTGTT 58.110 33.333 0.00 0.00 0.00 2.83
138 139 9.941325 TCCGATTAGTACCAATAGTTTTGTTAA 57.059 29.630 0.00 0.00 0.00 2.01
144 145 8.967664 AGTACCAATAGTTTTGTTAAGTCACA 57.032 30.769 0.00 0.00 0.00 3.58
145 146 9.052759 AGTACCAATAGTTTTGTTAAGTCACAG 57.947 33.333 0.00 0.00 0.00 3.66
146 147 7.875327 ACCAATAGTTTTGTTAAGTCACAGT 57.125 32.000 0.00 0.00 0.00 3.55
147 148 7.927048 ACCAATAGTTTTGTTAAGTCACAGTC 58.073 34.615 0.00 0.00 0.00 3.51
148 149 7.069569 CCAATAGTTTTGTTAAGTCACAGTCG 58.930 38.462 0.00 0.00 0.00 4.18
149 150 7.042321 CCAATAGTTTTGTTAAGTCACAGTCGA 60.042 37.037 0.00 0.00 0.00 4.20
150 151 5.713822 AGTTTTGTTAAGTCACAGTCGAC 57.286 39.130 7.70 7.70 36.08 4.20
152 153 5.291128 AGTTTTGTTAAGTCACAGTCGACTG 59.709 40.000 37.50 37.50 45.56 3.51
153 154 4.642445 TTGTTAAGTCACAGTCGACTGA 57.358 40.909 43.55 25.29 45.56 3.41
154 155 4.848562 TGTTAAGTCACAGTCGACTGAT 57.151 40.909 43.55 27.80 45.56 2.90
155 156 5.952526 TGTTAAGTCACAGTCGACTGATA 57.047 39.130 43.55 29.63 45.56 2.15
156 157 5.696822 TGTTAAGTCACAGTCGACTGATAC 58.303 41.667 43.55 35.98 45.56 2.24
157 158 5.472478 TGTTAAGTCACAGTCGACTGATACT 59.528 40.000 43.55 37.19 45.56 2.12
158 159 6.016527 TGTTAAGTCACAGTCGACTGATACTT 60.017 38.462 39.46 39.46 45.56 2.24
159 160 4.688511 AGTCACAGTCGACTGATACTTC 57.311 45.455 43.55 26.81 44.59 3.01
160 161 3.125487 AGTCACAGTCGACTGATACTTCG 59.875 47.826 43.55 23.95 44.59 3.79
161 162 3.072211 TCACAGTCGACTGATACTTCGT 58.928 45.455 43.55 21.61 46.59 3.85
162 163 3.501062 TCACAGTCGACTGATACTTCGTT 59.499 43.478 43.55 20.92 46.59 3.85
163 164 4.692155 TCACAGTCGACTGATACTTCGTTA 59.308 41.667 43.55 14.30 46.59 3.18
164 165 5.353400 TCACAGTCGACTGATACTTCGTTAT 59.647 40.000 43.55 19.72 46.59 1.89
165 166 5.452623 CACAGTCGACTGATACTTCGTTATG 59.547 44.000 43.55 25.76 46.59 1.90
166 167 5.123502 ACAGTCGACTGATACTTCGTTATGT 59.876 40.000 43.55 19.81 46.59 2.29
167 168 5.677612 CAGTCGACTGATACTTCGTTATGTC 59.322 44.000 36.73 0.00 46.59 3.06
168 169 5.585445 AGTCGACTGATACTTCGTTATGTCT 59.415 40.000 19.30 0.00 36.60 3.41
169 170 5.902981 GTCGACTGATACTTCGTTATGTCTC 59.097 44.000 8.70 0.00 36.60 3.36
170 171 5.583457 TCGACTGATACTTCGTTATGTCTCA 59.417 40.000 0.00 0.00 36.60 3.27
171 172 5.904630 CGACTGATACTTCGTTATGTCTCAG 59.095 44.000 0.00 0.00 40.73 3.35
172 173 6.457122 CGACTGATACTTCGTTATGTCTCAGT 60.457 42.308 11.89 11.89 46.19 3.41
173 174 6.787225 ACTGATACTTCGTTATGTCTCAGTC 58.213 40.000 7.88 0.00 42.75 3.51
174 175 5.807344 TGATACTTCGTTATGTCTCAGTCG 58.193 41.667 0.00 0.00 0.00 4.18
175 176 5.583457 TGATACTTCGTTATGTCTCAGTCGA 59.417 40.000 0.00 0.00 0.00 4.20
176 177 4.966965 ACTTCGTTATGTCTCAGTCGAT 57.033 40.909 0.00 0.00 0.00 3.59
177 178 7.440255 TGATACTTCGTTATGTCTCAGTCGATA 59.560 37.037 0.00 0.00 0.00 2.92
178 179 5.808403 ACTTCGTTATGTCTCAGTCGATAC 58.192 41.667 0.00 0.00 0.00 2.24
179 180 5.585445 ACTTCGTTATGTCTCAGTCGATACT 59.415 40.000 0.00 0.00 35.91 2.12
180 181 6.760298 ACTTCGTTATGTCTCAGTCGATACTA 59.240 38.462 0.00 0.00 33.48 1.82
181 182 7.441760 ACTTCGTTATGTCTCAGTCGATACTAT 59.558 37.037 0.00 0.00 33.48 2.12
182 183 8.822652 TTCGTTATGTCTCAGTCGATACTATA 57.177 34.615 0.00 0.00 33.48 1.31
183 184 8.999220 TCGTTATGTCTCAGTCGATACTATAT 57.001 34.615 0.00 0.00 33.48 0.86
184 185 9.433153 TCGTTATGTCTCAGTCGATACTATATT 57.567 33.333 0.00 0.00 33.48 1.28
185 186 9.691795 CGTTATGTCTCAGTCGATACTATATTC 57.308 37.037 0.00 0.00 33.48 1.75
207 208 8.937634 ATTCTTTTAATCTTGCATGGTGATTC 57.062 30.769 0.00 0.00 33.24 2.52
208 209 6.554419 TCTTTTAATCTTGCATGGTGATTCG 58.446 36.000 0.00 0.00 33.24 3.34
209 210 5.895636 TTTAATCTTGCATGGTGATTCGT 57.104 34.783 0.00 0.00 33.24 3.85
210 211 6.993786 TTTAATCTTGCATGGTGATTCGTA 57.006 33.333 0.00 0.00 33.24 3.43
211 212 4.882671 AATCTTGCATGGTGATTCGTAC 57.117 40.909 0.00 0.00 0.00 3.67
212 213 3.326836 TCTTGCATGGTGATTCGTACA 57.673 42.857 0.00 0.00 0.00 2.90
213 214 3.000041 TCTTGCATGGTGATTCGTACAC 59.000 45.455 0.00 0.00 37.51 2.90
214 215 2.464157 TGCATGGTGATTCGTACACA 57.536 45.000 0.00 0.00 39.65 3.72
215 216 2.772287 TGCATGGTGATTCGTACACAA 58.228 42.857 0.00 0.00 39.65 3.33
216 217 3.342719 TGCATGGTGATTCGTACACAAT 58.657 40.909 0.00 0.00 39.65 2.71
217 218 3.755905 TGCATGGTGATTCGTACACAATT 59.244 39.130 0.00 0.00 39.65 2.32
218 219 4.217334 TGCATGGTGATTCGTACACAATTT 59.783 37.500 0.00 0.00 39.65 1.82
219 220 5.160641 GCATGGTGATTCGTACACAATTTT 58.839 37.500 0.00 0.00 39.65 1.82
220 221 5.633182 GCATGGTGATTCGTACACAATTTTT 59.367 36.000 0.00 0.00 39.65 1.94
221 222 6.183359 GCATGGTGATTCGTACACAATTTTTC 60.183 38.462 0.00 0.00 39.65 2.29
222 223 6.627395 TGGTGATTCGTACACAATTTTTCT 57.373 33.333 0.00 0.00 39.65 2.52
223 224 7.033530 TGGTGATTCGTACACAATTTTTCTT 57.966 32.000 0.00 0.00 39.65 2.52
224 225 7.484975 TGGTGATTCGTACACAATTTTTCTTT 58.515 30.769 0.00 0.00 39.65 2.52
225 226 7.976734 TGGTGATTCGTACACAATTTTTCTTTT 59.023 29.630 0.00 0.00 39.65 2.27
226 227 8.476925 GGTGATTCGTACACAATTTTTCTTTTC 58.523 33.333 0.00 0.00 39.65 2.29
227 228 9.015577 GTGATTCGTACACAATTTTTCTTTTCA 57.984 29.630 0.00 0.00 38.05 2.69
228 229 9.232082 TGATTCGTACACAATTTTTCTTTTCAG 57.768 29.630 0.00 0.00 0.00 3.02
229 230 9.233232 GATTCGTACACAATTTTTCTTTTCAGT 57.767 29.630 0.00 0.00 0.00 3.41
230 231 8.973835 TTCGTACACAATTTTTCTTTTCAGTT 57.026 26.923 0.00 0.00 0.00 3.16
231 232 8.973835 TCGTACACAATTTTTCTTTTCAGTTT 57.026 26.923 0.00 0.00 0.00 2.66
232 233 9.413048 TCGTACACAATTTTTCTTTTCAGTTTT 57.587 25.926 0.00 0.00 0.00 2.43
236 237 9.283768 ACACAATTTTTCTTTTCAGTTTTTCCT 57.716 25.926 0.00 0.00 0.00 3.36
277 278 8.759481 ACTATATCATCTGACTGAGACTTTGA 57.241 34.615 0.00 0.00 31.75 2.69
278 279 9.365906 ACTATATCATCTGACTGAGACTTTGAT 57.634 33.333 0.00 0.00 34.01 2.57
281 282 9.979578 ATATCATCTGACTGAGACTTTGATTAC 57.020 33.333 0.00 0.00 32.50 1.89
282 283 6.634805 TCATCTGACTGAGACTTTGATTACC 58.365 40.000 0.00 0.00 31.75 2.85
283 284 6.438741 TCATCTGACTGAGACTTTGATTACCT 59.561 38.462 0.00 0.00 31.75 3.08
284 285 6.274157 TCTGACTGAGACTTTGATTACCTC 57.726 41.667 0.00 0.00 0.00 3.85
285 286 6.013379 TCTGACTGAGACTTTGATTACCTCT 58.987 40.000 0.00 0.00 0.00 3.69
286 287 6.151985 TCTGACTGAGACTTTGATTACCTCTC 59.848 42.308 0.00 0.00 0.00 3.20
287 288 5.106118 TGACTGAGACTTTGATTACCTCTCG 60.106 44.000 0.00 0.00 31.67 4.04
288 289 4.158764 ACTGAGACTTTGATTACCTCTCGG 59.841 45.833 0.00 0.00 39.38 4.63
289 290 8.016694 GACTGAGACTTTGATTACCTCTCGGT 62.017 46.154 7.08 7.08 45.95 4.69
290 291 4.158025 TGAGACTTTGATTACCTCTCGGTC 59.842 45.833 0.00 0.00 44.21 4.79
291 292 3.128938 AGACTTTGATTACCTCTCGGTCG 59.871 47.826 0.00 0.00 44.21 4.79
292 293 3.087031 ACTTTGATTACCTCTCGGTCGA 58.913 45.455 0.00 0.00 44.21 4.20
293 294 3.700038 ACTTTGATTACCTCTCGGTCGAT 59.300 43.478 0.00 0.00 44.21 3.59
294 295 4.159879 ACTTTGATTACCTCTCGGTCGATT 59.840 41.667 0.00 0.00 44.21 3.34
295 296 3.710326 TGATTACCTCTCGGTCGATTG 57.290 47.619 0.00 0.00 44.21 2.67
296 297 3.284617 TGATTACCTCTCGGTCGATTGA 58.715 45.455 0.00 0.00 44.21 2.57
297 298 3.315470 TGATTACCTCTCGGTCGATTGAG 59.685 47.826 9.83 9.83 44.21 3.02
298 299 2.704464 TACCTCTCGGTCGATTGAGA 57.296 50.000 15.93 15.93 44.21 3.27
299 300 1.096416 ACCTCTCGGTCGATTGAGAC 58.904 55.000 13.63 0.00 40.27 3.36
310 311 5.110940 GTCGATTGAGACCTAGTCATACC 57.889 47.826 0.00 0.00 34.60 2.73
311 312 4.023021 GTCGATTGAGACCTAGTCATACCC 60.023 50.000 0.00 0.00 34.60 3.69
320 321 8.832735 TGAGACCTAGTCATACCCTTTATTTTT 58.167 33.333 0.00 0.00 34.60 1.94
345 346 8.974060 TTTGAACCAATTAGTATGATACTCCC 57.026 34.615 8.63 0.00 40.14 4.30
348 349 6.591750 ACCAATTAGTATGATACTCCCTCG 57.408 41.667 8.63 0.00 40.14 4.63
351 352 6.350277 CCAATTAGTATGATACTCCCTCGGTC 60.350 46.154 8.63 0.00 40.14 4.79
353 354 2.717515 AGTATGATACTCCCTCGGTCCT 59.282 50.000 0.00 0.00 32.47 3.85
354 355 3.915073 AGTATGATACTCCCTCGGTCCTA 59.085 47.826 0.00 0.00 32.47 2.94
358 359 4.553678 TGATACTCCCTCGGTCCTAAAAT 58.446 43.478 0.00 0.00 0.00 1.82
359 360 5.708544 TGATACTCCCTCGGTCCTAAAATA 58.291 41.667 0.00 0.00 0.00 1.40
363 364 4.405036 ACTCCCTCGGTCCTAAAATAAGTC 59.595 45.833 0.00 0.00 0.00 3.01
367 368 5.221283 CCCTCGGTCCTAAAATAAGTCTCTC 60.221 48.000 0.00 0.00 0.00 3.20
370 371 7.418025 CCTCGGTCCTAAAATAAGTCTCTCAAT 60.418 40.741 0.00 0.00 0.00 2.57
400 401 7.690256 AGCATAAAATTATACTCCCTCCGATT 58.310 34.615 0.00 0.00 0.00 3.34
413 414 7.518188 ACTCCCTCCGATTCATATTATTTGTT 58.482 34.615 0.00 0.00 0.00 2.83
426 427 9.667989 TCATATTATTTGTTGCTCGAATGAATG 57.332 29.630 0.00 6.35 32.85 2.67
489 490 2.158900 ACGAGTAGCATGAATGGAAGGG 60.159 50.000 0.00 0.00 0.00 3.95
491 492 3.432186 CGAGTAGCATGAATGGAAGGGAA 60.432 47.826 0.00 0.00 0.00 3.97
499 500 6.774656 AGCATGAATGGAAGGGAATACTAAAG 59.225 38.462 0.00 0.00 0.00 1.85
501 502 7.255277 GCATGAATGGAAGGGAATACTAAAGTC 60.255 40.741 0.00 0.00 0.00 3.01
508 509 7.166167 GGAAGGGAATACTAAAGTCAAGACAA 58.834 38.462 2.72 0.00 0.00 3.18
520 521 9.787532 CTAAAGTCAAGACAATTGTTTTGAGAA 57.212 29.630 33.10 21.27 45.69 2.87
550 551 9.321562 TGAAGTAGTTAAAAACTTGTTCTCGAT 57.678 29.630 8.10 0.00 42.81 3.59
574 575 1.142060 TCCAAAGGAAAGAAGCGGTCA 59.858 47.619 0.00 0.00 0.00 4.02
581 582 3.260884 AGGAAAGAAGCGGTCAGTTATGA 59.739 43.478 0.00 0.00 0.00 2.15
626 627 3.002656 CCATATGTTGCGCTTGGAAGTAG 59.997 47.826 9.73 0.00 0.00 2.57
627 628 0.804989 ATGTTGCGCTTGGAAGTAGC 59.195 50.000 9.73 0.00 35.29 3.58
628 629 0.533978 TGTTGCGCTTGGAAGTAGCA 60.534 50.000 9.73 7.33 38.55 3.49
655 656 3.972403 ACAAAAACCTATGCAAACGGTC 58.028 40.909 5.54 0.00 0.00 4.79
694 695 6.928979 TCGGAATATCGAGAGGAATATCTC 57.071 41.667 0.00 0.00 41.98 2.75
750 751 4.042398 ACGGATGACGATTCGTTATTGAG 58.958 43.478 16.32 12.86 41.28 3.02
846 882 4.400961 AGGCGCTTCCAGACCAGC 62.401 66.667 7.64 0.00 37.29 4.85
850 886 2.669569 GCTTCCAGACCAGCGCAA 60.670 61.111 11.47 0.00 0.00 4.85
901 937 5.128008 ACTCTTTTTCTCCTCTCCCTTATCG 59.872 44.000 0.00 0.00 0.00 2.92
951 997 1.217882 GCCGATGGAGATAAACCACG 58.782 55.000 0.00 0.00 40.36 4.94
954 1000 1.217882 GATGGAGATAAACCACGCGG 58.782 55.000 12.47 0.00 40.36 6.46
965 1011 3.864686 CACGCGGATTTCCTGGCG 61.865 66.667 12.47 14.67 46.50 5.69
983 1029 2.125512 CGGTAGGCACAGTCCAGC 60.126 66.667 0.00 0.00 0.00 4.85
1005 1051 2.202690 TAGCGAACGACCATGGCG 60.203 61.111 21.83 21.83 0.00 5.69
1043 1092 3.497932 GCTGCTGCCGCTCTTCTG 61.498 66.667 8.89 0.00 36.97 3.02
1419 1486 2.189521 CGGAAGGCGGCCAGTTAT 59.810 61.111 23.09 1.08 0.00 1.89
1826 1917 1.300931 CCGATCGCATCATCCGGTT 60.301 57.895 10.32 0.00 35.83 4.44
2354 2457 4.060038 GACGTTCCGGCCGGAGAA 62.060 66.667 42.70 29.69 46.06 2.87
2555 2658 1.304962 TGGCGGTGAAGGCTAGAGA 60.305 57.895 0.00 0.00 37.59 3.10
2565 2668 5.361285 GGTGAAGGCTAGAGAGAATTGAGTA 59.639 44.000 0.00 0.00 0.00 2.59
2566 2669 6.270064 GTGAAGGCTAGAGAGAATTGAGTAC 58.730 44.000 0.00 0.00 0.00 2.73
2567 2670 5.066634 TGAAGGCTAGAGAGAATTGAGTACG 59.933 44.000 0.00 0.00 0.00 3.67
2568 2671 4.783055 AGGCTAGAGAGAATTGAGTACGA 58.217 43.478 0.00 0.00 0.00 3.43
2569 2672 4.577283 AGGCTAGAGAGAATTGAGTACGAC 59.423 45.833 0.00 0.00 0.00 4.34
2570 2673 4.520078 GCTAGAGAGAATTGAGTACGACG 58.480 47.826 0.00 0.00 0.00 5.12
2571 2674 4.270566 GCTAGAGAGAATTGAGTACGACGA 59.729 45.833 0.00 0.00 0.00 4.20
2572 2675 4.603231 AGAGAGAATTGAGTACGACGAC 57.397 45.455 0.00 0.00 0.00 4.34
2638 2752 2.079925 GCCAGTGAGTGAAAGATGGAC 58.920 52.381 0.00 0.00 0.00 4.02
2677 2793 4.060205 GTTTGTAGGGCGTTTCTACTTGA 58.940 43.478 11.22 0.00 38.25 3.02
2695 2811 4.226846 ACTTGATCTGTTGGTCCATCATCT 59.773 41.667 3.03 0.00 0.00 2.90
2696 2812 5.426509 ACTTGATCTGTTGGTCCATCATCTA 59.573 40.000 3.03 0.00 0.00 1.98
2697 2813 5.541953 TGATCTGTTGGTCCATCATCTAG 57.458 43.478 3.03 0.00 0.00 2.43
2698 2814 5.211201 TGATCTGTTGGTCCATCATCTAGA 58.789 41.667 3.03 0.00 0.00 2.43
2699 2815 5.069648 TGATCTGTTGGTCCATCATCTAGAC 59.930 44.000 3.03 0.00 0.00 2.59
2700 2816 4.614475 TCTGTTGGTCCATCATCTAGACT 58.386 43.478 3.03 0.00 0.00 3.24
2701 2817 5.766590 TCTGTTGGTCCATCATCTAGACTA 58.233 41.667 3.03 0.00 0.00 2.59
2702 2818 5.830457 TCTGTTGGTCCATCATCTAGACTAG 59.170 44.000 2.81 2.81 0.00 2.57
2703 2819 5.766590 TGTTGGTCCATCATCTAGACTAGA 58.233 41.667 14.53 14.53 39.50 2.43
2704 2820 6.194967 TGTTGGTCCATCATCTAGACTAGAA 58.805 40.000 16.04 1.34 38.50 2.10
2705 2821 6.322456 TGTTGGTCCATCATCTAGACTAGAAG 59.678 42.308 16.04 11.93 38.50 2.85
2706 2822 5.389520 TGGTCCATCATCTAGACTAGAAGG 58.610 45.833 16.04 14.45 38.50 3.46
2707 2823 4.770010 GGTCCATCATCTAGACTAGAAGGG 59.230 50.000 16.04 11.62 38.50 3.95
2708 2824 5.390387 GTCCATCATCTAGACTAGAAGGGT 58.610 45.833 16.04 5.50 38.50 4.34
2709 2825 5.836358 GTCCATCATCTAGACTAGAAGGGTT 59.164 44.000 16.04 0.00 38.50 4.11
2710 2826 5.835819 TCCATCATCTAGACTAGAAGGGTTG 59.164 44.000 16.04 9.55 38.50 3.77
2711 2827 5.011533 CCATCATCTAGACTAGAAGGGTTGG 59.988 48.000 16.04 16.44 38.50 3.77
2712 2828 4.547671 TCATCTAGACTAGAAGGGTTGGG 58.452 47.826 16.04 0.34 38.50 4.12
2713 2829 4.016479 TCATCTAGACTAGAAGGGTTGGGT 60.016 45.833 16.04 0.00 38.50 4.51
2714 2830 3.709587 TCTAGACTAGAAGGGTTGGGTG 58.290 50.000 9.85 0.00 0.00 4.61
2715 2831 0.984995 AGACTAGAAGGGTTGGGTGC 59.015 55.000 0.00 0.00 0.00 5.01
2716 2832 0.391263 GACTAGAAGGGTTGGGTGCG 60.391 60.000 0.00 0.00 0.00 5.34
2717 2833 1.745489 CTAGAAGGGTTGGGTGCGC 60.745 63.158 0.00 0.00 0.00 6.09
2718 2834 2.185310 CTAGAAGGGTTGGGTGCGCT 62.185 60.000 9.73 0.00 0.00 5.92
2719 2835 1.774894 TAGAAGGGTTGGGTGCGCTT 61.775 55.000 9.73 0.00 40.94 4.68
2720 2836 2.123468 AAGGGTTGGGTGCGCTTT 60.123 55.556 9.73 0.00 35.98 3.51
2721 2837 2.420466 GAAGGGTTGGGTGCGCTTTG 62.420 60.000 9.73 0.00 38.86 2.77
2722 2838 4.662961 GGGTTGGGTGCGCTTTGC 62.663 66.667 9.73 0.00 46.70 3.68
2723 2839 3.605664 GGTTGGGTGCGCTTTGCT 61.606 61.111 9.73 0.00 46.63 3.91
2724 2840 2.355009 GTTGGGTGCGCTTTGCTG 60.355 61.111 9.73 0.00 46.63 4.41
2725 2841 4.283403 TTGGGTGCGCTTTGCTGC 62.283 61.111 9.73 0.00 46.63 5.25
2733 2849 4.629115 GCTTTGCTGCGCCGTTGT 62.629 61.111 4.18 0.00 0.00 3.32
2734 2850 2.026014 CTTTGCTGCGCCGTTGTT 59.974 55.556 4.18 0.00 0.00 2.83
2735 2851 1.281353 CTTTGCTGCGCCGTTGTTA 59.719 52.632 4.18 0.00 0.00 2.41
2736 2852 0.109781 CTTTGCTGCGCCGTTGTTAT 60.110 50.000 4.18 0.00 0.00 1.89
2737 2853 0.312416 TTTGCTGCGCCGTTGTTATT 59.688 45.000 4.18 0.00 0.00 1.40
2738 2854 0.386605 TTGCTGCGCCGTTGTTATTG 60.387 50.000 4.18 0.00 0.00 1.90
2739 2855 1.209127 GCTGCGCCGTTGTTATTGT 59.791 52.632 4.18 0.00 0.00 2.71
2740 2856 0.386731 GCTGCGCCGTTGTTATTGTT 60.387 50.000 4.18 0.00 0.00 2.83
2741 2857 1.135916 GCTGCGCCGTTGTTATTGTTA 60.136 47.619 4.18 0.00 0.00 2.41
2742 2858 2.769376 CTGCGCCGTTGTTATTGTTAG 58.231 47.619 4.18 0.00 0.00 2.34
2743 2859 1.465387 TGCGCCGTTGTTATTGTTAGG 59.535 47.619 4.18 0.00 0.00 2.69
2744 2860 1.733360 GCGCCGTTGTTATTGTTAGGA 59.267 47.619 0.00 0.00 0.00 2.94
2745 2861 2.353579 GCGCCGTTGTTATTGTTAGGAT 59.646 45.455 0.00 0.00 0.00 3.24
2746 2862 3.181504 GCGCCGTTGTTATTGTTAGGATT 60.182 43.478 0.00 0.00 0.00 3.01
2848 2964 4.292041 CCCTCATATTGGGTGATTATGGGA 59.708 45.833 0.00 0.00 39.82 4.37
3137 3255 3.772572 TGATAAAGATGGGACGTCAAGGA 59.227 43.478 18.91 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.398692 TTCAGGGACTTGGTTGCAAC 58.601 50.000 21.59 21.59 34.60 4.17
5 6 2.151502 TTTCAGGGACTTGGTTGCAA 57.848 45.000 0.00 0.00 34.60 4.08
7 8 5.885912 TCTATTATTTCAGGGACTTGGTTGC 59.114 40.000 0.00 0.00 34.60 4.17
8 9 7.469181 GCATCTATTATTTCAGGGACTTGGTTG 60.469 40.741 0.00 0.00 34.60 3.77
9 10 6.547510 GCATCTATTATTTCAGGGACTTGGTT 59.452 38.462 0.00 0.00 34.60 3.67
10 11 6.064717 GCATCTATTATTTCAGGGACTTGGT 58.935 40.000 0.00 0.00 34.60 3.67
11 12 6.302269 AGCATCTATTATTTCAGGGACTTGG 58.698 40.000 0.00 0.00 34.60 3.61
12 13 8.908786 TTAGCATCTATTATTTCAGGGACTTG 57.091 34.615 0.00 0.00 34.60 3.16
13 14 8.938883 TCTTAGCATCTATTATTTCAGGGACTT 58.061 33.333 0.00 0.00 34.60 3.01
14 15 8.497910 TCTTAGCATCTATTATTTCAGGGACT 57.502 34.615 0.00 0.00 43.88 3.85
15 16 9.732130 ATTCTTAGCATCTATTATTTCAGGGAC 57.268 33.333 0.00 0.00 0.00 4.46
26 27 8.037758 CCGGAGTGAATATTCTTAGCATCTATT 58.962 37.037 16.24 0.00 0.00 1.73
27 28 7.397476 TCCGGAGTGAATATTCTTAGCATCTAT 59.603 37.037 16.24 0.00 0.00 1.98
28 29 6.719829 TCCGGAGTGAATATTCTTAGCATCTA 59.280 38.462 16.24 0.00 0.00 1.98
29 30 5.540337 TCCGGAGTGAATATTCTTAGCATCT 59.460 40.000 16.24 4.09 0.00 2.90
30 31 5.784177 TCCGGAGTGAATATTCTTAGCATC 58.216 41.667 16.24 5.59 0.00 3.91
31 32 5.808366 TCCGGAGTGAATATTCTTAGCAT 57.192 39.130 16.24 0.00 0.00 3.79
32 33 5.808366 ATCCGGAGTGAATATTCTTAGCA 57.192 39.130 11.34 0.00 0.00 3.49
33 34 5.639931 GGAATCCGGAGTGAATATTCTTAGC 59.360 44.000 10.26 4.78 0.00 3.09
34 35 6.759272 TGGAATCCGGAGTGAATATTCTTAG 58.241 40.000 10.26 4.08 0.00 2.18
35 36 6.553476 TCTGGAATCCGGAGTGAATATTCTTA 59.447 38.462 10.26 0.00 33.41 2.10
36 37 5.366768 TCTGGAATCCGGAGTGAATATTCTT 59.633 40.000 10.26 5.03 33.41 2.52
37 38 4.901849 TCTGGAATCCGGAGTGAATATTCT 59.098 41.667 10.26 0.00 33.41 2.40
38 39 5.215252 TCTGGAATCCGGAGTGAATATTC 57.785 43.478 10.26 6.11 33.41 1.75
39 40 5.615289 CTTCTGGAATCCGGAGTGAATATT 58.385 41.667 10.26 0.00 40.34 1.28
40 41 4.503991 GCTTCTGGAATCCGGAGTGAATAT 60.504 45.833 10.26 0.00 40.34 1.28
41 42 3.181465 GCTTCTGGAATCCGGAGTGAATA 60.181 47.826 10.26 0.00 40.34 1.75
42 43 2.420687 GCTTCTGGAATCCGGAGTGAAT 60.421 50.000 10.26 0.00 40.34 2.57
43 44 1.066143 GCTTCTGGAATCCGGAGTGAA 60.066 52.381 10.26 6.02 40.34 3.18
44 45 0.537188 GCTTCTGGAATCCGGAGTGA 59.463 55.000 10.26 0.00 40.34 3.41
45 46 0.462759 GGCTTCTGGAATCCGGAGTG 60.463 60.000 10.26 9.45 40.34 3.51
46 47 1.627297 GGGCTTCTGGAATCCGGAGT 61.627 60.000 11.34 7.44 40.34 3.85
47 48 1.147153 GGGCTTCTGGAATCCGGAG 59.853 63.158 11.34 7.01 40.34 4.63
48 49 2.731571 CGGGCTTCTGGAATCCGGA 61.732 63.158 6.61 6.61 37.09 5.14
49 50 2.203070 CGGGCTTCTGGAATCCGG 60.203 66.667 0.56 0.56 35.14 5.14
50 51 2.897350 GCGGGCTTCTGGAATCCG 60.897 66.667 15.57 15.57 38.85 4.18
51 52 1.378514 TTGCGGGCTTCTGGAATCC 60.379 57.895 0.00 0.00 0.00 3.01
52 53 0.392998 TCTTGCGGGCTTCTGGAATC 60.393 55.000 0.00 0.00 0.00 2.52
53 54 0.038166 TTCTTGCGGGCTTCTGGAAT 59.962 50.000 0.00 0.00 0.00 3.01
54 55 0.038166 ATTCTTGCGGGCTTCTGGAA 59.962 50.000 0.00 0.00 0.00 3.53
55 56 0.908910 TATTCTTGCGGGCTTCTGGA 59.091 50.000 0.00 0.00 0.00 3.86
56 57 1.972872 ATATTCTTGCGGGCTTCTGG 58.027 50.000 0.00 0.00 0.00 3.86
57 58 3.378112 TGAAATATTCTTGCGGGCTTCTG 59.622 43.478 0.00 0.00 0.00 3.02
58 59 3.620488 TGAAATATTCTTGCGGGCTTCT 58.380 40.909 0.00 0.00 0.00 2.85
59 60 4.540824 GATGAAATATTCTTGCGGGCTTC 58.459 43.478 0.00 0.00 0.00 3.86
60 61 3.319122 GGATGAAATATTCTTGCGGGCTT 59.681 43.478 0.00 0.00 0.00 4.35
61 62 2.887152 GGATGAAATATTCTTGCGGGCT 59.113 45.455 0.00 0.00 0.00 5.19
62 63 2.887152 AGGATGAAATATTCTTGCGGGC 59.113 45.455 0.00 0.00 31.81 6.13
63 64 5.163519 ACAAAGGATGAAATATTCTTGCGGG 60.164 40.000 0.00 0.00 31.81 6.13
64 65 5.894807 ACAAAGGATGAAATATTCTTGCGG 58.105 37.500 0.00 0.00 31.81 5.69
65 66 6.789262 AGACAAAGGATGAAATATTCTTGCG 58.211 36.000 0.00 0.00 31.81 4.85
66 67 7.199078 GGAGACAAAGGATGAAATATTCTTGC 58.801 38.462 0.00 0.00 0.00 4.01
67 68 7.201857 GGGGAGACAAAGGATGAAATATTCTTG 60.202 40.741 0.00 0.00 0.00 3.02
68 69 6.836007 GGGGAGACAAAGGATGAAATATTCTT 59.164 38.462 0.00 0.00 0.00 2.52
69 70 6.368805 GGGGAGACAAAGGATGAAATATTCT 58.631 40.000 0.00 0.00 0.00 2.40
70 71 5.239525 CGGGGAGACAAAGGATGAAATATTC 59.760 44.000 0.00 0.00 0.00 1.75
71 72 5.133221 CGGGGAGACAAAGGATGAAATATT 58.867 41.667 0.00 0.00 0.00 1.28
72 73 4.446311 CCGGGGAGACAAAGGATGAAATAT 60.446 45.833 0.00 0.00 0.00 1.28
73 74 3.118038 CCGGGGAGACAAAGGATGAAATA 60.118 47.826 0.00 0.00 0.00 1.40
74 75 2.357154 CCGGGGAGACAAAGGATGAAAT 60.357 50.000 0.00 0.00 0.00 2.17
75 76 1.004277 CCGGGGAGACAAAGGATGAAA 59.996 52.381 0.00 0.00 0.00 2.69
76 77 0.618458 CCGGGGAGACAAAGGATGAA 59.382 55.000 0.00 0.00 0.00 2.57
77 78 0.546747 ACCGGGGAGACAAAGGATGA 60.547 55.000 6.32 0.00 0.00 2.92
78 79 0.328258 AACCGGGGAGACAAAGGATG 59.672 55.000 6.32 0.00 0.00 3.51
79 80 1.961133 TAACCGGGGAGACAAAGGAT 58.039 50.000 6.32 0.00 0.00 3.24
80 81 1.557832 CATAACCGGGGAGACAAAGGA 59.442 52.381 6.32 0.00 0.00 3.36
81 82 1.408266 CCATAACCGGGGAGACAAAGG 60.408 57.143 6.32 0.00 0.00 3.11
82 83 1.280998 ACCATAACCGGGGAGACAAAG 59.719 52.381 6.32 0.00 0.00 2.77
83 84 1.364269 ACCATAACCGGGGAGACAAA 58.636 50.000 6.32 0.00 0.00 2.83
84 85 1.279846 GAACCATAACCGGGGAGACAA 59.720 52.381 6.32 0.00 0.00 3.18
85 86 0.906775 GAACCATAACCGGGGAGACA 59.093 55.000 6.32 0.00 0.00 3.41
86 87 0.906775 TGAACCATAACCGGGGAGAC 59.093 55.000 6.32 0.00 0.00 3.36
87 88 1.488812 CATGAACCATAACCGGGGAGA 59.511 52.381 6.32 0.00 0.00 3.71
88 89 1.211949 ACATGAACCATAACCGGGGAG 59.788 52.381 6.32 0.00 0.00 4.30
89 90 1.065053 CACATGAACCATAACCGGGGA 60.065 52.381 6.32 0.00 0.00 4.81
90 91 1.388547 CACATGAACCATAACCGGGG 58.611 55.000 6.32 0.00 0.00 5.73
91 92 0.738389 GCACATGAACCATAACCGGG 59.262 55.000 6.32 0.00 0.00 5.73
92 93 1.458398 TGCACATGAACCATAACCGG 58.542 50.000 0.00 0.00 0.00 5.28
93 94 2.033299 GGATGCACATGAACCATAACCG 59.967 50.000 0.00 0.00 0.00 4.44
94 95 2.033299 CGGATGCACATGAACCATAACC 59.967 50.000 0.00 0.00 0.00 2.85
95 96 2.942376 TCGGATGCACATGAACCATAAC 59.058 45.455 0.00 0.00 0.00 1.89
96 97 3.274095 TCGGATGCACATGAACCATAA 57.726 42.857 0.00 0.00 0.00 1.90
97 98 2.998316 TCGGATGCACATGAACCATA 57.002 45.000 0.00 0.00 0.00 2.74
98 99 2.353357 ATCGGATGCACATGAACCAT 57.647 45.000 0.00 0.00 0.00 3.55
99 100 2.127271 AATCGGATGCACATGAACCA 57.873 45.000 0.00 0.00 0.00 3.67
100 101 3.206150 ACTAATCGGATGCACATGAACC 58.794 45.455 0.00 0.00 0.00 3.62
101 102 4.211374 GGTACTAATCGGATGCACATGAAC 59.789 45.833 0.00 0.00 0.00 3.18
102 103 4.141824 TGGTACTAATCGGATGCACATGAA 60.142 41.667 0.00 0.00 0.00 2.57
103 104 3.386402 TGGTACTAATCGGATGCACATGA 59.614 43.478 0.00 0.00 0.00 3.07
104 105 3.727726 TGGTACTAATCGGATGCACATG 58.272 45.455 0.00 0.00 0.00 3.21
105 106 4.415881 TTGGTACTAATCGGATGCACAT 57.584 40.909 0.00 0.00 0.00 3.21
106 107 3.897141 TTGGTACTAATCGGATGCACA 57.103 42.857 0.00 0.00 0.00 4.57
107 108 5.539048 ACTATTGGTACTAATCGGATGCAC 58.461 41.667 7.84 0.00 0.00 4.57
108 109 5.801531 ACTATTGGTACTAATCGGATGCA 57.198 39.130 7.84 0.00 0.00 3.96
109 110 7.012044 ACAAAACTATTGGTACTAATCGGATGC 59.988 37.037 7.84 0.00 0.00 3.91
110 111 8.433421 ACAAAACTATTGGTACTAATCGGATG 57.567 34.615 7.84 5.97 0.00 3.51
112 113 9.941325 TTAACAAAACTATTGGTACTAATCGGA 57.059 29.630 7.84 0.00 0.00 4.55
119 120 8.967664 TGTGACTTAACAAAACTATTGGTACT 57.032 30.769 0.00 0.00 0.00 2.73
120 121 8.833493 ACTGTGACTTAACAAAACTATTGGTAC 58.167 33.333 0.00 0.00 0.00 3.34
121 122 8.967664 ACTGTGACTTAACAAAACTATTGGTA 57.032 30.769 0.00 0.00 0.00 3.25
122 123 7.254658 CGACTGTGACTTAACAAAACTATTGGT 60.255 37.037 0.00 0.00 0.00 3.67
123 124 7.042321 TCGACTGTGACTTAACAAAACTATTGG 60.042 37.037 0.00 0.00 0.00 3.16
124 125 7.792508 GTCGACTGTGACTTAACAAAACTATTG 59.207 37.037 8.70 0.00 35.95 1.90
125 126 7.709613 AGTCGACTGTGACTTAACAAAACTATT 59.290 33.333 19.30 0.00 46.85 1.73
126 127 7.169308 CAGTCGACTGTGACTTAACAAAACTAT 59.831 37.037 32.77 0.00 46.85 2.12
127 128 6.474427 CAGTCGACTGTGACTTAACAAAACTA 59.526 38.462 32.77 0.00 46.85 2.24
128 129 5.291128 CAGTCGACTGTGACTTAACAAAACT 59.709 40.000 32.77 0.00 46.85 2.66
129 130 5.290158 TCAGTCGACTGTGACTTAACAAAAC 59.710 40.000 37.21 0.00 46.85 2.43
130 131 5.412640 TCAGTCGACTGTGACTTAACAAAA 58.587 37.500 37.21 16.36 46.85 2.44
131 132 5.001237 TCAGTCGACTGTGACTTAACAAA 57.999 39.130 37.21 16.55 46.85 2.83
132 133 4.642445 TCAGTCGACTGTGACTTAACAA 57.358 40.909 37.21 17.03 46.85 2.83
133 134 4.848562 ATCAGTCGACTGTGACTTAACA 57.151 40.909 37.21 20.15 46.85 2.41
134 135 5.940595 AGTATCAGTCGACTGTGACTTAAC 58.059 41.667 37.21 25.02 46.85 2.01
135 136 6.570672 AAGTATCAGTCGACTGTGACTTAA 57.429 37.500 37.73 25.14 46.85 1.85
136 137 5.163884 CGAAGTATCAGTCGACTGTGACTTA 60.164 44.000 38.11 26.05 46.85 2.24
137 138 4.378563 CGAAGTATCAGTCGACTGTGACTT 60.379 45.833 38.40 38.40 46.85 3.01
138 139 5.334870 ACGAAGTATCAGTCGACTGTGACT 61.335 45.833 37.21 33.97 45.82 3.41
139 140 3.120269 ACGAAGTATCAGTCGACTGTGAC 60.120 47.826 37.21 32.72 41.94 3.67
140 141 3.072211 ACGAAGTATCAGTCGACTGTGA 58.928 45.455 37.21 25.95 41.94 3.58
141 142 3.473093 ACGAAGTATCAGTCGACTGTG 57.527 47.619 37.21 20.13 41.94 3.66
142 143 5.123502 ACATAACGAAGTATCAGTCGACTGT 59.876 40.000 37.21 27.74 45.00 3.55
143 144 5.570344 ACATAACGAAGTATCAGTCGACTG 58.430 41.667 34.76 34.76 45.00 3.51
144 145 5.585445 AGACATAACGAAGTATCAGTCGACT 59.415 40.000 13.58 13.58 45.00 4.18
145 146 5.808403 AGACATAACGAAGTATCAGTCGAC 58.192 41.667 7.70 7.70 45.00 4.20
146 147 5.583457 TGAGACATAACGAAGTATCAGTCGA 59.417 40.000 0.00 0.00 45.00 4.20
147 148 5.807344 TGAGACATAACGAAGTATCAGTCG 58.193 41.667 0.00 0.00 45.00 4.18
151 152 5.583457 TCGACTGAGACATAACGAAGTATCA 59.417 40.000 0.00 0.00 45.00 2.15
152 153 6.045698 TCGACTGAGACATAACGAAGTATC 57.954 41.667 0.00 0.00 45.00 2.24
153 154 6.621316 ATCGACTGAGACATAACGAAGTAT 57.379 37.500 0.00 0.00 45.00 2.12
154 155 6.760298 AGTATCGACTGAGACATAACGAAGTA 59.240 38.462 0.00 0.00 38.31 2.24
155 156 5.585445 AGTATCGACTGAGACATAACGAAGT 59.415 40.000 0.00 0.00 40.30 3.01
156 157 6.050454 AGTATCGACTGAGACATAACGAAG 57.950 41.667 0.00 0.00 38.81 3.79
157 158 7.725818 ATAGTATCGACTGAGACATAACGAA 57.274 36.000 0.00 0.00 38.81 3.85
158 159 8.999220 ATATAGTATCGACTGAGACATAACGA 57.001 34.615 0.00 0.00 38.81 3.85
159 160 9.691795 GAATATAGTATCGACTGAGACATAACG 57.308 37.037 0.00 0.00 38.81 3.18
182 183 7.703621 CGAATCACCATGCAAGATTAAAAGAAT 59.296 33.333 0.00 0.00 32.51 2.40
183 184 7.028962 CGAATCACCATGCAAGATTAAAAGAA 58.971 34.615 0.00 0.00 32.51 2.52
184 185 6.150976 ACGAATCACCATGCAAGATTAAAAGA 59.849 34.615 0.00 0.00 32.51 2.52
185 186 6.324819 ACGAATCACCATGCAAGATTAAAAG 58.675 36.000 0.00 0.00 32.51 2.27
186 187 6.266168 ACGAATCACCATGCAAGATTAAAA 57.734 33.333 0.00 0.00 32.51 1.52
187 188 5.895636 ACGAATCACCATGCAAGATTAAA 57.104 34.783 0.00 0.00 32.51 1.52
188 189 5.877564 TGTACGAATCACCATGCAAGATTAA 59.122 36.000 0.00 0.00 32.51 1.40
189 190 5.293324 GTGTACGAATCACCATGCAAGATTA 59.707 40.000 0.00 0.00 32.51 1.75
190 191 4.094887 GTGTACGAATCACCATGCAAGATT 59.905 41.667 0.00 0.00 34.88 2.40
191 192 3.623060 GTGTACGAATCACCATGCAAGAT 59.377 43.478 0.00 0.00 0.00 2.40
192 193 3.000041 GTGTACGAATCACCATGCAAGA 59.000 45.455 0.00 0.00 0.00 3.02
193 194 2.741517 TGTGTACGAATCACCATGCAAG 59.258 45.455 0.00 0.00 35.25 4.01
194 195 2.772287 TGTGTACGAATCACCATGCAA 58.228 42.857 0.00 0.00 35.25 4.08
195 196 2.464157 TGTGTACGAATCACCATGCA 57.536 45.000 0.00 0.00 35.25 3.96
196 197 4.355543 AATTGTGTACGAATCACCATGC 57.644 40.909 0.00 0.00 35.25 4.06
197 198 7.083858 AGAAAAATTGTGTACGAATCACCATG 58.916 34.615 0.00 0.00 35.25 3.66
198 199 7.214467 AGAAAAATTGTGTACGAATCACCAT 57.786 32.000 0.00 0.00 35.25 3.55
199 200 6.627395 AGAAAAATTGTGTACGAATCACCA 57.373 33.333 0.00 0.00 35.25 4.17
200 201 7.924103 AAAGAAAAATTGTGTACGAATCACC 57.076 32.000 0.00 0.00 35.25 4.02
201 202 9.015577 TGAAAAGAAAAATTGTGTACGAATCAC 57.984 29.630 0.00 0.00 36.48 3.06
202 203 9.232082 CTGAAAAGAAAAATTGTGTACGAATCA 57.768 29.630 0.00 0.00 0.00 2.57
203 204 9.233232 ACTGAAAAGAAAAATTGTGTACGAATC 57.767 29.630 0.00 0.00 0.00 2.52
204 205 9.581099 AACTGAAAAGAAAAATTGTGTACGAAT 57.419 25.926 0.00 0.00 0.00 3.34
205 206 8.973835 AACTGAAAAGAAAAATTGTGTACGAA 57.026 26.923 0.00 0.00 0.00 3.85
206 207 8.973835 AAACTGAAAAGAAAAATTGTGTACGA 57.026 26.923 0.00 0.00 0.00 3.43
210 211 9.283768 AGGAAAAACTGAAAAGAAAAATTGTGT 57.716 25.926 0.00 0.00 0.00 3.72
251 252 9.853177 TCAAAGTCTCAGTCAGATGATATAGTA 57.147 33.333 0.00 0.00 32.08 1.82
252 253 8.759481 TCAAAGTCTCAGTCAGATGATATAGT 57.241 34.615 0.00 0.00 32.08 2.12
255 256 9.979578 GTAATCAAAGTCTCAGTCAGATGATAT 57.020 33.333 0.00 0.00 30.20 1.63
256 257 8.417106 GGTAATCAAAGTCTCAGTCAGATGATA 58.583 37.037 0.00 0.00 30.20 2.15
257 258 7.125507 AGGTAATCAAAGTCTCAGTCAGATGAT 59.874 37.037 0.00 0.00 32.02 2.45
258 259 6.438741 AGGTAATCAAAGTCTCAGTCAGATGA 59.561 38.462 0.00 0.00 32.08 2.92
259 260 6.638610 AGGTAATCAAAGTCTCAGTCAGATG 58.361 40.000 0.00 0.00 32.08 2.90
260 261 6.667414 AGAGGTAATCAAAGTCTCAGTCAGAT 59.333 38.462 0.00 0.00 32.08 2.90
261 262 6.013379 AGAGGTAATCAAAGTCTCAGTCAGA 58.987 40.000 0.00 0.00 0.00 3.27
262 263 6.279513 AGAGGTAATCAAAGTCTCAGTCAG 57.720 41.667 0.00 0.00 0.00 3.51
263 264 5.106118 CGAGAGGTAATCAAAGTCTCAGTCA 60.106 44.000 0.00 0.00 34.50 3.41
264 265 5.336744 CGAGAGGTAATCAAAGTCTCAGTC 58.663 45.833 0.00 0.00 34.50 3.51
265 266 5.317733 CGAGAGGTAATCAAAGTCTCAGT 57.682 43.478 0.00 0.00 34.50 3.41
282 283 3.928343 GGTCTCAATCGACCGAGAG 57.072 57.895 14.29 7.25 43.56 3.20
288 289 4.023021 GGGTATGACTAGGTCTCAATCGAC 60.023 50.000 0.00 0.00 33.15 4.20
289 290 4.141228 AGGGTATGACTAGGTCTCAATCGA 60.141 45.833 0.00 0.00 33.15 3.59
290 291 4.145807 AGGGTATGACTAGGTCTCAATCG 58.854 47.826 0.00 0.00 33.15 3.34
291 292 6.487299 AAAGGGTATGACTAGGTCTCAATC 57.513 41.667 0.00 0.00 33.15 2.67
292 293 8.568617 AATAAAGGGTATGACTAGGTCTCAAT 57.431 34.615 0.00 0.00 33.15 2.57
293 294 7.989947 AATAAAGGGTATGACTAGGTCTCAA 57.010 36.000 0.00 0.00 33.15 3.02
294 295 7.989947 AAATAAAGGGTATGACTAGGTCTCA 57.010 36.000 0.00 0.00 33.15 3.27
320 321 8.778059 AGGGAGTATCATACTAATTGGTTCAAA 58.222 33.333 0.00 0.00 39.59 2.69
338 339 6.141790 ACTTATTTTAGGACCGAGGGAGTAT 58.858 40.000 0.00 0.00 0.00 2.12
344 345 5.360144 TGAGAGACTTATTTTAGGACCGAGG 59.640 44.000 0.00 0.00 0.00 4.63
345 346 6.452494 TGAGAGACTTATTTTAGGACCGAG 57.548 41.667 0.00 0.00 0.00 4.63
348 349 8.794335 AACATTGAGAGACTTATTTTAGGACC 57.206 34.615 0.00 0.00 0.00 4.46
370 371 9.569122 GGAGGGAGTATAATTTTATGCTAAACA 57.431 33.333 1.57 0.00 36.43 2.83
377 378 9.672673 ATGAATCGGAGGGAGTATAATTTTATG 57.327 33.333 0.00 0.00 0.00 1.90
392 393 7.206981 AGCAACAAATAATATGAATCGGAGG 57.793 36.000 0.00 0.00 0.00 4.30
400 401 9.667989 CATTCATTCGAGCAACAAATAATATGA 57.332 29.630 0.00 0.00 0.00 2.15
413 414 9.710900 ATACATCTAAATACATTCATTCGAGCA 57.289 29.630 0.00 0.00 0.00 4.26
466 467 3.310774 CCTTCCATTCATGCTACTCGTTG 59.689 47.826 0.00 0.00 0.00 4.10
467 468 3.535561 CCTTCCATTCATGCTACTCGTT 58.464 45.455 0.00 0.00 0.00 3.85
470 471 3.845781 TCCCTTCCATTCATGCTACTC 57.154 47.619 0.00 0.00 0.00 2.59
475 476 6.547510 ACTTTAGTATTCCCTTCCATTCATGC 59.452 38.462 0.00 0.00 0.00 4.06
476 477 7.775093 TGACTTTAGTATTCCCTTCCATTCATG 59.225 37.037 0.00 0.00 0.00 3.07
499 500 6.795399 TCCTTCTCAAAACAATTGTCTTGAC 58.205 36.000 20.75 0.00 0.00 3.18
501 502 7.428020 TCATCCTTCTCAAAACAATTGTCTTG 58.572 34.615 16.93 16.93 0.00 3.02
508 509 8.697507 AACTACTTCATCCTTCTCAAAACAAT 57.302 30.769 0.00 0.00 0.00 2.71
520 521 9.628500 AGAACAAGTTTTTAACTACTTCATCCT 57.372 29.630 0.00 0.00 41.91 3.24
550 551 2.360801 CCGCTTCTTTCCTTTGGAAACA 59.639 45.455 7.60 0.00 45.42 2.83
574 575 3.118956 CCGGAGCTCTGAAGTTCATAACT 60.119 47.826 24.60 3.79 45.46 2.24
581 582 2.294078 CCCCCGGAGCTCTGAAGTT 61.294 63.158 24.60 0.00 0.00 2.66
604 605 1.745087 ACTTCCAAGCGCAACATATGG 59.255 47.619 11.47 8.07 0.00 2.74
626 627 2.724174 GCATAGGTTTTTGTTGACGTGC 59.276 45.455 0.00 0.00 0.00 5.34
627 628 3.958704 TGCATAGGTTTTTGTTGACGTG 58.041 40.909 0.00 0.00 0.00 4.49
628 629 4.640789 TTGCATAGGTTTTTGTTGACGT 57.359 36.364 0.00 0.00 0.00 4.34
655 656 2.905075 TCCGAGTTTATGCTCCACATG 58.095 47.619 0.00 0.00 40.06 3.21
694 695 2.967076 CACATTCGGCGGATCGGG 60.967 66.667 7.21 0.00 0.00 5.14
720 721 1.421410 ATCGTCATCCGTTTGCGCTC 61.421 55.000 9.73 0.00 37.94 5.03
869 905 0.238553 GAGAAAAAGAGTGTGGCGGC 59.761 55.000 0.00 0.00 0.00 6.53
901 937 1.213799 GGTGGACGTACGGGAAGAC 59.786 63.158 21.06 8.25 0.00 3.01
954 1000 1.887707 CCTACCGCGCCAGGAAATC 60.888 63.158 16.81 0.00 33.42 2.17
965 1011 2.125512 CTGGACTGTGCCTACCGC 60.126 66.667 0.00 0.00 38.31 5.68
994 1040 4.141965 TGCGATCGCCATGGTCGT 62.142 61.111 35.12 12.08 41.09 4.34
1005 1051 2.437359 AAGGCTGCCAGTGCGATC 60.437 61.111 22.65 0.00 41.78 3.69
1173 1240 1.064240 TCGGTGAGCCAGTCCAGTATA 60.064 52.381 0.00 0.00 34.09 1.47
1416 1483 1.724623 GAGCGCGTGTTGAACTCATAA 59.275 47.619 8.43 0.00 0.00 1.90
1419 1486 2.300066 CGAGCGCGTGTTGAACTCA 61.300 57.895 8.43 0.00 0.00 3.41
1870 1961 0.948623 CTCACCATGAACCGCGACAA 60.949 55.000 8.23 0.00 0.00 3.18
2555 2658 4.761235 TCTTGTCGTCGTACTCAATTCT 57.239 40.909 0.00 0.00 0.00 2.40
2565 2668 0.594602 TTCCGTCATCTTGTCGTCGT 59.405 50.000 0.00 0.00 0.00 4.34
2566 2669 1.693467 TTTCCGTCATCTTGTCGTCG 58.307 50.000 0.00 0.00 0.00 5.12
2567 2670 3.927142 AGATTTTCCGTCATCTTGTCGTC 59.073 43.478 0.00 0.00 0.00 4.20
2568 2671 3.679980 CAGATTTTCCGTCATCTTGTCGT 59.320 43.478 0.00 0.00 0.00 4.34
2569 2672 3.484229 GCAGATTTTCCGTCATCTTGTCG 60.484 47.826 0.00 0.00 0.00 4.35
2570 2673 3.686726 AGCAGATTTTCCGTCATCTTGTC 59.313 43.478 0.00 0.00 0.00 3.18
2571 2674 3.679389 AGCAGATTTTCCGTCATCTTGT 58.321 40.909 0.00 0.00 0.00 3.16
2572 2675 4.691860 AAGCAGATTTTCCGTCATCTTG 57.308 40.909 0.00 0.00 0.00 3.02
2659 2773 4.113354 CAGATCAAGTAGAAACGCCCTAC 58.887 47.826 0.00 0.00 37.38 3.18
2677 2793 5.215069 AGTCTAGATGATGGACCAACAGAT 58.785 41.667 10.49 3.98 40.15 2.90
2695 2811 2.185387 GCACCCAACCCTTCTAGTCTA 58.815 52.381 0.00 0.00 0.00 2.59
2696 2812 0.984995 GCACCCAACCCTTCTAGTCT 59.015 55.000 0.00 0.00 0.00 3.24
2697 2813 0.391263 CGCACCCAACCCTTCTAGTC 60.391 60.000 0.00 0.00 0.00 2.59
2698 2814 1.677552 CGCACCCAACCCTTCTAGT 59.322 57.895 0.00 0.00 0.00 2.57
2699 2815 1.745489 GCGCACCCAACCCTTCTAG 60.745 63.158 0.30 0.00 0.00 2.43
2700 2816 1.774894 AAGCGCACCCAACCCTTCTA 61.775 55.000 11.47 0.00 0.00 2.10
2701 2817 2.640581 AAAGCGCACCCAACCCTTCT 62.641 55.000 11.47 0.00 0.00 2.85
2702 2818 2.200337 AAAGCGCACCCAACCCTTC 61.200 57.895 11.47 0.00 0.00 3.46
2703 2819 2.123468 AAAGCGCACCCAACCCTT 60.123 55.556 11.47 0.00 0.00 3.95
2704 2820 2.912025 CAAAGCGCACCCAACCCT 60.912 61.111 11.47 0.00 0.00 4.34
2705 2821 4.662961 GCAAAGCGCACCCAACCC 62.663 66.667 11.47 0.00 41.79 4.11
2706 2822 3.605664 AGCAAAGCGCACCCAACC 61.606 61.111 11.47 0.00 46.13 3.77
2707 2823 2.355009 CAGCAAAGCGCACCCAAC 60.355 61.111 11.47 0.00 46.13 3.77
2708 2824 4.283403 GCAGCAAAGCGCACCCAA 62.283 61.111 11.47 0.00 46.13 4.12
2722 2838 2.475519 CCTAACAATAACAACGGCGCAG 60.476 50.000 10.83 8.25 0.00 5.18
2723 2839 1.465387 CCTAACAATAACAACGGCGCA 59.535 47.619 10.83 0.00 0.00 6.09
2724 2840 1.733360 TCCTAACAATAACAACGGCGC 59.267 47.619 6.90 0.00 0.00 6.53
2725 2841 4.331717 AGAATCCTAACAATAACAACGGCG 59.668 41.667 4.80 4.80 0.00 6.46
2726 2842 5.813080 AGAATCCTAACAATAACAACGGC 57.187 39.130 0.00 0.00 0.00 5.68
2848 2964 9.013229 TGATTGTTGTGTTTCTAATTAGAGCAT 57.987 29.630 14.63 3.64 33.21 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.