Multiple sequence alignment - TraesCS4A01G062800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G062800 chr4A 100.000 4616 0 0 1 4616 59324672 59320057 0.000000e+00 8525
1 TraesCS4A01G062800 chr4A 90.299 134 11 2 3723 3856 583713358 583713489 1.710000e-39 174
2 TraesCS4A01G062800 chr4D 94.277 1625 74 11 798 2417 401641443 401639833 0.000000e+00 2468
3 TraesCS4A01G062800 chr4D 91.793 1316 82 13 2414 3717 401639777 401638476 0.000000e+00 1808
4 TraesCS4A01G062800 chr4D 81.156 796 88 42 3854 4616 401638478 401637712 2.390000e-162 582
5 TraesCS4A01G062800 chr4B 92.778 1634 78 15 798 2417 497232981 497231374 0.000000e+00 2327
6 TraesCS4A01G062800 chr4B 93.846 1105 60 5 2414 3512 497231321 497230219 0.000000e+00 1657
7 TraesCS4A01G062800 chr4B 87.264 424 39 10 4197 4616 497229573 497229161 1.940000e-128 470
8 TraesCS4A01G062800 chr4B 83.673 147 16 2 3854 3993 497229903 497229758 1.040000e-26 132
9 TraesCS4A01G062800 chr3B 98.377 801 13 0 1 801 790410000 790409200 0.000000e+00 1408
10 TraesCS4A01G062800 chr3B 89.706 136 12 2 3724 3859 519860214 519860081 6.140000e-39 172
11 TraesCS4A01G062800 chr2B 98.373 799 13 0 1 799 131079204 131078406 0.000000e+00 1404
12 TraesCS4A01G062800 chr2B 90.580 138 10 3 3723 3859 76912269 76912134 3.670000e-41 180
13 TraesCS4A01G062800 chr7A 98.248 799 14 0 1 799 448092054 448091256 0.000000e+00 1399
14 TraesCS4A01G062800 chr7A 94.750 800 39 3 1 799 468838290 468839087 0.000000e+00 1242
15 TraesCS4A01G062800 chr7A 89.286 140 13 2 3723 3862 63364045 63363908 1.710000e-39 174
16 TraesCS4A01G062800 chr6B 97.770 807 17 1 1 807 551948547 551949352 0.000000e+00 1389
17 TraesCS4A01G062800 chr6B 88.679 477 54 0 1 477 212054779 212055255 2.390000e-162 582
18 TraesCS4A01G062800 chr6B 95.484 155 7 0 645 799 551948411 551948257 9.920000e-62 248
19 TraesCS4A01G062800 chr6B 90.299 134 11 2 3725 3858 474175818 474175687 1.710000e-39 174
20 TraesCS4A01G062800 chr3A 97.872 799 17 0 1 799 191839981 191839183 0.000000e+00 1382
21 TraesCS4A01G062800 chr5A 97.747 799 18 0 1 799 118774511 118773713 0.000000e+00 1376
22 TraesCS4A01G062800 chr1A 97.747 799 18 0 1 799 432759817 432760615 0.000000e+00 1376
23 TraesCS4A01G062800 chr5D 90.441 136 10 3 3723 3857 280785793 280785926 4.750000e-40 176
24 TraesCS4A01G062800 chr5D 88.652 141 14 2 3723 3863 150835699 150835561 2.210000e-38 171
25 TraesCS4A01G062800 chr3D 90.299 134 11 1 3725 3858 479626934 479627065 1.710000e-39 174
26 TraesCS4A01G062800 chr2D 89.781 137 12 2 3723 3859 204142266 204142400 1.710000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G062800 chr4A 59320057 59324672 4615 True 8525.000000 8525 100.000000 1 4616 1 chr4A.!!$R1 4615
1 TraesCS4A01G062800 chr4D 401637712 401641443 3731 True 1619.333333 2468 89.075333 798 4616 3 chr4D.!!$R1 3818
2 TraesCS4A01G062800 chr4B 497229161 497232981 3820 True 1146.500000 2327 89.390250 798 4616 4 chr4B.!!$R1 3818
3 TraesCS4A01G062800 chr3B 790409200 790410000 800 True 1408.000000 1408 98.377000 1 801 1 chr3B.!!$R2 800
4 TraesCS4A01G062800 chr2B 131078406 131079204 798 True 1404.000000 1404 98.373000 1 799 1 chr2B.!!$R2 798
5 TraesCS4A01G062800 chr7A 448091256 448092054 798 True 1399.000000 1399 98.248000 1 799 1 chr7A.!!$R2 798
6 TraesCS4A01G062800 chr7A 468838290 468839087 797 False 1242.000000 1242 94.750000 1 799 1 chr7A.!!$F1 798
7 TraesCS4A01G062800 chr6B 551948547 551949352 805 False 1389.000000 1389 97.770000 1 807 1 chr6B.!!$F2 806
8 TraesCS4A01G062800 chr3A 191839183 191839981 798 True 1382.000000 1382 97.872000 1 799 1 chr3A.!!$R1 798
9 TraesCS4A01G062800 chr5A 118773713 118774511 798 True 1376.000000 1376 97.747000 1 799 1 chr5A.!!$R1 798
10 TraesCS4A01G062800 chr1A 432759817 432760615 798 False 1376.000000 1376 97.747000 1 799 1 chr1A.!!$F1 798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 951 0.105709 CCTTCCTCCTCCTCCCTCTC 60.106 65.0 0.00 0.0 0.00 3.20 F
1170 1177 0.319555 ACAAGGTCATGTCGTGGACG 60.320 55.0 0.00 0.0 41.45 4.79 F
2509 2585 0.033208 GATGGGAGTGGGCCAATGAA 60.033 55.0 13.03 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2131 0.249238 CTCGAGCCACTGGATACTGC 60.249 60.0 0.00 0.0 39.52 4.40 R
3070 3149 0.101040 CCATGGGCATGTTAAGTGCG 59.899 55.0 2.85 0.0 43.40 5.34 R
3997 4234 0.107456 ATCAGGCGAGTATGCTTGGG 59.893 55.0 0.00 0.0 41.79 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.137697 ATCTGATGCCATGCTCCTGA 58.862 50.000 0.00 0.00 0.00 3.86
501 502 1.304713 TTCTCGTTCCCGGCCTAGT 60.305 57.895 0.00 0.00 33.95 2.57
713 714 5.677567 GGAATTGGTCCGGTTTTAGAGATA 58.322 41.667 0.00 0.00 36.40 1.98
739 740 3.244770 GGGGCTGATTGATCCGGTATTAA 60.245 47.826 0.00 0.00 0.00 1.40
776 777 7.493743 AATTGATCCATCAGAGAAGATTTCG 57.506 36.000 0.00 0.00 38.19 3.46
847 854 1.008538 GCAGCCCAAACACGAACAG 60.009 57.895 0.00 0.00 0.00 3.16
890 897 2.304470 ACCCAAAAATCCCCCAAAATCG 59.696 45.455 0.00 0.00 0.00 3.34
916 923 1.591504 CCCAAACCGAAATCCCCACG 61.592 60.000 0.00 0.00 0.00 4.94
937 944 1.381463 GGTACGCCTTCCTCCTCCT 60.381 63.158 0.00 0.00 0.00 3.69
938 945 1.393487 GGTACGCCTTCCTCCTCCTC 61.393 65.000 0.00 0.00 0.00 3.71
939 946 1.076192 TACGCCTTCCTCCTCCTCC 60.076 63.158 0.00 0.00 0.00 4.30
940 947 2.584873 TACGCCTTCCTCCTCCTCCC 62.585 65.000 0.00 0.00 0.00 4.30
941 948 2.370633 GCCTTCCTCCTCCTCCCT 59.629 66.667 0.00 0.00 0.00 4.20
942 949 1.764454 GCCTTCCTCCTCCTCCCTC 60.764 68.421 0.00 0.00 0.00 4.30
943 950 2.023532 CCTTCCTCCTCCTCCCTCT 58.976 63.158 0.00 0.00 0.00 3.69
944 951 0.105709 CCTTCCTCCTCCTCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
1170 1177 0.319555 ACAAGGTCATGTCGTGGACG 60.320 55.000 0.00 0.00 41.45 4.79
1305 1312 4.467107 AGACTCCCTCGCCCTCCC 62.467 72.222 0.00 0.00 0.00 4.30
1313 1320 3.952628 CTCGCCCTCCCCGTTTGTC 62.953 68.421 0.00 0.00 0.00 3.18
1317 1324 1.918800 CCCTCCCCGTTTGTCTCCT 60.919 63.158 0.00 0.00 0.00 3.69
1318 1325 0.616679 CCCTCCCCGTTTGTCTCCTA 60.617 60.000 0.00 0.00 0.00 2.94
1326 1336 0.459585 GTTTGTCTCCTATGCGCGGA 60.460 55.000 8.83 5.00 0.00 5.54
1332 1342 2.032808 GTCTCCTATGCGCGGATTTTTC 60.033 50.000 20.84 1.56 0.00 2.29
1333 1343 1.264288 CTCCTATGCGCGGATTTTTCC 59.736 52.381 20.84 0.00 0.00 3.13
1338 1348 2.058913 TGCGCGGATTTTTCCTTTTC 57.941 45.000 8.83 0.00 0.00 2.29
1339 1349 1.338337 TGCGCGGATTTTTCCTTTTCA 59.662 42.857 8.83 0.00 0.00 2.69
1352 1364 3.766545 TCCTTTTCAGGGTGATTTGAGG 58.233 45.455 0.00 0.00 41.25 3.86
1374 1386 4.748102 GGTGAATTGGATGCAATTGCTATG 59.252 41.667 27.32 0.00 42.66 2.23
1420 1434 5.478233 AATTTCGTAATGTGCTATTGCGA 57.522 34.783 17.89 17.89 42.53 5.10
1424 1438 4.866921 TCGTAATGTGCTATTGCGACTAT 58.133 39.130 17.89 0.00 40.21 2.12
1425 1439 4.679654 TCGTAATGTGCTATTGCGACTATG 59.320 41.667 17.89 0.00 40.21 2.23
1498 1512 3.120041 ACAAACCTGTGTTTTAATGCGC 58.880 40.909 0.00 0.00 41.92 6.09
1534 1548 5.235850 TGAATCCAGTTTGTTACAGGCTA 57.764 39.130 0.00 0.00 33.60 3.93
1590 1604 6.215845 AGAACTTGTGGCAATACAATTTCAC 58.784 36.000 21.35 5.09 45.24 3.18
1591 1605 5.789643 ACTTGTGGCAATACAATTTCACT 57.210 34.783 0.00 0.00 39.60 3.41
1725 1740 6.208402 TGAAATATAATTATGCGTGTGGCCAT 59.792 34.615 9.72 0.00 42.61 4.40
1763 1778 7.064016 GGATCTGATCAAAATAACTATCGCTCC 59.936 40.741 18.64 0.00 0.00 4.70
1776 1791 1.520342 CGCTCCTAGCAGTTCTGCC 60.520 63.158 19.28 4.22 42.58 4.85
1886 1901 9.901172 ACCAAACTTTATTTATGGTAGGAGTAG 57.099 33.333 0.00 0.00 42.38 2.57
1896 1911 7.841282 TTATGGTAGGAGTAGAAGAGAATGG 57.159 40.000 0.00 0.00 0.00 3.16
1905 1920 6.238925 GGAGTAGAAGAGAATGGAGCTACTTC 60.239 46.154 0.00 0.00 38.78 3.01
1935 1950 5.120208 GTGTCTTCGCTTCATGCTTAACTTA 59.880 40.000 0.00 0.00 40.11 2.24
2013 2028 8.680039 TGCATTGACATAATATCATGACTGAA 57.320 30.769 0.00 0.00 34.37 3.02
2116 2131 5.237127 TGTTGTGCTTTTGATGAGTGTCTAG 59.763 40.000 0.00 0.00 0.00 2.43
2129 2144 3.027412 AGTGTCTAGCAGTATCCAGTGG 58.973 50.000 1.40 1.40 0.00 4.00
2152 2167 1.405256 CGAGCCAGATTCTTGCAGTCT 60.405 52.381 11.86 0.00 0.00 3.24
2160 2175 3.522750 AGATTCTTGCAGTCTGGGATTCT 59.477 43.478 1.14 0.00 0.00 2.40
2163 2178 5.441718 TTCTTGCAGTCTGGGATTCTATT 57.558 39.130 1.14 0.00 0.00 1.73
2167 2182 6.384015 TCTTGCAGTCTGGGATTCTATTCTTA 59.616 38.462 1.14 0.00 0.00 2.10
2175 2190 7.936301 GTCTGGGATTCTATTCTTATCAGCTTT 59.064 37.037 0.00 0.00 0.00 3.51
2288 2303 7.254852 TCTTAAAGATTTTGTTGTGACCACAC 58.745 34.615 1.83 0.00 46.09 3.82
2379 2394 4.110482 GCAATGAAATCAGTGGAAGCATC 58.890 43.478 12.19 0.00 41.70 3.91
2380 2395 4.381185 GCAATGAAATCAGTGGAAGCATCA 60.381 41.667 12.19 0.00 41.70 3.07
2509 2585 0.033208 GATGGGAGTGGGCCAATGAA 60.033 55.000 13.03 0.00 0.00 2.57
2587 2663 1.272490 CAGGAAGCAGGTCGTGAGTTA 59.728 52.381 0.00 0.00 35.83 2.24
2699 2775 6.112927 AGAGGGATAAATCTCTTCTCATGC 57.887 41.667 0.00 0.00 37.86 4.06
2721 2797 0.035725 CAGCTTGTGGATCTCAGGCA 60.036 55.000 20.17 0.00 39.73 4.75
2764 2840 5.532406 CCTTGAAGTCCAGAGTTTGATTCAA 59.468 40.000 0.00 0.00 34.89 2.69
2813 2889 4.102838 AGAAGCAGATGATGGCACTTCTAT 59.897 41.667 11.27 0.00 41.40 1.98
2948 3027 2.237392 GAGCAGGGTCCAGTAACTGATT 59.763 50.000 0.00 0.00 32.44 2.57
2950 3029 3.197983 AGCAGGGTCCAGTAACTGATTAC 59.802 47.826 0.00 0.00 41.00 1.89
2952 3031 2.764572 AGGGTCCAGTAACTGATTACGG 59.235 50.000 0.00 0.00 44.69 4.02
2969 3048 3.706373 GGACTTCTGGCGCAGGGA 61.706 66.667 10.83 0.09 31.51 4.20
2997 3076 0.394565 ATTCAGTATCGGCCTCCTGC 59.605 55.000 0.00 0.00 40.16 4.85
3015 3094 0.394488 GCCCCTGAAACTTCTAGCCC 60.394 60.000 0.00 0.00 0.00 5.19
3023 3102 6.049790 CCTGAAACTTCTAGCCCAGTAATAC 58.950 44.000 0.00 0.00 0.00 1.89
3050 3129 1.112315 AGCATTTTTGTCGGCCACCA 61.112 50.000 2.24 0.00 0.00 4.17
3064 3143 1.979855 CCACCACACAACCAATCTCA 58.020 50.000 0.00 0.00 0.00 3.27
3070 3149 2.554032 CACACAACCAATCTCAAGTCCC 59.446 50.000 0.00 0.00 0.00 4.46
3094 3173 3.448301 CACTTAACATGCCCATGGACATT 59.552 43.478 15.22 2.30 42.91 2.71
3109 3188 2.096909 GGACATTGACACTCAAACGACG 60.097 50.000 0.00 0.00 40.12 5.12
3139 3218 3.213506 CCTCAACACACAAGGTTCATCA 58.786 45.455 0.00 0.00 0.00 3.07
3181 3260 2.093235 GCCTGCTCTACCAGACTTTGAT 60.093 50.000 0.00 0.00 34.77 2.57
3200 3279 3.861276 ATGACATGCATCTGTGGTTTG 57.139 42.857 0.00 0.00 28.85 2.93
3250 3329 9.152327 ACTATTCAAGATTATGATGAGTCTCCA 57.848 33.333 0.00 0.00 0.00 3.86
3258 3337 3.160679 TGATGAGTCTCCACAGTCAGA 57.839 47.619 0.00 0.00 0.00 3.27
3324 3403 6.134535 TCAACATGGTATTCCCTAGTTTGT 57.865 37.500 0.00 0.00 31.38 2.83
3329 3408 7.639378 ACATGGTATTCCCTAGTTTGTTGTAT 58.361 34.615 0.00 0.00 0.00 2.29
3332 3411 6.120220 GGTATTCCCTAGTTTGTTGTATGCT 58.880 40.000 0.00 0.00 0.00 3.79
3346 3425 6.437928 TGTTGTATGCTGAATGTTTCTGTTC 58.562 36.000 0.00 0.00 0.00 3.18
3362 3441 7.329226 TGTTTCTGTTCTTCTTTTTCTGCAAAG 59.671 33.333 0.00 0.00 35.39 2.77
3382 3461 3.794717 AGCATGCAGAGACTGTATTCTG 58.205 45.455 21.98 14.24 42.87 3.02
3387 3466 5.722021 TGCAGAGACTGTATTCTGTGTAA 57.278 39.130 17.76 4.98 42.17 2.41
3392 3471 5.478679 AGAGACTGTATTCTGTGTAACTGCT 59.521 40.000 0.00 0.00 38.04 4.24
3396 3475 8.967918 AGACTGTATTCTGTGTAACTGCTAATA 58.032 33.333 0.00 0.00 38.04 0.98
3428 3507 1.713597 TGACACGCTATGCACTTCAG 58.286 50.000 0.00 0.00 0.00 3.02
3464 3543 6.018669 GGAGTTCAGATTAGTAGGATTTTGCG 60.019 42.308 0.00 0.00 0.00 4.85
3479 3558 6.377146 AGGATTTTGCGAAGTTTATACCATGT 59.623 34.615 0.00 0.00 0.00 3.21
3483 3562 6.751514 TTGCGAAGTTTATACCATGTCATT 57.248 33.333 0.00 0.00 0.00 2.57
3490 3569 9.178758 GAAGTTTATACCATGTCATTTCCTTCT 57.821 33.333 0.00 0.00 0.00 2.85
3498 3580 6.098124 ACCATGTCATTTCCTTCTTTTGTCAA 59.902 34.615 0.00 0.00 0.00 3.18
3512 3594 9.112725 CTTCTTTTGTCAAGGAAATGGATTTTT 57.887 29.630 5.14 0.00 28.21 1.94
3544 3744 7.026631 TGCTTATTATGTTATGGTGTTCTGC 57.973 36.000 0.00 0.00 0.00 4.26
3556 3756 3.131223 TGGTGTTCTGCTACTATCTCAGC 59.869 47.826 0.00 0.00 38.31 4.26
3599 3799 6.939163 ACTCACTTTCTTATTTCAGCTGATGT 59.061 34.615 19.04 11.76 0.00 3.06
3627 3827 2.500098 TGAAGCATAGGTGGTGGTCTAC 59.500 50.000 0.00 0.00 35.94 2.59
3649 3849 1.885157 CACATCGGGCAGCAACATT 59.115 52.632 0.00 0.00 0.00 2.71
3650 3850 1.093972 CACATCGGGCAGCAACATTA 58.906 50.000 0.00 0.00 0.00 1.90
3651 3851 1.094785 ACATCGGGCAGCAACATTAC 58.905 50.000 0.00 0.00 0.00 1.89
3652 3852 1.340017 ACATCGGGCAGCAACATTACT 60.340 47.619 0.00 0.00 0.00 2.24
3653 3853 1.745087 CATCGGGCAGCAACATTACTT 59.255 47.619 0.00 0.00 0.00 2.24
3661 3861 4.217550 GGCAGCAACATTACTTTAGGTTCA 59.782 41.667 0.00 0.00 0.00 3.18
3662 3862 5.393962 GCAGCAACATTACTTTAGGTTCAG 58.606 41.667 0.00 0.00 0.00 3.02
3665 3865 7.078228 CAGCAACATTACTTTAGGTTCAGAAC 58.922 38.462 4.52 4.52 0.00 3.01
3722 3922 4.981812 CTGAAAGTTACTTTGTACCCCCT 58.018 43.478 15.57 0.00 33.49 4.79
3723 3923 5.382616 CTGAAAGTTACTTTGTACCCCCTT 58.617 41.667 15.57 0.00 33.49 3.95
3724 3924 6.512514 TGAAAGTTACTTTGTACCCCCTTA 57.487 37.500 15.57 0.00 33.49 2.69
3725 3925 6.536447 TGAAAGTTACTTTGTACCCCCTTAG 58.464 40.000 15.57 0.00 33.49 2.18
3726 3926 6.329723 TGAAAGTTACTTTGTACCCCCTTAGA 59.670 38.462 15.57 0.00 33.49 2.10
3727 3927 6.370186 AAGTTACTTTGTACCCCCTTAGAG 57.630 41.667 0.00 0.00 0.00 2.43
3728 3928 5.658474 AGTTACTTTGTACCCCCTTAGAGA 58.342 41.667 0.00 0.00 0.00 3.10
3729 3929 6.269974 AGTTACTTTGTACCCCCTTAGAGAT 58.730 40.000 0.00 0.00 0.00 2.75
3730 3930 6.734281 AGTTACTTTGTACCCCCTTAGAGATT 59.266 38.462 0.00 0.00 0.00 2.40
3731 3931 7.239143 AGTTACTTTGTACCCCCTTAGAGATTT 59.761 37.037 0.00 0.00 0.00 2.17
3732 3932 6.063496 ACTTTGTACCCCCTTAGAGATTTC 57.937 41.667 0.00 0.00 0.00 2.17
3733 3933 5.550403 ACTTTGTACCCCCTTAGAGATTTCA 59.450 40.000 0.00 0.00 0.00 2.69
3734 3934 6.045106 ACTTTGTACCCCCTTAGAGATTTCAA 59.955 38.462 0.00 0.00 0.00 2.69
3735 3935 6.652205 TTGTACCCCCTTAGAGATTTCAAT 57.348 37.500 0.00 0.00 0.00 2.57
3736 3936 7.758820 TTGTACCCCCTTAGAGATTTCAATA 57.241 36.000 0.00 0.00 0.00 1.90
3737 3937 7.133133 TGTACCCCCTTAGAGATTTCAATAC 57.867 40.000 0.00 0.00 0.00 1.89
3738 3938 5.291905 ACCCCCTTAGAGATTTCAATACG 57.708 43.478 0.00 0.00 0.00 3.06
3739 3939 4.102681 ACCCCCTTAGAGATTTCAATACGG 59.897 45.833 0.00 0.00 0.00 4.02
3740 3940 4.347000 CCCCCTTAGAGATTTCAATACGGA 59.653 45.833 0.00 0.00 0.00 4.69
3741 3941 5.298347 CCCCTTAGAGATTTCAATACGGAC 58.702 45.833 0.00 0.00 0.00 4.79
3742 3942 5.070580 CCCCTTAGAGATTTCAATACGGACT 59.929 44.000 0.00 0.00 0.00 3.85
3743 3943 6.267014 CCCCTTAGAGATTTCAATACGGACTA 59.733 42.308 0.00 0.00 0.00 2.59
3744 3944 7.146648 CCCTTAGAGATTTCAATACGGACTAC 58.853 42.308 0.00 0.00 0.00 2.73
3745 3945 7.201884 CCCTTAGAGATTTCAATACGGACTACA 60.202 40.741 0.00 0.00 0.00 2.74
3746 3946 8.361139 CCTTAGAGATTTCAATACGGACTACAT 58.639 37.037 0.00 0.00 0.00 2.29
3749 3949 7.361127 AGAGATTTCAATACGGACTACATACG 58.639 38.462 0.00 0.00 0.00 3.06
3750 3950 6.444633 AGATTTCAATACGGACTACATACGG 58.555 40.000 0.00 0.00 0.00 4.02
3751 3951 5.833406 TTTCAATACGGACTACATACGGA 57.167 39.130 0.00 0.00 0.00 4.69
3752 3952 6.395426 TTTCAATACGGACTACATACGGAT 57.605 37.500 0.00 0.00 31.40 4.18
3753 3953 5.366829 TCAATACGGACTACATACGGATG 57.633 43.478 5.94 5.94 39.16 3.51
3755 3955 5.997129 TCAATACGGACTACATACGGATGTA 59.003 40.000 19.32 19.32 44.77 2.29
3756 3956 6.656270 TCAATACGGACTACATACGGATGTAT 59.344 38.462 20.64 11.04 45.42 2.29
3767 3967 3.728076 ACGGATGTATGTAGACGCATT 57.272 42.857 0.00 0.00 0.00 3.56
3768 3968 4.054780 ACGGATGTATGTAGACGCATTT 57.945 40.909 0.00 0.00 0.00 2.32
3769 3969 4.439057 ACGGATGTATGTAGACGCATTTT 58.561 39.130 0.00 0.00 0.00 1.82
3770 3970 5.593968 ACGGATGTATGTAGACGCATTTTA 58.406 37.500 0.00 0.00 0.00 1.52
3771 3971 5.690409 ACGGATGTATGTAGACGCATTTTAG 59.310 40.000 0.00 0.00 0.00 1.85
3772 3972 5.918576 CGGATGTATGTAGACGCATTTTAGA 59.081 40.000 0.00 0.00 0.00 2.10
3773 3973 6.088217 CGGATGTATGTAGACGCATTTTAGAG 59.912 42.308 0.00 0.00 0.00 2.43
3774 3974 6.924060 GGATGTATGTAGACGCATTTTAGAGT 59.076 38.462 0.00 0.00 0.00 3.24
3775 3975 7.096023 GGATGTATGTAGACGCATTTTAGAGTG 60.096 40.741 0.00 0.00 0.00 3.51
3776 3976 6.627243 TGTATGTAGACGCATTTTAGAGTGT 58.373 36.000 0.00 0.00 0.00 3.55
3777 3977 7.764331 TGTATGTAGACGCATTTTAGAGTGTA 58.236 34.615 0.00 0.00 0.00 2.90
3778 3978 7.913821 TGTATGTAGACGCATTTTAGAGTGTAG 59.086 37.037 0.00 0.00 0.00 2.74
3779 3979 6.505044 TGTAGACGCATTTTAGAGTGTAGA 57.495 37.500 0.00 0.00 0.00 2.59
3780 3980 6.552629 TGTAGACGCATTTTAGAGTGTAGAG 58.447 40.000 0.00 0.00 0.00 2.43
3781 3981 5.646577 AGACGCATTTTAGAGTGTAGAGT 57.353 39.130 0.00 0.00 0.00 3.24
3782 3982 6.026947 AGACGCATTTTAGAGTGTAGAGTT 57.973 37.500 0.00 0.00 0.00 3.01
3783 3983 7.154435 AGACGCATTTTAGAGTGTAGAGTTA 57.846 36.000 0.00 0.00 0.00 2.24
3784 3984 7.028361 AGACGCATTTTAGAGTGTAGAGTTAC 58.972 38.462 0.00 0.00 0.00 2.50
3785 3985 6.921914 ACGCATTTTAGAGTGTAGAGTTACT 58.078 36.000 0.00 0.00 0.00 2.24
3786 3986 7.028361 ACGCATTTTAGAGTGTAGAGTTACTC 58.972 38.462 3.85 3.85 42.77 2.59
3787 3987 7.027760 CGCATTTTAGAGTGTAGAGTTACTCA 58.972 38.462 15.23 0.00 44.41 3.41
3788 3988 7.702772 CGCATTTTAGAGTGTAGAGTTACTCAT 59.297 37.037 15.23 2.67 44.41 2.90
3789 3989 9.372369 GCATTTTAGAGTGTAGAGTTACTCATT 57.628 33.333 15.23 0.00 44.41 2.57
3793 3993 9.924650 TTTAGAGTGTAGAGTTACTCATTTTCC 57.075 33.333 15.23 0.05 44.41 3.13
3794 3994 7.784470 AGAGTGTAGAGTTACTCATTTTCCT 57.216 36.000 15.23 2.50 44.41 3.36
3795 3995 7.832769 AGAGTGTAGAGTTACTCATTTTCCTC 58.167 38.462 15.23 10.80 44.41 3.71
3796 3996 6.937392 AGTGTAGAGTTACTCATTTTCCTCC 58.063 40.000 15.23 0.00 32.06 4.30
3797 3997 5.805994 GTGTAGAGTTACTCATTTTCCTCCG 59.194 44.000 15.23 0.00 32.06 4.63
3798 3998 5.479375 TGTAGAGTTACTCATTTTCCTCCGT 59.521 40.000 15.23 0.00 32.06 4.69
3799 3999 6.660521 TGTAGAGTTACTCATTTTCCTCCGTA 59.339 38.462 15.23 0.00 32.06 4.02
3800 4000 6.793505 AGAGTTACTCATTTTCCTCCGTAT 57.206 37.500 15.23 0.00 32.06 3.06
3801 4001 7.893124 AGAGTTACTCATTTTCCTCCGTATA 57.107 36.000 15.23 0.00 32.06 1.47
3802 4002 8.480133 AGAGTTACTCATTTTCCTCCGTATAT 57.520 34.615 15.23 0.00 32.06 0.86
3803 4003 9.584008 AGAGTTACTCATTTTCCTCCGTATATA 57.416 33.333 15.23 0.00 32.06 0.86
3804 4004 9.843334 GAGTTACTCATTTTCCTCCGTATATAG 57.157 37.037 7.59 0.00 0.00 1.31
3805 4005 9.364653 AGTTACTCATTTTCCTCCGTATATAGT 57.635 33.333 0.00 0.00 0.00 2.12
3806 4006 9.623350 GTTACTCATTTTCCTCCGTATATAGTC 57.377 37.037 0.00 0.00 0.00 2.59
3807 4007 9.584008 TTACTCATTTTCCTCCGTATATAGTCT 57.416 33.333 0.00 0.00 0.00 3.24
3809 4009 9.012161 ACTCATTTTCCTCCGTATATAGTCTAC 57.988 37.037 0.00 0.00 0.00 2.59
3810 4010 8.929260 TCATTTTCCTCCGTATATAGTCTACA 57.071 34.615 0.00 0.00 0.00 2.74
3811 4011 9.529823 TCATTTTCCTCCGTATATAGTCTACAT 57.470 33.333 0.00 0.00 0.00 2.29
3814 4014 7.698506 TTCCTCCGTATATAGTCTACATTGG 57.301 40.000 0.00 0.00 0.00 3.16
3815 4015 7.024345 TCCTCCGTATATAGTCTACATTGGA 57.976 40.000 0.00 0.00 0.00 3.53
3816 4016 7.464273 TCCTCCGTATATAGTCTACATTGGAA 58.536 38.462 0.00 0.00 0.00 3.53
3817 4017 8.114102 TCCTCCGTATATAGTCTACATTGGAAT 58.886 37.037 0.00 0.00 0.00 3.01
3818 4018 8.407064 CCTCCGTATATAGTCTACATTGGAATC 58.593 40.741 0.00 0.00 0.00 2.52
3819 4019 9.179909 CTCCGTATATAGTCTACATTGGAATCT 57.820 37.037 0.00 0.00 0.00 2.40
3820 4020 9.175312 TCCGTATATAGTCTACATTGGAATCTC 57.825 37.037 0.00 0.00 0.00 2.75
3821 4021 9.179909 CCGTATATAGTCTACATTGGAATCTCT 57.820 37.037 0.00 0.00 0.00 3.10
3831 4031 9.507329 TCTACATTGGAATCTCTATAAAATGGC 57.493 33.333 0.00 0.00 0.00 4.40
3832 4032 9.512588 CTACATTGGAATCTCTATAAAATGGCT 57.487 33.333 0.00 0.00 0.00 4.75
3833 4033 8.773033 ACATTGGAATCTCTATAAAATGGCTT 57.227 30.769 0.00 0.00 0.00 4.35
3834 4034 9.866655 ACATTGGAATCTCTATAAAATGGCTTA 57.133 29.630 0.00 0.00 0.00 3.09
3848 4048 9.802039 ATAAAATGGCTTATATTTAGGAACGGA 57.198 29.630 0.00 0.00 0.00 4.69
3849 4049 7.745620 AAATGGCTTATATTTAGGAACGGAG 57.254 36.000 0.00 0.00 0.00 4.63
3850 4050 5.223449 TGGCTTATATTTAGGAACGGAGG 57.777 43.478 0.00 0.00 0.00 4.30
3851 4051 4.041198 TGGCTTATATTTAGGAACGGAGGG 59.959 45.833 0.00 0.00 0.00 4.30
3852 4052 4.285260 GGCTTATATTTAGGAACGGAGGGA 59.715 45.833 0.00 0.00 0.00 4.20
3853 4053 5.480205 GCTTATATTTAGGAACGGAGGGAG 58.520 45.833 0.00 0.00 0.00 4.30
3854 4054 5.011840 GCTTATATTTAGGAACGGAGGGAGT 59.988 44.000 0.00 0.00 0.00 3.85
3855 4055 6.210185 GCTTATATTTAGGAACGGAGGGAGTA 59.790 42.308 0.00 0.00 0.00 2.59
3862 4062 2.280628 GAACGGAGGGAGTATTTGCTG 58.719 52.381 0.00 0.00 0.00 4.41
3868 4068 3.274288 GAGGGAGTATTTGCTGAACAGG 58.726 50.000 3.99 0.00 0.00 4.00
3875 4075 5.831997 AGTATTTGCTGAACAGGACAAAAC 58.168 37.500 10.03 9.60 35.79 2.43
3881 4081 0.380378 GAACAGGACAAAACGCAGCA 59.620 50.000 0.00 0.00 0.00 4.41
3887 4087 1.069906 GGACAAAACGCAGCAGTGTAG 60.070 52.381 0.00 0.00 37.54 2.74
3897 4097 2.808543 GCAGCAGTGTAGTTTAGCAGTT 59.191 45.455 0.00 0.00 0.00 3.16
3911 4111 8.709386 AGTTTAGCAGTTACTAATGTCATCAG 57.291 34.615 0.00 0.00 32.35 2.90
3971 4178 2.232941 ACAGGATGCATGCAGGAAAAAG 59.767 45.455 26.69 13.50 42.53 2.27
3975 4182 3.518590 GATGCATGCAGGAAAAAGAAGG 58.481 45.455 26.69 0.00 0.00 3.46
3977 4184 1.001181 GCATGCAGGAAAAAGAAGGCA 59.999 47.619 14.21 0.00 35.54 4.75
3979 4186 0.675633 TGCAGGAAAAAGAAGGCAGC 59.324 50.000 0.00 0.00 0.00 5.25
3980 4187 0.675633 GCAGGAAAAAGAAGGCAGCA 59.324 50.000 0.00 0.00 0.00 4.41
3981 4188 1.274447 GCAGGAAAAAGAAGGCAGCAT 59.726 47.619 0.00 0.00 0.00 3.79
3993 4230 7.651027 AAGAAGGCAGCATTATTTAGATGTT 57.349 32.000 0.00 0.00 0.00 2.71
3995 4232 8.071177 AGAAGGCAGCATTATTTAGATGTTTT 57.929 30.769 0.00 0.00 0.00 2.43
3997 4234 9.237846 GAAGGCAGCATTATTTAGATGTTTTAC 57.762 33.333 0.00 0.00 0.00 2.01
3998 4235 7.716612 AGGCAGCATTATTTAGATGTTTTACC 58.283 34.615 0.00 0.00 0.00 2.85
3999 4236 6.923508 GGCAGCATTATTTAGATGTTTTACCC 59.076 38.462 0.00 0.00 0.00 3.69
4002 4239 9.520204 CAGCATTATTTAGATGTTTTACCCAAG 57.480 33.333 0.00 0.00 0.00 3.61
4003 4240 8.197439 AGCATTATTTAGATGTTTTACCCAAGC 58.803 33.333 0.00 0.00 0.00 4.01
4004 4241 7.978975 GCATTATTTAGATGTTTTACCCAAGCA 59.021 33.333 0.00 0.00 0.00 3.91
4008 4245 8.823220 ATTTAGATGTTTTACCCAAGCATACT 57.177 30.769 0.00 0.00 36.50 2.12
4009 4246 7.859325 TTAGATGTTTTACCCAAGCATACTC 57.141 36.000 0.00 0.00 36.50 2.59
4010 4247 4.876107 AGATGTTTTACCCAAGCATACTCG 59.124 41.667 0.00 0.00 36.50 4.18
4011 4248 2.745281 TGTTTTACCCAAGCATACTCGC 59.255 45.455 0.00 0.00 0.00 5.03
4012 4249 2.032680 TTTACCCAAGCATACTCGCC 57.967 50.000 0.00 0.00 0.00 5.54
4014 4251 0.464036 TACCCAAGCATACTCGCCTG 59.536 55.000 0.00 0.00 0.00 4.85
4015 4252 1.264749 ACCCAAGCATACTCGCCTGA 61.265 55.000 0.00 0.00 0.00 3.86
4017 4254 1.344438 CCCAAGCATACTCGCCTGATA 59.656 52.381 0.00 0.00 0.00 2.15
4020 4257 3.681897 CCAAGCATACTCGCCTGATATTC 59.318 47.826 0.00 0.00 0.00 1.75
4021 4258 4.309933 CAAGCATACTCGCCTGATATTCA 58.690 43.478 0.00 0.00 0.00 2.57
4026 4263 5.007626 GCATACTCGCCTGATATTCAAACAA 59.992 40.000 0.00 0.00 0.00 2.83
4027 4264 4.946784 ACTCGCCTGATATTCAAACAAC 57.053 40.909 0.00 0.00 0.00 3.32
4028 4265 3.689649 ACTCGCCTGATATTCAAACAACC 59.310 43.478 0.00 0.00 0.00 3.77
4030 4267 5.092554 TCGCCTGATATTCAAACAACCTA 57.907 39.130 0.00 0.00 0.00 3.08
4031 4268 5.680619 TCGCCTGATATTCAAACAACCTAT 58.319 37.500 0.00 0.00 0.00 2.57
4032 4269 6.119536 TCGCCTGATATTCAAACAACCTATT 58.880 36.000 0.00 0.00 0.00 1.73
4034 4271 6.507023 GCCTGATATTCAAACAACCTATTGG 58.493 40.000 0.00 0.00 40.42 3.16
4035 4272 6.507023 CCTGATATTCAAACAACCTATTGGC 58.493 40.000 0.00 0.00 40.42 4.52
4036 4273 6.130298 TGATATTCAAACAACCTATTGGCG 57.870 37.500 0.00 0.00 40.42 5.69
4037 4274 5.883115 TGATATTCAAACAACCTATTGGCGA 59.117 36.000 0.00 0.00 40.42 5.54
4039 4276 7.717436 TGATATTCAAACAACCTATTGGCGATA 59.283 33.333 0.00 0.00 40.42 2.92
4063 4310 5.630680 AGCACTTTAACATGATTCTTTTGCG 59.369 36.000 0.00 0.00 0.00 4.85
4097 4344 1.274447 GCTGCTGCCCTTTCAGAATTT 59.726 47.619 3.85 0.00 36.19 1.82
4107 4354 6.879458 TGCCCTTTCAGAATTTAGAGTTAGTC 59.121 38.462 0.00 0.00 0.00 2.59
4108 4355 7.106890 GCCCTTTCAGAATTTAGAGTTAGTCT 58.893 38.462 0.00 0.00 39.59 3.24
4116 4363 8.831550 CAGAATTTAGAGTTAGTCTTATTGGCC 58.168 37.037 0.00 0.00 36.64 5.36
4117 4364 8.773216 AGAATTTAGAGTTAGTCTTATTGGCCT 58.227 33.333 3.32 0.00 36.64 5.19
4118 4365 9.397280 GAATTTAGAGTTAGTCTTATTGGCCTT 57.603 33.333 3.32 0.00 36.64 4.35
4119 4366 8.966069 ATTTAGAGTTAGTCTTATTGGCCTTC 57.034 34.615 3.32 0.00 36.64 3.46
4120 4367 7.490657 TTAGAGTTAGTCTTATTGGCCTTCA 57.509 36.000 3.32 0.00 36.64 3.02
4122 4369 5.248477 AGAGTTAGTCTTATTGGCCTTCACA 59.752 40.000 3.32 0.00 27.07 3.58
4123 4370 6.067217 AGTTAGTCTTATTGGCCTTCACAT 57.933 37.500 3.32 0.00 0.00 3.21
4153 4418 7.436430 TTTGTAACCTTGTTTTTGAAAACCC 57.564 32.000 14.71 0.00 45.82 4.11
4170 4435 2.295253 CCCGCTTGGTTGTACTCTAG 57.705 55.000 0.00 0.00 0.00 2.43
4171 4436 1.549170 CCCGCTTGGTTGTACTCTAGT 59.451 52.381 0.00 0.00 0.00 2.57
4172 4437 2.756760 CCCGCTTGGTTGTACTCTAGTA 59.243 50.000 0.00 0.00 0.00 1.82
4189 4454 8.375493 ACTCTAGTACACTTATTTTGGGATGA 57.625 34.615 0.00 0.00 0.00 2.92
4192 4457 8.265055 TCTAGTACACTTATTTTGGGATGAAGG 58.735 37.037 0.00 0.00 0.00 3.46
4193 4458 6.187682 AGTACACTTATTTTGGGATGAAGGG 58.812 40.000 0.00 0.00 0.00 3.95
4194 4459 4.352893 ACACTTATTTTGGGATGAAGGGG 58.647 43.478 0.00 0.00 0.00 4.79
4195 4460 3.706086 CACTTATTTTGGGATGAAGGGGG 59.294 47.826 0.00 0.00 0.00 5.40
4207 4472 2.424793 TGAAGGGGGTAGGTTCAGTTT 58.575 47.619 0.00 0.00 0.00 2.66
4242 4507 9.704098 CTAATTTTACAAAGATTAGTCGGAAGC 57.296 33.333 0.00 0.00 31.74 3.86
4248 4513 5.352569 ACAAAGATTAGTCGGAAGCAATCAG 59.647 40.000 9.02 0.00 31.25 2.90
4254 4519 3.214328 AGTCGGAAGCAATCAGTTTTGT 58.786 40.909 0.00 0.00 0.00 2.83
4268 4533 3.380004 CAGTTTTGTTGTAGGGCTTGACA 59.620 43.478 0.00 0.00 0.00 3.58
4270 4536 4.464597 AGTTTTGTTGTAGGGCTTGACAAA 59.535 37.500 0.00 0.00 37.31 2.83
4275 4541 5.133941 TGTTGTAGGGCTTGACAAATGTTA 58.866 37.500 1.92 0.00 37.31 2.41
4282 4549 5.249852 AGGGCTTGACAAATGTTACCTACTA 59.750 40.000 0.00 0.00 0.00 1.82
4298 4565 6.575162 ACCTACTAATTCAGTTGCCTTTTG 57.425 37.500 0.00 0.00 38.80 2.44
4320 4587 3.507162 TCAGCTTCTGGGTGATCAAAA 57.493 42.857 0.00 0.00 45.96 2.44
4322 4589 3.760151 TCAGCTTCTGGGTGATCAAAATG 59.240 43.478 0.00 0.00 45.96 2.32
4333 4600 3.444742 GTGATCAAAATGTGGAGGCATGA 59.555 43.478 0.00 0.00 0.00 3.07
4373 4640 0.968405 ATTGGCAGTGAAAACGGCAT 59.032 45.000 0.00 0.00 34.92 4.40
4374 4641 0.313672 TTGGCAGTGAAAACGGCATC 59.686 50.000 0.00 0.00 34.92 3.91
4399 4666 2.491298 GCTCAGAGTCATCAGAGTGTCA 59.509 50.000 0.00 0.00 40.31 3.58
4406 4673 6.016443 CAGAGTCATCAGAGTGTCATATAGCA 60.016 42.308 0.00 0.00 0.00 3.49
4479 4747 1.335132 TTCGGGCATAGGACAGGGAC 61.335 60.000 0.00 0.00 0.00 4.46
4484 4752 2.291605 GGGCATAGGACAGGGACTTTTT 60.292 50.000 0.00 0.00 34.60 1.94
4489 4757 1.082104 GACAGGGACTTTTTGCGCG 60.082 57.895 0.00 0.00 34.60 6.86
4519 4787 5.477637 ACTCTCCTTGTCCTTACAGTAGAAC 59.522 44.000 0.00 0.00 36.83 3.01
4584 4853 6.326375 TGTGTTTTGTAAATGTCAACCTGTC 58.674 36.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.194781 ACTGGGCAGTCGGACTTGAT 61.195 55.000 8.18 0.00 36.92 2.57
152 153 4.630785 CCGGATGAGCGCGTCGAT 62.631 66.667 8.43 0.00 0.00 3.59
446 447 0.311165 CCTTCGACATCGGCGAGTAT 59.689 55.000 17.22 2.40 39.14 2.12
501 502 1.495574 GTCCTCCTCCACCTCTAGCTA 59.504 57.143 0.00 0.00 0.00 3.32
713 714 0.399454 CGGATCAATCAGCCCCTCAT 59.601 55.000 0.00 0.00 0.00 2.90
860 867 1.073125 GGATTTTTGGGTTGGGTTGGG 59.927 52.381 0.00 0.00 0.00 4.12
861 868 1.073125 GGGATTTTTGGGTTGGGTTGG 59.927 52.381 0.00 0.00 0.00 3.77
862 869 1.073125 GGGGATTTTTGGGTTGGGTTG 59.927 52.381 0.00 0.00 0.00 3.77
863 870 1.440618 GGGGATTTTTGGGTTGGGTT 58.559 50.000 0.00 0.00 0.00 4.11
864 871 0.474854 GGGGGATTTTTGGGTTGGGT 60.475 55.000 0.00 0.00 0.00 4.51
890 897 1.198408 GATTTCGGTTTGGGTTCGGAC 59.802 52.381 0.00 0.00 0.00 4.79
920 927 1.393487 GGAGGAGGAGGAAGGCGTAC 61.393 65.000 0.00 0.00 0.00 3.67
941 948 4.841617 ATGAGGGCGGCGAGGAGA 62.842 66.667 12.98 0.00 0.00 3.71
942 949 4.292178 GATGAGGGCGGCGAGGAG 62.292 72.222 12.98 0.00 0.00 3.69
944 951 3.466791 ATTGATGAGGGCGGCGAGG 62.467 63.158 12.98 0.00 0.00 4.63
1305 1312 1.752501 CGCGCATAGGAGACAAACGG 61.753 60.000 8.75 0.00 0.00 4.44
1308 1315 0.464036 ATCCGCGCATAGGAGACAAA 59.536 50.000 8.75 0.00 41.66 2.83
1313 1320 1.264288 GGAAAAATCCGCGCATAGGAG 59.736 52.381 8.75 0.00 41.66 3.69
1317 1324 3.191581 TGAAAAGGAAAAATCCGCGCATA 59.808 39.130 8.75 0.00 34.28 3.14
1318 1325 2.029470 TGAAAAGGAAAAATCCGCGCAT 60.029 40.909 8.75 0.00 34.28 4.73
1326 1336 7.135591 TCAAATCACCCTGAAAAGGAAAAAT 57.864 32.000 0.00 0.00 0.00 1.82
1332 1342 3.256631 CACCTCAAATCACCCTGAAAAGG 59.743 47.826 0.00 0.00 0.00 3.11
1333 1343 4.144297 TCACCTCAAATCACCCTGAAAAG 58.856 43.478 0.00 0.00 0.00 2.27
1338 1348 3.194116 CCAATTCACCTCAAATCACCCTG 59.806 47.826 0.00 0.00 0.00 4.45
1339 1349 3.075882 TCCAATTCACCTCAAATCACCCT 59.924 43.478 0.00 0.00 0.00 4.34
1352 1364 4.748102 CCATAGCAATTGCATCCAATTCAC 59.252 41.667 30.89 0.00 45.99 3.18
1374 1386 1.459450 TAAAGGAAACATGCTCCGCC 58.541 50.000 8.42 0.00 38.08 6.13
1424 1438 7.990886 ACAGTTAACTTGGACTAAATTCTCACA 59.009 33.333 5.07 0.00 0.00 3.58
1425 1439 8.379457 ACAGTTAACTTGGACTAAATTCTCAC 57.621 34.615 5.07 0.00 0.00 3.51
1498 1512 4.201851 ACTGGATTCAAGCGAAAATGATCG 60.202 41.667 0.00 0.00 45.41 3.69
1534 1548 5.354792 ACAAGCACAAATTGAACAAAGCAAT 59.645 32.000 0.00 0.00 37.56 3.56
1590 1604 3.107642 AGTCCGCATATTACCCGAAAG 57.892 47.619 0.00 0.00 0.00 2.62
1591 1605 3.547054 AAGTCCGCATATTACCCGAAA 57.453 42.857 0.00 0.00 0.00 3.46
1712 1727 0.971959 ATTCCAATGGCCACACGCAT 60.972 50.000 8.16 0.00 40.31 4.73
1725 1740 6.914654 TTGATCAGATCCACAAAATTCCAA 57.085 33.333 8.00 0.00 0.00 3.53
1776 1791 4.201851 CCAATAGAACTCAAGGCATGTTCG 60.202 45.833 0.00 0.00 43.19 3.95
1886 1901 5.669477 ACATGAAGTAGCTCCATTCTCTTC 58.331 41.667 0.00 0.00 34.02 2.87
1905 1920 3.242220 GCATGAAGCGAAGACACTACATG 60.242 47.826 0.00 0.00 37.50 3.21
2013 2028 3.664107 TGCTCACGCAGAAGATTAACTT 58.336 40.909 0.00 0.00 42.25 2.66
2094 2109 4.214119 GCTAGACACTCATCAAAAGCACAA 59.786 41.667 0.00 0.00 0.00 3.33
2116 2131 0.249238 CTCGAGCCACTGGATACTGC 60.249 60.000 0.00 0.00 39.52 4.40
2129 2144 0.742281 TGCAAGAATCTGGCTCGAGC 60.742 55.000 29.38 29.38 41.14 5.03
2152 2167 7.721399 GGAAAAGCTGATAAGAATAGAATCCCA 59.279 37.037 0.00 0.00 0.00 4.37
2160 2175 9.479549 AATTGGAAGGAAAAGCTGATAAGAATA 57.520 29.630 0.00 0.00 0.00 1.75
2163 2178 7.781324 AAATTGGAAGGAAAAGCTGATAAGA 57.219 32.000 0.00 0.00 0.00 2.10
2167 2182 9.875691 GTATAAAAATTGGAAGGAAAAGCTGAT 57.124 29.630 0.00 0.00 0.00 2.90
2288 2303 4.779819 GCCAAGAGCAGCAATTCG 57.220 55.556 0.00 0.00 42.97 3.34
2343 2358 6.256104 TGATTTCATTGCAGTGTTGAAAGTTG 59.744 34.615 9.23 0.00 41.24 3.16
2373 2388 8.743085 AGTAAATAACAGATCATGTGATGCTT 57.257 30.769 0.00 0.00 43.00 3.91
2402 2417 8.864087 AGAAATCTTAGAATGCAAGGTTTTCTT 58.136 29.630 4.91 0.00 36.65 2.52
2425 2499 7.615365 AGCATGGATAAGTTCACCAAATAAGAA 59.385 33.333 0.00 0.00 37.24 2.52
2509 2585 1.163408 TTTGGCCCCTAAGAAACCCT 58.837 50.000 0.00 0.00 0.00 4.34
2587 2663 1.544314 GCTTTGACAGGTGCCTTCTCT 60.544 52.381 0.00 0.00 0.00 3.10
2687 2763 0.903236 AGCTGCTGCATGAGAAGAGA 59.097 50.000 18.42 0.00 42.74 3.10
2699 2775 1.370609 CTGAGATCCACAAGCTGCTG 58.629 55.000 1.35 0.00 0.00 4.41
2721 2797 2.907042 AGGTTAGAGCTTTGCTGGTAGT 59.093 45.455 0.00 0.00 39.88 2.73
2764 2840 3.074412 CTGTTCCATTACTTGAAGGCGT 58.926 45.455 0.00 0.00 0.00 5.68
2813 2889 1.697432 AGGGTTCTGGACAACGATTGA 59.303 47.619 0.00 0.00 0.00 2.57
2879 2955 1.490490 TCCATCCTCATACCAGTTGGC 59.510 52.381 0.00 0.00 39.32 4.52
2880 2956 3.931907 TTCCATCCTCATACCAGTTGG 57.068 47.619 0.00 0.00 42.17 3.77
2881 2957 4.588899 TGTTTCCATCCTCATACCAGTTG 58.411 43.478 0.00 0.00 0.00 3.16
2887 2963 6.659242 TCCTTTTCTTGTTTCCATCCTCATAC 59.341 38.462 0.00 0.00 0.00 2.39
2948 3027 2.992689 TGCGCCAGAAGTCCCGTA 60.993 61.111 4.18 0.00 0.00 4.02
2952 3031 3.706373 TCCCTGCGCCAGAAGTCC 61.706 66.667 4.18 0.00 32.44 3.85
2997 3076 0.991920 TGGGCTAGAAGTTTCAGGGG 59.008 55.000 0.00 0.00 0.00 4.79
3015 3094 8.246180 ACAAAAATGCTTCATCTGGTATTACTG 58.754 33.333 0.00 0.00 0.00 2.74
3023 3102 3.504863 CCGACAAAAATGCTTCATCTGG 58.495 45.455 0.00 0.00 0.00 3.86
3050 3129 2.810400 CGGGACTTGAGATTGGTTGTGT 60.810 50.000 0.00 0.00 0.00 3.72
3070 3149 0.101040 CCATGGGCATGTTAAGTGCG 59.899 55.000 2.85 0.00 43.40 5.34
3094 3173 0.593008 CCGACGTCGTTTGAGTGTCA 60.593 55.000 33.49 0.00 37.74 3.58
3109 3188 0.935196 GTGTGTTGAGGTTGTCCGAC 59.065 55.000 0.00 0.00 39.05 4.79
3139 3218 2.380064 TGTCAGCAAAAATGTCCCCT 57.620 45.000 0.00 0.00 0.00 4.79
3181 3260 1.887854 CCAAACCACAGATGCATGTCA 59.112 47.619 2.46 0.00 0.00 3.58
3200 3279 2.353610 TAGGTTCCCCGTCTTCGCC 61.354 63.158 0.00 0.00 35.12 5.54
3258 3337 1.554160 CTTCCATCTGACAGTCCTGCT 59.446 52.381 1.59 0.00 0.00 4.24
3324 3403 6.882610 AGAACAGAAACATTCAGCATACAA 57.117 33.333 0.00 0.00 0.00 2.41
3329 3408 6.455360 AAAGAAGAACAGAAACATTCAGCA 57.545 33.333 0.00 0.00 0.00 4.41
3332 3411 7.489113 GCAGAAAAAGAAGAACAGAAACATTCA 59.511 33.333 0.00 0.00 0.00 2.57
3362 3441 3.309138 CACAGAATACAGTCTCTGCATGC 59.691 47.826 11.82 11.82 42.39 4.06
3371 3450 9.751542 ATATTAGCAGTTACACAGAATACAGTC 57.248 33.333 0.00 0.00 0.00 3.51
3382 3461 8.657074 TGGACATACAATATTAGCAGTTACAC 57.343 34.615 0.00 0.00 0.00 2.90
3387 3466 8.383318 GTCATTGGACATACAATATTAGCAGT 57.617 34.615 0.00 0.00 43.73 4.40
3433 3512 5.422331 TCCTACTAATCTGAACTCCACTTGG 59.578 44.000 0.00 0.00 0.00 3.61
3464 3543 9.178758 AGAAGGAAATGACATGGTATAAACTTC 57.821 33.333 0.00 3.94 0.00 3.01
3512 3594 6.768861 ACCATAACATAATAAGCAGGCGTTAA 59.231 34.615 0.00 0.00 0.00 2.01
3514 3596 5.008613 CACCATAACATAATAAGCAGGCGTT 59.991 40.000 0.00 0.00 0.00 4.84
3515 3597 4.515191 CACCATAACATAATAAGCAGGCGT 59.485 41.667 0.00 0.00 0.00 5.68
3517 3599 6.263168 AGAACACCATAACATAATAAGCAGGC 59.737 38.462 0.00 0.00 0.00 4.85
3518 3600 7.642669 CAGAACACCATAACATAATAAGCAGG 58.357 38.462 0.00 0.00 0.00 4.85
3519 3601 7.012704 AGCAGAACACCATAACATAATAAGCAG 59.987 37.037 0.00 0.00 0.00 4.24
3520 3602 6.828273 AGCAGAACACCATAACATAATAAGCA 59.172 34.615 0.00 0.00 0.00 3.91
3521 3603 7.264373 AGCAGAACACCATAACATAATAAGC 57.736 36.000 0.00 0.00 0.00 3.09
3522 3604 9.547753 AGTAGCAGAACACCATAACATAATAAG 57.452 33.333 0.00 0.00 0.00 1.73
3525 3607 9.712305 GATAGTAGCAGAACACCATAACATAAT 57.288 33.333 0.00 0.00 0.00 1.28
3526 3608 8.924303 AGATAGTAGCAGAACACCATAACATAA 58.076 33.333 0.00 0.00 0.00 1.90
3527 3609 8.478775 AGATAGTAGCAGAACACCATAACATA 57.521 34.615 0.00 0.00 0.00 2.29
3528 3610 7.069950 TGAGATAGTAGCAGAACACCATAACAT 59.930 37.037 0.00 0.00 0.00 2.71
3556 3756 8.864069 AAGTGAGTCAGATTTGTATAGAATCG 57.136 34.615 0.00 0.00 38.29 3.34
3599 3799 4.384098 CCACCACCTATGCTTCAGTTATGA 60.384 45.833 0.00 0.00 0.00 2.15
3636 3836 2.097466 CCTAAAGTAATGTTGCTGCCCG 59.903 50.000 0.00 0.00 0.00 6.13
3649 3849 3.896888 TGGACCGTTCTGAACCTAAAGTA 59.103 43.478 14.48 0.00 0.00 2.24
3650 3850 2.701951 TGGACCGTTCTGAACCTAAAGT 59.298 45.455 14.48 5.02 0.00 2.66
3651 3851 3.396260 TGGACCGTTCTGAACCTAAAG 57.604 47.619 14.48 0.65 0.00 1.85
3652 3852 5.486735 TTATGGACCGTTCTGAACCTAAA 57.513 39.130 14.48 0.00 0.00 1.85
3653 3853 5.486735 TTTATGGACCGTTCTGAACCTAA 57.513 39.130 14.48 1.89 0.00 2.69
3661 3861 4.941873 GGTGATCTTTTTATGGACCGTTCT 59.058 41.667 0.00 0.00 0.00 3.01
3662 3862 4.698304 TGGTGATCTTTTTATGGACCGTTC 59.302 41.667 0.00 0.00 0.00 3.95
3665 3865 5.835113 AATGGTGATCTTTTTATGGACCG 57.165 39.130 0.00 0.00 0.00 4.79
3693 3893 9.112725 GGGTACAAAGTAACTTTCAGTAAAGAA 57.887 33.333 4.95 0.00 44.14 2.52
3695 3895 7.040892 GGGGGTACAAAGTAACTTTCAGTAAAG 60.041 40.741 0.00 0.00 46.34 1.85
3713 3913 6.183360 CGTATTGAAATCTCTAAGGGGGTACA 60.183 42.308 0.00 0.00 0.00 2.90
3717 3917 4.347000 TCCGTATTGAAATCTCTAAGGGGG 59.653 45.833 0.00 0.00 0.00 5.40
3718 3918 5.070580 AGTCCGTATTGAAATCTCTAAGGGG 59.929 44.000 0.00 0.00 0.00 4.79
3719 3919 6.163135 AGTCCGTATTGAAATCTCTAAGGG 57.837 41.667 0.00 0.00 0.00 3.95
3720 3920 7.713750 TGTAGTCCGTATTGAAATCTCTAAGG 58.286 38.462 0.00 0.00 0.00 2.69
3723 3923 8.501580 CGTATGTAGTCCGTATTGAAATCTCTA 58.498 37.037 0.00 0.00 0.00 2.43
3724 3924 7.361127 CGTATGTAGTCCGTATTGAAATCTCT 58.639 38.462 0.00 0.00 0.00 3.10
3725 3925 6.581542 CCGTATGTAGTCCGTATTGAAATCTC 59.418 42.308 0.00 0.00 0.00 2.75
3726 3926 6.263842 TCCGTATGTAGTCCGTATTGAAATCT 59.736 38.462 0.00 0.00 0.00 2.40
3727 3927 6.441274 TCCGTATGTAGTCCGTATTGAAATC 58.559 40.000 0.00 0.00 0.00 2.17
3728 3928 6.395426 TCCGTATGTAGTCCGTATTGAAAT 57.605 37.500 0.00 0.00 0.00 2.17
3729 3929 5.833406 TCCGTATGTAGTCCGTATTGAAA 57.167 39.130 0.00 0.00 0.00 2.69
3730 3930 5.300034 ACATCCGTATGTAGTCCGTATTGAA 59.700 40.000 0.00 0.00 44.66 2.69
3731 3931 4.823442 ACATCCGTATGTAGTCCGTATTGA 59.177 41.667 0.00 0.00 44.66 2.57
3732 3932 5.117355 ACATCCGTATGTAGTCCGTATTG 57.883 43.478 0.00 0.00 44.66 1.90
3745 3945 5.386958 AATGCGTCTACATACATCCGTAT 57.613 39.130 0.00 0.00 38.96 3.06
3746 3946 4.841443 AATGCGTCTACATACATCCGTA 57.159 40.909 0.00 0.00 0.00 4.02
3747 3947 3.728076 AATGCGTCTACATACATCCGT 57.272 42.857 0.00 0.00 0.00 4.69
3748 3948 5.918576 TCTAAAATGCGTCTACATACATCCG 59.081 40.000 0.00 0.00 0.00 4.18
3749 3949 6.924060 ACTCTAAAATGCGTCTACATACATCC 59.076 38.462 0.00 0.00 0.00 3.51
3750 3950 7.435488 ACACTCTAAAATGCGTCTACATACATC 59.565 37.037 0.00 0.00 0.00 3.06
3751 3951 7.265673 ACACTCTAAAATGCGTCTACATACAT 58.734 34.615 0.00 0.00 0.00 2.29
3752 3952 6.627243 ACACTCTAAAATGCGTCTACATACA 58.373 36.000 0.00 0.00 0.00 2.29
3753 3953 8.127327 TCTACACTCTAAAATGCGTCTACATAC 58.873 37.037 0.00 0.00 0.00 2.39
3754 3954 8.217131 TCTACACTCTAAAATGCGTCTACATA 57.783 34.615 0.00 0.00 0.00 2.29
3755 3955 7.096884 TCTACACTCTAAAATGCGTCTACAT 57.903 36.000 0.00 0.00 0.00 2.29
3756 3956 6.150641 ACTCTACACTCTAAAATGCGTCTACA 59.849 38.462 0.00 0.00 0.00 2.74
3757 3957 6.553524 ACTCTACACTCTAAAATGCGTCTAC 58.446 40.000 0.00 0.00 0.00 2.59
3758 3958 6.754702 ACTCTACACTCTAAAATGCGTCTA 57.245 37.500 0.00 0.00 0.00 2.59
3759 3959 5.646577 ACTCTACACTCTAAAATGCGTCT 57.353 39.130 0.00 0.00 0.00 4.18
3760 3960 7.028361 AGTAACTCTACACTCTAAAATGCGTC 58.972 38.462 0.00 0.00 0.00 5.19
3761 3961 6.921914 AGTAACTCTACACTCTAAAATGCGT 58.078 36.000 0.00 0.00 0.00 5.24
3762 3962 7.027760 TGAGTAACTCTACACTCTAAAATGCG 58.972 38.462 3.65 0.00 41.46 4.73
3763 3963 8.934507 ATGAGTAACTCTACACTCTAAAATGC 57.065 34.615 3.65 0.00 41.46 3.56
3767 3967 9.924650 GGAAAATGAGTAACTCTACACTCTAAA 57.075 33.333 3.65 0.00 41.46 1.85
3768 3968 9.310449 AGGAAAATGAGTAACTCTACACTCTAA 57.690 33.333 3.65 0.00 41.46 2.10
3769 3969 8.880991 AGGAAAATGAGTAACTCTACACTCTA 57.119 34.615 3.65 0.00 41.46 2.43
3770 3970 7.093684 GGAGGAAAATGAGTAACTCTACACTCT 60.094 40.741 3.65 0.00 41.46 3.24
3771 3971 7.036829 GGAGGAAAATGAGTAACTCTACACTC 58.963 42.308 0.00 0.00 41.31 3.51
3772 3972 6.350277 CGGAGGAAAATGAGTAACTCTACACT 60.350 42.308 0.00 0.00 0.00 3.55
3773 3973 5.805994 CGGAGGAAAATGAGTAACTCTACAC 59.194 44.000 0.00 0.00 0.00 2.90
3774 3974 5.479375 ACGGAGGAAAATGAGTAACTCTACA 59.521 40.000 0.00 0.00 0.00 2.74
3775 3975 5.963594 ACGGAGGAAAATGAGTAACTCTAC 58.036 41.667 0.00 0.00 0.00 2.59
3776 3976 7.893124 ATACGGAGGAAAATGAGTAACTCTA 57.107 36.000 0.00 0.00 0.00 2.43
3777 3977 6.793505 ATACGGAGGAAAATGAGTAACTCT 57.206 37.500 0.00 0.00 0.00 3.24
3778 3978 9.843334 CTATATACGGAGGAAAATGAGTAACTC 57.157 37.037 0.00 0.00 0.00 3.01
3779 3979 9.364653 ACTATATACGGAGGAAAATGAGTAACT 57.635 33.333 0.00 0.00 0.00 2.24
3780 3980 9.623350 GACTATATACGGAGGAAAATGAGTAAC 57.377 37.037 0.00 0.00 0.00 2.50
3781 3981 9.584008 AGACTATATACGGAGGAAAATGAGTAA 57.416 33.333 0.00 0.00 0.00 2.24
3783 3983 9.012161 GTAGACTATATACGGAGGAAAATGAGT 57.988 37.037 0.00 0.00 0.00 3.41
3784 3984 9.011095 TGTAGACTATATACGGAGGAAAATGAG 57.989 37.037 0.00 0.00 0.00 2.90
3785 3985 8.929260 TGTAGACTATATACGGAGGAAAATGA 57.071 34.615 0.00 0.00 0.00 2.57
3788 3988 8.582437 CCAATGTAGACTATATACGGAGGAAAA 58.418 37.037 2.92 0.00 0.00 2.29
3789 3989 7.946219 TCCAATGTAGACTATATACGGAGGAAA 59.054 37.037 6.32 0.00 0.00 3.13
3790 3990 7.464273 TCCAATGTAGACTATATACGGAGGAA 58.536 38.462 6.32 0.00 0.00 3.36
3791 3991 7.024345 TCCAATGTAGACTATATACGGAGGA 57.976 40.000 6.32 0.00 0.00 3.71
3792 3992 7.698506 TTCCAATGTAGACTATATACGGAGG 57.301 40.000 9.08 0.00 0.00 4.30
3793 3993 9.179909 AGATTCCAATGTAGACTATATACGGAG 57.820 37.037 9.08 0.00 0.00 4.63
3794 3994 9.175312 GAGATTCCAATGTAGACTATATACGGA 57.825 37.037 6.32 6.32 0.00 4.69
3795 3995 9.179909 AGAGATTCCAATGTAGACTATATACGG 57.820 37.037 0.00 0.00 0.00 4.02
3805 4005 9.507329 GCCATTTTATAGAGATTCCAATGTAGA 57.493 33.333 0.00 0.00 0.00 2.59
3806 4006 9.512588 AGCCATTTTATAGAGATTCCAATGTAG 57.487 33.333 0.00 0.00 0.00 2.74
3807 4007 9.866655 AAGCCATTTTATAGAGATTCCAATGTA 57.133 29.630 0.00 0.00 0.00 2.29
3808 4008 8.773033 AAGCCATTTTATAGAGATTCCAATGT 57.227 30.769 0.00 0.00 0.00 2.71
3822 4022 9.802039 TCCGTTCCTAAATATAAGCCATTTTAT 57.198 29.630 0.00 0.00 0.00 1.40
3823 4023 9.280174 CTCCGTTCCTAAATATAAGCCATTTTA 57.720 33.333 0.00 0.00 0.00 1.52
3824 4024 7.230712 CCTCCGTTCCTAAATATAAGCCATTTT 59.769 37.037 0.00 0.00 0.00 1.82
3825 4025 6.715264 CCTCCGTTCCTAAATATAAGCCATTT 59.285 38.462 0.00 0.00 0.00 2.32
3826 4026 6.238648 CCTCCGTTCCTAAATATAAGCCATT 58.761 40.000 0.00 0.00 0.00 3.16
3827 4027 5.280521 CCCTCCGTTCCTAAATATAAGCCAT 60.281 44.000 0.00 0.00 0.00 4.40
3828 4028 4.041198 CCCTCCGTTCCTAAATATAAGCCA 59.959 45.833 0.00 0.00 0.00 4.75
3829 4029 4.285260 TCCCTCCGTTCCTAAATATAAGCC 59.715 45.833 0.00 0.00 0.00 4.35
3830 4030 5.011840 ACTCCCTCCGTTCCTAAATATAAGC 59.988 44.000 0.00 0.00 0.00 3.09
3831 4031 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3832 4032 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3833 4033 8.591072 CAAATACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
3834 4034 7.450903 CAAATACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
3835 4035 6.687139 GCAAATACTCCCTCCGTTCCTAAATA 60.687 42.308 0.00 0.00 0.00 1.40
3836 4036 5.681639 CAAATACTCCCTCCGTTCCTAAAT 58.318 41.667 0.00 0.00 0.00 1.40
3837 4037 4.624604 GCAAATACTCCCTCCGTTCCTAAA 60.625 45.833 0.00 0.00 0.00 1.85
3838 4038 3.118519 GCAAATACTCCCTCCGTTCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
3839 4039 2.433239 GCAAATACTCCCTCCGTTCCTA 59.567 50.000 0.00 0.00 0.00 2.94
3840 4040 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
3841 4041 1.209747 AGCAAATACTCCCTCCGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
3842 4042 2.093658 TCAGCAAATACTCCCTCCGTTC 60.094 50.000 0.00 0.00 0.00 3.95
3843 4043 1.906574 TCAGCAAATACTCCCTCCGTT 59.093 47.619 0.00 0.00 0.00 4.44
3844 4044 1.568504 TCAGCAAATACTCCCTCCGT 58.431 50.000 0.00 0.00 0.00 4.69
3845 4045 2.280628 GTTCAGCAAATACTCCCTCCG 58.719 52.381 0.00 0.00 0.00 4.63
3846 4046 3.274288 CTGTTCAGCAAATACTCCCTCC 58.726 50.000 0.00 0.00 0.00 4.30
3847 4047 3.055094 TCCTGTTCAGCAAATACTCCCTC 60.055 47.826 0.00 0.00 0.00 4.30
3848 4048 2.912956 TCCTGTTCAGCAAATACTCCCT 59.087 45.455 0.00 0.00 0.00 4.20
3849 4049 3.010420 GTCCTGTTCAGCAAATACTCCC 58.990 50.000 0.00 0.00 0.00 4.30
3850 4050 3.674997 TGTCCTGTTCAGCAAATACTCC 58.325 45.455 0.00 0.00 0.00 3.85
3851 4051 5.689383 TTTGTCCTGTTCAGCAAATACTC 57.311 39.130 0.00 0.00 0.00 2.59
3852 4052 5.505654 CGTTTTGTCCTGTTCAGCAAATACT 60.506 40.000 6.49 0.00 31.99 2.12
3853 4053 4.675114 CGTTTTGTCCTGTTCAGCAAATAC 59.325 41.667 6.49 7.00 31.99 1.89
3854 4054 4.791411 GCGTTTTGTCCTGTTCAGCAAATA 60.791 41.667 6.49 0.00 31.99 1.40
3855 4055 3.705604 CGTTTTGTCCTGTTCAGCAAAT 58.294 40.909 6.49 0.00 31.99 2.32
3862 4062 0.380378 TGCTGCGTTTTGTCCTGTTC 59.620 50.000 0.00 0.00 0.00 3.18
3868 4068 1.597663 ACTACACTGCTGCGTTTTGTC 59.402 47.619 0.00 0.00 0.00 3.18
3875 4075 1.391485 CTGCTAAACTACACTGCTGCG 59.609 52.381 0.00 0.00 0.00 5.18
3881 4081 8.582437 TGACATTAGTAACTGCTAAACTACACT 58.418 33.333 0.00 0.00 34.98 3.55
3887 4087 8.703604 TCTGATGACATTAGTAACTGCTAAAC 57.296 34.615 7.07 0.00 34.98 2.01
3911 4111 9.403110 GGCATCAAATTGAACATGACTATATTC 57.597 33.333 0.00 0.00 0.00 1.75
3918 4118 4.989797 TGTTGGCATCAAATTGAACATGAC 59.010 37.500 0.00 0.00 34.28 3.06
3935 4135 1.134848 TCCTGTTTTGTGCTTGTTGGC 60.135 47.619 0.00 0.00 0.00 4.52
3971 4178 9.237846 GTAAAACATCTAAATAATGCTGCCTTC 57.762 33.333 0.00 0.00 0.00 3.46
3975 4182 7.488322 TGGGTAAAACATCTAAATAATGCTGC 58.512 34.615 0.00 0.00 0.00 5.25
3977 4184 8.197439 GCTTGGGTAAAACATCTAAATAATGCT 58.803 33.333 0.00 0.00 0.00 3.79
3993 4230 1.557832 AGGCGAGTATGCTTGGGTAAA 59.442 47.619 0.00 0.00 34.52 2.01
3995 4232 0.464036 CAGGCGAGTATGCTTGGGTA 59.536 55.000 0.00 0.00 38.21 3.69
3997 4234 0.107456 ATCAGGCGAGTATGCTTGGG 59.893 55.000 0.00 0.00 41.79 4.12
3998 4235 2.820059 TATCAGGCGAGTATGCTTGG 57.180 50.000 0.00 0.00 41.79 3.61
3999 4236 4.309933 TGAATATCAGGCGAGTATGCTTG 58.690 43.478 0.00 0.00 42.74 4.01
4002 4239 4.511454 TGTTTGAATATCAGGCGAGTATGC 59.489 41.667 0.00 0.00 0.00 3.14
4003 4240 6.422223 GTTGTTTGAATATCAGGCGAGTATG 58.578 40.000 0.00 0.00 0.00 2.39
4004 4241 5.527582 GGTTGTTTGAATATCAGGCGAGTAT 59.472 40.000 0.00 0.00 0.00 2.12
4007 4244 3.941483 AGGTTGTTTGAATATCAGGCGAG 59.059 43.478 0.00 0.00 0.00 5.03
4008 4245 3.950397 AGGTTGTTTGAATATCAGGCGA 58.050 40.909 0.00 0.00 0.00 5.54
4009 4246 6.201517 CAATAGGTTGTTTGAATATCAGGCG 58.798 40.000 0.00 0.00 0.00 5.52
4010 4247 6.507023 CCAATAGGTTGTTTGAATATCAGGC 58.493 40.000 0.00 0.00 33.36 4.85
4011 4248 6.507023 GCCAATAGGTTGTTTGAATATCAGG 58.493 40.000 0.00 0.00 37.19 3.86
4012 4249 6.038161 TCGCCAATAGGTTGTTTGAATATCAG 59.962 38.462 0.00 0.00 37.19 2.90
4014 4251 6.371809 TCGCCAATAGGTTGTTTGAATATC 57.628 37.500 0.00 0.00 37.19 1.63
4015 4252 6.959639 ATCGCCAATAGGTTGTTTGAATAT 57.040 33.333 0.00 0.00 37.19 1.28
4017 4254 5.221048 GCTATCGCCAATAGGTTGTTTGAAT 60.221 40.000 3.64 0.00 38.26 2.57
4020 4257 3.376859 TGCTATCGCCAATAGGTTGTTTG 59.623 43.478 3.64 0.00 38.26 2.93
4021 4258 3.377172 GTGCTATCGCCAATAGGTTGTTT 59.623 43.478 3.64 0.00 38.26 2.83
4026 4263 3.560636 AAAGTGCTATCGCCAATAGGT 57.439 42.857 3.64 0.00 38.26 3.08
4027 4264 4.814234 TGTTAAAGTGCTATCGCCAATAGG 59.186 41.667 3.64 0.00 38.26 2.57
4028 4265 5.984233 TGTTAAAGTGCTATCGCCAATAG 57.016 39.130 0.00 0.00 40.42 1.73
4030 4267 4.881273 TCATGTTAAAGTGCTATCGCCAAT 59.119 37.500 0.00 0.00 34.43 3.16
4031 4268 4.257731 TCATGTTAAAGTGCTATCGCCAA 58.742 39.130 0.00 0.00 34.43 4.52
4032 4269 3.867857 TCATGTTAAAGTGCTATCGCCA 58.132 40.909 0.00 0.00 34.43 5.69
4034 4271 6.292389 AGAATCATGTTAAAGTGCTATCGC 57.708 37.500 0.00 0.00 0.00 4.58
4035 4272 9.003112 CAAAAGAATCATGTTAAAGTGCTATCG 57.997 33.333 0.00 0.00 0.00 2.92
4036 4273 8.801913 GCAAAAGAATCATGTTAAAGTGCTATC 58.198 33.333 0.00 0.00 0.00 2.08
4037 4274 7.485913 CGCAAAAGAATCATGTTAAAGTGCTAT 59.514 33.333 0.00 0.00 0.00 2.97
4039 4276 5.630680 CGCAAAAGAATCATGTTAAAGTGCT 59.369 36.000 0.00 0.00 0.00 4.40
4041 4278 7.801547 ATCGCAAAAGAATCATGTTAAAGTG 57.198 32.000 0.00 0.00 0.00 3.16
4048 4295 8.993121 CCTAATACTATCGCAAAAGAATCATGT 58.007 33.333 0.00 0.00 0.00 3.21
4058 4305 4.272504 GCAGCAACCTAATACTATCGCAAA 59.727 41.667 0.00 0.00 0.00 3.68
4063 4310 3.748568 GGCAGCAGCAACCTAATACTATC 59.251 47.826 2.65 0.00 44.61 2.08
4097 4344 6.439375 TGTGAAGGCCAATAAGACTAACTCTA 59.561 38.462 5.01 0.00 0.00 2.43
4107 4354 8.632679 ACAAATATGTATGTGAAGGCCAATAAG 58.367 33.333 5.01 0.00 38.24 1.73
4108 4355 8.532186 ACAAATATGTATGTGAAGGCCAATAA 57.468 30.769 5.01 0.00 38.24 1.40
4110 4357 8.413229 GTTACAAATATGTATGTGAAGGCCAAT 58.587 33.333 5.01 0.00 41.51 3.16
4111 4358 7.147983 GGTTACAAATATGTATGTGAAGGCCAA 60.148 37.037 5.01 0.00 41.51 4.52
4112 4359 6.320164 GGTTACAAATATGTATGTGAAGGCCA 59.680 38.462 5.01 0.00 41.51 5.36
4113 4360 6.546034 AGGTTACAAATATGTATGTGAAGGCC 59.454 38.462 0.00 0.00 41.51 5.19
4151 4416 1.549170 ACTAGAGTACAACCAAGCGGG 59.451 52.381 0.00 0.00 44.81 6.13
4163 4428 9.483489 TCATCCCAAAATAAGTGTACTAGAGTA 57.517 33.333 0.00 0.00 0.00 2.59
4164 4429 8.375493 TCATCCCAAAATAAGTGTACTAGAGT 57.625 34.615 0.00 0.00 0.00 3.24
4165 4430 9.319143 CTTCATCCCAAAATAAGTGTACTAGAG 57.681 37.037 0.00 0.00 0.00 2.43
4167 4432 7.499232 CCCTTCATCCCAAAATAAGTGTACTAG 59.501 40.741 0.00 0.00 0.00 2.57
4168 4433 7.343357 CCCTTCATCCCAAAATAAGTGTACTA 58.657 38.462 0.00 0.00 0.00 1.82
4170 4435 5.359860 CCCCTTCATCCCAAAATAAGTGTAC 59.640 44.000 0.00 0.00 0.00 2.90
4171 4436 5.515106 CCCCTTCATCCCAAAATAAGTGTA 58.485 41.667 0.00 0.00 0.00 2.90
4172 4437 4.352893 CCCCTTCATCCCAAAATAAGTGT 58.647 43.478 0.00 0.00 0.00 3.55
4175 4440 3.994317 ACCCCCTTCATCCCAAAATAAG 58.006 45.455 0.00 0.00 0.00 1.73
4178 4443 2.247372 CCTACCCCCTTCATCCCAAAAT 59.753 50.000 0.00 0.00 0.00 1.82
4179 4444 1.643811 CCTACCCCCTTCATCCCAAAA 59.356 52.381 0.00 0.00 0.00 2.44
4182 4447 0.122435 AACCTACCCCCTTCATCCCA 59.878 55.000 0.00 0.00 0.00 4.37
4183 4448 0.844660 GAACCTACCCCCTTCATCCC 59.155 60.000 0.00 0.00 0.00 3.85
4184 4449 1.490910 CTGAACCTACCCCCTTCATCC 59.509 57.143 0.00 0.00 0.00 3.51
4186 4451 2.361085 ACTGAACCTACCCCCTTCAT 57.639 50.000 0.00 0.00 0.00 2.57
4187 4452 2.107552 CAAACTGAACCTACCCCCTTCA 59.892 50.000 0.00 0.00 0.00 3.02
4189 4454 2.424793 TCAAACTGAACCTACCCCCTT 58.575 47.619 0.00 0.00 0.00 3.95
4192 4457 2.092323 GCATCAAACTGAACCTACCCC 58.908 52.381 0.00 0.00 0.00 4.95
4193 4458 2.749621 CAGCATCAAACTGAACCTACCC 59.250 50.000 0.00 0.00 37.32 3.69
4194 4459 3.437049 GTCAGCATCAAACTGAACCTACC 59.563 47.826 0.00 0.00 45.32 3.18
4195 4460 4.319177 AGTCAGCATCAAACTGAACCTAC 58.681 43.478 0.00 0.00 45.32 3.18
4232 4497 4.385825 ACAAAACTGATTGCTTCCGACTA 58.614 39.130 0.00 0.00 33.52 2.59
4242 4507 4.853924 AGCCCTACAACAAAACTGATTG 57.146 40.909 0.00 0.00 36.37 2.67
4248 4513 4.379339 TTGTCAAGCCCTACAACAAAAC 57.621 40.909 0.00 0.00 30.88 2.43
4254 4519 4.521256 GGTAACATTTGTCAAGCCCTACAA 59.479 41.667 0.00 0.00 33.92 2.41
4268 4533 8.051901 GGCAACTGAATTAGTAGGTAACATTT 57.948 34.615 0.00 0.00 39.18 2.32
4298 4565 2.479566 TGATCACCCAGAAGCTGAAC 57.520 50.000 0.00 0.00 32.44 3.18
4333 4600 2.124570 GCCCACCTCACGCATCAT 60.125 61.111 0.00 0.00 0.00 2.45
4374 4641 2.492881 ACTCTGATGACTCTGAGCACAG 59.507 50.000 4.57 4.57 46.13 3.66
4387 4654 6.600350 GCATTTGCTATATGACACTCTGATG 58.400 40.000 0.00 0.00 38.21 3.07
4388 4655 6.798315 GCATTTGCTATATGACACTCTGAT 57.202 37.500 0.00 0.00 38.21 2.90
4406 4673 6.560253 ACAGTTAATGTCTTTCGAGCATTT 57.440 33.333 10.31 0.00 37.75 2.32
4439 4706 6.237808 CCGAAAAACAACAAAAGAATCCTGTG 60.238 38.462 0.00 0.00 0.00 3.66
4479 4747 0.442699 GAGTAGGGTCGCGCAAAAAG 59.557 55.000 8.75 0.00 0.00 2.27
4484 4752 3.138798 GGAGAGTAGGGTCGCGCA 61.139 66.667 8.75 0.00 0.00 6.09
4489 4757 2.535836 AGGACAAGGAGAGTAGGGTC 57.464 55.000 0.00 0.00 0.00 4.46
4519 4787 4.293415 GAGTGAATTTCAGTTGTTGGCTG 58.707 43.478 8.12 0.00 28.50 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.