Multiple sequence alignment - TraesCS4A01G062100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G062100 chr4A 100.000 7465 0 0 1 7465 58885041 58877577 0.000000e+00 13786.0
1 TraesCS4A01G062100 chr4B 92.769 5034 233 62 689 5661 495597109 495592146 0.000000e+00 7158.0
2 TraesCS4A01G062100 chr4B 92.170 1341 58 25 5919 7218 495591923 495590589 0.000000e+00 1851.0
3 TraesCS4A01G062100 chr4B 91.854 712 42 8 1 700 495597838 495597131 0.000000e+00 979.0
4 TraesCS4A01G062100 chr4B 93.333 210 11 1 5642 5851 495592134 495591928 2.620000e-79 307.0
5 TraesCS4A01G062100 chr4B 92.000 150 9 3 7319 7465 495590558 495590409 2.730000e-49 207.0
6 TraesCS4A01G062100 chr4D 94.341 3004 125 22 2934 5914 401088496 401085515 0.000000e+00 4564.0
7 TraesCS4A01G062100 chr4D 94.230 2409 110 17 2470 4872 417630743 417628358 0.000000e+00 3651.0
8 TraesCS4A01G062100 chr4D 91.566 2644 125 43 4878 7465 417628269 417625668 0.000000e+00 3557.0
9 TraesCS4A01G062100 chr4D 92.232 2137 107 26 836 2950 401090781 401088682 0.000000e+00 2972.0
10 TraesCS4A01G062100 chr4D 92.746 1544 60 16 692 2214 417632362 417630850 0.000000e+00 2183.0
11 TraesCS4A01G062100 chr4D 90.952 1492 59 34 6032 7465 401085516 401084043 0.000000e+00 1938.0
12 TraesCS4A01G062100 chr4D 96.284 592 17 3 1 587 417633482 417632891 0.000000e+00 966.0
13 TraesCS4A01G062100 chr4D 94.932 592 25 3 1 587 401094715 401094124 0.000000e+00 922.0
14 TraesCS4A01G062100 chr4D 89.116 147 11 3 689 834 401092778 401092636 2.140000e-40 178.0
15 TraesCS4A01G062100 chr4D 88.430 121 13 1 580 700 417632509 417632390 2.170000e-30 145.0
16 TraesCS4A01G062100 chr7D 86.957 207 26 1 2327 2533 147003350 147003555 1.620000e-56 231.0
17 TraesCS4A01G062100 chr2A 83.203 256 40 3 2327 2581 227833254 227833507 1.620000e-56 231.0
18 TraesCS4A01G062100 chr7A 86.341 205 27 1 2329 2533 148483546 148483749 9.750000e-54 222.0
19 TraesCS4A01G062100 chr7B 85.507 207 29 1 2327 2533 109928485 109928690 1.630000e-51 215.0
20 TraesCS4A01G062100 chrUn 100.000 30 0 0 5519 5548 36547635 36547664 1.000000e-03 56.5
21 TraesCS4A01G062100 chrUn 100.000 30 0 0 5519 5548 186205832 186205803 1.000000e-03 56.5
22 TraesCS4A01G062100 chrUn 100.000 30 0 0 5519 5548 434806169 434806198 1.000000e-03 56.5
23 TraesCS4A01G062100 chrUn 100.000 30 0 0 5519 5548 464745809 464745780 1.000000e-03 56.5
24 TraesCS4A01G062100 chr6D 100.000 30 0 0 5519 5548 124520116 124520145 1.000000e-03 56.5
25 TraesCS4A01G062100 chr1D 100.000 30 0 0 5519 5548 43234121 43234092 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G062100 chr4A 58877577 58885041 7464 True 13786.0 13786 100.0000 1 7465 1 chr4A.!!$R1 7464
1 TraesCS4A01G062100 chr4B 495590409 495597838 7429 True 2100.4 7158 92.4252 1 7465 5 chr4B.!!$R1 7464
2 TraesCS4A01G062100 chr4D 401084043 401094715 10672 True 2114.8 4564 92.3146 1 7465 5 chr4D.!!$R1 7464
3 TraesCS4A01G062100 chr4D 417625668 417633482 7814 True 2100.4 3651 92.6512 1 7465 5 chr4D.!!$R2 7464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.837691 AGCCTGTGGACATGGACTCA 60.838 55.000 0.00 0.0 0.00 3.41 F
1539 4678 0.320073 CGGAGACCGTAAAACCTGCA 60.320 55.000 1.80 0.0 42.73 4.41 F
1541 4680 1.534163 GGAGACCGTAAAACCTGCAAC 59.466 52.381 0.00 0.0 0.00 4.17 F
3094 6490 1.539388 TGTTGCCAAATACCTTGCTCG 59.461 47.619 0.00 0.0 33.27 5.03 F
3801 7202 1.204704 TGACAGTGGTCCAGCTAATCG 59.795 52.381 0.00 0.0 43.65 3.34 F
4916 8414 1.069204 AGATGACATGCGCTATCGGTT 59.931 47.619 9.73 0.0 35.95 4.44 F
5864 9405 1.335496 CTGGGTAGACTAGCTCGCTTC 59.665 57.143 11.30 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 4897 0.307760 GTTGCAACCTCTCCGTTGTG 59.692 55.000 19.15 0.00 44.10 3.33 R
2378 5564 1.002069 TGGACAGGGCATCCAAATCT 58.998 50.000 2.19 0.00 43.43 2.40 R
3400 6801 1.064758 TGGCAACCTATGGATGTGGAC 60.065 52.381 0.00 0.00 0.00 4.02 R
4217 7618 4.106925 CCCTCCCTCACTGCTGGC 62.107 72.222 0.00 0.00 0.00 4.85 R
5708 9246 0.681564 TCCACAACACCGGCTGTTTT 60.682 50.000 16.56 10.13 41.50 2.43 R
6173 9816 0.247460 CCAGAGGTCTTGCATCGTCA 59.753 55.000 0.00 0.00 32.37 4.35 R
7380 11098 0.179009 TGAGCAGCTAATGGATGGGC 60.179 55.000 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
264 265 2.125147 ATGATGACGGCGGTGGTG 60.125 61.111 13.24 0.00 0.00 4.17
321 322 0.837691 AGCCTGTGGACATGGACTCA 60.838 55.000 0.00 0.00 0.00 3.41
379 387 3.376546 GGAGTTCCAAATCATCAGTGCTC 59.623 47.826 0.00 0.00 35.64 4.26
408 416 3.585990 GGCCATGCAATCGTCGGG 61.586 66.667 0.00 0.00 0.00 5.14
419 427 2.320745 ATCGTCGGGGTTATTTGGTC 57.679 50.000 0.00 0.00 0.00 4.02
437 445 6.839124 TTGGTCGACTGGAATAGTAGTAAA 57.161 37.500 16.46 0.00 40.53 2.01
476 484 7.264221 TGGCCATGCAATAGTAAATTTTACTG 58.736 34.615 25.25 14.42 0.00 2.74
479 487 7.973388 GCCATGCAATAGTAAATTTTACTGTGA 59.027 33.333 25.25 11.11 0.00 3.58
577 592 5.273170 TCGAGCTGTGTTTTGAAAATTGAG 58.727 37.500 0.00 0.00 0.00 3.02
578 593 4.442073 CGAGCTGTGTTTTGAAAATTGAGG 59.558 41.667 0.00 0.00 0.00 3.86
588 603 2.253603 GAAAATTGAGGCATGCGTCAC 58.746 47.619 35.61 22.83 40.00 3.67
695 1937 4.201676 CGGAGTTGGAAAAAGCAAAAACAC 60.202 41.667 0.00 0.00 0.00 3.32
718 2002 1.924731 TCCAGTGACAGTGGTAGGAG 58.075 55.000 25.39 2.84 39.71 3.69
721 2005 2.632996 CCAGTGACAGTGGTAGGAGAAA 59.367 50.000 19.70 0.00 33.97 2.52
722 2006 3.071023 CCAGTGACAGTGGTAGGAGAAAA 59.929 47.826 19.70 0.00 33.97 2.29
723 2007 4.263068 CCAGTGACAGTGGTAGGAGAAAAT 60.263 45.833 19.70 0.00 33.97 1.82
724 2008 5.046591 CCAGTGACAGTGGTAGGAGAAAATA 60.047 44.000 19.70 0.00 33.97 1.40
725 2009 6.464222 CAGTGACAGTGGTAGGAGAAAATAA 58.536 40.000 2.02 0.00 0.00 1.40
729 2013 6.042781 TGACAGTGGTAGGAGAAAATAAGTGT 59.957 38.462 0.00 0.00 0.00 3.55
795 2079 4.660938 GCCGGGCTTCTTGTGGGT 62.661 66.667 12.87 0.00 0.00 4.51
814 2098 2.351455 GTTCTAAGTGAGCCTGCCTTC 58.649 52.381 0.00 0.00 0.00 3.46
815 2099 1.644509 TCTAAGTGAGCCTGCCTTCA 58.355 50.000 0.00 0.00 0.00 3.02
834 2118 1.676006 CAAACCCAACACTGACAGACC 59.324 52.381 10.08 0.00 0.00 3.85
885 4022 2.029666 GATCCCAGACGGCCATCG 59.970 66.667 2.24 0.00 45.88 3.84
1277 4416 0.387622 GTCGTCCGTTGGTCGATTGA 60.388 55.000 8.31 0.00 43.79 2.57
1279 4418 1.744522 TCGTCCGTTGGTCGATTGATA 59.255 47.619 1.14 0.00 38.20 2.15
1300 4439 2.814336 ACCTGATTGCTCGTTTTCCTTC 59.186 45.455 0.00 0.00 0.00 3.46
1302 4441 4.253685 CCTGATTGCTCGTTTTCCTTCTA 58.746 43.478 0.00 0.00 0.00 2.10
1392 4531 2.231964 TGAGTCCATTCTGGCATTTTGC 59.768 45.455 0.00 0.00 44.08 3.68
1397 4536 3.579586 TCCATTCTGGCATTTTGCTCTTT 59.420 39.130 0.00 0.00 44.28 2.52
1519 4658 6.318628 GTGTGAACACATGTTTTCAGTACAA 58.681 36.000 24.12 8.27 45.75 2.41
1521 4660 5.451023 GTGAACACATGTTTTCAGTACAACG 59.549 40.000 24.12 0.00 38.56 4.10
1522 4661 4.545823 ACACATGTTTTCAGTACAACGG 57.454 40.909 0.00 0.00 0.00 4.44
1523 4662 4.193090 ACACATGTTTTCAGTACAACGGA 58.807 39.130 0.00 0.00 0.00 4.69
1524 4663 4.272504 ACACATGTTTTCAGTACAACGGAG 59.727 41.667 0.00 0.00 0.00 4.63
1525 4664 4.509970 CACATGTTTTCAGTACAACGGAGA 59.490 41.667 0.00 0.00 0.00 3.71
1526 4665 4.510340 ACATGTTTTCAGTACAACGGAGAC 59.490 41.667 0.00 0.00 0.00 3.36
1527 4666 3.460103 TGTTTTCAGTACAACGGAGACC 58.540 45.455 0.00 0.00 0.00 3.85
1538 4677 2.452767 CGGAGACCGTAAAACCTGC 58.547 57.895 1.80 0.00 42.73 4.85
1539 4678 0.320073 CGGAGACCGTAAAACCTGCA 60.320 55.000 1.80 0.00 42.73 4.41
1540 4679 1.874739 CGGAGACCGTAAAACCTGCAA 60.875 52.381 1.80 0.00 42.73 4.08
1541 4680 1.534163 GGAGACCGTAAAACCTGCAAC 59.466 52.381 0.00 0.00 0.00 4.17
1542 4681 2.215196 GAGACCGTAAAACCTGCAACA 58.785 47.619 0.00 0.00 0.00 3.33
1563 4702 7.746475 GCAACATTTGTGAGTTTAGATGTAGAC 59.254 37.037 0.00 0.00 0.00 2.59
1565 4704 7.680730 ACATTTGTGAGTTTAGATGTAGACCT 58.319 34.615 0.00 0.00 0.00 3.85
1566 4705 7.604164 ACATTTGTGAGTTTAGATGTAGACCTG 59.396 37.037 0.00 0.00 0.00 4.00
1567 4706 5.073311 TGTGAGTTTAGATGTAGACCTGC 57.927 43.478 0.00 0.00 0.00 4.85
1568 4707 4.526650 TGTGAGTTTAGATGTAGACCTGCA 59.473 41.667 0.00 0.00 0.00 4.41
1569 4708 5.105752 GTGAGTTTAGATGTAGACCTGCAG 58.894 45.833 6.78 6.78 0.00 4.41
1572 4719 6.436218 TGAGTTTAGATGTAGACCTGCAGTTA 59.564 38.462 13.81 0.00 0.00 2.24
1743 4897 4.573900 CAAGTACAGGGGATATCATCAGC 58.426 47.826 4.83 0.00 0.00 4.26
1898 5052 6.096705 CCAATGATTCTTTGGTTGCTATGGTA 59.903 38.462 18.66 0.00 39.05 3.25
2129 5283 5.801350 TGCCTTAATTTTCGAGATCACAG 57.199 39.130 0.00 0.00 0.00 3.66
2145 5299 5.924254 AGATCACAGCAACATCAACATTTTG 59.076 36.000 0.00 0.00 0.00 2.44
2362 5548 6.251549 GTTTACGAGATTTCCAGATCAAAGC 58.748 40.000 0.00 0.00 0.00 3.51
2378 5564 9.912634 CAGATCAAAGCAATAGGAAAAGTAAAA 57.087 29.630 0.00 0.00 0.00 1.52
2452 5638 7.288621 TCTCACATAATGCTAAGAATCCTCAGA 59.711 37.037 0.00 0.00 0.00 3.27
2510 5696 6.903534 TCTTAGTTCCTCCAGTCCTATGAAAT 59.096 38.462 0.00 0.00 0.00 2.17
2522 5708 7.177921 CCAGTCCTATGAAATGAATGCCATATT 59.822 37.037 0.00 0.00 34.45 1.28
2523 5709 8.242053 CAGTCCTATGAAATGAATGCCATATTC 58.758 37.037 0.00 0.00 34.45 1.75
2814 6004 6.323739 TCTTTTGCTGTTCCTTTTCCTTACAT 59.676 34.615 0.00 0.00 0.00 2.29
2816 6006 7.589958 TTTGCTGTTCCTTTTCCTTACATTA 57.410 32.000 0.00 0.00 0.00 1.90
2978 6373 7.064728 GCTCTAATTTGACCTTACCTACTGTTG 59.935 40.741 0.00 0.00 0.00 3.33
2979 6374 7.970102 TCTAATTTGACCTTACCTACTGTTGT 58.030 34.615 0.00 0.00 0.00 3.32
2995 6390 7.387948 CCTACTGTTGTAAAGCTAGTGTTCAAT 59.612 37.037 0.00 0.00 0.00 2.57
3004 6399 6.492007 AAGCTAGTGTTCAATGTTCATCTG 57.508 37.500 0.00 0.00 0.00 2.90
3021 6416 7.879677 TGTTCATCTGTACTTGACTTCATTCAT 59.120 33.333 0.00 0.00 0.00 2.57
3038 6434 7.707624 TCATTCATTAGGCACTCTGAAAAAT 57.292 32.000 0.00 0.00 41.40 1.82
3039 6435 8.806429 TCATTCATTAGGCACTCTGAAAAATA 57.194 30.769 0.00 0.00 41.40 1.40
3040 6436 9.241919 TCATTCATTAGGCACTCTGAAAAATAA 57.758 29.630 0.00 0.00 41.40 1.40
3081 6477 3.023119 ACTGTTGAATGAACTGTTGCCA 58.977 40.909 0.00 0.00 42.36 4.92
3094 6490 1.539388 TGTTGCCAAATACCTTGCTCG 59.461 47.619 0.00 0.00 33.27 5.03
3124 6525 9.559732 TTGCTATTGTGCTGTGTTCTATATAAT 57.440 29.630 0.00 0.00 0.00 1.28
3328 6729 5.048713 GGTATGCCATGCCTTGTAAATAGTC 60.049 44.000 4.35 0.00 34.09 2.59
3356 6757 8.910944 TGATACCTGAGTTTACCTTCTATACAC 58.089 37.037 0.00 0.00 0.00 2.90
3381 6782 9.248291 ACAGTAAAGTTGCAGTTAATTCAAATG 57.752 29.630 0.00 0.00 35.31 2.32
3400 6801 8.322906 TCAAATGGTGTCTGATAGTTTAGTTG 57.677 34.615 0.00 0.00 0.00 3.16
3533 6934 5.053145 GCTCATGATCCTCTTCGTTATGTT 58.947 41.667 0.00 0.00 0.00 2.71
3554 6955 1.303799 GCGATATGCTGGGATGGCTG 61.304 60.000 0.00 0.00 41.73 4.85
3650 7051 7.671495 AAATTCCCTTTCAAATAACATGCAC 57.329 32.000 0.00 0.00 0.00 4.57
3684 7085 9.880064 CATCATTCATCTGCAACTTAAAGATAG 57.120 33.333 0.00 0.00 0.00 2.08
3700 7101 9.103861 CTTAAAGATAGTCCTTTAGCCTTTCTG 57.896 37.037 0.00 0.00 39.10 3.02
3710 7111 4.706842 TTAGCCTTTCTGAACTTCTGGT 57.293 40.909 0.00 0.00 0.00 4.00
3801 7202 1.204704 TGACAGTGGTCCAGCTAATCG 59.795 52.381 0.00 0.00 43.65 3.34
4011 7412 4.837972 AGTCTGAAATTCTAGTTCTGGCC 58.162 43.478 0.00 0.00 31.15 5.36
4217 7618 2.359967 GGTTGACCTCTCTCCCCCG 61.360 68.421 0.00 0.00 0.00 5.73
4355 7756 6.385443 ACTGGATCCTATAATTCAGGTGAGA 58.615 40.000 14.23 0.00 36.69 3.27
4368 7769 2.353889 CAGGTGAGATTTCTGCATTCGG 59.646 50.000 0.00 0.00 0.00 4.30
4620 8022 8.539544 TCTGTATTCACCATCAAGTTATCTTCA 58.460 33.333 0.00 0.00 0.00 3.02
4698 8113 6.383415 TGTGTTTTAGTGTCACTTCCAAAAC 58.617 36.000 23.73 23.73 35.94 2.43
4743 8158 1.632920 TGGTGCTGTTCCATGTGGATA 59.367 47.619 1.98 0.00 44.98 2.59
4744 8159 2.241941 TGGTGCTGTTCCATGTGGATAT 59.758 45.455 1.98 0.00 44.98 1.63
4798 8213 5.163447 ACGCTAGACTGCACCTAATATGAAA 60.163 40.000 0.00 0.00 0.00 2.69
4820 8235 8.663025 TGAAATAACAAGTGTGTACGTTTTACA 58.337 29.630 0.00 0.00 36.80 2.41
4842 8257 4.327898 CACATTTTGCATTGCATCAGTACC 59.672 41.667 12.95 0.00 38.76 3.34
4916 8414 1.069204 AGATGACATGCGCTATCGGTT 59.931 47.619 9.73 0.00 35.95 4.44
5257 8755 6.544038 AGCATAATTCTTTTTGTTTGCCAC 57.456 33.333 0.00 0.00 0.00 5.01
5316 8814 3.626930 TGTGGAGCAACCTTTGTACTTT 58.373 40.909 0.00 0.00 39.86 2.66
5346 8844 7.656137 TCTGGTCATGAACTGAACTAGTAAAAC 59.344 37.037 17.09 0.00 42.49 2.43
5351 8849 8.421784 TCATGAACTGAACTAGTAAAACAGACT 58.578 33.333 18.97 10.09 39.18 3.24
5389 8888 1.526887 CCAGTCACCACCACACACT 59.473 57.895 0.00 0.00 0.00 3.55
5399 8898 4.927425 CACCACCACACACTATACAGTTAC 59.073 45.833 0.00 0.00 30.46 2.50
5562 9061 7.729116 AGATCAAACACTTCCAATCATTTTGT 58.271 30.769 0.00 0.00 0.00 2.83
5576 9083 7.201812 CCAATCATTTTGTGGCTAGCACTATTA 60.202 37.037 18.24 0.00 0.00 0.98
5644 9151 7.440556 CCTACATATACTGATAGGCATGCAATC 59.559 40.741 21.36 20.51 0.00 2.67
5662 9200 4.812626 GCAATCCCAATTTGCATTCCTTAG 59.187 41.667 3.68 0.00 46.78 2.18
5670 9208 2.596904 TGCATTCCTTAGTACTCGCC 57.403 50.000 0.00 0.00 0.00 5.54
5676 9214 5.509163 GCATTCCTTAGTACTCGCCTTATGA 60.509 44.000 0.00 0.00 0.00 2.15
5864 9405 1.335496 CTGGGTAGACTAGCTCGCTTC 59.665 57.143 11.30 0.00 0.00 3.86
5912 9453 8.986477 ACATTTGCTTACATCCAAGTAATTTC 57.014 30.769 0.00 0.00 33.82 2.17
5913 9454 8.584157 ACATTTGCTTACATCCAAGTAATTTCA 58.416 29.630 0.00 0.00 33.82 2.69
5914 9455 9.079833 CATTTGCTTACATCCAAGTAATTTCAG 57.920 33.333 0.00 0.00 33.82 3.02
5915 9456 7.759489 TTGCTTACATCCAAGTAATTTCAGT 57.241 32.000 0.00 0.00 33.82 3.41
5916 9457 8.856153 TTGCTTACATCCAAGTAATTTCAGTA 57.144 30.769 0.00 0.00 33.82 2.74
5917 9458 8.263940 TGCTTACATCCAAGTAATTTCAGTAC 57.736 34.615 0.00 0.00 33.82 2.73
6009 9550 4.513318 GCTTATCAGCTATTGAGGAACCAC 59.487 45.833 0.00 0.00 43.51 4.16
6044 9687 5.064834 GGAGGTTGCTACAAGCTATGTTAAC 59.935 44.000 11.63 0.00 42.97 2.01
6052 9695 6.148811 GCTACAAGCTATGTTAACAACCTTCA 59.851 38.462 13.23 5.10 43.63 3.02
6144 9787 5.239525 GGATTGTCAAGTAAGATGCCATACC 59.760 44.000 0.00 0.00 0.00 2.73
6173 9816 3.072476 AGCTCCACTGACGGCAAT 58.928 55.556 0.00 0.00 0.00 3.56
6176 9819 1.639298 GCTCCACTGACGGCAATGAC 61.639 60.000 0.00 0.00 0.00 3.06
6230 9873 2.942804 TCACCACAAATGCTTCTGGAA 58.057 42.857 0.00 0.00 0.00 3.53
6434 10077 1.577328 CGTTGGTCAAGCATTCGCCT 61.577 55.000 0.00 0.00 39.83 5.52
6545 10188 7.658261 TCACTGTGATGTATATTACTACCTGC 58.342 38.462 6.36 0.00 0.00 4.85
6546 10189 7.505923 TCACTGTGATGTATATTACTACCTGCT 59.494 37.037 6.36 0.00 0.00 4.24
6569 10212 6.309737 GCTAAATCTGAGGTTGCAATTTCTTG 59.690 38.462 0.59 2.09 35.36 3.02
6587 10234 7.730364 TTTCTTGAGAAATACTGAAGTGGTC 57.270 36.000 2.16 0.00 40.00 4.02
6674 10326 3.628942 ACCACATGAATCATTGTCGGATG 59.371 43.478 0.00 0.00 0.00 3.51
6677 10329 5.268544 CACATGAATCATTGTCGGATGAAC 58.731 41.667 0.00 1.73 39.33 3.18
6678 10330 4.943093 ACATGAATCATTGTCGGATGAACA 59.057 37.500 0.00 5.93 39.33 3.18
6682 10334 7.250445 TGAATCATTGTCGGATGAACAATAG 57.750 36.000 1.52 0.00 39.33 1.73
6683 10335 6.823182 TGAATCATTGTCGGATGAACAATAGT 59.177 34.615 1.52 0.00 39.33 2.12
6684 10336 6.609237 ATCATTGTCGGATGAACAATAGTG 57.391 37.500 1.52 0.00 39.33 2.74
6685 10337 5.487433 TCATTGTCGGATGAACAATAGTGT 58.513 37.500 1.52 0.00 40.75 3.55
6686 10338 5.580691 TCATTGTCGGATGAACAATAGTGTC 59.419 40.000 0.00 0.00 36.80 3.67
6708 10373 3.551259 GAAGCATTCCGGTGGAAGA 57.449 52.632 0.00 0.00 45.48 2.87
6709 10374 2.044123 GAAGCATTCCGGTGGAAGAT 57.956 50.000 0.00 0.00 45.48 2.40
6710 10375 1.672881 GAAGCATTCCGGTGGAAGATG 59.327 52.381 0.00 0.13 45.48 2.90
6712 10377 1.281867 AGCATTCCGGTGGAAGATGAA 59.718 47.619 0.00 0.00 45.48 2.57
6735 10416 7.890127 TGAATGAAACCAGATTCCAGTATTTCT 59.110 33.333 0.00 0.00 0.00 2.52
7040 10729 2.918571 GCTGTAGCTGTTGACTGCA 58.081 52.632 14.13 0.00 42.33 4.41
7087 10776 1.515521 CGGTGTGGAAAGTGGAAGCC 61.516 60.000 0.00 0.00 0.00 4.35
7132 10821 4.578928 CCGTTTCTTGGGGGATAACTAATG 59.421 45.833 0.00 0.00 0.00 1.90
7211 10908 6.475402 CAGTGTACATTTGTTTGTTTTCCTCC 59.525 38.462 0.00 0.00 0.00 4.30
7225 10922 7.107639 TGTTTTCCTCCTACTTTTCTTTTGG 57.892 36.000 0.00 0.00 0.00 3.28
7346 11064 0.179084 TATGGAGTAGCGTGGCTTGC 60.179 55.000 0.00 0.00 40.44 4.01
7380 11098 2.688507 ACCTCGTTGAATACTGCACAG 58.311 47.619 0.00 0.00 0.00 3.66
7426 11144 2.824341 ACCGTAGAGTAGGTTGACCTTG 59.176 50.000 8.18 0.00 46.09 3.61
7437 11155 9.315525 GAGTAGGTTGACCTTGATTAATTAGTC 57.684 37.037 8.18 1.17 46.09 2.59
7447 11165 6.415206 TTGATTAATTAGTCCCCCTACGAG 57.585 41.667 5.61 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 3.598715 TCGAACACCACCGCGTCT 61.599 61.111 4.92 0.00 0.00 4.18
242 243 2.969238 CCGCCGTCATCATCAGCC 60.969 66.667 0.00 0.00 0.00 4.85
264 265 1.452833 GGACAGCTCCTTGCCCATC 60.453 63.158 0.00 0.00 44.23 3.51
321 322 0.472543 TCCCTCTCCGGCATGATCAT 60.473 55.000 1.18 1.18 0.00 2.45
379 387 0.947180 GCATGGCCACACAAAGCAAG 60.947 55.000 8.16 0.00 0.00 4.01
408 416 5.425630 ACTATTCCAGTCGACCAAATAACC 58.574 41.667 13.01 0.00 28.33 2.85
437 445 2.799126 TGGCCATCACGGAGTAAAAT 57.201 45.000 0.00 0.00 41.61 1.82
476 484 2.545526 CGACAATGGGCATCAGTATCAC 59.454 50.000 0.00 0.00 0.00 3.06
479 487 2.260844 CCGACAATGGGCATCAGTAT 57.739 50.000 0.00 0.00 0.00 2.12
488 500 0.808755 GGTTTACAGCCGACAATGGG 59.191 55.000 0.00 0.00 0.00 4.00
615 1027 9.243637 GCTAGTTGTAGTATCAGAATTTCTCAG 57.756 37.037 0.00 0.00 0.00 3.35
695 1937 2.232452 CCTACCACTGTCACTGGAAGAG 59.768 54.545 5.60 0.95 37.43 2.85
718 2002 7.323656 CACAATTCTCGGTTCACACTTATTTTC 59.676 37.037 0.00 0.00 0.00 2.29
721 2005 5.181245 CCACAATTCTCGGTTCACACTTATT 59.819 40.000 0.00 0.00 0.00 1.40
722 2006 4.695455 CCACAATTCTCGGTTCACACTTAT 59.305 41.667 0.00 0.00 0.00 1.73
723 2007 4.062293 CCACAATTCTCGGTTCACACTTA 58.938 43.478 0.00 0.00 0.00 2.24
724 2008 2.878406 CCACAATTCTCGGTTCACACTT 59.122 45.455 0.00 0.00 0.00 3.16
725 2009 2.494059 CCACAATTCTCGGTTCACACT 58.506 47.619 0.00 0.00 0.00 3.55
729 2013 0.608035 GGGCCACAATTCTCGGTTCA 60.608 55.000 4.39 0.00 0.00 3.18
795 2079 1.977854 TGAAGGCAGGCTCACTTAGAA 59.022 47.619 0.00 0.00 0.00 2.10
814 2098 1.676006 GGTCTGTCAGTGTTGGGTTTG 59.324 52.381 0.00 0.00 0.00 2.93
815 2099 1.409661 GGGTCTGTCAGTGTTGGGTTT 60.410 52.381 0.00 0.00 0.00 3.27
885 4022 1.301677 CTTCGGCTGAGGAGTTTGGC 61.302 60.000 0.00 0.00 0.00 4.52
934 4071 2.451132 GAGTTCGCGATCTCAATTCGA 58.549 47.619 32.13 4.09 38.88 3.71
1209 4346 3.226429 AAGAGCGCGCACCTTCTGA 62.226 57.895 35.10 0.00 0.00 3.27
1277 4416 4.222124 AGGAAAACGAGCAATCAGGTAT 57.778 40.909 0.00 0.00 0.00 2.73
1279 4418 2.568623 AGGAAAACGAGCAATCAGGT 57.431 45.000 0.00 0.00 0.00 4.00
1300 4439 1.060937 GCCTGCACGCGAACAATAG 59.939 57.895 15.93 1.73 0.00 1.73
1521 4660 1.534163 GTTGCAGGTTTTACGGTCTCC 59.466 52.381 0.00 0.00 0.00 3.71
1522 4661 2.215196 TGTTGCAGGTTTTACGGTCTC 58.785 47.619 0.00 0.00 0.00 3.36
1523 4662 2.335316 TGTTGCAGGTTTTACGGTCT 57.665 45.000 0.00 0.00 0.00 3.85
1524 4663 3.636282 AATGTTGCAGGTTTTACGGTC 57.364 42.857 0.00 0.00 0.00 4.79
1525 4664 3.131400 ACAAATGTTGCAGGTTTTACGGT 59.869 39.130 0.00 0.00 0.00 4.83
1526 4665 3.489047 CACAAATGTTGCAGGTTTTACGG 59.511 43.478 0.00 0.00 0.00 4.02
1527 4666 4.355437 TCACAAATGTTGCAGGTTTTACG 58.645 39.130 0.00 0.00 0.00 3.18
1528 4667 5.348164 ACTCACAAATGTTGCAGGTTTTAC 58.652 37.500 0.00 0.00 0.00 2.01
1529 4668 5.590530 ACTCACAAATGTTGCAGGTTTTA 57.409 34.783 0.00 0.00 0.00 1.52
1530 4669 4.470334 ACTCACAAATGTTGCAGGTTTT 57.530 36.364 0.00 0.00 0.00 2.43
1531 4670 4.470334 AACTCACAAATGTTGCAGGTTT 57.530 36.364 0.00 0.00 0.00 3.27
1532 4671 4.470334 AAACTCACAAATGTTGCAGGTT 57.530 36.364 0.00 0.00 0.00 3.50
1533 4672 4.887071 TCTAAACTCACAAATGTTGCAGGT 59.113 37.500 0.00 0.00 0.00 4.00
1534 4673 5.437289 TCTAAACTCACAAATGTTGCAGG 57.563 39.130 0.00 0.00 0.00 4.85
1535 4674 6.441274 ACATCTAAACTCACAAATGTTGCAG 58.559 36.000 0.00 0.00 0.00 4.41
1536 4675 6.389830 ACATCTAAACTCACAAATGTTGCA 57.610 33.333 0.00 0.00 0.00 4.08
1537 4676 7.746475 GTCTACATCTAAACTCACAAATGTTGC 59.254 37.037 0.00 0.00 0.00 4.17
1538 4677 8.230486 GGTCTACATCTAAACTCACAAATGTTG 58.770 37.037 0.00 0.00 0.00 3.33
1539 4678 8.157476 AGGTCTACATCTAAACTCACAAATGTT 58.843 33.333 0.00 0.00 0.00 2.71
1540 4679 7.604164 CAGGTCTACATCTAAACTCACAAATGT 59.396 37.037 0.00 0.00 0.00 2.71
1541 4680 7.413438 GCAGGTCTACATCTAAACTCACAAATG 60.413 40.741 0.00 0.00 0.00 2.32
1542 4681 6.595716 GCAGGTCTACATCTAAACTCACAAAT 59.404 38.462 0.00 0.00 0.00 2.32
1563 4702 6.828785 AGTTAGGACCAATAATTAACTGCAGG 59.171 38.462 19.93 0.00 34.33 4.85
1565 4704 9.391006 CTTAGTTAGGACCAATAATTAACTGCA 57.609 33.333 10.39 0.00 35.85 4.41
1566 4705 9.609346 TCTTAGTTAGGACCAATAATTAACTGC 57.391 33.333 10.39 0.00 35.85 4.40
1572 4719 9.408648 CCAATGTCTTAGTTAGGACCAATAATT 57.591 33.333 0.00 0.00 31.98 1.40
1743 4897 0.307760 GTTGCAACCTCTCCGTTGTG 59.692 55.000 19.15 0.00 44.10 3.33
1898 5052 3.956199 CCACTAAATGGGCAAGACATCAT 59.044 43.478 0.00 0.00 45.95 2.45
2120 5274 4.959596 ATGTTGATGTTGCTGTGATCTC 57.040 40.909 0.00 0.00 0.00 2.75
2129 5283 4.318974 GGCAAGACAAAATGTTGATGTTGC 60.319 41.667 18.25 18.25 40.35 4.17
2145 5299 1.620822 ATTGGGTTGACTGGCAAGAC 58.379 50.000 0.00 0.00 37.12 3.01
2254 5440 7.989416 ACTCCATACTTCCGAAAATACAAAA 57.011 32.000 0.00 0.00 0.00 2.44
2378 5564 1.002069 TGGACAGGGCATCCAAATCT 58.998 50.000 2.19 0.00 43.43 2.40
2383 5569 2.300967 GGAGTGGACAGGGCATCCA 61.301 63.158 0.61 0.61 44.20 3.41
2452 5638 6.041979 GGATTGTGTCCATATTGGCCTAATTT 59.958 38.462 3.32 0.00 46.96 1.82
2499 5685 8.114331 TGAATATGGCATTCATTTCATAGGAC 57.886 34.615 4.78 0.00 37.30 3.85
2582 5769 2.463752 TGGTGGAGTGTAGGGTCATAC 58.536 52.381 0.00 0.00 0.00 2.39
2680 5867 5.450412 CCAAACCAGCACGCTGAATAAATAT 60.450 40.000 20.42 0.00 46.30 1.28
2836 6026 8.887717 GTGAGTGGAAATATATCTCCAATATGC 58.112 37.037 9.43 0.00 43.32 3.14
2857 6048 1.609208 AGCAATCAAAAGCGGTGAGT 58.391 45.000 0.00 0.00 35.48 3.41
2939 6334 7.653311 GGTCAAATTAGAGCACAAAACAAGAAT 59.347 33.333 0.00 0.00 36.11 2.40
2950 6345 6.535508 CAGTAGGTAAGGTCAAATTAGAGCAC 59.464 42.308 0.00 0.00 38.44 4.40
2978 6373 7.959651 CAGATGAACATTGAACACTAGCTTTAC 59.040 37.037 0.00 0.00 0.00 2.01
2979 6374 7.661437 ACAGATGAACATTGAACACTAGCTTTA 59.339 33.333 0.00 0.00 0.00 1.85
2995 6390 7.216494 TGAATGAAGTCAAGTACAGATGAACA 58.784 34.615 0.00 0.00 0.00 3.18
3004 6399 6.595716 AGTGCCTAATGAATGAAGTCAAGTAC 59.404 38.462 0.00 0.00 0.00 2.73
3081 6477 6.699575 ATAGCAAATTCGAGCAAGGTATTT 57.300 33.333 0.00 0.00 0.00 1.40
3094 6490 5.464168 AGAACACAGCACAATAGCAAATTC 58.536 37.500 0.00 0.00 36.85 2.17
3137 6538 8.613482 TGAATTACGACACTTCAACATAAAACA 58.387 29.630 0.00 0.00 0.00 2.83
3138 6539 8.996988 TGAATTACGACACTTCAACATAAAAC 57.003 30.769 0.00 0.00 0.00 2.43
3148 6549 6.801862 CAGGGAAATTTGAATTACGACACTTC 59.198 38.462 0.00 0.00 0.00 3.01
3328 6729 9.915629 GTATAGAAGGTAAACTCAGGTATCATG 57.084 37.037 0.00 0.00 0.00 3.07
3356 6757 8.702438 CCATTTGAATTAACTGCAACTTTACTG 58.298 33.333 0.00 0.00 0.00 2.74
3381 6782 5.638234 GTGGACAACTAAACTATCAGACACC 59.362 44.000 0.00 0.00 0.00 4.16
3400 6801 1.064758 TGGCAACCTATGGATGTGGAC 60.065 52.381 0.00 0.00 0.00 4.02
3452 6853 5.594725 TCCACCTCTAGTAAGAGCACTTATG 59.405 44.000 6.89 0.02 46.84 1.90
3494 6895 2.019249 TGAGCATGCACTTCTATTGGC 58.981 47.619 21.98 0.00 0.00 4.52
3533 6934 1.376086 CCATCCCAGCATATCGCCA 59.624 57.895 0.00 0.00 44.04 5.69
3554 6955 2.424956 GACCAAGGAAATCACCTGATGC 59.575 50.000 0.00 0.00 40.49 3.91
3629 7030 5.069648 TGTGTGCATGTTATTTGAAAGGGAA 59.930 36.000 0.00 0.00 0.00 3.97
3650 7051 5.371115 TGCAGATGAATGATGCATATGTG 57.629 39.130 9.58 0.00 44.56 3.21
3675 7076 8.822805 TCAGAAAGGCTAAAGGACTATCTTTAA 58.177 33.333 0.00 0.00 38.34 1.52
3684 7085 5.180304 CAGAAGTTCAGAAAGGCTAAAGGAC 59.820 44.000 5.50 0.00 0.00 3.85
3700 7101 7.042725 GCCTTCAAACATTAAAACCAGAAGTTC 60.043 37.037 0.00 0.00 37.88 3.01
3710 7111 5.423015 TGCAAGTGCCTTCAAACATTAAAA 58.577 33.333 0.00 0.00 41.18 1.52
3801 7202 4.859798 CACCTTCTCTTACAGAATGACGAC 59.140 45.833 0.00 0.00 40.55 4.34
4217 7618 4.106925 CCCTCCCTCACTGCTGGC 62.107 72.222 0.00 0.00 0.00 4.85
4355 7756 5.488341 ACTAAGTACACCGAATGCAGAAAT 58.512 37.500 0.00 0.00 0.00 2.17
4368 7769 9.903682 TTAGACATCTGTACAAACTAAGTACAC 57.096 33.333 0.00 0.00 44.86 2.90
4446 7848 5.033589 ACAATTCAAAATTGCACCAAGGA 57.966 34.783 11.33 0.00 32.55 3.36
4620 8022 7.278868 GTGTAATACTGATAGCTTGCTTGAACT 59.721 37.037 0.00 0.00 0.00 3.01
4782 8197 8.677300 ACACTTGTTATTTCATATTAGGTGCAG 58.323 33.333 0.00 0.00 0.00 4.41
4820 8235 4.221262 AGGTACTGATGCAATGCAAAATGT 59.779 37.500 13.45 11.36 39.20 2.71
5316 8814 4.780815 AGTTCAGTTCATGACCAGAACAA 58.219 39.130 23.85 0.00 45.93 2.83
5441 8940 2.185004 TGCAGCTACAGGGAACTTTC 57.815 50.000 0.00 0.00 40.21 2.62
5562 9061 3.324846 CCCATGTCTAATAGTGCTAGCCA 59.675 47.826 13.29 0.00 0.00 4.75
5576 9083 8.109634 ACTAAATCATAAGTGTTTCCCATGTCT 58.890 33.333 0.00 0.00 0.00 3.41
5609 9116 8.412456 CCTATCAGTATATGTAGGATCAGCTTG 58.588 40.741 0.00 0.00 35.97 4.01
5610 9117 7.069331 GCCTATCAGTATATGTAGGATCAGCTT 59.931 40.741 0.00 0.00 35.97 3.74
5612 9119 6.322456 TGCCTATCAGTATATGTAGGATCAGC 59.678 42.308 0.00 0.00 35.97 4.26
5644 9151 5.220854 CGAGTACTAAGGAATGCAAATTGGG 60.221 44.000 0.00 0.00 0.00 4.12
5662 9200 2.891580 TCTGGGATCATAAGGCGAGTAC 59.108 50.000 0.00 0.00 0.00 2.73
5676 9214 9.660544 AAGCCAGTTATATTTTTATTCTGGGAT 57.339 29.630 9.76 0.00 40.58 3.85
5708 9246 0.681564 TCCACAACACCGGCTGTTTT 60.682 50.000 16.56 10.13 41.50 2.43
5864 9405 3.088194 ACAAGTTGATTTGCACAGCTG 57.912 42.857 13.48 13.48 0.00 4.24
5912 9453 5.647658 TGGCATCATGTAAGGAAAAGTACTG 59.352 40.000 0.00 0.00 0.00 2.74
5913 9454 5.815581 TGGCATCATGTAAGGAAAAGTACT 58.184 37.500 0.00 0.00 0.00 2.73
5914 9455 6.498304 CATGGCATCATGTAAGGAAAAGTAC 58.502 40.000 0.00 0.00 44.22 2.73
5915 9456 6.698008 CATGGCATCATGTAAGGAAAAGTA 57.302 37.500 0.00 0.00 44.22 2.24
5916 9457 5.587388 CATGGCATCATGTAAGGAAAAGT 57.413 39.130 0.00 0.00 44.22 2.66
6044 9687 5.869344 TGTTTCGATCATAGAGTGAAGGTTG 59.131 40.000 0.00 0.00 40.97 3.77
6052 9695 4.166523 CGTGTGTGTTTCGATCATAGAGT 58.833 43.478 0.00 0.00 0.00 3.24
6083 9726 8.869109 AGAATGCTATCAGCTTCTTTATCTACT 58.131 33.333 0.00 0.00 42.97 2.57
6144 9787 5.164954 GTCAGTGGAGCTGTAGTTCTTTAG 58.835 45.833 0.00 0.00 45.23 1.85
6173 9816 0.247460 CCAGAGGTCTTGCATCGTCA 59.753 55.000 0.00 0.00 32.37 4.35
6176 9819 1.078918 TGCCAGAGGTCTTGCATCG 60.079 57.895 1.72 0.00 39.34 3.84
6373 10016 1.077068 TTTGGATCCATCACCGCCC 60.077 57.895 17.06 0.00 0.00 6.13
6434 10077 4.887655 TCCAGTATCGTTCTTATCTGCTCA 59.112 41.667 0.00 0.00 0.00 4.26
6539 10182 3.263170 TGCAACCTCAGATTTAGCAGGTA 59.737 43.478 0.00 0.00 38.37 3.08
6540 10183 2.040278 TGCAACCTCAGATTTAGCAGGT 59.960 45.455 0.00 0.00 41.27 4.00
6541 10184 2.715046 TGCAACCTCAGATTTAGCAGG 58.285 47.619 0.00 0.00 0.00 4.85
6544 10187 5.958955 AGAAATTGCAACCTCAGATTTAGC 58.041 37.500 0.00 0.00 0.00 3.09
6545 10188 7.596494 TCAAGAAATTGCAACCTCAGATTTAG 58.404 34.615 0.00 0.00 0.00 1.85
6546 10189 7.448161 TCTCAAGAAATTGCAACCTCAGATTTA 59.552 33.333 0.00 0.00 0.00 1.40
6569 10212 4.691216 GGTGTGACCACTTCAGTATTTCTC 59.309 45.833 1.62 0.00 41.53 2.87
6620 10270 7.510549 ACAAGCAAAACTGTAATACATGAGT 57.489 32.000 0.00 0.00 0.00 3.41
6621 10271 8.801715 AAACAAGCAAAACTGTAATACATGAG 57.198 30.769 0.00 0.00 0.00 2.90
6674 10326 6.183360 GGAATGCTTCTCTGACACTATTGTTC 60.183 42.308 0.00 0.00 35.47 3.18
6677 10329 4.269603 CGGAATGCTTCTCTGACACTATTG 59.730 45.833 0.00 0.00 0.00 1.90
6678 10330 4.437239 CGGAATGCTTCTCTGACACTATT 58.563 43.478 0.00 0.00 0.00 1.73
6682 10334 1.338200 ACCGGAATGCTTCTCTGACAC 60.338 52.381 9.46 0.00 0.00 3.67
6683 10335 0.976641 ACCGGAATGCTTCTCTGACA 59.023 50.000 9.46 0.00 0.00 3.58
6684 10336 1.363744 CACCGGAATGCTTCTCTGAC 58.636 55.000 9.46 0.00 0.00 3.51
6685 10337 0.250234 CCACCGGAATGCTTCTCTGA 59.750 55.000 9.46 0.00 0.00 3.27
6686 10338 0.250234 TCCACCGGAATGCTTCTCTG 59.750 55.000 9.46 0.00 0.00 3.35
6703 10368 5.653769 TGGAATCTGGTTTCATTCATCTTCC 59.346 40.000 0.00 0.00 31.58 3.46
6704 10369 6.376581 ACTGGAATCTGGTTTCATTCATCTTC 59.623 38.462 0.00 0.00 31.58 2.87
6705 10370 6.251471 ACTGGAATCTGGTTTCATTCATCTT 58.749 36.000 0.00 0.00 31.58 2.40
6706 10371 5.824421 ACTGGAATCTGGTTTCATTCATCT 58.176 37.500 0.00 0.00 31.58 2.90
6707 10372 7.814264 ATACTGGAATCTGGTTTCATTCATC 57.186 36.000 0.00 0.00 31.58 2.92
6708 10373 8.599624 AAATACTGGAATCTGGTTTCATTCAT 57.400 30.769 0.00 0.00 31.58 2.57
6709 10374 7.890127 AGAAATACTGGAATCTGGTTTCATTCA 59.110 33.333 0.00 0.00 31.58 2.57
6710 10375 8.186821 CAGAAATACTGGAATCTGGTTTCATTC 58.813 37.037 0.00 0.00 42.39 2.67
6712 10377 7.636150 CAGAAATACTGGAATCTGGTTTCAT 57.364 36.000 0.00 0.00 42.39 2.57
6735 10416 1.493022 ACCCTACACAAGCAAGAACCA 59.507 47.619 0.00 0.00 0.00 3.67
6931 10613 2.433436 TCAGCTGCTCGTCTGTAGTAA 58.567 47.619 9.47 0.00 0.00 2.24
6939 10624 2.223203 CCATCAAAATCAGCTGCTCGTC 60.223 50.000 9.47 0.00 0.00 4.20
6980 10667 4.208047 CACGAAAAAGGAGATCAGATAGCG 59.792 45.833 0.00 0.00 0.00 4.26
6981 10668 4.025313 GCACGAAAAAGGAGATCAGATAGC 60.025 45.833 0.00 0.00 0.00 2.97
7087 10776 0.249868 TTGGATCCTGATTAGCGGCG 60.250 55.000 14.23 0.51 0.00 6.46
7132 10821 2.972713 TGGATAACCTGTCCCTGATAGC 59.027 50.000 0.00 0.00 34.76 2.97
7211 10908 7.538303 AAACATGTTGCCAAAAGAAAAGTAG 57.462 32.000 12.82 0.00 0.00 2.57
7225 10922 7.437862 TCACAAAATAAGAGGAAAACATGTTGC 59.562 33.333 12.82 7.49 0.00 4.17
7268 10986 9.305555 ACATATATCATATTTTTCAGCTGCCTT 57.694 29.630 9.47 0.00 0.00 4.35
7269 10987 8.874744 ACATATATCATATTTTTCAGCTGCCT 57.125 30.769 9.47 0.00 0.00 4.75
7346 11064 2.283298 ACGAGGTTGATGCTGCTATTG 58.717 47.619 0.00 0.00 0.00 1.90
7380 11098 0.179009 TGAGCAGCTAATGGATGGGC 60.179 55.000 0.00 0.00 0.00 5.36
7426 11144 4.282703 TGCTCGTAGGGGGACTAATTAATC 59.717 45.833 0.00 0.00 32.37 1.75
7437 11155 3.377172 CAGTTTAATTTGCTCGTAGGGGG 59.623 47.826 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.