Multiple sequence alignment - TraesCS4A01G061300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G061300 chr4A 100.000 3457 0 0 1 3457 58507417 58510873 0.000000e+00 6384.0
1 TraesCS4A01G061300 chr4A 87.302 63 7 1 1 63 682754686 682754625 1.720000e-08 71.3
2 TraesCS4A01G061300 chr7A 98.283 3204 52 3 255 3457 11051444 11048243 0.000000e+00 5609.0
3 TraesCS4A01G061300 chr7A 90.941 861 51 14 545 1387 708601859 708602710 0.000000e+00 1133.0
4 TraesCS4A01G061300 chr7A 92.063 63 4 1 1 63 3798899 3798838 1.710000e-13 87.9
5 TraesCS4A01G061300 chr6B 97.919 3219 52 5 252 3457 712151894 712155110 0.000000e+00 5559.0
6 TraesCS4A01G061300 chr6B 95.213 3217 127 12 255 3454 366596284 366593078 0.000000e+00 5062.0
7 TraesCS4A01G061300 chr1B 97.298 3220 62 3 250 3457 6396355 6399561 0.000000e+00 5441.0
8 TraesCS4A01G061300 chr1B 90.566 53 4 1 2 54 687309499 687309550 6.190000e-08 69.4
9 TraesCS4A01G061300 chr3B 94.481 3207 152 13 256 3454 465857842 465861031 0.000000e+00 4918.0
10 TraesCS4A01G061300 chr2D 94.193 3220 154 19 255 3454 46693766 46690560 0.000000e+00 4879.0
11 TraesCS4A01G061300 chr2D 87.143 70 7 2 1 69 194646903 194646971 1.030000e-10 78.7
12 TraesCS4A01G061300 chr7D 93.973 3219 160 19 255 3454 615778481 615781684 0.000000e+00 4839.0
13 TraesCS4A01G061300 chr5D 93.791 2931 148 19 255 3166 41776635 41779550 0.000000e+00 4373.0
14 TraesCS4A01G061300 chr6A 93.091 2591 157 14 773 3356 61567973 61565398 0.000000e+00 3773.0
15 TraesCS4A01G061300 chr6A 92.593 54 3 1 1 54 135243873 135243821 3.700000e-10 76.8
16 TraesCS4A01G061300 chr6D 93.222 2405 128 17 255 2639 429473821 429476210 0.000000e+00 3506.0
17 TraesCS4A01G061300 chr6D 87.302 63 7 1 1 63 110880897 110880836 1.720000e-08 71.3
18 TraesCS4A01G061300 chr4D 82.126 207 15 6 64 253 400647189 400647390 1.280000e-34 158.0
19 TraesCS4A01G061300 chr4B 92.233 103 8 0 64 166 495013859 495013961 2.780000e-31 147.0
20 TraesCS4A01G061300 chr4B 90.110 91 8 1 164 253 495014224 495014314 2.180000e-22 117.0
21 TraesCS4A01G061300 chr4B 88.889 63 6 1 1 63 69320564 69320503 3.700000e-10 76.8
22 TraesCS4A01G061300 chr1A 89.062 64 6 1 1 64 537967340 537967278 1.030000e-10 78.7
23 TraesCS4A01G061300 chr5A 85.938 64 8 1 1 64 612177505 612177443 2.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G061300 chr4A 58507417 58510873 3456 False 6384 6384 100.000 1 3457 1 chr4A.!!$F1 3456
1 TraesCS4A01G061300 chr7A 11048243 11051444 3201 True 5609 5609 98.283 255 3457 1 chr7A.!!$R2 3202
2 TraesCS4A01G061300 chr7A 708601859 708602710 851 False 1133 1133 90.941 545 1387 1 chr7A.!!$F1 842
3 TraesCS4A01G061300 chr6B 712151894 712155110 3216 False 5559 5559 97.919 252 3457 1 chr6B.!!$F1 3205
4 TraesCS4A01G061300 chr6B 366593078 366596284 3206 True 5062 5062 95.213 255 3454 1 chr6B.!!$R1 3199
5 TraesCS4A01G061300 chr1B 6396355 6399561 3206 False 5441 5441 97.298 250 3457 1 chr1B.!!$F1 3207
6 TraesCS4A01G061300 chr3B 465857842 465861031 3189 False 4918 4918 94.481 256 3454 1 chr3B.!!$F1 3198
7 TraesCS4A01G061300 chr2D 46690560 46693766 3206 True 4879 4879 94.193 255 3454 1 chr2D.!!$R1 3199
8 TraesCS4A01G061300 chr7D 615778481 615781684 3203 False 4839 4839 93.973 255 3454 1 chr7D.!!$F1 3199
9 TraesCS4A01G061300 chr5D 41776635 41779550 2915 False 4373 4373 93.791 255 3166 1 chr5D.!!$F1 2911
10 TraesCS4A01G061300 chr6A 61565398 61567973 2575 True 3773 3773 93.091 773 3356 1 chr6A.!!$R1 2583
11 TraesCS4A01G061300 chr6D 429473821 429476210 2389 False 3506 3506 93.222 255 2639 1 chr6D.!!$F1 2384

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.035317 TCAACGCTCCATGCTCACTT 59.965 50.0 0.0 0.0 40.11 3.16 F
68 69 0.035317 AACGCTCCATGCTCACTTGA 59.965 50.0 0.0 0.0 40.11 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 2023 0.610174 TCCTCAAGAGCTCGCACATT 59.390 50.000 8.37 0.0 0.00 2.71 R
2916 2971 6.549364 TGTTCAAACTCCTGGTTCATGTATTT 59.451 34.615 0.00 0.0 37.12 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.673375 CAGGTGGGCTTGGCAGCT 62.673 66.667 8.45 0.00 46.44 4.24
24 25 2.935481 AGGTGGGCTTGGCAGCTA 60.935 61.111 8.45 0.00 46.44 3.32
25 26 2.751837 GGTGGGCTTGGCAGCTAC 60.752 66.667 8.45 7.99 46.44 3.58
26 27 2.751837 GTGGGCTTGGCAGCTACC 60.752 66.667 0.00 0.00 46.44 3.18
27 28 4.047125 TGGGCTTGGCAGCTACCC 62.047 66.667 0.00 8.72 46.44 3.69
28 29 4.822628 GGGCTTGGCAGCTACCCC 62.823 72.222 0.00 0.00 46.44 4.95
29 30 4.047125 GGCTTGGCAGCTACCCCA 62.047 66.667 0.00 0.00 46.44 4.96
30 31 2.439156 GCTTGGCAGCTACCCCAG 60.439 66.667 0.00 0.00 43.51 4.45
48 49 2.743928 CTGCCCAGCCAACGAGTC 60.744 66.667 0.00 0.00 0.00 3.36
49 50 3.535629 CTGCCCAGCCAACGAGTCA 62.536 63.158 0.00 0.00 0.00 3.41
50 51 2.281484 GCCCAGCCAACGAGTCAA 60.281 61.111 0.00 0.00 0.00 3.18
51 52 2.617274 GCCCAGCCAACGAGTCAAC 61.617 63.158 0.00 0.00 0.00 3.18
52 53 2.317609 CCCAGCCAACGAGTCAACG 61.318 63.158 0.00 0.00 39.31 4.10
53 54 2.551270 CAGCCAACGAGTCAACGC 59.449 61.111 0.00 0.00 36.70 4.84
54 55 1.956170 CAGCCAACGAGTCAACGCT 60.956 57.895 0.00 0.00 36.70 5.07
55 56 1.664965 AGCCAACGAGTCAACGCTC 60.665 57.895 0.00 0.00 36.70 5.03
56 57 2.668280 GCCAACGAGTCAACGCTCC 61.668 63.158 0.00 0.00 36.70 4.70
57 58 1.300620 CCAACGAGTCAACGCTCCA 60.301 57.895 0.00 0.00 36.70 3.86
58 59 0.670546 CCAACGAGTCAACGCTCCAT 60.671 55.000 0.00 0.00 36.70 3.41
59 60 0.439985 CAACGAGTCAACGCTCCATG 59.560 55.000 0.00 0.00 36.70 3.66
60 61 1.291877 AACGAGTCAACGCTCCATGC 61.292 55.000 0.00 0.00 36.70 4.06
61 62 1.446792 CGAGTCAACGCTCCATGCT 60.447 57.895 0.00 0.00 40.11 3.79
62 63 1.416813 CGAGTCAACGCTCCATGCTC 61.417 60.000 0.00 0.00 40.11 4.26
63 64 0.390340 GAGTCAACGCTCCATGCTCA 60.390 55.000 0.00 0.00 40.11 4.26
64 65 0.671781 AGTCAACGCTCCATGCTCAC 60.672 55.000 0.00 0.00 40.11 3.51
65 66 0.671781 GTCAACGCTCCATGCTCACT 60.672 55.000 0.00 0.00 40.11 3.41
66 67 0.035317 TCAACGCTCCATGCTCACTT 59.965 50.000 0.00 0.00 40.11 3.16
67 68 0.167470 CAACGCTCCATGCTCACTTG 59.833 55.000 0.00 0.00 40.11 3.16
68 69 0.035317 AACGCTCCATGCTCACTTGA 59.965 50.000 0.00 0.00 40.11 3.02
69 70 0.251354 ACGCTCCATGCTCACTTGAT 59.749 50.000 0.00 0.00 40.11 2.57
70 71 1.339438 ACGCTCCATGCTCACTTGATT 60.339 47.619 0.00 0.00 40.11 2.57
71 72 2.093500 ACGCTCCATGCTCACTTGATTA 60.093 45.455 0.00 0.00 40.11 1.75
72 73 2.938451 CGCTCCATGCTCACTTGATTAA 59.062 45.455 0.00 0.00 40.11 1.40
73 74 3.374988 CGCTCCATGCTCACTTGATTAAA 59.625 43.478 0.00 0.00 40.11 1.52
74 75 4.036027 CGCTCCATGCTCACTTGATTAAAT 59.964 41.667 0.00 0.00 40.11 1.40
75 76 5.517904 GCTCCATGCTCACTTGATTAAATC 58.482 41.667 0.00 0.00 38.95 2.17
76 77 5.298777 GCTCCATGCTCACTTGATTAAATCT 59.701 40.000 0.00 0.00 38.95 2.40
77 78 6.513066 GCTCCATGCTCACTTGATTAAATCTC 60.513 42.308 0.00 0.00 38.95 2.75
78 79 6.417258 TCCATGCTCACTTGATTAAATCTCA 58.583 36.000 0.00 0.00 0.00 3.27
79 80 6.541278 TCCATGCTCACTTGATTAAATCTCAG 59.459 38.462 0.00 0.00 0.00 3.35
80 81 6.318144 CCATGCTCACTTGATTAAATCTCAGT 59.682 38.462 0.00 0.00 0.00 3.41
81 82 6.974932 TGCTCACTTGATTAAATCTCAGTC 57.025 37.500 0.00 0.00 0.00 3.51
82 83 6.705302 TGCTCACTTGATTAAATCTCAGTCT 58.295 36.000 0.00 0.00 0.00 3.24
83 84 7.840931 TGCTCACTTGATTAAATCTCAGTCTA 58.159 34.615 0.00 0.00 0.00 2.59
84 85 7.761704 TGCTCACTTGATTAAATCTCAGTCTAC 59.238 37.037 0.00 0.00 0.00 2.59
85 86 7.978975 GCTCACTTGATTAAATCTCAGTCTACT 59.021 37.037 0.00 0.00 0.00 2.57
86 87 9.299963 CTCACTTGATTAAATCTCAGTCTACTG 57.700 37.037 3.64 3.64 45.08 2.74
101 102 7.301068 CAGTCTACTGAATTCTAGGCTTTTG 57.699 40.000 7.05 0.00 46.59 2.44
102 103 6.314896 CAGTCTACTGAATTCTAGGCTTTTGG 59.685 42.308 7.05 0.00 46.59 3.28
103 104 5.065346 GTCTACTGAATTCTAGGCTTTTGGC 59.935 44.000 7.05 0.00 46.43 4.52
112 113 3.615709 GCTTTTGGCAAGCCCGGT 61.616 61.111 8.89 0.00 41.35 5.28
113 114 2.272447 GCTTTTGGCAAGCCCGGTA 61.272 57.895 8.89 0.00 41.35 4.02
114 115 1.604147 GCTTTTGGCAAGCCCGGTAT 61.604 55.000 8.89 0.00 41.35 2.73
115 116 1.757682 CTTTTGGCAAGCCCGGTATA 58.242 50.000 8.89 0.00 35.87 1.47
116 117 2.306847 CTTTTGGCAAGCCCGGTATAT 58.693 47.619 8.89 0.00 35.87 0.86
117 118 3.482436 CTTTTGGCAAGCCCGGTATATA 58.518 45.455 8.89 0.00 35.87 0.86
118 119 2.851263 TTGGCAAGCCCGGTATATAG 57.149 50.000 8.89 0.00 35.87 1.31
119 120 2.018355 TGGCAAGCCCGGTATATAGA 57.982 50.000 8.89 0.00 35.87 1.98
120 121 2.331166 TGGCAAGCCCGGTATATAGAA 58.669 47.619 8.89 0.00 35.87 2.10
121 122 2.301870 TGGCAAGCCCGGTATATAGAAG 59.698 50.000 8.89 0.00 35.87 2.85
122 123 2.302157 GGCAAGCCCGGTATATAGAAGT 59.698 50.000 0.00 0.00 0.00 3.01
123 124 3.512724 GGCAAGCCCGGTATATAGAAGTA 59.487 47.826 0.00 0.00 0.00 2.24
124 125 4.381718 GGCAAGCCCGGTATATAGAAGTAG 60.382 50.000 0.00 0.00 0.00 2.57
125 126 4.461781 GCAAGCCCGGTATATAGAAGTAGA 59.538 45.833 0.00 0.00 0.00 2.59
126 127 5.393243 GCAAGCCCGGTATATAGAAGTAGAG 60.393 48.000 0.00 0.00 0.00 2.43
127 128 4.271661 AGCCCGGTATATAGAAGTAGAGC 58.728 47.826 0.00 0.00 0.00 4.09
128 129 3.065095 GCCCGGTATATAGAAGTAGAGCG 59.935 52.174 0.00 0.00 36.77 5.03
129 130 4.511527 CCCGGTATATAGAAGTAGAGCGA 58.488 47.826 0.00 0.00 38.59 4.93
130 131 4.940046 CCCGGTATATAGAAGTAGAGCGAA 59.060 45.833 0.00 0.00 38.59 4.70
131 132 5.413833 CCCGGTATATAGAAGTAGAGCGAAA 59.586 44.000 0.00 0.00 38.59 3.46
132 133 6.072286 CCCGGTATATAGAAGTAGAGCGAAAA 60.072 42.308 0.00 0.00 38.59 2.29
133 134 7.022384 CCGGTATATAGAAGTAGAGCGAAAAG 58.978 42.308 0.00 0.00 38.59 2.27
134 135 7.094890 CCGGTATATAGAAGTAGAGCGAAAAGA 60.095 40.741 0.00 0.00 38.59 2.52
135 136 8.452534 CGGTATATAGAAGTAGAGCGAAAAGAT 58.547 37.037 0.00 0.00 38.59 2.40
140 141 8.859517 ATAGAAGTAGAGCGAAAAGATAACAC 57.140 34.615 0.00 0.00 0.00 3.32
141 142 6.688578 AGAAGTAGAGCGAAAAGATAACACA 58.311 36.000 0.00 0.00 0.00 3.72
142 143 7.152645 AGAAGTAGAGCGAAAAGATAACACAA 58.847 34.615 0.00 0.00 0.00 3.33
143 144 7.656137 AGAAGTAGAGCGAAAAGATAACACAAA 59.344 33.333 0.00 0.00 0.00 2.83
144 145 7.352719 AGTAGAGCGAAAAGATAACACAAAG 57.647 36.000 0.00 0.00 0.00 2.77
145 146 5.613358 AGAGCGAAAAGATAACACAAAGG 57.387 39.130 0.00 0.00 0.00 3.11
146 147 5.305585 AGAGCGAAAAGATAACACAAAGGA 58.694 37.500 0.00 0.00 0.00 3.36
147 148 5.179555 AGAGCGAAAAGATAACACAAAGGAC 59.820 40.000 0.00 0.00 0.00 3.85
148 149 5.063880 AGCGAAAAGATAACACAAAGGACT 58.936 37.500 0.00 0.00 0.00 3.85
149 150 5.049405 AGCGAAAAGATAACACAAAGGACTG 60.049 40.000 0.00 0.00 0.00 3.51
150 151 5.277828 GCGAAAAGATAACACAAAGGACTGT 60.278 40.000 0.00 0.00 0.00 3.55
151 152 6.073440 GCGAAAAGATAACACAAAGGACTGTA 60.073 38.462 0.00 0.00 0.00 2.74
152 153 7.510630 CGAAAAGATAACACAAAGGACTGTAG 58.489 38.462 0.00 0.00 0.00 2.74
153 154 6.803154 AAAGATAACACAAAGGACTGTAGC 57.197 37.500 0.00 0.00 0.00 3.58
154 155 4.495422 AGATAACACAAAGGACTGTAGCG 58.505 43.478 0.00 0.00 0.00 4.26
155 156 2.614829 AACACAAAGGACTGTAGCGT 57.385 45.000 0.00 0.00 0.00 5.07
156 157 2.150397 ACACAAAGGACTGTAGCGTC 57.850 50.000 0.00 0.00 0.00 5.19
157 158 1.687123 ACACAAAGGACTGTAGCGTCT 59.313 47.619 0.00 0.00 34.38 4.18
158 159 2.288273 ACACAAAGGACTGTAGCGTCTC 60.288 50.000 0.00 0.00 34.38 3.36
159 160 1.961394 ACAAAGGACTGTAGCGTCTCA 59.039 47.619 0.00 0.00 34.38 3.27
160 161 2.563179 ACAAAGGACTGTAGCGTCTCAT 59.437 45.455 0.00 0.00 34.38 2.90
161 162 2.926200 CAAAGGACTGTAGCGTCTCATG 59.074 50.000 0.00 0.00 34.38 3.07
162 163 0.457851 AGGACTGTAGCGTCTCATGC 59.542 55.000 0.00 0.00 34.38 4.06
163 164 0.457851 GGACTGTAGCGTCTCATGCT 59.542 55.000 0.00 0.00 43.91 3.79
164 165 1.676529 GGACTGTAGCGTCTCATGCTA 59.323 52.381 0.00 0.00 41.42 3.49
165 166 2.287308 GGACTGTAGCGTCTCATGCTAG 60.287 54.545 0.00 0.00 42.78 3.42
166 167 2.356382 GACTGTAGCGTCTCATGCTAGT 59.644 50.000 0.00 0.00 42.78 2.57
167 168 3.542648 ACTGTAGCGTCTCATGCTAGTA 58.457 45.455 0.00 0.00 42.78 1.82
168 169 4.138290 ACTGTAGCGTCTCATGCTAGTAT 58.862 43.478 0.00 0.00 42.78 2.12
169 170 4.580995 ACTGTAGCGTCTCATGCTAGTATT 59.419 41.667 0.00 0.00 42.78 1.89
170 171 5.763698 ACTGTAGCGTCTCATGCTAGTATTA 59.236 40.000 0.00 0.00 42.78 0.98
171 172 6.431543 ACTGTAGCGTCTCATGCTAGTATTAT 59.568 38.462 0.00 0.00 42.78 1.28
172 173 6.843208 TGTAGCGTCTCATGCTAGTATTATC 58.157 40.000 0.00 0.00 42.78 1.75
173 174 5.317733 AGCGTCTCATGCTAGTATTATCC 57.682 43.478 0.00 0.00 38.98 2.59
174 175 4.767409 AGCGTCTCATGCTAGTATTATCCA 59.233 41.667 0.00 0.00 38.98 3.41
175 176 5.420421 AGCGTCTCATGCTAGTATTATCCAT 59.580 40.000 0.00 0.00 38.98 3.41
176 177 5.746245 GCGTCTCATGCTAGTATTATCCATC 59.254 44.000 0.00 0.00 0.00 3.51
177 178 5.968261 CGTCTCATGCTAGTATTATCCATCG 59.032 44.000 0.00 0.00 0.00 3.84
178 179 5.746245 GTCTCATGCTAGTATTATCCATCGC 59.254 44.000 0.00 0.00 0.00 4.58
179 180 5.418840 TCTCATGCTAGTATTATCCATCGCA 59.581 40.000 0.00 0.00 0.00 5.10
180 181 5.654497 TCATGCTAGTATTATCCATCGCAG 58.346 41.667 0.00 0.00 0.00 5.18
181 182 3.849911 TGCTAGTATTATCCATCGCAGC 58.150 45.455 0.00 0.00 0.00 5.25
182 183 3.511540 TGCTAGTATTATCCATCGCAGCT 59.488 43.478 0.00 0.00 0.00 4.24
183 184 3.862267 GCTAGTATTATCCATCGCAGCTG 59.138 47.826 10.11 10.11 0.00 4.24
184 185 3.325293 AGTATTATCCATCGCAGCTGG 57.675 47.619 17.12 5.82 34.93 4.85
185 186 2.899900 AGTATTATCCATCGCAGCTGGA 59.100 45.455 17.12 11.54 46.45 3.86
186 187 2.936919 ATTATCCATCGCAGCTGGAA 57.063 45.000 17.12 0.00 45.57 3.53
187 188 2.708216 TTATCCATCGCAGCTGGAAA 57.292 45.000 17.12 0.00 45.57 3.13
188 189 1.953559 TATCCATCGCAGCTGGAAAC 58.046 50.000 17.12 0.00 45.57 2.78
189 190 0.254178 ATCCATCGCAGCTGGAAACT 59.746 50.000 17.12 0.00 45.57 2.66
190 191 0.674581 TCCATCGCAGCTGGAAACTG 60.675 55.000 17.12 6.58 39.83 3.16
201 202 2.874849 CTGGAAACTGCAACAAAACGT 58.125 42.857 0.00 0.00 0.00 3.99
202 203 2.851824 CTGGAAACTGCAACAAAACGTC 59.148 45.455 0.00 0.00 0.00 4.34
203 204 2.229062 TGGAAACTGCAACAAAACGTCA 59.771 40.909 0.00 0.00 0.00 4.35
204 205 3.119316 TGGAAACTGCAACAAAACGTCAT 60.119 39.130 0.00 0.00 0.00 3.06
205 206 3.485743 GGAAACTGCAACAAAACGTCATC 59.514 43.478 0.00 0.00 0.00 2.92
206 207 4.351192 GAAACTGCAACAAAACGTCATCT 58.649 39.130 0.00 0.00 0.00 2.90
207 208 4.370364 AACTGCAACAAAACGTCATCTT 57.630 36.364 0.00 0.00 0.00 2.40
208 209 4.370364 ACTGCAACAAAACGTCATCTTT 57.630 36.364 0.00 0.00 0.00 2.52
209 210 4.104776 ACTGCAACAAAACGTCATCTTTG 58.895 39.130 8.52 8.52 38.29 2.77
210 211 3.443037 TGCAACAAAACGTCATCTTTGG 58.557 40.909 13.40 0.53 36.94 3.28
211 212 3.119316 TGCAACAAAACGTCATCTTTGGT 60.119 39.130 13.40 5.44 36.94 3.67
212 213 3.485743 GCAACAAAACGTCATCTTTGGTC 59.514 43.478 13.40 0.69 36.94 4.02
213 214 4.733523 GCAACAAAACGTCATCTTTGGTCT 60.734 41.667 13.40 0.00 36.94 3.85
214 215 5.504994 GCAACAAAACGTCATCTTTGGTCTA 60.505 40.000 13.40 0.00 36.94 2.59
215 216 5.668558 ACAAAACGTCATCTTTGGTCTAC 57.331 39.130 13.40 0.00 36.94 2.59
216 217 5.120399 ACAAAACGTCATCTTTGGTCTACA 58.880 37.500 13.40 0.00 36.94 2.74
217 218 5.763204 ACAAAACGTCATCTTTGGTCTACAT 59.237 36.000 13.40 0.00 36.94 2.29
218 219 6.932400 ACAAAACGTCATCTTTGGTCTACATA 59.068 34.615 13.40 0.00 36.94 2.29
219 220 7.117812 ACAAAACGTCATCTTTGGTCTACATAG 59.882 37.037 13.40 0.00 36.94 2.23
220 221 5.916661 ACGTCATCTTTGGTCTACATAGT 57.083 39.130 0.00 0.00 31.09 2.12
221 222 7.400599 AACGTCATCTTTGGTCTACATAGTA 57.599 36.000 0.00 0.00 31.09 1.82
222 223 7.400599 ACGTCATCTTTGGTCTACATAGTAA 57.599 36.000 0.00 0.00 31.09 2.24
223 224 8.008513 ACGTCATCTTTGGTCTACATAGTAAT 57.991 34.615 0.00 0.00 31.09 1.89
224 225 7.921214 ACGTCATCTTTGGTCTACATAGTAATG 59.079 37.037 0.00 0.00 39.17 1.90
225 226 7.096023 CGTCATCTTTGGTCTACATAGTAATGC 60.096 40.741 0.00 0.00 36.50 3.56
226 227 7.710907 GTCATCTTTGGTCTACATAGTAATGCA 59.289 37.037 0.00 0.00 36.50 3.96
227 228 8.264347 TCATCTTTGGTCTACATAGTAATGCAA 58.736 33.333 0.00 0.00 36.50 4.08
228 229 8.892723 CATCTTTGGTCTACATAGTAATGCAAA 58.107 33.333 0.00 0.00 36.50 3.68
229 230 8.492673 TCTTTGGTCTACATAGTAATGCAAAG 57.507 34.615 0.00 0.00 38.36 2.77
230 231 6.677781 TTGGTCTACATAGTAATGCAAAGC 57.322 37.500 0.00 0.00 36.50 3.51
231 232 5.739959 TGGTCTACATAGTAATGCAAAGCA 58.260 37.500 0.00 0.00 44.86 3.91
249 250 7.041187 CAAAGCATTGCAGTAAATTACAGTG 57.959 36.000 11.91 0.00 0.00 3.66
250 251 6.573664 AAGCATTGCAGTAAATTACAGTGA 57.426 33.333 11.91 0.00 0.00 3.41
251 252 5.942872 AGCATTGCAGTAAATTACAGTGAC 58.057 37.500 11.91 0.00 0.00 3.67
347 350 2.382882 TCAGCAGAGAGAATGGATCGT 58.617 47.619 0.00 0.00 0.00 3.73
543 546 0.733909 CACTCGAGCTGCATCGTTCA 60.734 55.000 13.61 2.79 43.20 3.18
612 615 2.838974 GCTGCGCCCAATCTAAGGC 61.839 63.158 4.18 0.00 46.17 4.35
728 736 1.819288 CCGTCTCTCCAAGCAGTAAGA 59.181 52.381 0.00 0.00 0.00 2.10
965 1003 4.985538 AGATCTGCAAAAACCAAGTCCTA 58.014 39.130 0.00 0.00 0.00 2.94
1981 2023 1.849039 AGAGGGAGCTACCGGTAGTAA 59.151 52.381 35.78 9.10 40.11 2.24
2839 2894 1.805869 AAGAGTGATGTGTGCTCAGC 58.194 50.000 0.00 0.00 0.00 4.26
2916 2971 8.330734 AAACCTTACGTTCAGACAATGGTACAA 61.331 37.037 0.00 0.00 35.82 2.41
2992 3047 6.229936 TCAAACTACCTGTGTTAACACTCT 57.770 37.500 32.58 19.68 46.55 3.24
3002 3057 7.608761 ACCTGTGTTAACACTCTAGAACAAAAA 59.391 33.333 32.58 12.06 46.55 1.94
3370 3425 2.026075 TGAGCATGGATGTGACATTCCA 60.026 45.455 15.59 15.59 45.69 3.53
3399 3454 8.044060 ACATGAATCATATTATGGCTTAACCG 57.956 34.615 0.00 0.00 43.94 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.743928 GACTCGTTGGCTGGGCAG 60.744 66.667 0.00 0.00 0.00 4.85
32 33 3.113514 TTGACTCGTTGGCTGGGCA 62.114 57.895 0.00 0.00 0.00 5.36
33 34 2.281484 TTGACTCGTTGGCTGGGC 60.281 61.111 0.00 0.00 0.00 5.36
34 35 2.317609 CGTTGACTCGTTGGCTGGG 61.318 63.158 0.00 0.00 0.00 4.45
35 36 2.954753 GCGTTGACTCGTTGGCTGG 61.955 63.158 0.00 0.00 0.00 4.85
36 37 1.891060 GAGCGTTGACTCGTTGGCTG 61.891 60.000 0.00 0.00 0.00 4.85
37 38 1.664965 GAGCGTTGACTCGTTGGCT 60.665 57.895 0.00 0.00 0.00 4.75
38 39 2.668280 GGAGCGTTGACTCGTTGGC 61.668 63.158 0.00 0.00 37.57 4.52
39 40 0.670546 ATGGAGCGTTGACTCGTTGG 60.671 55.000 0.00 0.00 37.57 3.77
40 41 0.439985 CATGGAGCGTTGACTCGTTG 59.560 55.000 0.00 0.00 37.57 4.10
41 42 1.291877 GCATGGAGCGTTGACTCGTT 61.292 55.000 0.00 0.00 37.57 3.85
42 43 1.738099 GCATGGAGCGTTGACTCGT 60.738 57.895 0.00 0.00 37.57 4.18
43 44 3.084579 GCATGGAGCGTTGACTCG 58.915 61.111 0.00 0.00 37.57 4.18
52 53 4.970662 TTTAATCAAGTGAGCATGGAGC 57.029 40.909 0.00 0.00 46.19 4.70
53 54 6.541278 TGAGATTTAATCAAGTGAGCATGGAG 59.459 38.462 7.74 0.00 0.00 3.86
54 55 6.417258 TGAGATTTAATCAAGTGAGCATGGA 58.583 36.000 7.74 0.00 0.00 3.41
55 56 6.318144 ACTGAGATTTAATCAAGTGAGCATGG 59.682 38.462 7.74 0.00 30.32 3.66
56 57 7.280428 AGACTGAGATTTAATCAAGTGAGCATG 59.720 37.037 14.99 0.00 31.25 4.06
57 58 7.337167 AGACTGAGATTTAATCAAGTGAGCAT 58.663 34.615 14.99 0.00 31.25 3.79
58 59 6.705302 AGACTGAGATTTAATCAAGTGAGCA 58.295 36.000 14.99 0.00 31.25 4.26
59 60 7.978975 AGTAGACTGAGATTTAATCAAGTGAGC 59.021 37.037 14.99 4.75 31.25 4.26
60 61 9.299963 CAGTAGACTGAGATTTAATCAAGTGAG 57.700 37.037 14.99 0.00 46.59 3.51
77 78 6.314896 CCAAAAGCCTAGAATTCAGTAGACTG 59.685 42.308 8.44 3.12 45.08 3.51
78 79 6.410540 CCAAAAGCCTAGAATTCAGTAGACT 58.589 40.000 8.44 0.00 0.00 3.24
79 80 5.065346 GCCAAAAGCCTAGAATTCAGTAGAC 59.935 44.000 8.44 0.00 34.35 2.59
80 81 5.186198 GCCAAAAGCCTAGAATTCAGTAGA 58.814 41.667 8.44 0.00 34.35 2.59
81 82 4.943705 TGCCAAAAGCCTAGAATTCAGTAG 59.056 41.667 8.44 1.58 42.71 2.57
82 83 4.917385 TGCCAAAAGCCTAGAATTCAGTA 58.083 39.130 8.44 0.00 42.71 2.74
83 84 3.766545 TGCCAAAAGCCTAGAATTCAGT 58.233 40.909 8.44 0.00 42.71 3.41
84 85 4.741342 CTTGCCAAAAGCCTAGAATTCAG 58.259 43.478 8.44 3.29 42.71 3.02
85 86 3.056607 GCTTGCCAAAAGCCTAGAATTCA 60.057 43.478 8.44 0.00 42.71 2.57
86 87 3.515630 GCTTGCCAAAAGCCTAGAATTC 58.484 45.455 0.00 0.00 42.71 2.17
87 88 3.599730 GCTTGCCAAAAGCCTAGAATT 57.400 42.857 0.00 0.00 42.71 2.17
95 96 1.604147 ATACCGGGCTTGCCAAAAGC 61.604 55.000 14.04 0.00 42.30 3.51
96 97 1.757682 TATACCGGGCTTGCCAAAAG 58.242 50.000 14.04 1.38 0.00 2.27
97 98 2.445682 ATATACCGGGCTTGCCAAAA 57.554 45.000 14.04 0.00 0.00 2.44
98 99 2.706723 TCTATATACCGGGCTTGCCAAA 59.293 45.455 14.04 0.00 0.00 3.28
99 100 2.331166 TCTATATACCGGGCTTGCCAA 58.669 47.619 14.04 0.00 0.00 4.52
100 101 2.018355 TCTATATACCGGGCTTGCCA 57.982 50.000 14.04 0.00 0.00 4.92
101 102 2.302157 ACTTCTATATACCGGGCTTGCC 59.698 50.000 6.32 2.49 0.00 4.52
102 103 3.679824 ACTTCTATATACCGGGCTTGC 57.320 47.619 6.32 0.00 0.00 4.01
103 104 5.393243 GCTCTACTTCTATATACCGGGCTTG 60.393 48.000 6.32 0.00 0.00 4.01
104 105 4.705991 GCTCTACTTCTATATACCGGGCTT 59.294 45.833 6.32 0.00 0.00 4.35
105 106 4.271661 GCTCTACTTCTATATACCGGGCT 58.728 47.826 6.32 0.00 0.00 5.19
106 107 3.065095 CGCTCTACTTCTATATACCGGGC 59.935 52.174 6.32 0.00 0.00 6.13
107 108 4.511527 TCGCTCTACTTCTATATACCGGG 58.488 47.826 6.32 0.00 0.00 5.73
108 109 6.492007 TTTCGCTCTACTTCTATATACCGG 57.508 41.667 0.00 0.00 0.00 5.28
109 110 7.804712 TCTTTTCGCTCTACTTCTATATACCG 58.195 38.462 0.00 0.00 0.00 4.02
114 115 9.947669 GTGTTATCTTTTCGCTCTACTTCTATA 57.052 33.333 0.00 0.00 0.00 1.31
115 116 8.467598 TGTGTTATCTTTTCGCTCTACTTCTAT 58.532 33.333 0.00 0.00 0.00 1.98
116 117 7.823665 TGTGTTATCTTTTCGCTCTACTTCTA 58.176 34.615 0.00 0.00 0.00 2.10
117 118 6.688578 TGTGTTATCTTTTCGCTCTACTTCT 58.311 36.000 0.00 0.00 0.00 2.85
118 119 6.946229 TGTGTTATCTTTTCGCTCTACTTC 57.054 37.500 0.00 0.00 0.00 3.01
119 120 7.095187 CCTTTGTGTTATCTTTTCGCTCTACTT 60.095 37.037 0.00 0.00 0.00 2.24
120 121 6.369065 CCTTTGTGTTATCTTTTCGCTCTACT 59.631 38.462 0.00 0.00 0.00 2.57
121 122 6.367969 TCCTTTGTGTTATCTTTTCGCTCTAC 59.632 38.462 0.00 0.00 0.00 2.59
122 123 6.367969 GTCCTTTGTGTTATCTTTTCGCTCTA 59.632 38.462 0.00 0.00 0.00 2.43
123 124 5.179555 GTCCTTTGTGTTATCTTTTCGCTCT 59.820 40.000 0.00 0.00 0.00 4.09
124 125 5.179555 AGTCCTTTGTGTTATCTTTTCGCTC 59.820 40.000 0.00 0.00 0.00 5.03
125 126 5.049405 CAGTCCTTTGTGTTATCTTTTCGCT 60.049 40.000 0.00 0.00 0.00 4.93
126 127 5.147162 CAGTCCTTTGTGTTATCTTTTCGC 58.853 41.667 0.00 0.00 0.00 4.70
127 128 6.300354 ACAGTCCTTTGTGTTATCTTTTCG 57.700 37.500 0.00 0.00 0.00 3.46
128 129 7.298854 GCTACAGTCCTTTGTGTTATCTTTTC 58.701 38.462 0.00 0.00 32.56 2.29
129 130 6.073222 CGCTACAGTCCTTTGTGTTATCTTTT 60.073 38.462 0.00 0.00 32.56 2.27
130 131 5.408604 CGCTACAGTCCTTTGTGTTATCTTT 59.591 40.000 0.00 0.00 32.56 2.52
131 132 4.929808 CGCTACAGTCCTTTGTGTTATCTT 59.070 41.667 0.00 0.00 32.56 2.40
132 133 4.021368 ACGCTACAGTCCTTTGTGTTATCT 60.021 41.667 0.00 0.00 32.56 1.98
133 134 4.243270 ACGCTACAGTCCTTTGTGTTATC 58.757 43.478 0.00 0.00 32.56 1.75
134 135 4.021368 AGACGCTACAGTCCTTTGTGTTAT 60.021 41.667 0.00 0.00 41.83 1.89
135 136 3.319972 AGACGCTACAGTCCTTTGTGTTA 59.680 43.478 0.00 0.00 41.83 2.41
136 137 2.102588 AGACGCTACAGTCCTTTGTGTT 59.897 45.455 0.00 0.00 41.83 3.32
137 138 1.687123 AGACGCTACAGTCCTTTGTGT 59.313 47.619 0.00 0.00 41.83 3.72
138 139 2.288213 TGAGACGCTACAGTCCTTTGTG 60.288 50.000 0.00 0.00 41.83 3.33
139 140 1.961394 TGAGACGCTACAGTCCTTTGT 59.039 47.619 0.00 0.00 41.83 2.83
140 141 2.724977 TGAGACGCTACAGTCCTTTG 57.275 50.000 0.00 0.00 41.83 2.77
141 142 2.675317 GCATGAGACGCTACAGTCCTTT 60.675 50.000 0.00 0.00 41.83 3.11
142 143 1.134965 GCATGAGACGCTACAGTCCTT 60.135 52.381 0.00 0.00 41.83 3.36
143 144 0.457851 GCATGAGACGCTACAGTCCT 59.542 55.000 0.00 0.00 41.83 3.85
144 145 0.457851 AGCATGAGACGCTACAGTCC 59.542 55.000 0.00 0.00 41.83 3.85
145 146 2.356382 ACTAGCATGAGACGCTACAGTC 59.644 50.000 0.00 0.00 40.96 3.51
146 147 2.370349 ACTAGCATGAGACGCTACAGT 58.630 47.619 0.00 0.00 40.96 3.55
147 148 4.757799 ATACTAGCATGAGACGCTACAG 57.242 45.455 0.00 0.00 40.96 2.74
148 149 6.127980 GGATAATACTAGCATGAGACGCTACA 60.128 42.308 0.00 0.00 40.96 2.74
149 150 6.127980 TGGATAATACTAGCATGAGACGCTAC 60.128 42.308 0.00 0.00 40.96 3.58
150 151 5.944007 TGGATAATACTAGCATGAGACGCTA 59.056 40.000 0.00 0.00 40.96 4.26
151 152 4.767409 TGGATAATACTAGCATGAGACGCT 59.233 41.667 0.00 0.00 43.62 5.07
152 153 5.060662 TGGATAATACTAGCATGAGACGC 57.939 43.478 0.00 0.00 0.00 5.19
153 154 5.968261 CGATGGATAATACTAGCATGAGACG 59.032 44.000 0.00 0.00 0.00 4.18
154 155 5.746245 GCGATGGATAATACTAGCATGAGAC 59.254 44.000 0.00 0.00 0.00 3.36
155 156 5.418840 TGCGATGGATAATACTAGCATGAGA 59.581 40.000 0.00 0.00 0.00 3.27
156 157 5.654497 TGCGATGGATAATACTAGCATGAG 58.346 41.667 0.00 0.00 0.00 2.90
157 158 5.654497 CTGCGATGGATAATACTAGCATGA 58.346 41.667 0.00 0.00 32.72 3.07
158 159 4.269603 GCTGCGATGGATAATACTAGCATG 59.730 45.833 0.00 0.00 32.72 4.06
159 160 4.161189 AGCTGCGATGGATAATACTAGCAT 59.839 41.667 0.00 0.00 32.72 3.79
160 161 3.511540 AGCTGCGATGGATAATACTAGCA 59.488 43.478 0.00 0.00 0.00 3.49
161 162 3.862267 CAGCTGCGATGGATAATACTAGC 59.138 47.826 0.00 0.00 0.00 3.42
162 163 4.158579 TCCAGCTGCGATGGATAATACTAG 59.841 45.833 8.66 0.00 41.96 2.57
163 164 4.086457 TCCAGCTGCGATGGATAATACTA 58.914 43.478 8.66 0.00 41.96 1.82
164 165 2.899900 TCCAGCTGCGATGGATAATACT 59.100 45.455 8.66 0.00 41.96 2.12
165 166 3.319137 TCCAGCTGCGATGGATAATAC 57.681 47.619 8.66 0.00 41.96 1.89
166 167 4.065088 GTTTCCAGCTGCGATGGATAATA 58.935 43.478 8.66 0.00 46.06 0.98
167 168 2.880890 GTTTCCAGCTGCGATGGATAAT 59.119 45.455 8.66 0.00 46.06 1.28
168 169 2.092968 AGTTTCCAGCTGCGATGGATAA 60.093 45.455 8.66 9.90 46.06 1.75
169 170 1.486310 AGTTTCCAGCTGCGATGGATA 59.514 47.619 8.66 8.62 46.06 2.59
170 171 0.254178 AGTTTCCAGCTGCGATGGAT 59.746 50.000 8.66 0.18 46.06 3.41
171 172 0.674581 CAGTTTCCAGCTGCGATGGA 60.675 55.000 8.66 10.74 45.15 3.41
172 173 1.798735 CAGTTTCCAGCTGCGATGG 59.201 57.895 8.66 6.51 39.33 3.51
178 179 2.582728 TTTGTTGCAGTTTCCAGCTG 57.417 45.000 6.78 6.78 37.06 4.24
179 180 2.735126 CGTTTTGTTGCAGTTTCCAGCT 60.735 45.455 0.00 0.00 0.00 4.24
180 181 1.587946 CGTTTTGTTGCAGTTTCCAGC 59.412 47.619 0.00 0.00 0.00 4.85
181 182 2.851824 GACGTTTTGTTGCAGTTTCCAG 59.148 45.455 0.00 0.00 0.00 3.86
182 183 2.229062 TGACGTTTTGTTGCAGTTTCCA 59.771 40.909 0.00 0.00 0.00 3.53
183 184 2.869897 TGACGTTTTGTTGCAGTTTCC 58.130 42.857 0.00 0.00 0.00 3.13
184 185 4.351192 AGATGACGTTTTGTTGCAGTTTC 58.649 39.130 0.00 0.00 0.00 2.78
185 186 4.370364 AGATGACGTTTTGTTGCAGTTT 57.630 36.364 0.00 0.00 0.00 2.66
186 187 4.370364 AAGATGACGTTTTGTTGCAGTT 57.630 36.364 0.00 0.00 0.00 3.16
187 188 4.104776 CAAAGATGACGTTTTGTTGCAGT 58.895 39.130 2.88 0.00 31.36 4.40
188 189 3.486841 CCAAAGATGACGTTTTGTTGCAG 59.513 43.478 9.03 0.00 33.52 4.41
189 190 3.119316 ACCAAAGATGACGTTTTGTTGCA 60.119 39.130 9.03 0.00 33.52 4.08
190 191 3.443976 ACCAAAGATGACGTTTTGTTGC 58.556 40.909 9.03 0.00 33.52 4.17
191 192 4.920376 AGACCAAAGATGACGTTTTGTTG 58.080 39.130 9.03 2.42 33.52 3.33
192 193 5.587043 TGTAGACCAAAGATGACGTTTTGTT 59.413 36.000 9.03 0.00 33.52 2.83
193 194 5.120399 TGTAGACCAAAGATGACGTTTTGT 58.880 37.500 9.03 0.00 33.52 2.83
194 195 5.666969 TGTAGACCAAAGATGACGTTTTG 57.333 39.130 3.89 3.89 34.79 2.44
195 196 7.159372 ACTATGTAGACCAAAGATGACGTTTT 58.841 34.615 0.00 0.00 0.00 2.43
196 197 6.698380 ACTATGTAGACCAAAGATGACGTTT 58.302 36.000 0.00 0.00 0.00 3.60
197 198 6.282199 ACTATGTAGACCAAAGATGACGTT 57.718 37.500 0.00 0.00 0.00 3.99
198 199 5.916661 ACTATGTAGACCAAAGATGACGT 57.083 39.130 0.00 0.00 0.00 4.34
199 200 7.096023 GCATTACTATGTAGACCAAAGATGACG 60.096 40.741 0.00 0.00 34.12 4.35
200 201 7.710907 TGCATTACTATGTAGACCAAAGATGAC 59.289 37.037 0.00 0.00 34.12 3.06
201 202 7.791029 TGCATTACTATGTAGACCAAAGATGA 58.209 34.615 0.00 0.00 34.12 2.92
202 203 8.437360 TTGCATTACTATGTAGACCAAAGATG 57.563 34.615 0.00 0.00 34.12 2.90
203 204 9.113838 CTTTGCATTACTATGTAGACCAAAGAT 57.886 33.333 0.00 0.00 38.14 2.40
204 205 7.065803 GCTTTGCATTACTATGTAGACCAAAGA 59.934 37.037 18.58 0.00 38.14 2.52
205 206 7.148255 TGCTTTGCATTACTATGTAGACCAAAG 60.148 37.037 0.00 0.00 38.49 2.77
206 207 6.657117 TGCTTTGCATTACTATGTAGACCAAA 59.343 34.615 0.00 0.00 31.71 3.28
207 208 6.176896 TGCTTTGCATTACTATGTAGACCAA 58.823 36.000 0.00 0.00 31.71 3.67
208 209 5.739959 TGCTTTGCATTACTATGTAGACCA 58.260 37.500 0.00 0.00 31.71 4.02
225 226 6.862608 TCACTGTAATTTACTGCAATGCTTTG 59.137 34.615 6.82 7.93 35.85 2.77
226 227 6.863126 GTCACTGTAATTTACTGCAATGCTTT 59.137 34.615 6.82 0.00 0.00 3.51
227 228 6.016360 TGTCACTGTAATTTACTGCAATGCTT 60.016 34.615 6.82 0.00 0.00 3.91
228 229 5.473162 TGTCACTGTAATTTACTGCAATGCT 59.527 36.000 6.82 0.00 0.00 3.79
229 230 5.698832 TGTCACTGTAATTTACTGCAATGC 58.301 37.500 11.94 0.00 0.00 3.56
230 231 7.809331 ACAATGTCACTGTAATTTACTGCAATG 59.191 33.333 11.94 8.68 0.00 2.82
231 232 7.885297 ACAATGTCACTGTAATTTACTGCAAT 58.115 30.769 11.94 0.00 0.00 3.56
232 233 7.270757 ACAATGTCACTGTAATTTACTGCAA 57.729 32.000 11.94 0.50 0.00 4.08
233 234 6.875948 ACAATGTCACTGTAATTTACTGCA 57.124 33.333 11.94 4.69 0.00 4.41
234 235 6.582295 CCAACAATGTCACTGTAATTTACTGC 59.418 38.462 11.94 0.00 0.00 4.40
235 236 7.591057 CACCAACAATGTCACTGTAATTTACTG 59.409 37.037 10.79 10.79 0.00 2.74
236 237 7.284489 ACACCAACAATGTCACTGTAATTTACT 59.716 33.333 7.99 0.00 0.00 2.24
237 238 7.378461 CACACCAACAATGTCACTGTAATTTAC 59.622 37.037 0.00 0.00 0.00 2.01
238 239 7.067615 ACACACCAACAATGTCACTGTAATTTA 59.932 33.333 0.00 0.00 0.00 1.40
239 240 6.127479 ACACACCAACAATGTCACTGTAATTT 60.127 34.615 0.00 0.00 0.00 1.82
240 241 5.359576 ACACACCAACAATGTCACTGTAATT 59.640 36.000 0.00 0.00 0.00 1.40
241 242 4.887071 ACACACCAACAATGTCACTGTAAT 59.113 37.500 0.00 0.00 0.00 1.89
242 243 4.265893 ACACACCAACAATGTCACTGTAA 58.734 39.130 0.00 0.00 0.00 2.41
243 244 3.879998 ACACACCAACAATGTCACTGTA 58.120 40.909 0.00 0.00 0.00 2.74
244 245 2.722094 ACACACCAACAATGTCACTGT 58.278 42.857 0.00 0.00 0.00 3.55
245 246 4.126437 TCTACACACCAACAATGTCACTG 58.874 43.478 0.00 0.00 0.00 3.66
246 247 4.415881 TCTACACACCAACAATGTCACT 57.584 40.909 0.00 0.00 0.00 3.41
247 248 6.795098 TTATCTACACACCAACAATGTCAC 57.205 37.500 0.00 0.00 0.00 3.67
248 249 6.939730 ACATTATCTACACACCAACAATGTCA 59.060 34.615 0.00 0.00 31.57 3.58
249 250 7.377766 ACATTATCTACACACCAACAATGTC 57.622 36.000 0.00 0.00 31.57 3.06
250 251 8.856153 TTACATTATCTACACACCAACAATGT 57.144 30.769 0.00 0.00 38.51 2.71
506 509 0.034574 TGCCCACAGCCGTAAATCAT 60.035 50.000 0.00 0.00 42.71 2.45
612 615 0.673022 GAGAGGCAGTCAACAGGCTG 60.673 60.000 14.16 14.16 38.33 4.85
728 736 9.376075 CACTAATCAATGAAGTACAGAAGACAT 57.624 33.333 0.00 0.00 0.00 3.06
1584 1626 3.166560 AGGCCATCAAGAAAGAGCTTT 57.833 42.857 5.01 0.00 35.14 3.51
1821 1863 1.327303 CAGGCCTTTTGCAGTGGTTA 58.673 50.000 0.00 0.00 43.89 2.85
1981 2023 0.610174 TCCTCAAGAGCTCGCACATT 59.390 50.000 8.37 0.00 0.00 2.71
2916 2971 6.549364 TGTTCAAACTCCTGGTTCATGTATTT 59.451 34.615 0.00 0.00 37.12 1.40
2992 3047 4.202010 GCTCTGCAACACCTTTTTGTTCTA 60.202 41.667 0.00 0.00 37.62 2.10
3002 3057 1.961793 TTTTACGCTCTGCAACACCT 58.038 45.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.