Multiple sequence alignment - TraesCS4A01G062400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G062400 chr4A 100.000 6071 0 0 1 6071 59229839 59235909 0.000000e+00 11212.0
1 TraesCS4A01G062400 chr4A 93.872 359 20 2 5461 5818 59240588 59240945 1.930000e-149 540.0
2 TraesCS4A01G062400 chr4A 86.408 103 12 2 2274 2374 685838819 685838921 1.790000e-20 111.0
3 TraesCS4A01G062400 chr4D 95.105 1716 55 18 579 2274 417806940 417808646 0.000000e+00 2676.0
4 TraesCS4A01G062400 chr4D 95.261 1456 51 9 830 2274 401366519 401367967 0.000000e+00 2290.0
5 TraesCS4A01G062400 chr4D 91.489 1457 91 20 4017 5454 401369688 401371130 0.000000e+00 1973.0
6 TraesCS4A01G062400 chr4D 85.981 1284 90 41 2732 3997 417809038 417810249 0.000000e+00 1291.0
7 TraesCS4A01G062400 chr4D 88.454 1022 77 17 2857 3876 401368551 401369533 0.000000e+00 1195.0
8 TraesCS4A01G062400 chr4D 92.720 783 46 7 4023 4799 417810239 417811016 0.000000e+00 1120.0
9 TraesCS4A01G062400 chr4D 89.618 655 43 13 4804 5454 417811055 417811688 0.000000e+00 809.0
10 TraesCS4A01G062400 chr4D 85.903 454 30 12 2423 2843 401367970 401368422 2.580000e-123 453.0
11 TraesCS4A01G062400 chr4D 96.581 234 8 0 2 235 401353546 401353313 7.380000e-104 388.0
12 TraesCS4A01G062400 chr4D 95.726 234 9 1 2 235 417794868 417795100 5.740000e-100 375.0
13 TraesCS4A01G062400 chr4D 86.466 266 23 7 2423 2675 200996502 200996237 4.630000e-71 279.0
14 TraesCS4A01G062400 chr4D 88.186 237 12 10 471 694 401351674 401351441 1.000000e-67 268.0
15 TraesCS4A01G062400 chr4D 77.540 374 34 19 2423 2746 417808649 417809022 4.830000e-41 180.0
16 TraesCS4A01G062400 chr4D 91.736 121 7 3 716 834 401361126 401361245 1.350000e-36 165.0
17 TraesCS4A01G062400 chr4D 88.696 115 11 2 3884 3997 401369591 401369704 8.210000e-29 139.0
18 TraesCS4A01G062400 chr4D 100.000 35 0 0 2240 2274 200996539 200996505 1.410000e-06 65.8
19 TraesCS4A01G062400 chr4B 92.792 1748 67 27 565 2274 496421174 496422900 0.000000e+00 2475.0
20 TraesCS4A01G062400 chr4B 91.179 1247 62 21 4255 5460 496424443 496425682 0.000000e+00 1650.0
21 TraesCS4A01G062400 chr4B 86.708 805 57 16 2842 3630 496423415 496424185 0.000000e+00 848.0
22 TraesCS4A01G062400 chr4B 82.013 467 38 22 2423 2843 496422903 496423369 7.480000e-94 355.0
23 TraesCS4A01G062400 chr5B 87.076 1091 76 29 2783 3853 687363608 687362563 0.000000e+00 1173.0
24 TraesCS4A01G062400 chr5B 86.068 1091 87 32 2783 3853 683038488 683039533 0.000000e+00 1112.0
25 TraesCS4A01G062400 chr5B 92.795 458 32 1 4255 4712 687362255 687361799 0.000000e+00 662.0
26 TraesCS4A01G062400 chr5B 91.503 459 36 3 4255 4712 683039859 683040315 3.990000e-176 628.0
27 TraesCS4A01G062400 chr5B 92.381 105 6 2 2275 2379 93679126 93679228 1.360000e-31 148.0
28 TraesCS4A01G062400 chr5B 86.408 103 12 1 2274 2374 8996396 8996294 1.790000e-20 111.0
29 TraesCS4A01G062400 chr2B 85.174 1032 88 28 2842 3853 240186238 240185252 0.000000e+00 998.0
30 TraesCS4A01G062400 chr2B 91.921 458 36 1 4255 4712 240184727 240184271 1.850000e-179 640.0
31 TraesCS4A01G062400 chr2B 98.361 61 1 0 2783 2843 240186380 240186320 2.310000e-19 108.0
32 TraesCS4A01G062400 chr1B 93.617 611 29 4 5461 6071 94207520 94206920 0.000000e+00 904.0
33 TraesCS4A01G062400 chr1B 93.148 613 30 6 5459 6071 53076328 53076928 0.000000e+00 889.0
34 TraesCS4A01G062400 chr1B 93.989 366 15 6 5461 5822 94202241 94201879 1.150000e-151 547.0
35 TraesCS4A01G062400 chr7B 92.962 611 34 3 5461 6071 685087711 685088312 0.000000e+00 881.0
36 TraesCS4A01G062400 chr7B 82.692 832 79 31 3042 3853 604515372 604516158 0.000000e+00 678.0
37 TraesCS4A01G062400 chr7B 91.048 458 40 1 4255 4712 604516483 604516939 8.650000e-173 617.0
38 TraesCS4A01G062400 chr7B 85.817 416 44 6 1663 2078 612843297 612843697 1.560000e-115 427.0
39 TraesCS4A01G062400 chr7B 96.047 253 10 0 2783 3035 604509890 604510142 4.380000e-111 412.0
40 TraesCS4A01G062400 chr7B 87.025 316 28 5 2423 2725 688016043 688016358 1.620000e-90 344.0
41 TraesCS4A01G062400 chr3B 92.045 616 37 5 5456 6071 404438620 404438017 0.000000e+00 856.0
42 TraesCS4A01G062400 chr3B 85.437 103 13 1 2274 2374 252588406 252588304 8.320000e-19 106.0
43 TraesCS4A01G062400 chr3B 96.491 57 2 0 2274 2330 470032281 470032337 1.800000e-15 95.3
44 TraesCS4A01G062400 chr6D 89.560 613 51 7 5461 6071 460730229 460729628 0.000000e+00 765.0
45 TraesCS4A01G062400 chr6D 85.393 267 26 7 2423 2676 117041969 117042235 1.300000e-66 265.0
46 TraesCS4A01G062400 chr6D 87.578 161 17 3 2274 2432 122928429 122928588 3.740000e-42 183.0
47 TraesCS4A01G062400 chr6D 100.000 35 0 0 2240 2274 117041932 117041966 1.410000e-06 65.8
48 TraesCS4A01G062400 chr6B 89.983 599 46 12 2783 3380 566644260 566643675 0.000000e+00 761.0
49 TraesCS4A01G062400 chr6B 88.298 376 31 4 1799 2168 279014170 279013802 7.220000e-119 438.0
50 TraesCS4A01G062400 chr6B 82.427 478 47 24 5600 6071 297246644 297247090 3.430000e-102 383.0
51 TraesCS4A01G062400 chr5D 93.830 470 20 3 5458 5927 138485578 138486038 0.000000e+00 699.0
52 TraesCS4A01G062400 chr5D 85.816 282 27 7 2423 2691 55335658 55335377 2.770000e-73 287.0
53 TraesCS4A01G062400 chr5D 100.000 35 0 0 2240 2274 55335695 55335661 1.410000e-06 65.8
54 TraesCS4A01G062400 chr3D 87.622 614 45 15 5457 6068 232473245 232473829 0.000000e+00 684.0
55 TraesCS4A01G062400 chr3D 85.106 282 29 5 2423 2691 402475091 402474810 5.990000e-70 276.0
56 TraesCS4A01G062400 chr3D 97.403 154 4 0 2274 2427 299900404 299900557 4.670000e-66 263.0
57 TraesCS4A01G062400 chr3D 87.379 103 12 1 2273 2374 444722656 444722554 3.840000e-22 117.0
58 TraesCS4A01G062400 chr3D 92.308 65 5 0 2269 2333 550742596 550742532 6.480000e-15 93.5
59 TraesCS4A01G062400 chr3D 100.000 35 0 0 2240 2274 402475128 402475094 1.410000e-06 65.8
60 TraesCS4A01G062400 chr7D 94.737 399 15 4 1882 2274 157760285 157760683 3.110000e-172 616.0
61 TraesCS4A01G062400 chr7D 86.118 389 36 10 2423 2797 157760686 157761070 2.640000e-108 403.0
62 TraesCS4A01G062400 chr1D 86.517 267 23 6 2423 2676 23948940 23949206 1.290000e-71 281.0
63 TraesCS4A01G062400 chr2D 100.000 35 0 0 2240 2274 8647072 8647038 1.410000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G062400 chr4A 59229839 59235909 6070 False 11212.0 11212 100.000000 1 6071 1 chr4A.!!$F1 6070
1 TraesCS4A01G062400 chr4D 417806940 417811688 4748 False 1215.2 2676 88.192800 579 5454 5 chr4D.!!$F4 4875
2 TraesCS4A01G062400 chr4D 401366519 401371130 4611 False 1210.0 2290 89.960600 830 5454 5 chr4D.!!$F3 4624
3 TraesCS4A01G062400 chr4D 401351441 401353546 2105 True 328.0 388 92.383500 2 694 2 chr4D.!!$R2 692
4 TraesCS4A01G062400 chr4B 496421174 496425682 4508 False 1332.0 2475 88.173000 565 5460 4 chr4B.!!$F1 4895
5 TraesCS4A01G062400 chr5B 687361799 687363608 1809 True 917.5 1173 89.935500 2783 4712 2 chr5B.!!$R2 1929
6 TraesCS4A01G062400 chr5B 683038488 683040315 1827 False 870.0 1112 88.785500 2783 4712 2 chr5B.!!$F2 1929
7 TraesCS4A01G062400 chr2B 240184271 240186380 2109 True 582.0 998 91.818667 2783 4712 3 chr2B.!!$R1 1929
8 TraesCS4A01G062400 chr1B 94206920 94207520 600 True 904.0 904 93.617000 5461 6071 1 chr1B.!!$R2 610
9 TraesCS4A01G062400 chr1B 53076328 53076928 600 False 889.0 889 93.148000 5459 6071 1 chr1B.!!$F1 612
10 TraesCS4A01G062400 chr7B 685087711 685088312 601 False 881.0 881 92.962000 5461 6071 1 chr7B.!!$F3 610
11 TraesCS4A01G062400 chr7B 604515372 604516939 1567 False 647.5 678 86.870000 3042 4712 2 chr7B.!!$F5 1670
12 TraesCS4A01G062400 chr3B 404438017 404438620 603 True 856.0 856 92.045000 5456 6071 1 chr3B.!!$R2 615
13 TraesCS4A01G062400 chr6D 460729628 460730229 601 True 765.0 765 89.560000 5461 6071 1 chr6D.!!$R1 610
14 TraesCS4A01G062400 chr6B 566643675 566644260 585 True 761.0 761 89.983000 2783 3380 1 chr6B.!!$R2 597
15 TraesCS4A01G062400 chr3D 232473245 232473829 584 False 684.0 684 87.622000 5457 6068 1 chr3D.!!$F1 611
16 TraesCS4A01G062400 chr7D 157760285 157761070 785 False 509.5 616 90.427500 1882 2797 2 chr7D.!!$F1 915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
161 162 0.108186 TAGCTTGGTCATGCGGTCTG 60.108 55.0 0.0 0.0 36.69 3.51 F
269 471 0.315568 GTCGTGTCAGAGCCAGAGTT 59.684 55.0 0.0 0.0 0.00 3.01 F
333 535 0.519519 CAAGGTTGCGGTGCGATAAA 59.480 50.0 0.0 0.0 0.00 1.40 F
2317 3789 0.178981 CCCCGGCTCCATTGAATCAT 60.179 55.0 0.0 0.0 0.00 2.45 F
2346 3818 0.037303 CCAGCAAGTCAGGGTCATGT 59.963 55.0 0.0 0.0 0.00 3.21 F
2400 3872 0.116940 AACAACATGCCAGGGGGAAT 59.883 50.0 0.0 0.0 35.59 3.01 F
4001 5863 0.182775 AACGTTGCAAGAGAACCCCT 59.817 50.0 0.0 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 3048 0.246635 AACTGCTTGGCGTAGTCGAT 59.753 50.000 0.0 0.0 37.61 3.59 R
1796 3250 0.461961 CCTCGTCCTCCAAGTCATCC 59.538 60.000 0.0 0.0 0.00 3.51 R
2327 3799 0.037303 ACATGACCCTGACTTGCTGG 59.963 55.000 0.0 0.0 35.50 4.85 R
3530 5234 0.107165 GGTATCCCCTGACCACTTGC 60.107 60.000 0.0 0.0 35.65 4.01 R
4021 5883 1.068679 GGCTCTGCTTTCTCTTGCAAC 60.069 52.381 0.0 0.0 38.81 4.17 R
4034 5896 1.115326 AACCACAAAAGGGGCTCTGC 61.115 55.000 0.0 0.0 0.00 4.26 R
5858 7907 0.178926 TAGAGAACCCAACCCGACCA 60.179 55.000 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.079750 GGAGCAACTCCCGAGTGAC 60.080 63.158 1.98 0.00 44.36 3.67
151 152 0.183492 TCATGCCCCATAGCTTGGTC 59.817 55.000 12.18 6.08 44.83 4.02
155 156 1.458639 GCCCCATAGCTTGGTCATGC 61.459 60.000 12.18 1.21 44.83 4.06
161 162 0.108186 TAGCTTGGTCATGCGGTCTG 60.108 55.000 0.00 0.00 36.69 3.51
182 183 4.491676 TGAGTTGTTGAAGCGACTATACC 58.508 43.478 0.00 0.00 33.52 2.73
242 444 1.909700 AAGTTGGTGATGGCGATGTT 58.090 45.000 0.00 0.00 0.00 2.71
258 460 3.702330 GATGTTGATATCGGTCGTGTCA 58.298 45.455 0.00 0.00 0.00 3.58
259 461 3.145212 TGTTGATATCGGTCGTGTCAG 57.855 47.619 0.00 0.00 0.00 3.51
265 467 1.938657 ATCGGTCGTGTCAGAGCCAG 61.939 60.000 0.00 0.00 35.40 4.85
269 471 0.315568 GTCGTGTCAGAGCCAGAGTT 59.684 55.000 0.00 0.00 0.00 3.01
275 477 1.131638 TCAGAGCCAGAGTTGGTTGT 58.868 50.000 0.00 0.00 46.80 3.32
296 498 3.792956 GTCTGTGTTTGAAGTCGACGTAA 59.207 43.478 10.46 0.00 0.00 3.18
315 517 1.466856 ACGACGAGGTTGGTATAGCA 58.533 50.000 0.00 0.00 0.00 3.49
333 535 0.519519 CAAGGTTGCGGTGCGATAAA 59.480 50.000 0.00 0.00 0.00 1.40
341 543 1.396996 GCGGTGCGATAAAATCAGTGT 59.603 47.619 0.00 0.00 0.00 3.55
381 583 2.733218 CGAAGAGGTCGTGCGCAA 60.733 61.111 14.00 0.00 45.09 4.85
401 603 1.144969 TTGAGGAAAGCGTAACTGCG 58.855 50.000 0.00 0.00 40.67 5.18
428 630 6.205464 GTGTGTATCTGCATTGCTATGGTTAT 59.795 38.462 10.49 0.00 32.15 1.89
429 631 6.772233 TGTGTATCTGCATTGCTATGGTTATT 59.228 34.615 10.49 0.00 32.15 1.40
430 632 7.080099 GTGTATCTGCATTGCTATGGTTATTG 58.920 38.462 10.49 0.00 32.15 1.90
446 648 7.987750 TGGTTATTGATACACAAGCAACTTA 57.012 32.000 0.00 0.00 42.02 2.24
447 649 8.039603 TGGTTATTGATACACAAGCAACTTAG 57.960 34.615 0.00 0.00 42.02 2.18
449 651 5.567138 ATTGATACACAAGCAACTTAGGC 57.433 39.130 0.00 0.00 42.02 3.93
450 652 4.014569 TGATACACAAGCAACTTAGGCA 57.985 40.909 0.00 0.00 0.00 4.75
451 653 4.588899 TGATACACAAGCAACTTAGGCAT 58.411 39.130 0.00 0.00 0.00 4.40
452 654 5.739959 TGATACACAAGCAACTTAGGCATA 58.260 37.500 0.00 0.00 0.00 3.14
453 655 6.356556 TGATACACAAGCAACTTAGGCATAT 58.643 36.000 0.00 0.00 0.00 1.78
454 656 4.970662 ACACAAGCAACTTAGGCATATG 57.029 40.909 0.00 0.00 0.00 1.78
492 1899 7.822822 GGTCTTGAAGTTGCTCTAAATACCTAA 59.177 37.037 0.00 0.00 0.00 2.69
561 1969 2.300152 TGAGTAGGAGACAACTTGGCAG 59.700 50.000 0.00 0.00 0.00 4.85
562 1970 2.300437 GAGTAGGAGACAACTTGGCAGT 59.700 50.000 0.00 0.00 33.11 4.40
563 1971 2.037772 AGTAGGAGACAACTTGGCAGTG 59.962 50.000 0.00 0.00 31.60 3.66
682 2109 1.990614 GTGGGTCCTCTCCCCTCAC 60.991 68.421 0.00 0.00 46.48 3.51
684 2111 1.687493 GGGTCCTCTCCCCTCACAG 60.687 68.421 0.00 0.00 41.54 3.66
716 2143 2.266055 GTTGGTCCTCTCCTGCGG 59.734 66.667 0.00 0.00 0.00 5.69
816 2243 1.538950 GCTCTTTGCTTCCTCACCAAG 59.461 52.381 0.00 0.00 38.95 3.61
817 2244 1.538950 CTCTTTGCTTCCTCACCAAGC 59.461 52.381 0.00 0.00 45.59 4.01
818 2245 1.143684 TCTTTGCTTCCTCACCAAGCT 59.856 47.619 6.03 0.00 45.59 3.74
819 2246 1.538950 CTTTGCTTCCTCACCAAGCTC 59.461 52.381 6.03 0.00 45.59 4.09
820 2247 0.603707 TTGCTTCCTCACCAAGCTCG 60.604 55.000 6.03 0.00 45.59 5.03
821 2248 1.004440 GCTTCCTCACCAAGCTCGT 60.004 57.895 0.00 0.00 42.63 4.18
983 2434 2.043405 GTGGCCACACACACACACA 61.043 57.895 31.23 0.00 46.90 3.72
1196 2647 4.394712 CACCACCGCCACCTCCTC 62.395 72.222 0.00 0.00 0.00 3.71
1365 2819 2.835431 CTCCGCTCCGTCCTCCAT 60.835 66.667 0.00 0.00 0.00 3.41
1473 2927 2.730524 GGAGGAGGAGGTGCTCAGC 61.731 68.421 0.63 0.00 45.40 4.26
1594 3048 2.382305 TCCTACACCTTCTCCCTCTTCA 59.618 50.000 0.00 0.00 0.00 3.02
1762 3216 4.261572 CGGTGTTTGATCTGATTTGTTGGT 60.262 41.667 0.00 0.00 0.00 3.67
1796 3250 1.667236 TGTGTCAGTGGAAGCAGTTG 58.333 50.000 0.00 0.00 0.00 3.16
1970 3424 0.956633 TCGAGGTCAGTGTACACCAC 59.043 55.000 22.28 17.97 44.89 4.16
2091 3551 5.122554 TGGTATTGTGCTGGTAATTTACGTG 59.877 40.000 0.00 0.00 0.00 4.49
2095 3555 3.495377 TGTGCTGGTAATTTACGTGACAC 59.505 43.478 0.00 0.00 0.00 3.67
2223 3695 1.882780 GCAGCAGATCCAGCTATGCAT 60.883 52.381 3.79 3.79 41.14 3.96
2274 3746 7.375834 TGTCTACTGTCGAAGATGTTATTGTT 58.624 34.615 0.00 0.00 40.67 2.83
2275 3747 7.870954 TGTCTACTGTCGAAGATGTTATTGTTT 59.129 33.333 0.00 0.00 40.67 2.83
2276 3748 8.709646 GTCTACTGTCGAAGATGTTATTGTTTT 58.290 33.333 0.00 0.00 40.67 2.43
2277 3749 9.268268 TCTACTGTCGAAGATGTTATTGTTTTT 57.732 29.630 0.00 0.00 40.67 1.94
2298 3770 5.977489 TTTTTAGAGAAAAAGGGCCTAGC 57.023 39.130 6.41 0.00 39.16 3.42
2299 3771 4.341487 TTTTAGAGAAAAAGGGCCTAGCC 58.659 43.478 6.41 0.00 38.91 3.93
2314 3786 2.123726 GCCCCGGCTCCATTGAAT 60.124 61.111 0.00 0.00 38.26 2.57
2315 3787 2.196245 GCCCCGGCTCCATTGAATC 61.196 63.158 0.00 0.00 38.26 2.52
2316 3788 1.227102 CCCCGGCTCCATTGAATCA 59.773 57.895 0.00 0.00 0.00 2.57
2317 3789 0.178981 CCCCGGCTCCATTGAATCAT 60.179 55.000 0.00 0.00 0.00 2.45
2318 3790 1.242076 CCCGGCTCCATTGAATCATC 58.758 55.000 0.00 0.00 0.00 2.92
2319 3791 1.477377 CCCGGCTCCATTGAATCATCA 60.477 52.381 0.00 0.00 0.00 3.07
2331 3803 4.724074 TGAATCATCAATGAAACCCAGC 57.276 40.909 0.00 0.00 40.69 4.85
2332 3804 4.087907 TGAATCATCAATGAAACCCAGCA 58.912 39.130 0.00 0.00 40.69 4.41
2333 3805 4.527427 TGAATCATCAATGAAACCCAGCAA 59.473 37.500 0.00 0.00 40.69 3.91
2334 3806 4.730949 ATCATCAATGAAACCCAGCAAG 57.269 40.909 0.00 0.00 40.69 4.01
2335 3807 3.499338 TCATCAATGAAACCCAGCAAGT 58.501 40.909 0.00 0.00 33.08 3.16
2336 3808 3.507233 TCATCAATGAAACCCAGCAAGTC 59.493 43.478 0.00 0.00 33.08 3.01
2337 3809 2.942804 TCAATGAAACCCAGCAAGTCA 58.057 42.857 0.00 0.00 0.00 3.41
2338 3810 2.886523 TCAATGAAACCCAGCAAGTCAG 59.113 45.455 0.00 0.00 0.00 3.51
2339 3811 1.915141 ATGAAACCCAGCAAGTCAGG 58.085 50.000 0.00 0.00 0.00 3.86
2340 3812 0.178992 TGAAACCCAGCAAGTCAGGG 60.179 55.000 0.00 0.00 46.33 4.45
2343 3815 3.160585 CCCAGCAAGTCAGGGTCA 58.839 61.111 0.00 0.00 36.79 4.02
2344 3816 1.687612 CCCAGCAAGTCAGGGTCAT 59.312 57.895 0.00 0.00 36.79 3.06
2345 3817 0.679002 CCCAGCAAGTCAGGGTCATG 60.679 60.000 0.00 0.00 36.79 3.07
2346 3818 0.037303 CCAGCAAGTCAGGGTCATGT 59.963 55.000 0.00 0.00 0.00 3.21
2347 3819 1.278985 CCAGCAAGTCAGGGTCATGTA 59.721 52.381 0.00 0.00 0.00 2.29
2348 3820 2.290260 CCAGCAAGTCAGGGTCATGTAA 60.290 50.000 0.00 0.00 0.00 2.41
2349 3821 2.744202 CAGCAAGTCAGGGTCATGTAAC 59.256 50.000 0.00 0.00 0.00 2.50
2350 3822 2.371841 AGCAAGTCAGGGTCATGTAACA 59.628 45.455 0.00 0.00 0.00 2.41
2351 3823 3.146066 GCAAGTCAGGGTCATGTAACAA 58.854 45.455 0.00 0.00 0.00 2.83
2352 3824 3.189287 GCAAGTCAGGGTCATGTAACAAG 59.811 47.826 0.00 0.00 0.00 3.16
2353 3825 4.389374 CAAGTCAGGGTCATGTAACAAGT 58.611 43.478 0.00 0.00 0.00 3.16
2354 3826 4.008074 AGTCAGGGTCATGTAACAAGTG 57.992 45.455 0.00 0.00 0.00 3.16
2355 3827 3.391296 AGTCAGGGTCATGTAACAAGTGT 59.609 43.478 0.00 0.00 0.00 3.55
2356 3828 4.134563 GTCAGGGTCATGTAACAAGTGTT 58.865 43.478 1.75 1.75 41.73 3.32
2357 3829 5.071250 AGTCAGGGTCATGTAACAAGTGTTA 59.929 40.000 0.00 0.00 39.31 2.41
2358 3830 5.938125 GTCAGGGTCATGTAACAAGTGTTAT 59.062 40.000 7.14 0.00 41.85 1.89
2359 3831 6.430000 GTCAGGGTCATGTAACAAGTGTTATT 59.570 38.462 7.14 0.00 41.85 1.40
2360 3832 7.604927 GTCAGGGTCATGTAACAAGTGTTATTA 59.395 37.037 7.14 1.36 41.85 0.98
2361 3833 7.604927 TCAGGGTCATGTAACAAGTGTTATTAC 59.395 37.037 7.14 0.00 41.85 1.89
2362 3834 7.389330 CAGGGTCATGTAACAAGTGTTATTACA 59.611 37.037 7.14 4.28 41.85 2.41
2363 3835 7.940137 AGGGTCATGTAACAAGTGTTATTACAA 59.060 33.333 7.14 0.00 40.98 2.41
2364 3836 8.019094 GGGTCATGTAACAAGTGTTATTACAAC 58.981 37.037 7.14 1.01 40.98 3.32
2365 3837 7.742963 GGTCATGTAACAAGTGTTATTACAACG 59.257 37.037 7.14 1.20 40.98 4.10
2366 3838 7.267600 GTCATGTAACAAGTGTTATTACAACGC 59.732 37.037 7.14 0.00 40.98 4.84
2367 3839 6.847956 TGTAACAAGTGTTATTACAACGCT 57.152 33.333 7.14 0.00 41.85 5.07
2369 3841 8.362860 TGTAACAAGTGTTATTACAACGCTTA 57.637 30.769 13.74 0.00 45.82 3.09
2370 3842 8.824781 TGTAACAAGTGTTATTACAACGCTTAA 58.175 29.630 13.74 3.13 45.82 1.85
2371 3843 9.649024 GTAACAAGTGTTATTACAACGCTTAAA 57.351 29.630 13.74 2.85 45.82 1.52
2373 3845 8.776680 ACAAGTGTTATTACAACGCTTAAAAG 57.223 30.769 13.74 6.37 45.82 2.27
2374 3846 7.858879 ACAAGTGTTATTACAACGCTTAAAAGG 59.141 33.333 13.74 6.08 45.82 3.11
2375 3847 7.733402 AGTGTTATTACAACGCTTAAAAGGA 57.267 32.000 0.00 0.00 37.70 3.36
2376 3848 8.156994 AGTGTTATTACAACGCTTAAAAGGAA 57.843 30.769 0.00 0.00 37.70 3.36
2377 3849 8.623030 AGTGTTATTACAACGCTTAAAAGGAAA 58.377 29.630 0.00 0.00 37.70 3.13
2378 3850 9.235537 GTGTTATTACAACGCTTAAAAGGAAAA 57.764 29.630 0.00 0.00 35.69 2.29
2379 3851 9.453325 TGTTATTACAACGCTTAAAAGGAAAAG 57.547 29.630 0.00 0.00 0.00 2.27
2380 3852 8.422457 GTTATTACAACGCTTAAAAGGAAAAGC 58.578 33.333 0.00 0.00 43.71 3.51
2381 3853 4.379339 ACAACGCTTAAAAGGAAAAGCA 57.621 36.364 7.71 0.00 46.74 3.91
2382 3854 4.749976 ACAACGCTTAAAAGGAAAAGCAA 58.250 34.783 7.71 0.00 46.74 3.91
2383 3855 4.565166 ACAACGCTTAAAAGGAAAAGCAAC 59.435 37.500 7.71 0.00 46.74 4.17
2384 3856 4.379339 ACGCTTAAAAGGAAAAGCAACA 57.621 36.364 7.71 0.00 46.74 3.33
2385 3857 4.749976 ACGCTTAAAAGGAAAAGCAACAA 58.250 34.783 7.71 0.00 46.74 2.83
2386 3858 4.565166 ACGCTTAAAAGGAAAAGCAACAAC 59.435 37.500 7.71 0.00 46.74 3.32
2387 3859 4.564769 CGCTTAAAAGGAAAAGCAACAACA 59.435 37.500 7.71 0.00 46.74 3.33
2388 3860 5.234116 CGCTTAAAAGGAAAAGCAACAACAT 59.766 36.000 7.71 0.00 46.74 2.71
2389 3861 6.421405 GCTTAAAAGGAAAAGCAACAACATG 58.579 36.000 2.35 0.00 45.89 3.21
2390 3862 4.880886 AAAAGGAAAAGCAACAACATGC 57.119 36.364 0.00 0.00 46.78 4.06
2396 3868 2.658422 GCAACAACATGCCAGGGG 59.342 61.111 0.00 0.00 40.49 4.79
2397 3869 2.946346 GCAACAACATGCCAGGGGG 61.946 63.158 0.00 0.00 40.49 5.40
2398 3870 1.228831 CAACAACATGCCAGGGGGA 60.229 57.895 0.00 0.00 35.59 4.81
2399 3871 0.831288 CAACAACATGCCAGGGGGAA 60.831 55.000 0.00 0.00 35.59 3.97
2400 3872 0.116940 AACAACATGCCAGGGGGAAT 59.883 50.000 0.00 0.00 35.59 3.01
2401 3873 1.006813 ACAACATGCCAGGGGGAATA 58.993 50.000 0.00 0.00 35.59 1.75
2402 3874 1.360852 ACAACATGCCAGGGGGAATAA 59.639 47.619 0.00 0.00 35.59 1.40
2403 3875 1.756538 CAACATGCCAGGGGGAATAAC 59.243 52.381 0.00 0.00 35.59 1.89
2404 3876 1.006813 ACATGCCAGGGGGAATAACA 58.993 50.000 0.00 0.00 35.59 2.41
2405 3877 1.341976 ACATGCCAGGGGGAATAACAC 60.342 52.381 0.00 0.00 35.59 3.32
2406 3878 0.261696 ATGCCAGGGGGAATAACACC 59.738 55.000 0.00 0.00 42.36 4.16
2527 4000 1.207593 GCGAGCACTTGAATTGCGT 59.792 52.632 1.79 0.00 45.15 5.24
2557 4044 6.349777 CGCCATTAATTTTGAGGAGGTGTTTA 60.350 38.462 0.00 0.00 0.00 2.01
2574 4061 8.647143 AGGTGTTTATTTTGACATTTTGACAG 57.353 30.769 0.00 0.00 0.00 3.51
2576 4063 9.522804 GGTGTTTATTTTGACATTTTGACAGTA 57.477 29.630 0.00 0.00 0.00 2.74
2603 4094 9.147732 AGAGTTTGAAAAAGGAAAATACCTCAT 57.852 29.630 0.00 0.00 39.62 2.90
2605 4096 9.764363 AGTTTGAAAAAGGAAAATACCTCATTC 57.236 29.630 0.00 0.00 39.62 2.67
2607 4098 9.762933 TTTGAAAAAGGAAAATACCTCATTCAG 57.237 29.630 0.00 0.00 41.23 3.02
2608 4099 8.477419 TGAAAAAGGAAAATACCTCATTCAGT 57.523 30.769 0.00 0.00 38.44 3.41
2609 4100 8.359642 TGAAAAAGGAAAATACCTCATTCAGTG 58.640 33.333 0.00 0.00 38.44 3.66
2615 4128 6.403866 AAAATACCTCATTCAGTGTTTGCA 57.596 33.333 0.00 0.00 29.22 4.08
2740 4296 5.998981 CGTATGTGCCCCTTTTATACCATTA 59.001 40.000 0.00 0.00 0.00 1.90
2762 4318 9.499585 CATTACATTCAAATCTAAGCTTCTGTG 57.500 33.333 0.00 0.00 0.00 3.66
2856 4547 9.772973 TGATACGCAACTAGATATTAAAATGGT 57.227 29.630 0.00 0.00 0.00 3.55
3186 4878 7.920160 TCTGATTCAGTAAAATGTGTGCATA 57.080 32.000 13.23 0.00 32.09 3.14
3187 4879 8.334263 TCTGATTCAGTAAAATGTGTGCATAA 57.666 30.769 13.23 0.00 32.09 1.90
3255 4958 7.624077 AGGTTGGTAGTAAGATAGGATTGTCTT 59.376 37.037 0.00 0.00 38.23 3.01
3256 4959 7.711339 GGTTGGTAGTAAGATAGGATTGTCTTG 59.289 40.741 0.00 0.00 35.78 3.02
3275 4978 5.236911 GTCTTGGTTGAACGTTTGTACCATA 59.763 40.000 22.51 14.88 38.57 2.74
3276 4979 5.998981 TCTTGGTTGAACGTTTGTACCATAT 59.001 36.000 22.51 0.00 38.57 1.78
3277 4980 6.487331 TCTTGGTTGAACGTTTGTACCATATT 59.513 34.615 22.51 0.00 38.57 1.28
3278 4981 6.636562 TGGTTGAACGTTTGTACCATATTT 57.363 33.333 19.76 0.00 34.13 1.40
3279 4982 6.439599 TGGTTGAACGTTTGTACCATATTTG 58.560 36.000 19.76 0.00 34.13 2.32
3351 5054 7.109006 ACAAAAGAAGCTTCAAATAAATGCG 57.891 32.000 27.57 7.46 0.00 4.73
3365 5068 9.698309 TCAAATAAATGCGTCCTTTTAATTCAA 57.302 25.926 0.00 0.00 0.00 2.69
3370 5073 3.504520 TGCGTCCTTTTAATTCAAGTCCC 59.495 43.478 0.00 0.00 0.00 4.46
3397 5101 6.590677 AGTTTCAGCGTAGTTTCCTATTCTTC 59.409 38.462 0.00 0.00 0.00 2.87
3445 5149 8.779354 ACTGTTAAATCCTAACTAAGCTCTTG 57.221 34.615 0.00 0.00 0.00 3.02
3483 5187 5.876651 TCTCTATTTGCCAGAGCTCATTA 57.123 39.130 17.77 0.00 39.55 1.90
3486 5190 5.363101 TCTATTTGCCAGAGCTCATTACAG 58.637 41.667 17.77 2.63 40.80 2.74
3488 5192 3.423539 TTGCCAGAGCTCATTACAGTT 57.576 42.857 17.77 0.00 40.80 3.16
3496 5200 7.201565 GCCAGAGCTCATTACAGTTTAACTTAG 60.202 40.741 17.77 0.00 35.50 2.18
3500 5204 9.204570 GAGCTCATTACAGTTTAACTTAGTTGA 57.795 33.333 9.40 0.00 0.00 3.18
3522 5226 5.586243 TGAGCATTTGATAGACCTTAGCAAC 59.414 40.000 0.00 0.00 0.00 4.17
3524 5228 6.889198 AGCATTTGATAGACCTTAGCAACTA 58.111 36.000 0.00 0.00 0.00 2.24
3526 5230 6.538742 GCATTTGATAGACCTTAGCAACTACA 59.461 38.462 0.00 0.00 0.00 2.74
3527 5231 7.254590 GCATTTGATAGACCTTAGCAACTACAG 60.255 40.741 0.00 0.00 0.00 2.74
3528 5232 6.852420 TTGATAGACCTTAGCAACTACAGT 57.148 37.500 0.00 0.00 0.00 3.55
3529 5233 7.949690 TTGATAGACCTTAGCAACTACAGTA 57.050 36.000 0.00 0.00 0.00 2.74
3530 5234 7.569639 TGATAGACCTTAGCAACTACAGTAG 57.430 40.000 6.00 6.00 0.00 2.57
3531 5235 4.722361 AGACCTTAGCAACTACAGTAGC 57.278 45.455 7.57 0.00 0.00 3.58
3532 5236 4.087182 AGACCTTAGCAACTACAGTAGCA 58.913 43.478 7.57 0.00 0.00 3.49
3533 5237 4.527038 AGACCTTAGCAACTACAGTAGCAA 59.473 41.667 7.57 0.00 0.00 3.91
3534 5238 4.822026 ACCTTAGCAACTACAGTAGCAAG 58.178 43.478 7.57 4.08 0.00 4.01
3535 5239 4.283722 ACCTTAGCAACTACAGTAGCAAGT 59.716 41.667 7.57 0.00 0.00 3.16
3536 5240 4.627467 CCTTAGCAACTACAGTAGCAAGTG 59.373 45.833 7.57 2.67 0.00 3.16
3537 5241 3.045601 AGCAACTACAGTAGCAAGTGG 57.954 47.619 7.57 0.00 0.00 4.00
3569 5273 7.436376 GGATACCTTGATTTTATTGAAAGCTGC 59.564 37.037 0.00 0.00 34.77 5.25
3578 5282 2.529780 TTGAAAGCTGCCATTGGTTG 57.470 45.000 4.26 0.00 0.00 3.77
3673 5387 1.590238 CGCTGCATGCTAGTACTTCAC 59.410 52.381 20.33 0.00 40.11 3.18
3718 5432 5.828747 CATTAGGAAATGTTGATGAGCTGG 58.171 41.667 0.00 0.00 38.15 4.85
3733 5447 6.606796 TGATGAGCTGGGCATTTTAGAAATTA 59.393 34.615 0.00 0.00 0.00 1.40
3804 5518 6.983307 ACTTGAGCATAGTAGTTAGCATCTTG 59.017 38.462 0.00 0.00 0.00 3.02
3815 5529 4.706962 AGTTAGCATCTTGGATTTGGAACC 59.293 41.667 0.00 0.00 0.00 3.62
3868 5582 6.539649 TTGTAGTGAACTGAAGCATTGTAC 57.460 37.500 0.00 0.00 0.00 2.90
3870 5584 5.696270 TGTAGTGAACTGAAGCATTGTACAG 59.304 40.000 0.00 0.00 36.58 2.74
3878 5642 4.910195 TGAAGCATTGTACAGGTGATTCT 58.090 39.130 26.97 7.08 38.63 2.40
3881 5645 5.420725 AGCATTGTACAGGTGATTCTGTA 57.579 39.130 12.84 1.12 45.18 2.74
3896 5660 7.308229 GGTGATTCTGTATCCATTATGACTTGC 60.308 40.741 0.00 0.00 31.87 4.01
3897 5661 6.424812 TGATTCTGTATCCATTATGACTTGCG 59.575 38.462 0.00 0.00 31.87 4.85
3910 5674 2.364324 TGACTTGCGTAGACAGTCCTTT 59.636 45.455 0.00 0.00 0.00 3.11
3972 5834 2.223782 GCATCAACTTTCTGGTTGCACA 60.224 45.455 0.00 0.00 44.19 4.57
3985 5847 3.120025 TGGTTGCACATGCTTACATAACG 60.120 43.478 5.31 0.00 42.66 3.18
3986 5848 3.119990 GGTTGCACATGCTTACATAACGT 60.120 43.478 5.31 0.00 42.66 3.99
3987 5849 4.472286 GTTGCACATGCTTACATAACGTT 58.528 39.130 5.88 5.88 42.66 3.99
3988 5850 4.077063 TGCACATGCTTACATAACGTTG 57.923 40.909 11.99 0.00 42.66 4.10
3989 5851 2.845967 GCACATGCTTACATAACGTTGC 59.154 45.455 11.99 4.98 38.21 4.17
3990 5852 3.669290 GCACATGCTTACATAACGTTGCA 60.669 43.478 11.99 11.19 39.22 4.08
3991 5853 4.471373 CACATGCTTACATAACGTTGCAA 58.529 39.130 11.99 0.00 38.66 4.08
3992 5854 4.554586 CACATGCTTACATAACGTTGCAAG 59.445 41.667 11.99 10.15 38.66 4.01
3993 5855 4.454161 ACATGCTTACATAACGTTGCAAGA 59.546 37.500 11.99 0.00 38.66 3.02
3994 5856 4.661993 TGCTTACATAACGTTGCAAGAG 57.338 40.909 11.99 0.00 34.40 2.85
3995 5857 4.311606 TGCTTACATAACGTTGCAAGAGA 58.688 39.130 11.99 0.00 34.40 3.10
3996 5858 4.752604 TGCTTACATAACGTTGCAAGAGAA 59.247 37.500 11.99 0.00 34.40 2.87
3997 5859 5.080068 GCTTACATAACGTTGCAAGAGAAC 58.920 41.667 11.99 0.00 0.00 3.01
3998 5860 5.600908 TTACATAACGTTGCAAGAGAACC 57.399 39.130 11.99 0.00 0.00 3.62
3999 5861 2.812011 ACATAACGTTGCAAGAGAACCC 59.188 45.455 11.99 0.00 0.00 4.11
4000 5862 1.886886 TAACGTTGCAAGAGAACCCC 58.113 50.000 11.99 0.00 0.00 4.95
4001 5863 0.182775 AACGTTGCAAGAGAACCCCT 59.817 50.000 0.00 0.00 0.00 4.79
4002 5864 0.182775 ACGTTGCAAGAGAACCCCTT 59.817 50.000 0.00 0.00 0.00 3.95
4003 5865 1.318576 CGTTGCAAGAGAACCCCTTT 58.681 50.000 0.00 0.00 0.00 3.11
4004 5866 1.266989 CGTTGCAAGAGAACCCCTTTC 59.733 52.381 0.00 0.00 33.95 2.62
4005 5867 2.306847 GTTGCAAGAGAACCCCTTTCA 58.693 47.619 0.00 0.00 36.57 2.69
4006 5868 2.893489 GTTGCAAGAGAACCCCTTTCAT 59.107 45.455 0.00 0.00 36.57 2.57
4007 5869 2.795329 TGCAAGAGAACCCCTTTCATC 58.205 47.619 0.00 0.00 36.57 2.92
4008 5870 2.376518 TGCAAGAGAACCCCTTTCATCT 59.623 45.455 0.00 0.00 36.57 2.90
4009 5871 3.587061 TGCAAGAGAACCCCTTTCATCTA 59.413 43.478 0.00 0.00 36.57 1.98
4010 5872 4.042809 TGCAAGAGAACCCCTTTCATCTAA 59.957 41.667 0.00 0.00 36.57 2.10
4011 5873 5.010282 GCAAGAGAACCCCTTTCATCTAAA 58.990 41.667 0.00 0.00 36.57 1.85
4012 5874 5.476945 GCAAGAGAACCCCTTTCATCTAAAA 59.523 40.000 0.00 0.00 36.57 1.52
4013 5875 6.015434 GCAAGAGAACCCCTTTCATCTAAAAA 60.015 38.462 0.00 0.00 36.57 1.94
4014 5876 7.310052 GCAAGAGAACCCCTTTCATCTAAAAAT 60.310 37.037 0.00 0.00 36.57 1.82
4015 5877 9.243105 CAAGAGAACCCCTTTCATCTAAAAATA 57.757 33.333 0.00 0.00 36.57 1.40
4016 5878 9.822727 AAGAGAACCCCTTTCATCTAAAAATAA 57.177 29.630 0.00 0.00 36.57 1.40
4017 5879 9.997172 AGAGAACCCCTTTCATCTAAAAATAAT 57.003 29.630 0.00 0.00 36.57 1.28
4043 5905 1.311651 GCAAGAGAAAGCAGAGCCCC 61.312 60.000 0.00 0.00 0.00 5.80
4078 5940 6.707440 TGTTGAAGTTTTTGAGCCTGAATA 57.293 33.333 0.00 0.00 0.00 1.75
4138 6000 2.031037 AAATAAATATGCCGCGCACG 57.969 45.000 8.75 0.00 43.04 5.34
4159 6026 5.234329 CACGGTACTATGCAGAAACAATAGG 59.766 44.000 0.00 0.00 0.00 2.57
4176 6126 6.958767 ACAATAGGGTACTTTAGAACAGCAT 58.041 36.000 0.00 0.00 0.00 3.79
4177 6127 6.823689 ACAATAGGGTACTTTAGAACAGCATG 59.176 38.462 0.00 0.00 46.00 4.06
4291 6280 7.730364 TTTGTTCCTTCATCTTTGTCTCTAC 57.270 36.000 0.00 0.00 0.00 2.59
4297 6286 5.395103 CCTTCATCTTTGTCTCTACTCAGGG 60.395 48.000 0.00 0.00 0.00 4.45
4321 6310 5.615544 GCAATGTAATCTCACTGTGTGTGTC 60.616 44.000 7.79 0.32 46.27 3.67
4470 6459 6.147328 GTCCACAATTTTCTCTGGTACTACAC 59.853 42.308 0.00 0.00 0.00 2.90
4529 6518 0.868406 GAACGAGAAGCCAACACTGG 59.132 55.000 0.00 0.00 46.65 4.00
4543 6532 3.004752 ACACTGGCAGTTCACTTTTCT 57.995 42.857 19.43 0.00 0.00 2.52
4544 6533 2.684881 ACACTGGCAGTTCACTTTTCTG 59.315 45.455 19.43 5.10 0.00 3.02
4576 6565 1.134699 TGCAGGTTCTATCTGAAGGCG 60.135 52.381 0.00 0.00 35.01 5.52
4594 6583 0.384725 CGGCAAAAGCAGACGACAAG 60.385 55.000 0.00 0.00 40.78 3.16
4652 6641 0.824109 TCTGGACCATAAGCACCTCG 59.176 55.000 0.00 0.00 0.00 4.63
4713 6702 1.970114 CCTGCCTTGCCACTGACAG 60.970 63.158 0.00 0.00 0.00 3.51
4753 6742 4.390264 GGGTAATGGAGGTAAATGCTCTC 58.610 47.826 0.00 0.00 0.00 3.20
4783 6777 4.340381 ACCATCAAAGCTATGCATTTCTCC 59.660 41.667 3.54 0.00 0.00 3.71
4799 6799 4.966965 TTCTCCTATGTCTTCTGTCGTC 57.033 45.455 0.00 0.00 0.00 4.20
4800 6800 3.951663 TCTCCTATGTCTTCTGTCGTCA 58.048 45.455 0.00 0.00 0.00 4.35
4801 6801 3.942115 TCTCCTATGTCTTCTGTCGTCAG 59.058 47.826 3.03 3.03 42.54 3.51
4835 6863 1.002624 CCTGACCGCTTTGCCCTTA 60.003 57.895 0.00 0.00 0.00 2.69
4836 6864 0.608035 CCTGACCGCTTTGCCCTTAA 60.608 55.000 0.00 0.00 0.00 1.85
4837 6865 1.463674 CTGACCGCTTTGCCCTTAAT 58.536 50.000 0.00 0.00 0.00 1.40
4840 6868 0.887933 ACCGCTTTGCCCTTAATGTG 59.112 50.000 0.00 0.00 0.00 3.21
4861 6889 1.244697 TGCAGACTCACTCGAGGACC 61.245 60.000 18.41 1.02 44.17 4.46
4904 6932 4.837093 TGTTTAATGGTTCGATCCCTCT 57.163 40.909 10.02 0.00 0.00 3.69
4905 6933 5.174037 TGTTTAATGGTTCGATCCCTCTT 57.826 39.130 10.02 4.17 0.00 2.85
4906 6934 5.183228 TGTTTAATGGTTCGATCCCTCTTC 58.817 41.667 10.02 0.00 0.00 2.87
4923 6951 4.253685 CTCTTCCCTCGCATTCTTTGTTA 58.746 43.478 0.00 0.00 0.00 2.41
4928 6956 3.443681 CCCTCGCATTCTTTGTTATTGGT 59.556 43.478 0.00 0.00 0.00 3.67
4963 7000 1.233019 GTGCTCTTGACAGTGTGCAT 58.767 50.000 0.00 0.00 32.98 3.96
4965 7002 2.414481 GTGCTCTTGACAGTGTGCATAG 59.586 50.000 0.00 1.63 32.98 2.23
4971 7008 5.470368 TCTTGACAGTGTGCATAGACTTAC 58.530 41.667 0.00 0.00 0.00 2.34
4975 7012 4.982999 ACAGTGTGCATAGACTTACGTAG 58.017 43.478 0.00 0.00 0.00 3.51
4976 7013 3.791887 CAGTGTGCATAGACTTACGTAGC 59.208 47.826 0.00 0.00 0.00 3.58
4978 7015 3.791887 GTGTGCATAGACTTACGTAGCTG 59.208 47.826 0.00 0.00 0.00 4.24
4980 7017 4.157105 TGTGCATAGACTTACGTAGCTGAA 59.843 41.667 0.00 0.00 0.00 3.02
4981 7018 4.499758 GTGCATAGACTTACGTAGCTGAAC 59.500 45.833 0.00 0.00 0.00 3.18
5071 7111 5.163447 TGGCTGATAAACTATGCTTCGTAGT 60.163 40.000 0.00 0.00 37.74 2.73
5076 7116 3.705043 AACTATGCTTCGTAGTACCCG 57.295 47.619 0.00 0.00 35.43 5.28
5083 7123 2.440796 CGTAGTACCCGGGGCTCA 60.441 66.667 27.92 3.89 0.00 4.26
5242 7282 1.656652 CTGTAAAGGGGCAGATCGTG 58.343 55.000 0.00 0.00 34.87 4.35
5271 7314 5.577164 CAGAATTTCGTACTGAGGTGGTAAG 59.423 44.000 0.00 0.00 34.07 2.34
5322 7365 1.264020 TGTGTCTTTTGCATCGTCAGC 59.736 47.619 0.00 0.00 0.00 4.26
5350 7395 4.586841 TCTTTGTGGTCAATTAAGGTTGGG 59.413 41.667 0.00 0.00 33.32 4.12
5365 7410 2.297880 GGTTGGGTGTTGTTGTATTCCC 59.702 50.000 0.00 0.00 35.85 3.97
5379 7425 1.545841 ATTCCCCGACTGCCTTTTTC 58.454 50.000 0.00 0.00 0.00 2.29
5380 7426 0.538746 TTCCCCGACTGCCTTTTTCC 60.539 55.000 0.00 0.00 0.00 3.13
5388 7434 3.466836 GACTGCCTTTTTCCTTTTTGGG 58.533 45.455 0.00 0.00 36.20 4.12
5395 7441 4.161377 CCTTTTTCCTTTTTGGGTCAGTGA 59.839 41.667 0.00 0.00 36.20 3.41
5454 7502 6.169557 TGGTCTTGTTTACTGTCAGTGTAT 57.830 37.500 16.03 0.00 0.00 2.29
5472 7520 6.813649 CAGTGTATAAATGTGTCAGCACTAGT 59.186 38.462 0.00 0.00 45.44 2.57
5487 7535 0.038251 CTAGTGCTCTGTTGCCGACA 60.038 55.000 0.00 0.00 36.65 4.35
5490 7538 0.380378 GTGCTCTGTTGCCGACAAAA 59.620 50.000 0.00 0.00 37.93 2.44
5498 7546 2.258286 GCCGACAAAAGGCGCATT 59.742 55.556 10.83 5.20 45.58 3.56
5500 7548 0.109504 GCCGACAAAAGGCGCATTAA 60.110 50.000 8.12 0.00 45.58 1.40
5552 7600 1.774894 AAGTGGCAGGCCGGAAGTTA 61.775 55.000 5.05 0.00 39.42 2.24
5560 7608 2.225727 CAGGCCGGAAGTTAACTCAAAC 59.774 50.000 5.05 1.48 0.00 2.93
5563 7611 2.288729 GCCGGAAGTTAACTCAAACGTT 59.711 45.455 5.05 0.00 34.46 3.99
5617 7665 1.416401 CCCCCATGTAATAGAGTGCGT 59.584 52.381 0.00 0.00 0.00 5.24
5639 7688 1.879575 AATACCCAGTAGCTGAGCCA 58.120 50.000 0.00 0.00 32.44 4.75
5662 7711 4.702131 AGAGAAGGCAGCGAATTGTAATTT 59.298 37.500 0.00 0.00 0.00 1.82
5799 7848 1.270907 AGATCGTGAGCAGAGGGTTT 58.729 50.000 0.00 0.00 0.00 3.27
5826 7875 9.898152 TGTACATCACAATTGGTATCAGATTTA 57.102 29.630 10.83 0.00 32.95 1.40
5877 7926 0.178926 TGGTCGGGTTGGGTTCTCTA 60.179 55.000 0.00 0.00 0.00 2.43
5892 7941 4.405036 GGTTCTCTAGTAAAATCCCCGTCT 59.595 45.833 0.00 0.00 0.00 4.18
5893 7942 5.349809 GTTCTCTAGTAAAATCCCCGTCTG 58.650 45.833 0.00 0.00 0.00 3.51
5894 7943 4.607239 TCTCTAGTAAAATCCCCGTCTGT 58.393 43.478 0.00 0.00 0.00 3.41
5895 7944 5.021458 TCTCTAGTAAAATCCCCGTCTGTT 58.979 41.667 0.00 0.00 0.00 3.16
5896 7945 5.080969 TCTAGTAAAATCCCCGTCTGTTG 57.919 43.478 0.00 0.00 0.00 3.33
5897 7946 3.782656 AGTAAAATCCCCGTCTGTTGT 57.217 42.857 0.00 0.00 0.00 3.32
5898 7947 3.671716 AGTAAAATCCCCGTCTGTTGTC 58.328 45.455 0.00 0.00 0.00 3.18
5997 8046 2.543687 CTATTCGGCGGCGGATCGAT 62.544 60.000 30.06 17.25 32.80 3.59
6039 8088 2.039084 AGATCCTCTGGGTGTGTGAAAC 59.961 50.000 0.00 0.00 37.35 2.78
6041 8090 1.843851 TCCTCTGGGTGTGTGAAACTT 59.156 47.619 0.00 0.00 38.04 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 6.814506 ATAGCATATTTCACTCATTGGAGC 57.185 37.500 0.00 0.00 45.42 4.70
151 152 1.511850 TCAACAACTCAGACCGCATG 58.488 50.000 0.00 0.00 0.00 4.06
155 156 0.508641 CGCTTCAACAACTCAGACCG 59.491 55.000 0.00 0.00 0.00 4.79
161 162 4.491676 TGGTATAGTCGCTTCAACAACTC 58.508 43.478 0.00 0.00 0.00 3.01
182 183 2.353208 CCTTCGAGGACTCCACTTCTTG 60.353 54.545 0.00 0.00 37.67 3.02
242 444 1.333931 GCTCTGACACGACCGATATCA 59.666 52.381 3.12 0.00 0.00 2.15
265 467 4.156008 ACTTCAAACACAGACAACCAACTC 59.844 41.667 0.00 0.00 0.00 3.01
269 471 2.675844 CGACTTCAAACACAGACAACCA 59.324 45.455 0.00 0.00 0.00 3.67
275 477 2.572191 ACGTCGACTTCAAACACAGA 57.428 45.000 14.70 0.00 0.00 3.41
296 498 1.466856 TGCTATACCAACCTCGTCGT 58.533 50.000 0.00 0.00 0.00 4.34
315 517 1.240256 TTTTATCGCACCGCAACCTT 58.760 45.000 0.00 0.00 0.00 3.50
333 535 1.675641 GGGCCTCGCAACACTGATT 60.676 57.895 0.84 0.00 0.00 2.57
376 578 4.062183 CGCTTTCCTCAATTGCGC 57.938 55.556 0.00 0.00 40.15 6.09
381 583 1.732259 CGCAGTTACGCTTTCCTCAAT 59.268 47.619 0.00 0.00 0.00 2.57
401 603 4.212847 CCATAGCAATGCAGATACACACTC 59.787 45.833 8.35 0.00 0.00 3.51
428 630 4.393834 TGCCTAAGTTGCTTGTGTATCAA 58.606 39.130 0.00 0.00 34.61 2.57
429 631 4.014569 TGCCTAAGTTGCTTGTGTATCA 57.985 40.909 0.00 0.00 0.00 2.15
430 632 6.662616 CATATGCCTAAGTTGCTTGTGTATC 58.337 40.000 0.00 0.00 0.00 2.24
449 651 0.746563 ACCCAAACGGACGGCATATG 60.747 55.000 0.00 0.00 34.64 1.78
450 652 0.463116 GACCCAAACGGACGGCATAT 60.463 55.000 0.00 0.00 34.64 1.78
451 653 1.078988 GACCCAAACGGACGGCATA 60.079 57.895 0.00 0.00 34.64 3.14
452 654 2.359478 GACCCAAACGGACGGCAT 60.359 61.111 0.00 0.00 34.64 4.40
453 655 3.109592 AAGACCCAAACGGACGGCA 62.110 57.895 0.00 0.00 34.64 5.69
454 656 2.281276 AAGACCCAAACGGACGGC 60.281 61.111 0.00 0.00 34.64 5.68
459 703 1.269051 GCAACTTCAAGACCCAAACGG 60.269 52.381 0.00 0.00 37.81 4.44
492 1899 3.585862 CCTACACTGCACGTGATAGTTT 58.414 45.455 22.23 16.95 46.81 2.66
500 1907 1.404479 TTGTCCCCTACACTGCACGT 61.404 55.000 0.00 0.00 38.00 4.49
527 1935 5.186021 GTCTCCTACTCAGATCCTCAACAAA 59.814 44.000 0.00 0.00 0.00 2.83
535 1943 4.142049 CCAAGTTGTCTCCTACTCAGATCC 60.142 50.000 1.45 0.00 0.00 3.36
542 1950 2.037772 CACTGCCAAGTTGTCTCCTACT 59.962 50.000 1.45 0.00 32.98 2.57
561 1969 2.094700 TCGTGCTGTCTCAGGATTACAC 60.095 50.000 0.00 0.00 33.78 2.90
562 1970 2.094700 GTCGTGCTGTCTCAGGATTACA 60.095 50.000 0.00 0.00 33.78 2.41
563 1971 2.094700 TGTCGTGCTGTCTCAGGATTAC 60.095 50.000 0.00 0.42 33.78 1.89
695 2122 0.670854 GCAGGAGAGGACCAACGTTC 60.671 60.000 0.00 0.00 0.00 3.95
698 2125 2.125912 CGCAGGAGAGGACCAACG 60.126 66.667 0.00 0.00 0.00 4.10
716 2143 4.176752 GCAGATCCGTGGACCCCC 62.177 72.222 0.00 0.00 0.00 5.40
798 2225 1.143684 AGCTTGGTGAGGAAGCAAAGA 59.856 47.619 7.20 0.00 46.93 2.52
802 2229 1.004560 CGAGCTTGGTGAGGAAGCA 60.005 57.895 7.20 0.00 46.93 3.91
816 2243 5.914635 TCATTTGAATTTGAACTTCACGAGC 59.085 36.000 0.00 0.00 32.57 5.03
817 2244 7.357859 GCTTCATTTGAATTTGAACTTCACGAG 60.358 37.037 0.00 0.00 32.57 4.18
818 2245 6.417635 GCTTCATTTGAATTTGAACTTCACGA 59.582 34.615 0.00 0.00 32.57 4.35
819 2246 6.575132 GCTTCATTTGAATTTGAACTTCACG 58.425 36.000 0.00 0.00 32.57 4.35
820 2247 6.417635 TCGCTTCATTTGAATTTGAACTTCAC 59.582 34.615 0.00 0.00 32.57 3.18
821 2248 6.502652 TCGCTTCATTTGAATTTGAACTTCA 58.497 32.000 0.00 0.00 33.01 3.02
1565 3019 1.538135 AAGGTGTAGGAAGGGGCGT 60.538 57.895 0.00 0.00 0.00 5.68
1567 3021 0.542333 GAGAAGGTGTAGGAAGGGGC 59.458 60.000 0.00 0.00 0.00 5.80
1594 3048 0.246635 AACTGCTTGGCGTAGTCGAT 59.753 50.000 0.00 0.00 37.61 3.59
1762 3216 4.156922 ACTGACACAAACATTCCAACGAAA 59.843 37.500 0.00 0.00 0.00 3.46
1796 3250 0.461961 CCTCGTCCTCCAAGTCATCC 59.538 60.000 0.00 0.00 0.00 3.51
1970 3424 4.456280 TGTAGAATGCAGAGTACAGTGG 57.544 45.455 0.00 0.00 0.00 4.00
2091 3551 3.677121 CACTGAATCTGCAGTACAGTGTC 59.323 47.826 33.96 18.42 46.80 3.67
2095 3555 3.434641 CCAACACTGAATCTGCAGTACAG 59.565 47.826 24.06 24.06 46.80 2.74
2223 3695 8.201242 ACTATCCCCTGCAAAATTTAAGAAAA 57.799 30.769 0.00 0.00 0.00 2.29
2276 3748 4.770531 GGCTAGGCCCTTTTTCTCTAAAAA 59.229 41.667 4.61 0.00 44.06 1.94
2277 3749 4.341487 GGCTAGGCCCTTTTTCTCTAAAA 58.659 43.478 4.61 0.00 44.06 1.52
2278 3750 3.964411 GGCTAGGCCCTTTTTCTCTAAA 58.036 45.455 4.61 0.00 44.06 1.85
2279 3751 3.646736 GGCTAGGCCCTTTTTCTCTAA 57.353 47.619 4.61 0.00 44.06 2.10
2297 3769 2.123726 ATTCAATGGAGCCGGGGC 60.124 61.111 2.18 0.18 42.33 5.80
2298 3770 0.178981 ATGATTCAATGGAGCCGGGG 60.179 55.000 2.18 0.00 0.00 5.73
2299 3771 1.242076 GATGATTCAATGGAGCCGGG 58.758 55.000 2.18 0.00 0.00 5.73
2300 3772 1.971481 TGATGATTCAATGGAGCCGG 58.029 50.000 0.00 0.00 0.00 6.13
2309 3781 4.527427 TGCTGGGTTTCATTGATGATTCAA 59.473 37.500 0.00 0.00 45.57 2.69
2310 3782 4.087907 TGCTGGGTTTCATTGATGATTCA 58.912 39.130 0.00 0.00 36.56 2.57
2311 3783 4.724074 TGCTGGGTTTCATTGATGATTC 57.276 40.909 0.00 0.00 36.56 2.52
2312 3784 4.529377 ACTTGCTGGGTTTCATTGATGATT 59.471 37.500 0.00 0.00 36.56 2.57
2313 3785 4.091549 ACTTGCTGGGTTTCATTGATGAT 58.908 39.130 0.00 0.00 36.56 2.45
2314 3786 3.499338 ACTTGCTGGGTTTCATTGATGA 58.501 40.909 0.00 0.00 34.44 2.92
2315 3787 3.256383 TGACTTGCTGGGTTTCATTGATG 59.744 43.478 0.00 0.00 0.00 3.07
2316 3788 3.499338 TGACTTGCTGGGTTTCATTGAT 58.501 40.909 0.00 0.00 0.00 2.57
2317 3789 2.886523 CTGACTTGCTGGGTTTCATTGA 59.113 45.455 0.00 0.00 0.00 2.57
2318 3790 2.029649 CCTGACTTGCTGGGTTTCATTG 60.030 50.000 0.00 0.00 32.31 2.82
2319 3791 2.242043 CCTGACTTGCTGGGTTTCATT 58.758 47.619 0.00 0.00 32.31 2.57
2320 3792 1.915141 CCTGACTTGCTGGGTTTCAT 58.085 50.000 0.00 0.00 32.31 2.57
2321 3793 3.419793 CCTGACTTGCTGGGTTTCA 57.580 52.632 0.00 0.00 32.31 2.69
2327 3799 0.037303 ACATGACCCTGACTTGCTGG 59.963 55.000 0.00 0.00 35.50 4.85
2328 3800 2.744202 GTTACATGACCCTGACTTGCTG 59.256 50.000 0.00 0.00 0.00 4.41
2329 3801 2.371841 TGTTACATGACCCTGACTTGCT 59.628 45.455 0.00 0.00 0.00 3.91
2330 3802 2.778299 TGTTACATGACCCTGACTTGC 58.222 47.619 0.00 0.00 0.00 4.01
2331 3803 4.214119 CACTTGTTACATGACCCTGACTTG 59.786 45.833 0.00 0.00 0.00 3.16
2332 3804 4.141482 ACACTTGTTACATGACCCTGACTT 60.141 41.667 0.00 0.00 0.00 3.01
2333 3805 3.391296 ACACTTGTTACATGACCCTGACT 59.609 43.478 0.00 0.00 0.00 3.41
2334 3806 3.740115 ACACTTGTTACATGACCCTGAC 58.260 45.455 0.00 0.00 0.00 3.51
2335 3807 4.431416 AACACTTGTTACATGACCCTGA 57.569 40.909 0.00 0.00 36.32 3.86
2336 3808 6.817765 AATAACACTTGTTACATGACCCTG 57.182 37.500 0.00 0.00 42.55 4.45
2337 3809 7.455058 TGTAATAACACTTGTTACATGACCCT 58.545 34.615 0.00 0.00 40.69 4.34
2338 3810 7.675962 TGTAATAACACTTGTTACATGACCC 57.324 36.000 0.00 0.00 40.69 4.46
2339 3811 7.742963 CGTTGTAATAACACTTGTTACATGACC 59.257 37.037 0.00 0.00 43.56 4.02
2340 3812 7.267600 GCGTTGTAATAACACTTGTTACATGAC 59.732 37.037 0.00 2.01 43.56 3.06
2341 3813 7.171848 AGCGTTGTAATAACACTTGTTACATGA 59.828 33.333 0.00 0.00 43.56 3.07
2342 3814 7.295201 AGCGTTGTAATAACACTTGTTACATG 58.705 34.615 3.95 0.00 43.56 3.21
2343 3815 7.429636 AGCGTTGTAATAACACTTGTTACAT 57.570 32.000 3.95 0.25 43.56 2.29
2344 3816 6.847956 AGCGTTGTAATAACACTTGTTACA 57.152 33.333 3.95 0.00 42.81 2.41
2345 3817 9.649024 TTTAAGCGTTGTAATAACACTTGTTAC 57.351 29.630 3.95 0.00 42.55 2.50
2347 3819 9.228636 CTTTTAAGCGTTGTAATAACACTTGTT 57.771 29.630 0.00 0.00 41.73 2.83
2348 3820 7.858879 CCTTTTAAGCGTTGTAATAACACTTGT 59.141 33.333 0.00 0.00 34.61 3.16
2349 3821 8.071368 TCCTTTTAAGCGTTGTAATAACACTTG 58.929 33.333 0.00 0.00 34.61 3.16
2350 3822 8.156994 TCCTTTTAAGCGTTGTAATAACACTT 57.843 30.769 0.00 0.00 34.61 3.16
2351 3823 7.733402 TCCTTTTAAGCGTTGTAATAACACT 57.267 32.000 0.00 0.00 34.61 3.55
2352 3824 8.785468 TTTCCTTTTAAGCGTTGTAATAACAC 57.215 30.769 0.00 0.00 34.61 3.32
2353 3825 9.453325 CTTTTCCTTTTAAGCGTTGTAATAACA 57.547 29.630 0.00 0.00 0.00 2.41
2354 3826 8.422457 GCTTTTCCTTTTAAGCGTTGTAATAAC 58.578 33.333 0.00 0.00 37.60 1.89
2355 3827 8.510132 GCTTTTCCTTTTAAGCGTTGTAATAA 57.490 30.769 0.00 0.00 37.60 1.40
2365 3837 6.421405 CATGTTGTTGCTTTTCCTTTTAAGC 58.579 36.000 0.00 0.00 45.36 3.09
2366 3838 6.421405 GCATGTTGTTGCTTTTCCTTTTAAG 58.579 36.000 0.00 0.00 39.57 1.85
2367 3839 5.295540 GGCATGTTGTTGCTTTTCCTTTTAA 59.704 36.000 0.00 0.00 42.38 1.52
2368 3840 4.813697 GGCATGTTGTTGCTTTTCCTTTTA 59.186 37.500 0.00 0.00 42.38 1.52
2369 3841 3.627123 GGCATGTTGTTGCTTTTCCTTTT 59.373 39.130 0.00 0.00 42.38 2.27
2370 3842 3.205338 GGCATGTTGTTGCTTTTCCTTT 58.795 40.909 0.00 0.00 42.38 3.11
2371 3843 2.170187 TGGCATGTTGTTGCTTTTCCTT 59.830 40.909 0.00 0.00 42.38 3.36
2372 3844 1.761784 TGGCATGTTGTTGCTTTTCCT 59.238 42.857 0.00 0.00 42.38 3.36
2373 3845 2.137523 CTGGCATGTTGTTGCTTTTCC 58.862 47.619 0.00 0.00 42.38 3.13
2374 3846 2.137523 CCTGGCATGTTGTTGCTTTTC 58.862 47.619 0.00 0.00 42.38 2.29
2375 3847 1.202675 CCCTGGCATGTTGTTGCTTTT 60.203 47.619 0.00 0.00 42.38 2.27
2376 3848 0.393820 CCCTGGCATGTTGTTGCTTT 59.606 50.000 0.00 0.00 42.38 3.51
2377 3849 1.474332 CCCCTGGCATGTTGTTGCTT 61.474 55.000 0.00 0.00 42.38 3.91
2378 3850 1.909781 CCCCTGGCATGTTGTTGCT 60.910 57.895 0.00 0.00 42.38 3.91
2379 3851 2.658422 CCCCTGGCATGTTGTTGC 59.342 61.111 0.00 0.00 42.01 4.17
2380 3852 0.831288 TTCCCCCTGGCATGTTGTTG 60.831 55.000 0.00 0.00 0.00 3.33
2381 3853 0.116940 ATTCCCCCTGGCATGTTGTT 59.883 50.000 0.00 0.00 0.00 2.83
2382 3854 1.006813 TATTCCCCCTGGCATGTTGT 58.993 50.000 0.00 0.00 0.00 3.32
2383 3855 1.756538 GTTATTCCCCCTGGCATGTTG 59.243 52.381 0.00 0.00 0.00 3.33
2384 3856 1.360852 TGTTATTCCCCCTGGCATGTT 59.639 47.619 0.00 0.00 0.00 2.71
2385 3857 1.006813 TGTTATTCCCCCTGGCATGT 58.993 50.000 0.00 0.00 0.00 3.21
2386 3858 1.402787 GTGTTATTCCCCCTGGCATG 58.597 55.000 0.00 0.00 0.00 4.06
2387 3859 0.261696 GGTGTTATTCCCCCTGGCAT 59.738 55.000 0.00 0.00 0.00 4.40
2388 3860 1.694856 GGTGTTATTCCCCCTGGCA 59.305 57.895 0.00 0.00 0.00 4.92
2389 3861 1.076265 GGGTGTTATTCCCCCTGGC 60.076 63.158 0.00 0.00 39.08 4.85
2409 3881 0.811281 GATTGTTTCTCCCGCCAAGG 59.189 55.000 0.00 0.00 40.63 3.61
2410 3882 1.470098 CAGATTGTTTCTCCCGCCAAG 59.530 52.381 0.00 0.00 29.93 3.61
2411 3883 1.073125 TCAGATTGTTTCTCCCGCCAA 59.927 47.619 0.00 0.00 29.93 4.52
2412 3884 0.690192 TCAGATTGTTTCTCCCGCCA 59.310 50.000 0.00 0.00 29.93 5.69
2413 3885 2.044123 ATCAGATTGTTTCTCCCGCC 57.956 50.000 0.00 0.00 29.93 6.13
2414 3886 4.192317 ACTAATCAGATTGTTTCTCCCGC 58.808 43.478 5.85 0.00 29.93 6.13
2415 3887 6.806751 TCTACTAATCAGATTGTTTCTCCCG 58.193 40.000 5.85 0.00 29.93 5.14
2507 3980 1.061799 CGCAATTCAAGTGCTCGCAC 61.062 55.000 13.86 13.86 46.50 5.34
2510 3983 0.235665 ACACGCAATTCAAGTGCTCG 59.764 50.000 8.41 1.02 39.95 5.03
2527 4000 4.584874 TCCTCAAAATTAATGGCGAGACA 58.415 39.130 8.94 0.00 0.00 3.41
2576 4063 8.977412 TGAGGTATTTTCCTTTTTCAAACTCTT 58.023 29.630 0.00 0.00 38.02 2.85
2579 4066 9.764363 GAATGAGGTATTTTCCTTTTTCAAACT 57.236 29.630 0.00 0.00 38.02 2.66
2603 4094 4.272991 GCCAATCAAATTGCAAACACTGAA 59.727 37.500 1.71 0.00 38.92 3.02
2605 4096 3.810941 AGCCAATCAAATTGCAAACACTG 59.189 39.130 1.71 0.00 38.92 3.66
2607 4098 4.816786 AAGCCAATCAAATTGCAAACAC 57.183 36.364 1.71 0.00 38.92 3.32
2608 4099 5.411977 CCATAAGCCAATCAAATTGCAAACA 59.588 36.000 1.71 0.00 38.92 2.83
2609 4100 5.412286 ACCATAAGCCAATCAAATTGCAAAC 59.588 36.000 1.71 0.00 38.92 2.93
2615 4128 6.855763 TGAAGACCATAAGCCAATCAAATT 57.144 33.333 0.00 0.00 0.00 1.82
2740 4296 6.569226 GCACACAGAAGCTTAGATTTGAATGT 60.569 38.462 0.00 0.00 0.00 2.71
2942 4633 5.538053 TGCTACAAAATTCATGGGAAACAGA 59.462 36.000 0.00 0.00 36.43 3.41
3224 4917 4.649674 CCTATCTTACTACCAACCTGCAGA 59.350 45.833 17.39 0.00 0.00 4.26
3276 4979 9.348476 TCAGTTAGCAATGTATAATATGCCAAA 57.652 29.630 0.00 0.00 39.59 3.28
3277 4980 8.916628 TCAGTTAGCAATGTATAATATGCCAA 57.083 30.769 0.00 0.00 39.59 4.52
3278 4981 8.916628 TTCAGTTAGCAATGTATAATATGCCA 57.083 30.769 0.00 0.00 39.59 4.92
3289 4992 7.829725 TGAAGCATTATTTCAGTTAGCAATGT 58.170 30.769 0.00 0.00 31.35 2.71
3351 5054 6.650427 ACTTGGGACTTGAATTAAAAGGAC 57.350 37.500 5.59 0.62 0.00 3.85
3365 5068 1.692519 ACTACGCTGAAACTTGGGACT 59.307 47.619 0.00 0.00 0.00 3.85
3397 5101 4.819105 TTGTACTACAACCATCTGAGGG 57.181 45.455 6.84 6.84 32.34 4.30
3445 5149 7.374491 GCAAATAGAGAAGAAAACGCATCATAC 59.626 37.037 0.00 0.00 0.00 2.39
3483 5187 8.220755 TCAAATGCTCAACTAAGTTAAACTGT 57.779 30.769 0.00 0.00 0.00 3.55
3488 5192 9.162764 GGTCTATCAAATGCTCAACTAAGTTAA 57.837 33.333 0.00 0.00 0.00 2.01
3496 5200 5.586243 TGCTAAGGTCTATCAAATGCTCAAC 59.414 40.000 0.00 0.00 0.00 3.18
3500 5204 5.749462 AGTTGCTAAGGTCTATCAAATGCT 58.251 37.500 0.00 0.00 0.00 3.79
3522 5226 2.093973 CCCTGACCACTTGCTACTGTAG 60.094 54.545 10.48 10.48 0.00 2.74
3524 5228 0.687354 CCCTGACCACTTGCTACTGT 59.313 55.000 0.00 0.00 0.00 3.55
3526 5230 0.178903 TCCCCTGACCACTTGCTACT 60.179 55.000 0.00 0.00 0.00 2.57
3527 5231 0.912486 ATCCCCTGACCACTTGCTAC 59.088 55.000 0.00 0.00 0.00 3.58
3528 5232 2.116238 GTATCCCCTGACCACTTGCTA 58.884 52.381 0.00 0.00 0.00 3.49
3529 5233 0.912486 GTATCCCCTGACCACTTGCT 59.088 55.000 0.00 0.00 0.00 3.91
3530 5234 0.107165 GGTATCCCCTGACCACTTGC 60.107 60.000 0.00 0.00 35.65 4.01
3531 5235 1.584724 AGGTATCCCCTGACCACTTG 58.415 55.000 0.00 0.00 44.08 3.16
3532 5236 1.916181 CAAGGTATCCCCTGACCACTT 59.084 52.381 0.00 0.00 45.47 3.16
3533 5237 1.080498 TCAAGGTATCCCCTGACCACT 59.920 52.381 0.00 0.00 45.47 4.00
3534 5238 1.580059 TCAAGGTATCCCCTGACCAC 58.420 55.000 0.00 0.00 45.47 4.16
3535 5239 2.587060 ATCAAGGTATCCCCTGACCA 57.413 50.000 0.00 0.00 45.47 4.02
3536 5240 3.953542 AAATCAAGGTATCCCCTGACC 57.046 47.619 0.00 0.00 45.47 4.02
3537 5241 7.060421 TCAATAAAATCAAGGTATCCCCTGAC 58.940 38.462 0.00 0.00 45.47 3.51
3558 5262 2.633967 TCAACCAATGGCAGCTTTCAAT 59.366 40.909 0.00 0.00 0.00 2.57
3569 5273 1.666209 GCCACGGGATCAACCAATGG 61.666 60.000 0.00 0.00 43.75 3.16
3578 5282 2.948979 TGTATGATTTTGCCACGGGATC 59.051 45.455 0.00 0.00 0.00 3.36
3625 5335 5.416013 AGCCTTTAATGAGAAAAGTAGCCAC 59.584 40.000 0.00 0.00 33.05 5.01
3713 5427 6.857437 AGTTAATTTCTAAAATGCCCAGCT 57.143 33.333 0.00 0.00 0.00 4.24
3714 5428 7.064609 GGAAAGTTAATTTCTAAAATGCCCAGC 59.935 37.037 5.16 0.00 45.62 4.85
3715 5429 8.314021 AGGAAAGTTAATTTCTAAAATGCCCAG 58.686 33.333 5.16 0.00 45.62 4.45
3733 5447 5.774690 TGCAGGTGAATGAATTAGGAAAGTT 59.225 36.000 0.00 0.00 0.00 2.66
3836 5550 8.432013 TGCTTCAGTTCACTACAATGGATATAT 58.568 33.333 0.00 0.00 0.00 0.86
3896 5660 1.272490 TCTGGCAAAGGACTGTCTACG 59.728 52.381 7.85 0.00 0.00 3.51
3897 5661 2.300437 ACTCTGGCAAAGGACTGTCTAC 59.700 50.000 7.85 0.00 0.00 2.59
3937 5799 9.461312 AGAAAGTTGATGCATAATAGGTTTACA 57.539 29.630 0.00 0.00 0.00 2.41
3972 5834 4.935205 TCTCTTGCAACGTTATGTAAGCAT 59.065 37.500 11.79 0.00 41.19 3.79
3985 5847 2.306847 TGAAAGGGGTTCTCTTGCAAC 58.693 47.619 0.00 0.00 37.13 4.17
3986 5848 2.746279 TGAAAGGGGTTCTCTTGCAA 57.254 45.000 0.00 0.00 37.13 4.08
3987 5849 2.376518 AGATGAAAGGGGTTCTCTTGCA 59.623 45.455 0.00 0.00 37.13 4.08
3988 5850 3.078891 AGATGAAAGGGGTTCTCTTGC 57.921 47.619 0.00 0.00 37.13 4.01
3989 5851 7.524717 TTTTTAGATGAAAGGGGTTCTCTTG 57.475 36.000 0.00 0.00 37.13 3.02
3990 5852 9.822727 TTATTTTTAGATGAAAGGGGTTCTCTT 57.177 29.630 0.00 0.00 37.13 2.85
3991 5853 9.997172 ATTATTTTTAGATGAAAGGGGTTCTCT 57.003 29.630 0.00 0.00 37.13 3.10
4010 5872 9.709495 TGCTTTCTCTTGCAACATTATTATTTT 57.291 25.926 0.00 0.00 36.15 1.82
4011 5873 9.362539 CTGCTTTCTCTTGCAACATTATTATTT 57.637 29.630 0.00 0.00 38.81 1.40
4012 5874 8.742777 TCTGCTTTCTCTTGCAACATTATTATT 58.257 29.630 0.00 0.00 38.81 1.40
4013 5875 8.284945 TCTGCTTTCTCTTGCAACATTATTAT 57.715 30.769 0.00 0.00 38.81 1.28
4014 5876 7.627088 GCTCTGCTTTCTCTTGCAACATTATTA 60.627 37.037 0.00 0.00 38.81 0.98
4015 5877 6.579666 TCTGCTTTCTCTTGCAACATTATT 57.420 33.333 0.00 0.00 38.81 1.40
4016 5878 5.392811 GCTCTGCTTTCTCTTGCAACATTAT 60.393 40.000 0.00 0.00 38.81 1.28
4017 5879 4.083110 GCTCTGCTTTCTCTTGCAACATTA 60.083 41.667 0.00 0.00 38.81 1.90
4018 5880 3.305199 GCTCTGCTTTCTCTTGCAACATT 60.305 43.478 0.00 0.00 38.81 2.71
4019 5881 2.228343 GCTCTGCTTTCTCTTGCAACAT 59.772 45.455 0.00 0.00 38.81 2.71
4020 5882 1.605710 GCTCTGCTTTCTCTTGCAACA 59.394 47.619 0.00 0.00 38.81 3.33
4021 5883 1.068679 GGCTCTGCTTTCTCTTGCAAC 60.069 52.381 0.00 0.00 38.81 4.17
4034 5896 1.115326 AACCACAAAAGGGGCTCTGC 61.115 55.000 0.00 0.00 0.00 4.26
4043 5905 8.125448 TCAAAAACTTCAACAAAACCACAAAAG 58.875 29.630 0.00 0.00 0.00 2.27
4078 5940 9.220767 GTCAAGAATAAGAAAATACTCACCTGT 57.779 33.333 0.00 0.00 0.00 4.00
4086 5948 8.169268 CAGACGTGGTCAAGAATAAGAAAATAC 58.831 37.037 0.00 0.00 34.60 1.89
4131 5993 2.576893 CTGCATAGTACCGTGCGCG 61.577 63.158 13.88 13.88 44.11 6.86
4134 5996 2.343101 TGTTTCTGCATAGTACCGTGC 58.657 47.619 11.92 11.92 41.61 5.34
4138 6000 5.681639 ACCCTATTGTTTCTGCATAGTACC 58.318 41.667 0.00 0.00 0.00 3.34
4159 6026 4.994852 TGTCACATGCTGTTCTAAAGTACC 59.005 41.667 0.00 0.00 0.00 3.34
4176 6126 7.103641 GGACTGGTAAAGAAGAATATGTCACA 58.896 38.462 0.00 0.00 0.00 3.58
4177 6127 7.064728 GTGGACTGGTAAAGAAGAATATGTCAC 59.935 40.741 0.00 0.00 0.00 3.67
4275 6264 4.081420 GCCCTGAGTAGAGACAAAGATGAA 60.081 45.833 0.00 0.00 0.00 2.57
4291 6280 3.875727 CAGTGAGATTACATTGCCCTGAG 59.124 47.826 0.00 0.00 0.00 3.35
4321 6310 3.877508 TCTGCATGATGCTGAAAGAGATG 59.122 43.478 22.10 0.00 46.01 2.90
4470 6459 1.391485 CAGACGAGAATGCAGGAAACG 59.609 52.381 0.00 0.00 0.00 3.60
4529 6518 4.639135 AGGAAACAGAAAAGTGAACTGC 57.361 40.909 0.00 0.00 35.38 4.40
4543 6532 4.985538 AGAACCTGCAGAATTAGGAAACA 58.014 39.130 17.39 0.00 37.52 2.83
4544 6533 7.011857 CAGATAGAACCTGCAGAATTAGGAAAC 59.988 40.741 17.39 0.00 37.52 2.78
4576 6565 0.040067 CCTTGTCGTCTGCTTTTGCC 60.040 55.000 0.00 0.00 46.87 4.52
4594 6583 1.225704 CTTGGCCAGATCCTCCACC 59.774 63.158 5.11 0.00 0.00 4.61
4713 6702 2.501610 GATGGCACGAGGACTCCC 59.498 66.667 0.00 0.00 0.00 4.30
4753 6742 3.181493 GCATAGCTTTGATGGTGGAGTTG 60.181 47.826 8.49 0.00 0.00 3.16
4799 6799 3.191581 TCAGGCGTTTCTAGTCTTCTCTG 59.808 47.826 0.00 0.00 0.00 3.35
4800 6800 3.191791 GTCAGGCGTTTCTAGTCTTCTCT 59.808 47.826 0.00 0.00 0.00 3.10
4801 6801 3.503891 GTCAGGCGTTTCTAGTCTTCTC 58.496 50.000 0.00 0.00 0.00 2.87
4802 6802 2.231721 GGTCAGGCGTTTCTAGTCTTCT 59.768 50.000 0.00 0.00 0.00 2.85
4831 6859 4.871993 GTGAGTCTGCATCACATTAAGG 57.128 45.455 12.91 0.00 45.18 2.69
4840 6868 1.098869 TCCTCGAGTGAGTCTGCATC 58.901 55.000 12.31 0.00 40.85 3.91
4861 6889 0.803768 CAGGCAGATCGTCGTCCTTG 60.804 60.000 0.00 0.00 0.00 3.61
4904 6932 4.157656 CCAATAACAAAGAATGCGAGGGAA 59.842 41.667 0.00 0.00 0.00 3.97
4905 6933 3.694072 CCAATAACAAAGAATGCGAGGGA 59.306 43.478 0.00 0.00 0.00 4.20
4906 6934 3.443681 ACCAATAACAAAGAATGCGAGGG 59.556 43.478 0.00 0.00 0.00 4.30
4923 6951 4.761739 CACAGTTCAGTTCATGGTACCAAT 59.238 41.667 20.76 4.78 0.00 3.16
4928 6956 3.324846 AGAGCACAGTTCAGTTCATGGTA 59.675 43.478 0.00 0.00 0.00 3.25
4971 7008 3.291585 CAGCACAAAAAGTTCAGCTACG 58.708 45.455 0.00 0.00 0.00 3.51
4975 7012 1.211743 GGCAGCACAAAAAGTTCAGC 58.788 50.000 0.00 0.00 0.00 4.26
4976 7013 2.195922 GTGGCAGCACAAAAAGTTCAG 58.804 47.619 0.00 0.00 0.00 3.02
4978 7015 1.199624 CGTGGCAGCACAAAAAGTTC 58.800 50.000 0.00 0.00 0.00 3.01
4980 7017 1.437160 CCGTGGCAGCACAAAAAGT 59.563 52.632 0.00 0.00 0.00 2.66
4981 7018 1.950630 GCCGTGGCAGCACAAAAAG 60.951 57.895 5.89 0.00 41.49 2.27
5071 7111 3.857521 AACCTGTGAGCCCCGGGTA 62.858 63.158 21.85 0.00 40.76 3.69
5083 7123 7.372260 AGATTAGATAGAATGCTCAACCTGT 57.628 36.000 0.00 0.00 0.00 4.00
5242 7282 3.614616 CCTCAGTACGAAATTCTGCAGTC 59.385 47.826 14.67 2.52 0.00 3.51
5271 7314 4.862371 ACAGCTCTCCCTATAGGCTATAC 58.138 47.826 13.85 2.46 34.51 1.47
5322 7365 5.940470 ACCTTAATTGACCACAAAGAGCTAG 59.060 40.000 0.00 0.00 39.54 3.42
5350 7395 2.482721 CAGTCGGGGAATACAACAACAC 59.517 50.000 0.00 0.00 0.00 3.32
5365 7410 3.123050 CAAAAAGGAAAAAGGCAGTCGG 58.877 45.455 0.00 0.00 0.00 4.79
5379 7425 6.345096 ACAATATTCACTGACCCAAAAAGG 57.655 37.500 0.00 0.00 37.03 3.11
5380 7426 9.757227 TTAAACAATATTCACTGACCCAAAAAG 57.243 29.630 0.00 0.00 0.00 2.27
5395 7441 9.131791 AGCCGTAGATCCATTTTAAACAATATT 57.868 29.630 0.00 0.00 0.00 1.28
5472 7520 0.662619 CTTTTGTCGGCAACAGAGCA 59.337 50.000 10.36 0.00 39.58 4.26
5483 7531 1.466950 TCCTTAATGCGCCTTTTGTCG 59.533 47.619 4.18 0.00 0.00 4.35
5487 7535 1.474077 CTGCTCCTTAATGCGCCTTTT 59.526 47.619 4.18 0.00 0.00 2.27
5490 7538 0.462759 GTCTGCTCCTTAATGCGCCT 60.463 55.000 4.18 0.00 0.00 5.52
5498 7546 3.458044 TCTTCTCCTGTCTGCTCCTTA 57.542 47.619 0.00 0.00 0.00 2.69
5500 7548 2.178580 CTTCTTCTCCTGTCTGCTCCT 58.821 52.381 0.00 0.00 0.00 3.69
5552 7600 1.033202 ACGGCCCAAACGTTTGAGTT 61.033 50.000 36.20 16.19 42.70 3.01
5600 7648 7.095355 GGGTATTTAACGCACTCTATTACATGG 60.095 40.741 0.00 0.00 40.66 3.66
5601 7649 7.439955 TGGGTATTTAACGCACTCTATTACATG 59.560 37.037 0.00 0.00 45.31 3.21
5617 7665 3.778075 TGGCTCAGCTACTGGGTATTTAA 59.222 43.478 0.00 0.00 33.88 1.52
5639 7688 3.334583 TTACAATTCGCTGCCTTCTCT 57.665 42.857 0.00 0.00 0.00 3.10
5662 7711 1.777272 TCTGAGAGGGGATCGAGATCA 59.223 52.381 14.21 0.00 39.54 2.92
5858 7907 0.178926 TAGAGAACCCAACCCGACCA 60.179 55.000 0.00 0.00 0.00 4.02
5877 7926 3.326880 AGACAACAGACGGGGATTTTACT 59.673 43.478 0.00 0.00 0.00 2.24
5892 7941 0.465460 GACCCAGCCAACAGACAACA 60.465 55.000 0.00 0.00 0.00 3.33
5893 7942 0.179018 AGACCCAGCCAACAGACAAC 60.179 55.000 0.00 0.00 0.00 3.32
5894 7943 0.179020 CAGACCCAGCCAACAGACAA 60.179 55.000 0.00 0.00 0.00 3.18
5895 7944 1.451504 CAGACCCAGCCAACAGACA 59.548 57.895 0.00 0.00 0.00 3.41
5896 7945 1.968540 GCAGACCCAGCCAACAGAC 60.969 63.158 0.00 0.00 0.00 3.51
5897 7946 2.431683 GCAGACCCAGCCAACAGA 59.568 61.111 0.00 0.00 0.00 3.41
5898 7947 3.052082 CGCAGACCCAGCCAACAG 61.052 66.667 0.00 0.00 0.00 3.16
5964 8013 2.894240 GAATAGTTCACCGCCGCCGA 62.894 60.000 0.00 0.00 36.29 5.54
5997 8046 1.301401 GTGCAACCGTGAGCTACCA 60.301 57.895 0.00 0.00 0.00 3.25
6039 8088 1.885163 AACCGAGTAGCCCACCGAAG 61.885 60.000 0.00 0.00 0.00 3.79
6041 8090 2.283388 AACCGAGTAGCCCACCGA 60.283 61.111 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.