Multiple sequence alignment - TraesCS4A01G060400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G060400 chr4A 100.000 5649 0 0 1 5649 57162219 57167867 0.000000e+00 10432.0
1 TraesCS4A01G060400 chr4B 92.470 4847 180 54 287 5043 493526466 493531217 0.000000e+00 6758.0
2 TraesCS4A01G060400 chr4B 88.641 537 20 10 5142 5649 493533004 493533528 2.890000e-172 616.0
3 TraesCS4A01G060400 chr4B 86.432 398 32 12 2775 3163 184601009 184601393 3.150000e-112 416.0
4 TraesCS4A01G060400 chr4D 92.488 4699 184 64 291 4889 399530479 399535108 0.000000e+00 6565.0
5 TraesCS4A01G060400 chr4D 90.821 719 29 8 4947 5649 399535108 399535805 0.000000e+00 928.0
6 TraesCS4A01G060400 chr1D 86.783 401 27 14 2775 3163 403278531 403278145 1.880000e-114 424.0
7 TraesCS4A01G060400 chr2D 86.750 400 28 15 2775 3163 579178649 579179034 6.770000e-114 422.0
8 TraesCS4A01G060400 chrUn 100.000 146 0 0 1 146 446219442 446219587 2.590000e-68 270.0
9 TraesCS4A01G060400 chrUn 100.000 146 0 0 1 146 453924014 453923869 2.590000e-68 270.0
10 TraesCS4A01G060400 chr6B 100.000 146 0 0 1 146 564733283 564733428 2.590000e-68 270.0
11 TraesCS4A01G060400 chr6B 100.000 146 0 0 1 146 662724429 662724574 2.590000e-68 270.0
12 TraesCS4A01G060400 chr6B 98.052 154 0 3 1 153 336343853 336343702 1.210000e-66 265.0
13 TraesCS4A01G060400 chr1B 100.000 146 0 0 1 146 70929931 70930076 2.590000e-68 270.0
14 TraesCS4A01G060400 chr1B 100.000 146 0 0 1 146 406790898 406791043 2.590000e-68 270.0
15 TraesCS4A01G060400 chr1B 100.000 146 0 0 1 146 411612491 411612346 2.590000e-68 270.0
16 TraesCS4A01G060400 chr1B 100.000 146 0 0 1 146 428088952 428088807 2.590000e-68 270.0
17 TraesCS4A01G060400 chr1A 87.845 181 20 2 5049 5227 120379954 120380134 1.590000e-50 211.0
18 TraesCS4A01G060400 chr5A 87.821 156 11 3 2775 2924 615832928 615832775 5.820000e-40 176.0
19 TraesCS4A01G060400 chr5A 87.179 156 12 3 2775 2924 615773816 615773663 2.710000e-38 171.0
20 TraesCS4A01G060400 chr5A 86.614 127 15 2 4032 4157 597256923 597257048 7.630000e-29 139.0
21 TraesCS4A01G060400 chr2B 86.335 161 20 2 5038 5196 195678239 195678079 2.090000e-39 174.0
22 TraesCS4A01G060400 chr7D 81.991 211 20 11 2958 3163 559288468 559288271 4.530000e-36 163.0
23 TraesCS4A01G060400 chr7D 88.722 133 6 4 2775 2900 559288594 559288464 2.730000e-33 154.0
24 TraesCS4A01G060400 chr5B 87.402 127 14 2 4032 4157 585475640 585475765 1.640000e-30 145.0
25 TraesCS4A01G060400 chr5D 86.614 127 15 2 4032 4157 477986488 477986613 7.630000e-29 139.0
26 TraesCS4A01G060400 chr2A 91.781 73 6 0 5045 5117 140366705 140366633 1.000000e-17 102.0
27 TraesCS4A01G060400 chr7B 81.013 79 10 5 1480 1556 708118974 708118899 2.200000e-04 58.4
28 TraesCS4A01G060400 chr7B 92.105 38 2 1 1517 1554 708118964 708118928 1.000000e-02 52.8
29 TraesCS4A01G060400 chr7A 100.000 28 0 0 1529 1556 708146949 708146922 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G060400 chr4A 57162219 57167867 5648 False 10432.0 10432 100.0000 1 5649 1 chr4A.!!$F1 5648
1 TraesCS4A01G060400 chr4B 493526466 493533528 7062 False 3687.0 6758 90.5555 287 5649 2 chr4B.!!$F2 5362
2 TraesCS4A01G060400 chr4D 399530479 399535805 5326 False 3746.5 6565 91.6545 291 5649 2 chr4D.!!$F1 5358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.032267 GACACGTGGGAGCTATAGCC 59.968 60.000 21.17 12.26 43.38 3.93 F
274 275 0.038526 CGTTGGAGTTGCTCGTAGGT 60.039 55.000 0.00 0.00 0.00 3.08 F
1839 1893 0.394352 GTAATGGTGGTGGGGAGCAG 60.394 60.000 0.00 0.00 0.00 4.24 F
2604 2683 1.302832 CCACCTCTGGGACAACAGC 60.303 63.158 0.00 0.00 38.70 4.40 F
3694 3787 0.537143 TGTGCGTTGCTTTGGGATCT 60.537 50.000 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1500 0.606130 TGTAGTAGGTGACCGCGTCA 60.606 55.0 4.92 6.31 40.50 4.35 R
1843 1897 0.671781 CTCTTCTTCCCCACGCACTG 60.672 60.0 0.00 0.00 0.00 3.66 R
2761 2841 0.247736 AGACACCATTCGAGCCAGAC 59.752 55.0 0.00 0.00 0.00 3.51 R
4226 4356 0.465097 CCTTCTTCGGCATGGCTGAT 60.465 55.0 18.09 0.00 43.86 2.90 R
5518 7416 0.173255 CGGCCGCTTTGGAATGATTT 59.827 50.0 14.67 0.00 42.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.141767 GCCAACTATGTTATCTCCCCC 57.858 52.381 0.00 0.00 0.00 5.40
21 22 2.711547 GCCAACTATGTTATCTCCCCCT 59.288 50.000 0.00 0.00 0.00 4.79
22 23 3.138468 GCCAACTATGTTATCTCCCCCTT 59.862 47.826 0.00 0.00 0.00 3.95
23 24 4.386424 GCCAACTATGTTATCTCCCCCTTT 60.386 45.833 0.00 0.00 0.00 3.11
24 25 5.163131 GCCAACTATGTTATCTCCCCCTTTA 60.163 44.000 0.00 0.00 0.00 1.85
25 26 6.467339 GCCAACTATGTTATCTCCCCCTTTAT 60.467 42.308 0.00 0.00 0.00 1.40
26 27 7.526918 CCAACTATGTTATCTCCCCCTTTATT 58.473 38.462 0.00 0.00 0.00 1.40
27 28 8.665906 CCAACTATGTTATCTCCCCCTTTATTA 58.334 37.037 0.00 0.00 0.00 0.98
30 31 9.406662 ACTATGTTATCTCCCCCTTTATTATGT 57.593 33.333 0.00 0.00 0.00 2.29
39 40 8.611257 TCTCCCCCTTTATTATGTATTACATGG 58.389 37.037 17.68 9.77 39.53 3.66
40 41 7.704727 TCCCCCTTTATTATGTATTACATGGG 58.295 38.462 17.68 16.62 39.53 4.00
41 42 7.521468 TCCCCCTTTATTATGTATTACATGGGA 59.479 37.037 21.09 19.13 39.53 4.37
42 43 8.343787 CCCCCTTTATTATGTATTACATGGGAT 58.656 37.037 21.09 13.98 39.53 3.85
43 44 9.189156 CCCCTTTATTATGTATTACATGGGATG 57.811 37.037 21.09 8.40 39.53 3.51
44 45 9.753674 CCCTTTATTATGTATTACATGGGATGT 57.246 33.333 17.68 0.00 46.92 3.06
53 54 9.812347 ATGTATTACATGGGATGTTGTAATGAT 57.188 29.630 8.51 7.17 44.56 2.45
54 55 9.639563 TGTATTACATGGGATGTTGTAATGATT 57.360 29.630 15.12 0.00 44.56 2.57
55 56 9.897744 GTATTACATGGGATGTTGTAATGATTG 57.102 33.333 15.12 0.00 44.56 2.67
56 57 5.266733 ACATGGGATGTTGTAATGATTGC 57.733 39.130 0.00 0.00 41.63 3.56
57 58 4.099881 ACATGGGATGTTGTAATGATTGCC 59.900 41.667 0.00 0.00 41.63 4.52
58 59 3.979911 TGGGATGTTGTAATGATTGCCT 58.020 40.909 0.00 0.00 0.00 4.75
59 60 3.700539 TGGGATGTTGTAATGATTGCCTG 59.299 43.478 0.00 0.00 0.00 4.85
60 61 3.953612 GGGATGTTGTAATGATTGCCTGA 59.046 43.478 0.00 0.00 0.00 3.86
61 62 4.202050 GGGATGTTGTAATGATTGCCTGAC 60.202 45.833 0.00 0.00 0.00 3.51
62 63 4.641989 GGATGTTGTAATGATTGCCTGACT 59.358 41.667 0.00 0.00 0.00 3.41
63 64 5.126061 GGATGTTGTAATGATTGCCTGACTT 59.874 40.000 0.00 0.00 0.00 3.01
64 65 5.375417 TGTTGTAATGATTGCCTGACTTG 57.625 39.130 0.00 0.00 0.00 3.16
65 66 4.168760 GTTGTAATGATTGCCTGACTTGC 58.831 43.478 0.00 0.00 0.00 4.01
66 67 2.419673 TGTAATGATTGCCTGACTTGCG 59.580 45.455 0.00 0.00 0.00 4.85
67 68 1.825090 AATGATTGCCTGACTTGCGA 58.175 45.000 0.00 0.00 0.00 5.10
68 69 1.089920 ATGATTGCCTGACTTGCGAC 58.910 50.000 0.00 0.00 0.00 5.19
69 70 0.250252 TGATTGCCTGACTTGCGACA 60.250 50.000 0.00 0.00 0.00 4.35
70 71 1.089920 GATTGCCTGACTTGCGACAT 58.910 50.000 0.00 0.00 0.00 3.06
71 72 1.470098 GATTGCCTGACTTGCGACATT 59.530 47.619 0.00 0.00 0.00 2.71
72 73 0.592637 TTGCCTGACTTGCGACATTG 59.407 50.000 0.00 0.00 0.00 2.82
73 74 1.154150 GCCTGACTTGCGACATTGC 60.154 57.895 0.00 0.00 0.00 3.56
74 75 1.580845 GCCTGACTTGCGACATTGCT 61.581 55.000 0.00 0.00 35.36 3.91
75 76 0.877071 CCTGACTTGCGACATTGCTT 59.123 50.000 0.00 0.00 35.36 3.91
76 77 1.267806 CCTGACTTGCGACATTGCTTT 59.732 47.619 0.00 0.00 35.36 3.51
77 78 2.578495 CTGACTTGCGACATTGCTTTC 58.422 47.619 0.00 0.00 35.36 2.62
78 79 1.946081 TGACTTGCGACATTGCTTTCA 59.054 42.857 0.00 0.00 35.36 2.69
79 80 2.357323 TGACTTGCGACATTGCTTTCAA 59.643 40.909 0.00 0.00 36.51 2.69
80 81 3.004629 TGACTTGCGACATTGCTTTCAAT 59.995 39.130 0.00 0.00 43.31 2.57
90 91 2.276472 TGCTTTCAATGCGGTTATGC 57.724 45.000 0.00 0.00 0.00 3.14
91 92 1.135141 TGCTTTCAATGCGGTTATGCC 60.135 47.619 0.00 0.00 0.00 4.40
92 93 1.134946 GCTTTCAATGCGGTTATGCCT 59.865 47.619 0.00 0.00 34.25 4.75
93 94 2.796032 GCTTTCAATGCGGTTATGCCTC 60.796 50.000 0.00 0.00 34.25 4.70
94 95 2.418368 TTCAATGCGGTTATGCCTCT 57.582 45.000 0.00 0.00 34.25 3.69
95 96 3.552132 TTCAATGCGGTTATGCCTCTA 57.448 42.857 0.00 0.00 34.25 2.43
96 97 3.552132 TCAATGCGGTTATGCCTCTAA 57.448 42.857 0.00 0.00 34.25 2.10
97 98 3.466836 TCAATGCGGTTATGCCTCTAAG 58.533 45.455 0.00 0.00 34.25 2.18
98 99 3.118408 TCAATGCGGTTATGCCTCTAAGT 60.118 43.478 0.00 0.00 34.25 2.24
99 100 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
100 101 1.202371 TGCGGTTATGCCTCTAAGTCG 60.202 52.381 0.00 0.00 34.25 4.18
101 102 1.202382 GCGGTTATGCCTCTAAGTCGT 60.202 52.381 0.00 0.00 34.25 4.34
102 103 2.460918 CGGTTATGCCTCTAAGTCGTG 58.539 52.381 0.00 0.00 34.25 4.35
103 104 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
104 105 2.202566 GTTATGCCTCTAAGTCGTGCC 58.797 52.381 0.00 0.00 0.00 5.01
105 106 1.776662 TATGCCTCTAAGTCGTGCCT 58.223 50.000 0.00 0.00 0.00 4.75
106 107 0.461961 ATGCCTCTAAGTCGTGCCTC 59.538 55.000 0.00 0.00 0.00 4.70
107 108 1.226717 GCCTCTAAGTCGTGCCTCG 60.227 63.158 0.00 0.00 41.41 4.63
108 109 1.654954 GCCTCTAAGTCGTGCCTCGA 61.655 60.000 0.00 0.00 46.83 4.04
117 118 3.986006 GTGCCTCGACACGTGGGA 61.986 66.667 21.57 15.34 40.31 4.37
118 119 3.680786 TGCCTCGACACGTGGGAG 61.681 66.667 24.04 24.04 40.31 4.30
120 121 3.374402 CCTCGACACGTGGGAGCT 61.374 66.667 25.04 4.48 36.95 4.09
121 122 2.044555 CCTCGACACGTGGGAGCTA 61.045 63.158 25.04 4.72 36.95 3.32
122 123 1.384989 CCTCGACACGTGGGAGCTAT 61.385 60.000 25.04 3.08 36.95 2.97
123 124 1.306148 CTCGACACGTGGGAGCTATA 58.694 55.000 21.57 0.00 0.00 1.31
124 125 1.264557 CTCGACACGTGGGAGCTATAG 59.735 57.143 21.57 0.00 0.00 1.31
125 126 0.317938 CGACACGTGGGAGCTATAGC 60.318 60.000 21.57 17.33 42.49 2.97
126 127 0.032267 GACACGTGGGAGCTATAGCC 59.968 60.000 21.17 12.26 43.38 3.93
127 128 1.007271 CACGTGGGAGCTATAGCCG 60.007 63.158 21.17 18.10 43.38 5.52
128 129 2.049063 CGTGGGAGCTATAGCCGC 60.049 66.667 21.17 19.02 43.38 6.53
129 130 2.856628 CGTGGGAGCTATAGCCGCA 61.857 63.158 21.17 21.10 43.38 5.69
130 131 1.674057 GTGGGAGCTATAGCCGCAT 59.326 57.895 24.89 9.43 43.38 4.73
131 132 0.390472 GTGGGAGCTATAGCCGCATC 60.390 60.000 24.89 15.99 43.38 3.91
132 133 1.153745 GGGAGCTATAGCCGCATCG 60.154 63.158 21.17 0.00 43.38 3.84
133 134 1.595993 GGGAGCTATAGCCGCATCGA 61.596 60.000 21.17 0.00 43.38 3.59
134 135 0.179150 GGAGCTATAGCCGCATCGAG 60.179 60.000 21.17 0.00 43.38 4.04
135 136 0.179150 GAGCTATAGCCGCATCGAGG 60.179 60.000 21.17 0.00 43.38 4.63
136 137 1.153745 GCTATAGCCGCATCGAGGG 60.154 63.158 14.13 0.00 34.31 4.30
144 145 4.195308 GCATCGAGGGCGTTACAA 57.805 55.556 0.00 0.00 38.98 2.41
145 146 2.006772 GCATCGAGGGCGTTACAAG 58.993 57.895 0.00 0.00 38.98 3.16
146 147 1.429148 GCATCGAGGGCGTTACAAGG 61.429 60.000 0.00 0.00 38.98 3.61
147 148 0.108329 CATCGAGGGCGTTACAAGGT 60.108 55.000 0.00 0.00 38.98 3.50
148 149 0.175073 ATCGAGGGCGTTACAAGGTC 59.825 55.000 0.00 0.00 38.98 3.85
149 150 1.180456 TCGAGGGCGTTACAAGGTCA 61.180 55.000 0.00 0.00 38.98 4.02
150 151 0.108329 CGAGGGCGTTACAAGGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
151 152 1.653151 GAGGGCGTTACAAGGTCATC 58.347 55.000 0.00 0.00 0.00 2.92
152 153 0.252197 AGGGCGTTACAAGGTCATCC 59.748 55.000 0.00 0.00 0.00 3.51
153 154 1.087771 GGGCGTTACAAGGTCATCCG 61.088 60.000 0.00 0.00 39.05 4.18
154 155 1.087771 GGCGTTACAAGGTCATCCGG 61.088 60.000 0.00 0.00 39.05 5.14
155 156 1.702491 GCGTTACAAGGTCATCCGGC 61.702 60.000 0.00 0.00 39.05 6.13
156 157 1.418342 CGTTACAAGGTCATCCGGCG 61.418 60.000 0.00 0.00 39.05 6.46
157 158 1.087771 GTTACAAGGTCATCCGGCGG 61.088 60.000 22.51 22.51 39.05 6.13
158 159 1.259142 TTACAAGGTCATCCGGCGGA 61.259 55.000 33.10 33.10 39.05 5.54
159 160 1.952102 TACAAGGTCATCCGGCGGAC 61.952 60.000 33.71 19.66 39.05 4.79
160 161 4.143333 AAGGTCATCCGGCGGACG 62.143 66.667 33.71 25.56 43.80 4.79
170 171 3.785499 GGCGGACGAAAAGCGGAC 61.785 66.667 0.00 0.00 46.49 4.79
171 172 4.130281 GCGGACGAAAAGCGGACG 62.130 66.667 0.00 0.00 46.49 4.79
172 173 4.130281 CGGACGAAAAGCGGACGC 62.130 66.667 8.91 8.91 46.49 5.19
187 188 2.398903 GACGCGTGTCATTTAAGTCG 57.601 50.000 20.70 0.00 44.82 4.18
188 189 1.058695 GACGCGTGTCATTTAAGTCGG 59.941 52.381 20.70 0.00 44.82 4.79
189 190 0.247145 CGCGTGTCATTTAAGTCGGC 60.247 55.000 0.00 0.00 0.00 5.54
190 191 0.247145 GCGTGTCATTTAAGTCGGCG 60.247 55.000 0.00 0.00 0.00 6.46
191 192 0.247145 CGTGTCATTTAAGTCGGCGC 60.247 55.000 0.00 0.00 0.00 6.53
192 193 0.247145 GTGTCATTTAAGTCGGCGCG 60.247 55.000 0.00 0.00 0.00 6.86
193 194 0.668096 TGTCATTTAAGTCGGCGCGT 60.668 50.000 8.43 0.00 0.00 6.01
194 195 0.441145 GTCATTTAAGTCGGCGCGTT 59.559 50.000 8.43 0.00 0.00 4.84
195 196 0.440758 TCATTTAAGTCGGCGCGTTG 59.559 50.000 8.43 0.00 0.00 4.10
196 197 0.520412 CATTTAAGTCGGCGCGTTGG 60.520 55.000 8.43 0.00 0.00 3.77
197 198 0.671163 ATTTAAGTCGGCGCGTTGGA 60.671 50.000 8.43 0.00 0.00 3.53
198 199 1.559149 TTTAAGTCGGCGCGTTGGAC 61.559 55.000 8.43 12.84 0.00 4.02
199 200 3.919973 TAAGTCGGCGCGTTGGACC 62.920 63.158 18.14 6.23 0.00 4.46
205 206 3.419759 GCGCGTTGGACCGATGTT 61.420 61.111 8.43 0.00 0.00 2.71
206 207 2.961669 GCGCGTTGGACCGATGTTT 61.962 57.895 8.43 0.00 0.00 2.83
207 208 1.131826 CGCGTTGGACCGATGTTTC 59.868 57.895 0.00 0.00 0.00 2.78
208 209 1.289109 CGCGTTGGACCGATGTTTCT 61.289 55.000 0.00 0.00 0.00 2.52
209 210 0.165944 GCGTTGGACCGATGTTTCTG 59.834 55.000 2.77 0.00 0.00 3.02
210 211 1.508632 CGTTGGACCGATGTTTCTGT 58.491 50.000 0.00 0.00 0.00 3.41
211 212 1.459592 CGTTGGACCGATGTTTCTGTC 59.540 52.381 0.00 0.00 35.89 3.51
215 216 2.163818 GACCGATGTTTCTGTCCACA 57.836 50.000 0.00 0.00 31.86 4.17
216 217 2.489971 GACCGATGTTTCTGTCCACAA 58.510 47.619 0.00 0.00 31.86 3.33
217 218 2.218603 ACCGATGTTTCTGTCCACAAC 58.781 47.619 0.00 0.00 0.00 3.32
218 219 1.194547 CCGATGTTTCTGTCCACAACG 59.805 52.381 0.00 0.00 38.51 4.10
219 220 2.131972 CGATGTTTCTGTCCACAACGA 58.868 47.619 0.00 0.00 40.51 3.85
220 221 2.736721 CGATGTTTCTGTCCACAACGAT 59.263 45.455 0.00 0.00 40.51 3.73
221 222 3.186409 CGATGTTTCTGTCCACAACGATT 59.814 43.478 0.00 0.00 40.51 3.34
222 223 4.666655 CGATGTTTCTGTCCACAACGATTC 60.667 45.833 0.00 0.00 40.51 2.52
223 224 3.536570 TGTTTCTGTCCACAACGATTCA 58.463 40.909 0.00 0.00 0.00 2.57
224 225 3.942115 TGTTTCTGTCCACAACGATTCAA 59.058 39.130 0.00 0.00 0.00 2.69
225 226 4.396478 TGTTTCTGTCCACAACGATTCAAA 59.604 37.500 0.00 0.00 0.00 2.69
226 227 5.067153 TGTTTCTGTCCACAACGATTCAAAT 59.933 36.000 0.00 0.00 0.00 2.32
227 228 4.747540 TCTGTCCACAACGATTCAAATG 57.252 40.909 0.00 0.00 0.00 2.32
228 229 3.501828 TCTGTCCACAACGATTCAAATGG 59.498 43.478 0.00 0.00 0.00 3.16
229 230 3.481453 TGTCCACAACGATTCAAATGGA 58.519 40.909 0.00 0.00 33.86 3.41
230 231 3.821841 GTCCACAACGATTCAAATGGAC 58.178 45.455 5.53 5.53 46.69 4.02
231 232 3.481453 TCCACAACGATTCAAATGGACA 58.519 40.909 0.00 0.00 31.30 4.02
232 233 3.252215 TCCACAACGATTCAAATGGACAC 59.748 43.478 0.00 0.00 31.30 3.67
233 234 3.225548 CACAACGATTCAAATGGACACG 58.774 45.455 0.00 0.00 0.00 4.49
234 235 2.875933 ACAACGATTCAAATGGACACGT 59.124 40.909 0.00 0.00 38.53 4.49
235 236 3.225548 CAACGATTCAAATGGACACGTG 58.774 45.455 15.48 15.48 37.51 4.49
236 237 2.489971 ACGATTCAAATGGACACGTGT 58.510 42.857 23.64 23.64 36.59 4.49
237 238 2.875933 ACGATTCAAATGGACACGTGTT 59.124 40.909 24.26 3.67 36.59 3.32
238 239 3.314080 ACGATTCAAATGGACACGTGTTT 59.686 39.130 24.26 10.66 36.59 2.83
239 240 4.512198 ACGATTCAAATGGACACGTGTTTA 59.488 37.500 24.26 15.15 36.59 2.01
240 241 4.843984 CGATTCAAATGGACACGTGTTTAC 59.156 41.667 24.26 16.32 0.00 2.01
241 242 5.559225 CGATTCAAATGGACACGTGTTTACA 60.559 40.000 24.26 21.22 0.00 2.41
242 243 5.562506 TTCAAATGGACACGTGTTTACAA 57.437 34.783 24.26 3.73 0.00 2.41
243 244 5.562506 TCAAATGGACACGTGTTTACAAA 57.437 34.783 24.26 5.56 0.00 2.83
244 245 5.950883 TCAAATGGACACGTGTTTACAAAA 58.049 33.333 24.26 4.40 0.00 2.44
245 246 6.565234 TCAAATGGACACGTGTTTACAAAAT 58.435 32.000 24.26 10.19 0.00 1.82
246 247 6.473778 TCAAATGGACACGTGTTTACAAAATG 59.526 34.615 24.26 18.99 0.00 2.32
247 248 4.294416 TGGACACGTGTTTACAAAATGG 57.706 40.909 24.26 0.00 0.00 3.16
248 249 3.066900 TGGACACGTGTTTACAAAATGGG 59.933 43.478 24.26 0.00 0.00 4.00
249 250 3.067040 GGACACGTGTTTACAAAATGGGT 59.933 43.478 24.26 0.00 0.00 4.51
250 251 4.284485 GACACGTGTTTACAAAATGGGTC 58.716 43.478 24.26 0.14 0.00 4.46
251 252 3.949113 ACACGTGTTTACAAAATGGGTCT 59.051 39.130 17.22 0.00 0.00 3.85
252 253 5.124645 ACACGTGTTTACAAAATGGGTCTA 58.875 37.500 17.22 0.00 0.00 2.59
253 254 5.007921 ACACGTGTTTACAAAATGGGTCTAC 59.992 40.000 17.22 0.00 0.00 2.59
254 255 4.211794 ACGTGTTTACAAAATGGGTCTACG 59.788 41.667 0.00 0.00 0.00 3.51
255 256 4.469552 GTGTTTACAAAATGGGTCTACGC 58.530 43.478 0.00 0.00 0.00 4.42
256 257 3.186817 TGTTTACAAAATGGGTCTACGCG 59.813 43.478 3.53 3.53 0.00 6.01
257 258 2.747396 TACAAAATGGGTCTACGCGT 57.253 45.000 19.17 19.17 0.00 6.01
258 259 1.886886 ACAAAATGGGTCTACGCGTT 58.113 45.000 20.78 0.80 39.31 4.84
259 260 1.533731 ACAAAATGGGTCTACGCGTTG 59.466 47.619 20.78 17.33 37.94 4.10
260 261 1.135803 CAAAATGGGTCTACGCGTTGG 60.136 52.381 20.78 11.62 37.94 3.77
261 262 0.322322 AAATGGGTCTACGCGTTGGA 59.678 50.000 20.78 14.08 37.94 3.53
262 263 0.108329 AATGGGTCTACGCGTTGGAG 60.108 55.000 20.78 9.56 36.78 3.86
263 264 1.255667 ATGGGTCTACGCGTTGGAGT 61.256 55.000 20.78 0.00 0.00 3.85
264 265 1.291272 GGGTCTACGCGTTGGAGTT 59.709 57.895 20.78 0.00 0.00 3.01
265 266 1.012486 GGGTCTACGCGTTGGAGTTG 61.012 60.000 20.78 0.00 0.00 3.16
266 267 1.623973 GGTCTACGCGTTGGAGTTGC 61.624 60.000 20.78 4.50 0.00 4.17
267 268 0.666577 GTCTACGCGTTGGAGTTGCT 60.667 55.000 20.78 0.00 0.00 3.91
268 269 0.388134 TCTACGCGTTGGAGTTGCTC 60.388 55.000 20.78 0.00 0.00 4.26
269 270 1.674611 CTACGCGTTGGAGTTGCTCG 61.675 60.000 20.78 0.00 0.00 5.03
270 271 2.410638 TACGCGTTGGAGTTGCTCGT 62.411 55.000 20.78 0.00 0.00 4.18
271 272 1.731613 CGCGTTGGAGTTGCTCGTA 60.732 57.895 0.00 0.00 0.00 3.43
272 273 1.674611 CGCGTTGGAGTTGCTCGTAG 61.675 60.000 0.00 0.00 0.00 3.51
273 274 1.352156 GCGTTGGAGTTGCTCGTAGG 61.352 60.000 0.00 0.00 0.00 3.18
274 275 0.038526 CGTTGGAGTTGCTCGTAGGT 60.039 55.000 0.00 0.00 0.00 3.08
275 276 1.604693 CGTTGGAGTTGCTCGTAGGTT 60.605 52.381 0.00 0.00 0.00 3.50
276 277 1.798813 GTTGGAGTTGCTCGTAGGTTG 59.201 52.381 0.00 0.00 0.00 3.77
277 278 1.334160 TGGAGTTGCTCGTAGGTTGA 58.666 50.000 0.00 0.00 0.00 3.18
278 279 1.689813 TGGAGTTGCTCGTAGGTTGAA 59.310 47.619 0.00 0.00 0.00 2.69
279 280 2.288825 TGGAGTTGCTCGTAGGTTGAAG 60.289 50.000 0.00 0.00 0.00 3.02
280 281 2.029290 GGAGTTGCTCGTAGGTTGAAGA 60.029 50.000 0.00 0.00 0.00 2.87
281 282 3.368531 GGAGTTGCTCGTAGGTTGAAGAT 60.369 47.826 0.00 0.00 0.00 2.40
282 283 3.589988 AGTTGCTCGTAGGTTGAAGATG 58.410 45.455 0.00 0.00 0.00 2.90
283 284 2.010145 TGCTCGTAGGTTGAAGATGC 57.990 50.000 0.00 0.00 0.00 3.91
284 285 1.291132 GCTCGTAGGTTGAAGATGCC 58.709 55.000 0.00 0.00 0.00 4.40
285 286 1.941325 CTCGTAGGTTGAAGATGCCC 58.059 55.000 0.00 0.00 0.00 5.36
289 290 3.709653 TCGTAGGTTGAAGATGCCCTTAT 59.290 43.478 0.00 0.00 34.68 1.73
306 307 3.637229 CCTTATCGGATACACTCACCTGT 59.363 47.826 0.00 0.00 33.16 4.00
309 310 1.471287 TCGGATACACTCACCTGTTCG 59.529 52.381 0.00 0.00 0.00 3.95
407 408 2.609244 GCTACTATGTCTAGGCAGCAGC 60.609 54.545 2.27 4.93 37.22 5.25
431 432 3.325293 ACTAGTGCATGACAGGTTGAG 57.675 47.619 0.00 0.00 0.00 3.02
443 444 3.153919 ACAGGTTGAGAGAGAGTGAGAC 58.846 50.000 0.00 0.00 0.00 3.36
525 536 9.831737 CGATTAAATTCTTGCATCTTTATAGGG 57.168 33.333 0.00 0.00 0.00 3.53
527 538 9.660544 ATTAAATTCTTGCATCTTTATAGGGGT 57.339 29.630 0.00 0.00 0.00 4.95
528 539 7.978099 AAATTCTTGCATCTTTATAGGGGTT 57.022 32.000 0.00 0.00 0.00 4.11
530 541 8.697507 AATTCTTGCATCTTTATAGGGGTTAG 57.302 34.615 0.00 0.00 0.00 2.34
531 542 6.824958 TCTTGCATCTTTATAGGGGTTAGT 57.175 37.500 0.00 0.00 0.00 2.24
537 548 6.408206 GCATCTTTATAGGGGTTAGTCTGTGT 60.408 42.308 0.00 0.00 0.00 3.72
545 556 3.007614 GGGGTTAGTCTGTGTGTATGTGT 59.992 47.826 0.00 0.00 0.00 3.72
573 584 1.305201 GAGTTTTCAACAGCACCGGA 58.695 50.000 9.46 0.00 0.00 5.14
655 666 4.033587 ACACACACACACGACATCTTTTAC 59.966 41.667 0.00 0.00 0.00 2.01
800 811 2.488153 ACTTATCCACCGCTTTGCTTTC 59.512 45.455 0.00 0.00 0.00 2.62
858 869 2.680352 TCAGCTCACGGGTCCCTC 60.680 66.667 6.29 0.00 0.00 4.30
859 870 2.681778 CAGCTCACGGGTCCCTCT 60.682 66.667 6.29 0.00 0.00 3.69
860 871 2.363147 AGCTCACGGGTCCCTCTC 60.363 66.667 6.29 0.00 0.00 3.20
861 872 3.827898 GCTCACGGGTCCCTCTCG 61.828 72.222 6.29 0.00 46.72 4.04
897 912 6.040166 TCGTAGTTCACTTCTCTTTTACCACT 59.960 38.462 0.00 0.00 0.00 4.00
964 993 1.724429 CTCAGCTCAGAGTGAAAGCC 58.276 55.000 0.00 0.00 36.69 4.35
993 1022 1.063469 AGCGTTTTCGTCTGTGTTTGG 59.937 47.619 0.00 0.00 46.03 3.28
1006 1035 4.946772 TCTGTGTTTGGTTGTTGATGAGAA 59.053 37.500 0.00 0.00 0.00 2.87
1113 1151 1.733402 CTCAGCCTGCTAGCGCTAGT 61.733 60.000 37.37 20.24 38.01 2.57
1122 1160 1.268352 GCTAGCGCTAGTGCTATGTCT 59.732 52.381 37.37 13.63 45.79 3.41
1313 1351 1.911357 TCTGTGCATCATGGAAGGTCT 59.089 47.619 0.00 0.00 0.00 3.85
1503 1551 1.529010 CCAGCAGCAGGACCAACAA 60.529 57.895 0.00 0.00 0.00 2.83
1530 1578 2.284190 GAGGCAAGCAGAATCTACCAC 58.716 52.381 0.00 0.00 0.00 4.16
1537 1585 2.171448 AGCAGAATCTACCACCACCATC 59.829 50.000 0.00 0.00 0.00 3.51
1538 1586 2.092968 GCAGAATCTACCACCACCATCA 60.093 50.000 0.00 0.00 0.00 3.07
1539 1587 3.622206 GCAGAATCTACCACCACCATCAA 60.622 47.826 0.00 0.00 0.00 2.57
1540 1588 3.941483 CAGAATCTACCACCACCATCAAC 59.059 47.826 0.00 0.00 0.00 3.18
1541 1589 3.587061 AGAATCTACCACCACCATCAACA 59.413 43.478 0.00 0.00 0.00 3.33
1542 1590 3.634397 ATCTACCACCACCATCAACAG 57.366 47.619 0.00 0.00 0.00 3.16
1543 1591 1.003118 TCTACCACCACCATCAACAGC 59.997 52.381 0.00 0.00 0.00 4.40
1544 1592 0.767998 TACCACCACCATCAACAGCA 59.232 50.000 0.00 0.00 0.00 4.41
1545 1593 0.538057 ACCACCACCATCAACAGCAG 60.538 55.000 0.00 0.00 0.00 4.24
1668 1716 1.153745 CCAGCTGGTGACGAGCTAC 60.154 63.158 25.53 0.00 41.02 3.58
1839 1893 0.394352 GTAATGGTGGTGGGGAGCAG 60.394 60.000 0.00 0.00 0.00 4.24
1840 1894 1.570857 TAATGGTGGTGGGGAGCAGG 61.571 60.000 0.00 0.00 0.00 4.85
1841 1895 3.889525 ATGGTGGTGGGGAGCAGGA 62.890 63.158 0.00 0.00 0.00 3.86
1842 1896 3.721706 GGTGGTGGGGAGCAGGAG 61.722 72.222 0.00 0.00 0.00 3.69
1843 1897 4.416738 GTGGTGGGGAGCAGGAGC 62.417 72.222 0.00 0.00 42.56 4.70
1844 1898 4.980592 TGGTGGGGAGCAGGAGCA 62.981 66.667 0.00 0.00 45.49 4.26
2022 2076 6.922247 ATGATCTCAACTTGCTCAATAGTG 57.078 37.500 0.00 0.00 0.00 2.74
2024 2078 4.277515 TCTCAACTTGCTCAATAGTGCT 57.722 40.909 0.00 0.00 35.37 4.40
2025 2079 5.405935 TCTCAACTTGCTCAATAGTGCTA 57.594 39.130 0.00 0.00 35.37 3.49
2026 2080 5.171476 TCTCAACTTGCTCAATAGTGCTAC 58.829 41.667 0.00 0.00 35.37 3.58
2027 2081 4.253685 TCAACTTGCTCAATAGTGCTACC 58.746 43.478 0.00 0.00 35.37 3.18
2028 2082 3.981071 ACTTGCTCAATAGTGCTACCA 57.019 42.857 0.00 0.00 35.37 3.25
2029 2083 4.494091 ACTTGCTCAATAGTGCTACCAT 57.506 40.909 0.00 0.00 35.37 3.55
2030 2084 4.446371 ACTTGCTCAATAGTGCTACCATC 58.554 43.478 0.00 0.00 35.37 3.51
2031 2085 4.163078 ACTTGCTCAATAGTGCTACCATCT 59.837 41.667 0.00 0.00 35.37 2.90
2032 2086 4.760530 TGCTCAATAGTGCTACCATCTT 57.239 40.909 0.00 0.00 35.37 2.40
2033 2087 5.102953 TGCTCAATAGTGCTACCATCTTT 57.897 39.130 0.00 0.00 35.37 2.52
2034 2088 5.500234 TGCTCAATAGTGCTACCATCTTTT 58.500 37.500 0.00 0.00 35.37 2.27
2035 2089 5.355071 TGCTCAATAGTGCTACCATCTTTTG 59.645 40.000 0.00 0.00 35.37 2.44
2036 2090 5.731686 GCTCAATAGTGCTACCATCTTTTGC 60.732 44.000 0.00 0.00 0.00 3.68
2037 2091 5.252547 TCAATAGTGCTACCATCTTTTGCA 58.747 37.500 0.00 0.00 0.00 4.08
2038 2092 5.709631 TCAATAGTGCTACCATCTTTTGCAA 59.290 36.000 0.00 0.00 35.34 4.08
2039 2093 5.824904 ATAGTGCTACCATCTTTTGCAAG 57.175 39.130 0.00 0.00 35.34 4.01
2040 2094 3.490348 AGTGCTACCATCTTTTGCAAGT 58.510 40.909 0.00 0.00 35.34 3.16
2041 2095 3.891366 AGTGCTACCATCTTTTGCAAGTT 59.109 39.130 0.00 0.00 35.34 2.66
2048 2117 7.486232 GCTACCATCTTTTGCAAGTTCTATTTC 59.514 37.037 0.00 0.00 0.00 2.17
2149 2223 5.488262 AAATTCCTGGTTCATTTGGAAGG 57.512 39.130 0.00 0.00 41.20 3.46
2150 2224 3.893753 TTCCTGGTTCATTTGGAAGGA 57.106 42.857 0.00 0.00 35.82 3.36
2151 2225 3.893753 TCCTGGTTCATTTGGAAGGAA 57.106 42.857 0.00 0.00 35.82 3.36
2152 2226 4.402616 TCCTGGTTCATTTGGAAGGAAT 57.597 40.909 0.00 0.00 35.82 3.01
2153 2227 5.528600 TCCTGGTTCATTTGGAAGGAATA 57.471 39.130 0.00 0.00 35.82 1.75
2154 2228 6.091076 TCCTGGTTCATTTGGAAGGAATAT 57.909 37.500 0.00 0.00 35.82 1.28
2155 2229 5.893255 TCCTGGTTCATTTGGAAGGAATATG 59.107 40.000 0.00 0.00 35.82 1.78
2219 2295 2.790433 TGCCCTGTGATTTTGTCCTAC 58.210 47.619 0.00 0.00 0.00 3.18
2330 2406 6.349197 CCAAAACAAATTAATGCCATGGAACC 60.349 38.462 18.40 0.00 0.00 3.62
2360 2439 6.656632 TTTATTCACCCACAACATGCTTAA 57.343 33.333 0.00 0.00 0.00 1.85
2367 2446 5.177327 CACCCACAACATGCTTAATTTGTTC 59.823 40.000 0.00 0.00 29.65 3.18
2432 2511 5.745312 TCTGATGCCTCTTCAGTTCTTTA 57.255 39.130 8.81 0.00 41.13 1.85
2486 2565 5.841810 TGTTTTTGACCAAATCACCTGATC 58.158 37.500 0.00 0.00 36.92 2.92
2592 2671 1.349357 GGGAGATATGAAGCCCACCTC 59.651 57.143 0.00 0.00 40.39 3.85
2604 2683 1.302832 CCACCTCTGGGACAACAGC 60.303 63.158 0.00 0.00 38.70 4.40
2690 2769 9.037737 AGCACAAATTGTATCAAAATCATATGC 57.962 29.630 0.00 0.00 0.00 3.14
2691 2770 8.819015 GCACAAATTGTATCAAAATCATATGCA 58.181 29.630 0.00 0.00 0.00 3.96
2698 2777 8.680039 TGTATCAAAATCATATGCATGAGTCA 57.320 30.769 10.16 0.00 44.30 3.41
2700 2779 6.381481 TCAAAATCATATGCATGAGTCACC 57.619 37.500 10.16 0.00 44.30 4.02
2701 2780 6.124340 TCAAAATCATATGCATGAGTCACCT 58.876 36.000 10.16 0.00 44.30 4.00
2704 2783 5.563876 ATCATATGCATGAGTCACCTTCT 57.436 39.130 10.16 0.00 44.30 2.85
2705 2784 4.700700 TCATATGCATGAGTCACCTTCTG 58.299 43.478 10.16 0.00 36.22 3.02
2706 2785 4.406649 TCATATGCATGAGTCACCTTCTGA 59.593 41.667 10.16 0.00 36.22 3.27
2710 2790 6.676990 ATGCATGAGTCACCTTCTGATATA 57.323 37.500 0.00 0.00 0.00 0.86
2714 2794 6.644592 GCATGAGTCACCTTCTGATATAACTC 59.355 42.308 0.00 0.00 0.00 3.01
2717 2797 6.096987 TGAGTCACCTTCTGATATAACTCCAC 59.903 42.308 0.00 0.00 0.00 4.02
2720 2800 6.550108 GTCACCTTCTGATATAACTCCACCTA 59.450 42.308 0.00 0.00 0.00 3.08
2726 2806 9.838339 CTTCTGATATAACTCCACCTAACATTT 57.162 33.333 0.00 0.00 0.00 2.32
2761 2841 7.425577 TCTTCTTCTTGTGTATGTCAACATG 57.574 36.000 5.89 0.00 37.15 3.21
2877 2957 6.486993 GTGTCCTAGTTCCTGACATTTTCTTT 59.513 38.462 2.67 0.00 40.75 2.52
2990 3070 3.492102 ATTTCCCGGTATGGATGACAG 57.508 47.619 0.00 0.00 42.00 3.51
3018 3098 6.553100 TGGATTGGTTCATGGAAACTAAAACT 59.447 34.615 1.13 0.00 34.00 2.66
3038 3118 8.571461 AAAACTGTCGATATCGGTTTCTATAC 57.429 34.615 24.12 12.85 41.58 1.47
3178 3259 7.038017 AGTCATTTTTCTCCCACTCTAGATCAA 60.038 37.037 0.00 0.00 0.00 2.57
3216 3297 4.082274 TCAGCAATAAGTTTGTGATGCG 57.918 40.909 0.00 0.00 38.74 4.73
3337 3424 9.671279 TTGCATGAGAGAAAAGTCTGAATAATA 57.329 29.630 0.00 0.00 32.80 0.98
3482 3569 1.337071 ACGATCGACATATCCGCTTGT 59.663 47.619 24.34 0.00 0.00 3.16
3588 3680 3.513912 CAGGGGGTACTATTATCGATGCA 59.486 47.826 8.54 0.00 0.00 3.96
3614 3706 3.318886 TGCTAATTGTCGCGTCAAAGTA 58.681 40.909 21.74 12.62 0.00 2.24
3694 3787 0.537143 TGTGCGTTGCTTTGGGATCT 60.537 50.000 0.00 0.00 0.00 2.75
3695 3788 1.271108 TGTGCGTTGCTTTGGGATCTA 60.271 47.619 0.00 0.00 0.00 1.98
3736 3837 1.002366 GGAGTACATCTGCAACTGCG 58.998 55.000 0.00 0.00 45.83 5.18
3830 3934 3.512033 AAGCTATCGGTTGACTGTCTC 57.488 47.619 9.51 2.53 0.00 3.36
3905 4009 6.414079 CAATCAGATCGGAAATCGTACTTTG 58.586 40.000 0.00 0.00 40.32 2.77
3950 4054 4.223032 TCCTAATGAGTGAACAAGGAGGAC 59.777 45.833 0.00 0.00 0.00 3.85
3978 4082 4.921547 TCATCGATGACGTCTTCTAAAGG 58.078 43.478 23.99 13.74 40.69 3.11
3979 4083 3.777465 TCGATGACGTCTTCTAAAGGG 57.223 47.619 24.01 11.19 40.69 3.95
3980 4084 3.087031 TCGATGACGTCTTCTAAAGGGT 58.913 45.455 24.01 0.00 40.69 4.34
3981 4085 4.264253 TCGATGACGTCTTCTAAAGGGTA 58.736 43.478 24.01 0.00 40.69 3.69
3982 4086 4.095483 TCGATGACGTCTTCTAAAGGGTAC 59.905 45.833 24.01 0.84 40.69 3.34
3983 4087 4.142534 CGATGACGTCTTCTAAAGGGTACA 60.143 45.833 24.01 0.00 34.56 2.90
3984 4088 5.450137 CGATGACGTCTTCTAAAGGGTACAT 60.450 44.000 24.01 3.47 34.56 2.29
3985 4089 5.068234 TGACGTCTTCTAAAGGGTACATG 57.932 43.478 17.92 0.00 0.00 3.21
3986 4090 4.768448 TGACGTCTTCTAAAGGGTACATGA 59.232 41.667 17.92 0.00 0.00 3.07
3987 4091 5.244402 TGACGTCTTCTAAAGGGTACATGAA 59.756 40.000 17.92 0.00 0.00 2.57
4000 4127 9.758651 AAAGGGTACATGAAATCTTAACAAAAC 57.241 29.630 0.00 0.00 0.00 2.43
4173 4303 3.711842 CGAAGCGCGCAAGGTCAA 61.712 61.111 35.10 0.00 38.28 3.18
4175 4305 3.314388 GAAGCGCGCAAGGTCAAGG 62.314 63.158 35.10 0.00 38.28 3.61
4202 4332 3.663176 CAGCCAACCACGTGCCTG 61.663 66.667 10.91 9.06 0.00 4.85
4270 4400 2.125326 CGGCGTCTGGAGGATGGTA 61.125 63.158 0.00 0.00 0.00 3.25
4341 4471 1.684248 CCTTCAGAAGGGCTTCATGGG 60.684 57.143 20.53 0.00 45.27 4.00
4342 4472 0.323725 TTCAGAAGGGCTTCATGGGC 60.324 55.000 0.00 0.00 41.84 5.36
4343 4473 2.117156 CAGAAGGGCTTCATGGGCG 61.117 63.158 0.00 0.00 41.84 6.13
4344 4474 2.830370 GAAGGGCTTCATGGGCGG 60.830 66.667 0.00 0.00 39.31 6.13
4374 4504 2.191375 CTCGTCCCTGCATGGCAT 59.809 61.111 2.62 0.00 38.13 4.40
4375 4505 1.890979 CTCGTCCCTGCATGGCATC 60.891 63.158 2.62 0.00 38.13 3.91
4442 4578 3.010420 GGCAAGATCAACTACTCCAACC 58.990 50.000 0.00 0.00 0.00 3.77
4447 4583 0.971386 TCAACTACTCCAACCCGTCC 59.029 55.000 0.00 0.00 0.00 4.79
4679 4824 1.465354 GCTGCTCAAATCTTGCTGTCG 60.465 52.381 0.00 0.00 0.00 4.35
4692 4837 3.332493 CTGTCGCTGGCCATGTTGC 62.332 63.158 5.51 4.98 0.00 4.17
4707 4853 1.202592 TGTTGCGTAAACTGGAGCTGA 60.203 47.619 0.00 0.00 39.70 4.26
4708 4854 1.461127 GTTGCGTAAACTGGAGCTGAG 59.539 52.381 0.00 0.00 35.75 3.35
4739 4885 1.069022 CGGTTGCTCATTCCACTTGTG 60.069 52.381 0.00 0.00 0.00 3.33
4742 4888 3.374745 GTTGCTCATTCCACTTGTGTTG 58.625 45.455 0.00 0.00 0.00 3.33
4793 4939 1.405872 TCACGAAGGTGGTGTAGTGT 58.594 50.000 0.00 0.00 44.50 3.55
4810 4956 2.229784 AGTGTTAGTGGTAGTGGTACGC 59.770 50.000 0.00 0.00 40.45 4.42
4863 5009 4.093408 CCGAACTTGTAGCAGTACGTAGTA 59.907 45.833 1.81 0.00 45.11 1.82
4895 5042 8.211629 ACTTACTTTCTCTTGAGCCTCTTTTTA 58.788 33.333 0.00 0.00 0.00 1.52
4896 5043 9.225436 CTTACTTTCTCTTGAGCCTCTTTTTAT 57.775 33.333 0.00 0.00 0.00 1.40
4897 5044 7.446001 ACTTTCTCTTGAGCCTCTTTTTATG 57.554 36.000 0.00 0.00 0.00 1.90
4898 5045 5.886960 TTCTCTTGAGCCTCTTTTTATGC 57.113 39.130 0.00 0.00 0.00 3.14
4899 5046 4.910195 TCTCTTGAGCCTCTTTTTATGCA 58.090 39.130 0.00 0.00 0.00 3.96
4901 5048 5.948162 TCTCTTGAGCCTCTTTTTATGCAAT 59.052 36.000 0.00 0.00 0.00 3.56
4902 5049 6.094603 TCTCTTGAGCCTCTTTTTATGCAATC 59.905 38.462 0.00 0.00 0.00 2.67
4944 5092 2.882927 ATGCATGCATGGCTTACAAG 57.117 45.000 31.74 0.00 35.03 3.16
4945 5093 1.548081 TGCATGCATGGCTTACAAGT 58.452 45.000 27.34 0.00 0.00 3.16
4946 5094 1.894466 TGCATGCATGGCTTACAAGTT 59.106 42.857 27.34 0.00 0.00 2.66
4947 5095 3.087781 TGCATGCATGGCTTACAAGTTA 58.912 40.909 27.34 0.00 0.00 2.24
4948 5096 3.119531 TGCATGCATGGCTTACAAGTTAC 60.120 43.478 27.34 6.96 0.00 2.50
4971 5119 1.041447 AATGCATGGAAGGAGGCTGC 61.041 55.000 0.00 0.00 0.00 5.25
5023 5171 2.289945 GGGACTGAGCTGATGTGTCTTT 60.290 50.000 0.00 0.00 0.00 2.52
5024 5172 2.740981 GGACTGAGCTGATGTGTCTTTG 59.259 50.000 0.00 0.00 0.00 2.77
5033 5181 1.389106 GATGTGTCTTTGTCCGTACGC 59.611 52.381 10.49 0.00 0.00 4.42
5034 5182 0.386476 TGTGTCTTTGTCCGTACGCT 59.614 50.000 10.49 0.00 0.00 5.07
5035 5183 1.202440 TGTGTCTTTGTCCGTACGCTT 60.202 47.619 10.49 0.00 0.00 4.68
5036 5184 1.191647 GTGTCTTTGTCCGTACGCTTG 59.808 52.381 10.49 0.00 0.00 4.01
5037 5185 1.202440 TGTCTTTGTCCGTACGCTTGT 60.202 47.619 10.49 0.00 0.00 3.16
5038 5186 1.862827 GTCTTTGTCCGTACGCTTGTT 59.137 47.619 10.49 0.00 0.00 2.83
5039 5187 2.286025 GTCTTTGTCCGTACGCTTGTTT 59.714 45.455 10.49 0.00 0.00 2.83
5040 5188 2.937799 TCTTTGTCCGTACGCTTGTTTT 59.062 40.909 10.49 0.00 0.00 2.43
5126 5275 2.350484 CGACTAGTTCAGCGACACAAGA 60.350 50.000 0.00 0.00 0.00 3.02
5167 7031 1.674057 GCAGTGCTATCCCCGCTAT 59.326 57.895 8.18 0.00 0.00 2.97
5243 7129 4.697352 CAGGAGTGGACAGGTTTTTATCTG 59.303 45.833 0.00 0.00 37.07 2.90
5285 7174 3.853671 CGTTTATCCGTACGCTTGTTAGT 59.146 43.478 10.49 0.00 0.00 2.24
5518 7416 2.652530 GTCCTACGTTCCGGTGCA 59.347 61.111 0.00 0.00 0.00 4.57
5535 7433 1.001624 GCAAATCATTCCAAAGCGGC 58.998 50.000 0.00 0.00 33.14 6.53
5644 7542 2.945668 GACATGTAGGATCCAAAGTGGC 59.054 50.000 15.82 5.91 37.47 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.711547 AGGGGGAGATAACATAGTTGGC 59.288 50.000 0.00 0.00 0.00 4.52
1 2 5.388599 AAAGGGGGAGATAACATAGTTGG 57.611 43.478 0.00 0.00 0.00 3.77
4 5 9.406662 ACATAATAAAGGGGGAGATAACATAGT 57.593 33.333 0.00 0.00 0.00 2.12
13 14 8.611257 CCATGTAATACATAATAAAGGGGGAGA 58.389 37.037 5.49 0.00 36.53 3.71
14 15 7.834181 CCCATGTAATACATAATAAAGGGGGAG 59.166 40.741 13.02 0.00 36.53 4.30
15 16 7.521468 TCCCATGTAATACATAATAAAGGGGGA 59.479 37.037 18.44 17.05 36.53 4.81
16 17 7.704727 TCCCATGTAATACATAATAAAGGGGG 58.295 38.462 18.44 15.51 36.53 5.40
17 18 9.189156 CATCCCATGTAATACATAATAAAGGGG 57.811 37.037 18.44 16.05 36.53 4.79
18 19 9.753674 ACATCCCATGTAATACATAATAAAGGG 57.246 33.333 14.62 14.62 42.78 3.95
27 28 9.812347 ATCATTACAACATCCCATGTAATACAT 57.188 29.630 9.95 0.00 45.94 2.29
28 29 9.639563 AATCATTACAACATCCCATGTAATACA 57.360 29.630 9.95 0.00 45.94 2.29
29 30 9.897744 CAATCATTACAACATCCCATGTAATAC 57.102 33.333 9.95 0.00 45.94 1.89
30 31 8.575589 GCAATCATTACAACATCCCATGTAATA 58.424 33.333 9.95 2.35 45.94 0.98
32 33 6.183360 GGCAATCATTACAACATCCCATGTAA 60.183 38.462 1.36 1.36 44.07 2.41
33 34 5.301551 GGCAATCATTACAACATCCCATGTA 59.698 40.000 0.00 0.00 44.07 2.29
35 36 4.342951 AGGCAATCATTACAACATCCCATG 59.657 41.667 0.00 0.00 0.00 3.66
36 37 4.342951 CAGGCAATCATTACAACATCCCAT 59.657 41.667 0.00 0.00 0.00 4.00
37 38 3.700539 CAGGCAATCATTACAACATCCCA 59.299 43.478 0.00 0.00 0.00 4.37
38 39 3.953612 TCAGGCAATCATTACAACATCCC 59.046 43.478 0.00 0.00 0.00 3.85
39 40 4.641989 AGTCAGGCAATCATTACAACATCC 59.358 41.667 0.00 0.00 0.00 3.51
40 41 5.824904 AGTCAGGCAATCATTACAACATC 57.175 39.130 0.00 0.00 0.00 3.06
41 42 5.622914 GCAAGTCAGGCAATCATTACAACAT 60.623 40.000 0.00 0.00 0.00 2.71
42 43 4.321156 GCAAGTCAGGCAATCATTACAACA 60.321 41.667 0.00 0.00 0.00 3.33
43 44 4.168760 GCAAGTCAGGCAATCATTACAAC 58.831 43.478 0.00 0.00 0.00 3.32
44 45 3.119884 CGCAAGTCAGGCAATCATTACAA 60.120 43.478 0.00 0.00 0.00 2.41
45 46 2.419673 CGCAAGTCAGGCAATCATTACA 59.580 45.455 0.00 0.00 0.00 2.41
46 47 2.677836 TCGCAAGTCAGGCAATCATTAC 59.322 45.455 0.00 0.00 39.48 1.89
47 48 2.677836 GTCGCAAGTCAGGCAATCATTA 59.322 45.455 0.00 0.00 39.48 1.90
48 49 1.470098 GTCGCAAGTCAGGCAATCATT 59.530 47.619 0.00 0.00 39.48 2.57
49 50 1.089920 GTCGCAAGTCAGGCAATCAT 58.910 50.000 0.00 0.00 39.48 2.45
50 51 0.250252 TGTCGCAAGTCAGGCAATCA 60.250 50.000 0.00 0.00 39.48 2.57
51 52 1.089920 ATGTCGCAAGTCAGGCAATC 58.910 50.000 0.00 0.00 39.11 2.67
52 53 1.200716 CAATGTCGCAAGTCAGGCAAT 59.799 47.619 0.00 0.00 39.11 3.56
53 54 0.592637 CAATGTCGCAAGTCAGGCAA 59.407 50.000 0.00 0.00 39.11 4.52
54 55 1.855213 GCAATGTCGCAAGTCAGGCA 61.855 55.000 0.00 0.00 39.11 4.75
55 56 1.154150 GCAATGTCGCAAGTCAGGC 60.154 57.895 0.00 0.00 39.11 4.85
56 57 0.877071 AAGCAATGTCGCAAGTCAGG 59.123 50.000 0.00 0.00 39.11 3.86
57 58 2.031769 TGAAAGCAATGTCGCAAGTCAG 60.032 45.455 0.00 0.00 39.11 3.51
58 59 1.946081 TGAAAGCAATGTCGCAAGTCA 59.054 42.857 0.00 0.00 40.25 3.41
59 60 2.686558 TGAAAGCAATGTCGCAAGTC 57.313 45.000 0.00 0.00 39.48 3.01
60 61 3.648339 ATTGAAAGCAATGTCGCAAGT 57.352 38.095 0.00 0.00 42.91 3.16
69 70 3.189285 GCATAACCGCATTGAAAGCAAT 58.811 40.909 0.00 0.00 45.33 3.56
70 71 2.605030 GCATAACCGCATTGAAAGCAA 58.395 42.857 0.00 0.00 38.60 3.91
71 72 1.135141 GGCATAACCGCATTGAAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
72 73 1.134946 AGGCATAACCGCATTGAAAGC 59.865 47.619 0.00 0.00 46.52 3.51
73 74 2.684881 AGAGGCATAACCGCATTGAAAG 59.315 45.455 0.00 0.00 46.52 2.62
74 75 2.722094 AGAGGCATAACCGCATTGAAA 58.278 42.857 0.00 0.00 46.52 2.69
75 76 2.418368 AGAGGCATAACCGCATTGAA 57.582 45.000 0.00 0.00 46.52 2.69
76 77 3.118408 ACTTAGAGGCATAACCGCATTGA 60.118 43.478 0.00 0.00 46.52 2.57
77 78 3.206150 ACTTAGAGGCATAACCGCATTG 58.794 45.455 0.00 0.00 46.52 2.82
78 79 3.467803 GACTTAGAGGCATAACCGCATT 58.532 45.455 0.00 0.00 46.52 3.56
79 80 2.545952 CGACTTAGAGGCATAACCGCAT 60.546 50.000 0.00 0.00 46.52 4.73
80 81 1.202371 CGACTTAGAGGCATAACCGCA 60.202 52.381 0.00 0.00 46.52 5.69
81 82 1.202382 ACGACTTAGAGGCATAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
82 83 2.460918 CACGACTTAGAGGCATAACCG 58.539 52.381 0.00 0.00 46.52 4.44
83 84 2.202566 GCACGACTTAGAGGCATAACC 58.797 52.381 0.00 0.00 39.61 2.85
84 85 2.159085 AGGCACGACTTAGAGGCATAAC 60.159 50.000 0.00 0.00 0.00 1.89
85 86 2.100916 GAGGCACGACTTAGAGGCATAA 59.899 50.000 0.00 0.00 0.00 1.90
86 87 1.681793 GAGGCACGACTTAGAGGCATA 59.318 52.381 0.00 0.00 0.00 3.14
87 88 0.461961 GAGGCACGACTTAGAGGCAT 59.538 55.000 0.00 0.00 0.00 4.40
88 89 1.890894 GAGGCACGACTTAGAGGCA 59.109 57.895 0.00 0.00 0.00 4.75
89 90 1.226717 CGAGGCACGACTTAGAGGC 60.227 63.158 0.00 0.00 45.77 4.70
90 91 2.478989 TCGAGGCACGACTTAGAGG 58.521 57.895 2.07 0.00 46.45 3.69
100 101 3.916392 CTCCCACGTGTCGAGGCAC 62.916 68.421 15.65 0.00 36.35 5.01
101 102 3.680786 CTCCCACGTGTCGAGGCA 61.681 66.667 15.65 0.00 36.35 4.75
103 104 1.384989 ATAGCTCCCACGTGTCGAGG 61.385 60.000 23.66 14.89 37.35 4.63
104 105 1.264557 CTATAGCTCCCACGTGTCGAG 59.735 57.143 20.16 20.16 0.00 4.04
105 106 1.306148 CTATAGCTCCCACGTGTCGA 58.694 55.000 15.65 8.55 0.00 4.20
106 107 0.317938 GCTATAGCTCCCACGTGTCG 60.318 60.000 17.75 4.04 38.21 4.35
107 108 0.032267 GGCTATAGCTCCCACGTGTC 59.968 60.000 23.53 0.00 41.70 3.67
108 109 1.735376 CGGCTATAGCTCCCACGTGT 61.735 60.000 23.53 0.00 41.70 4.49
109 110 1.007271 CGGCTATAGCTCCCACGTG 60.007 63.158 23.53 9.08 41.70 4.49
110 111 2.857744 GCGGCTATAGCTCCCACGT 61.858 63.158 23.53 0.00 41.70 4.49
111 112 2.049063 GCGGCTATAGCTCCCACG 60.049 66.667 23.53 18.20 41.70 4.94
112 113 0.390472 GATGCGGCTATAGCTCCCAC 60.390 60.000 23.53 6.29 41.70 4.61
113 114 1.877576 CGATGCGGCTATAGCTCCCA 61.878 60.000 23.53 17.22 41.70 4.37
114 115 1.153745 CGATGCGGCTATAGCTCCC 60.154 63.158 23.53 12.57 41.70 4.30
115 116 0.179150 CTCGATGCGGCTATAGCTCC 60.179 60.000 23.53 14.86 41.70 4.70
116 117 0.179150 CCTCGATGCGGCTATAGCTC 60.179 60.000 23.53 15.77 41.70 4.09
117 118 1.599606 CCCTCGATGCGGCTATAGCT 61.600 60.000 23.53 4.19 41.70 3.32
118 119 1.153745 CCCTCGATGCGGCTATAGC 60.154 63.158 16.78 16.78 41.14 2.97
119 120 1.153745 GCCCTCGATGCGGCTATAG 60.154 63.158 10.26 0.00 42.21 1.31
120 121 2.970639 GCCCTCGATGCGGCTATA 59.029 61.111 10.26 0.00 42.21 1.31
127 128 1.429148 CCTTGTAACGCCCTCGATGC 61.429 60.000 0.00 0.00 39.41 3.91
128 129 0.108329 ACCTTGTAACGCCCTCGATG 60.108 55.000 0.00 0.00 39.41 3.84
129 130 0.175073 GACCTTGTAACGCCCTCGAT 59.825 55.000 0.00 0.00 39.41 3.59
130 131 1.180456 TGACCTTGTAACGCCCTCGA 61.180 55.000 0.00 0.00 39.41 4.04
131 132 0.108329 ATGACCTTGTAACGCCCTCG 60.108 55.000 0.00 0.00 42.43 4.63
132 133 1.653151 GATGACCTTGTAACGCCCTC 58.347 55.000 0.00 0.00 0.00 4.30
133 134 0.252197 GGATGACCTTGTAACGCCCT 59.748 55.000 0.00 0.00 0.00 5.19
134 135 1.087771 CGGATGACCTTGTAACGCCC 61.088 60.000 0.00 0.00 0.00 6.13
135 136 1.087771 CCGGATGACCTTGTAACGCC 61.088 60.000 0.00 0.00 0.00 5.68
136 137 1.702491 GCCGGATGACCTTGTAACGC 61.702 60.000 5.05 0.00 0.00 4.84
137 138 1.418342 CGCCGGATGACCTTGTAACG 61.418 60.000 5.05 0.00 0.00 3.18
138 139 1.087771 CCGCCGGATGACCTTGTAAC 61.088 60.000 5.05 0.00 0.00 2.50
139 140 1.219664 CCGCCGGATGACCTTGTAA 59.780 57.895 5.05 0.00 0.00 2.41
140 141 1.683025 TCCGCCGGATGACCTTGTA 60.683 57.895 5.05 0.00 0.00 2.41
141 142 3.000819 TCCGCCGGATGACCTTGT 61.001 61.111 5.05 0.00 0.00 3.16
142 143 2.511600 GTCCGCCGGATGACCTTG 60.512 66.667 10.04 0.00 32.73 3.61
143 144 4.143333 CGTCCGCCGGATGACCTT 62.143 66.667 20.68 0.00 40.94 3.50
145 146 3.652539 TTTCGTCCGCCGGATGACC 62.653 63.158 26.87 4.34 46.06 4.02
146 147 1.693083 CTTTTCGTCCGCCGGATGAC 61.693 60.000 26.87 9.93 46.06 3.06
147 148 1.447140 CTTTTCGTCCGCCGGATGA 60.447 57.895 23.63 23.63 44.91 2.92
148 149 3.089784 CTTTTCGTCCGCCGGATG 58.910 61.111 19.32 19.32 39.89 3.51
149 150 2.818274 GCTTTTCGTCCGCCGGAT 60.818 61.111 10.04 0.00 37.11 4.18
153 154 3.785499 GTCCGCTTTTCGTCCGCC 61.785 66.667 0.00 0.00 36.19 6.13
154 155 4.130281 CGTCCGCTTTTCGTCCGC 62.130 66.667 0.00 0.00 36.19 5.54
155 156 4.130281 GCGTCCGCTTTTCGTCCG 62.130 66.667 4.10 0.00 38.26 4.79
156 157 4.130281 CGCGTCCGCTTTTCGTCC 62.130 66.667 10.21 0.00 39.32 4.79
157 158 3.400590 ACGCGTCCGCTTTTCGTC 61.401 61.111 5.58 0.00 39.32 4.20
158 159 3.698463 CACGCGTCCGCTTTTCGT 61.698 61.111 9.86 0.00 39.32 3.85
159 160 3.609422 GACACGCGTCCGCTTTTCG 62.609 63.158 9.86 0.00 39.32 3.46
160 161 1.897398 ATGACACGCGTCCGCTTTTC 61.897 55.000 9.86 3.85 41.85 2.29
161 162 1.503818 AATGACACGCGTCCGCTTTT 61.504 50.000 9.86 0.00 41.85 2.27
162 163 1.503818 AAATGACACGCGTCCGCTTT 61.504 50.000 9.86 4.58 41.85 3.51
163 164 0.668096 TAAATGACACGCGTCCGCTT 60.668 50.000 9.86 1.77 41.85 4.68
164 165 0.668096 TTAAATGACACGCGTCCGCT 60.668 50.000 9.86 0.00 41.85 5.52
165 166 0.247145 CTTAAATGACACGCGTCCGC 60.247 55.000 9.86 1.48 41.85 5.54
166 167 1.058695 GACTTAAATGACACGCGTCCG 59.941 52.381 9.86 0.56 41.85 4.79
167 168 1.058695 CGACTTAAATGACACGCGTCC 59.941 52.381 9.86 4.75 41.85 4.79
168 169 1.058695 CCGACTTAAATGACACGCGTC 59.941 52.381 9.86 0.00 42.93 5.19
169 170 1.065358 CCGACTTAAATGACACGCGT 58.935 50.000 5.58 5.58 0.00 6.01
170 171 0.247145 GCCGACTTAAATGACACGCG 60.247 55.000 3.53 3.53 0.00 6.01
171 172 0.247145 CGCCGACTTAAATGACACGC 60.247 55.000 0.00 0.00 0.00 5.34
172 173 0.247145 GCGCCGACTTAAATGACACG 60.247 55.000 0.00 0.00 0.00 4.49
173 174 0.247145 CGCGCCGACTTAAATGACAC 60.247 55.000 0.00 0.00 0.00 3.67
174 175 0.668096 ACGCGCCGACTTAAATGACA 60.668 50.000 5.73 0.00 0.00 3.58
175 176 0.441145 AACGCGCCGACTTAAATGAC 59.559 50.000 5.73 0.00 0.00 3.06
176 177 0.440758 CAACGCGCCGACTTAAATGA 59.559 50.000 5.73 0.00 0.00 2.57
177 178 0.520412 CCAACGCGCCGACTTAAATG 60.520 55.000 5.73 0.00 0.00 2.32
178 179 0.671163 TCCAACGCGCCGACTTAAAT 60.671 50.000 5.73 0.00 0.00 1.40
179 180 1.300775 TCCAACGCGCCGACTTAAA 60.301 52.632 5.73 0.00 0.00 1.52
180 181 2.023223 GTCCAACGCGCCGACTTAA 61.023 57.895 5.73 0.00 0.00 1.85
181 182 2.431260 GTCCAACGCGCCGACTTA 60.431 61.111 5.73 0.00 0.00 2.24
188 189 2.827959 GAAACATCGGTCCAACGCGC 62.828 60.000 5.73 0.00 0.00 6.86
189 190 1.131826 GAAACATCGGTCCAACGCG 59.868 57.895 3.53 3.53 0.00 6.01
190 191 0.165944 CAGAAACATCGGTCCAACGC 59.834 55.000 0.00 0.00 0.00 4.84
191 192 1.459592 GACAGAAACATCGGTCCAACG 59.540 52.381 0.00 0.00 0.00 4.10
196 197 2.163818 TGTGGACAGAAACATCGGTC 57.836 50.000 1.23 1.23 34.78 4.79
197 198 2.218603 GTTGTGGACAGAAACATCGGT 58.781 47.619 0.00 0.00 0.00 4.69
198 199 1.194547 CGTTGTGGACAGAAACATCGG 59.805 52.381 0.00 0.00 36.39 4.18
199 200 2.131972 TCGTTGTGGACAGAAACATCG 58.868 47.619 0.00 0.00 39.61 3.84
200 201 4.213270 TGAATCGTTGTGGACAGAAACATC 59.787 41.667 0.00 0.00 0.00 3.06
201 202 4.133820 TGAATCGTTGTGGACAGAAACAT 58.866 39.130 0.00 0.00 0.00 2.71
202 203 3.536570 TGAATCGTTGTGGACAGAAACA 58.463 40.909 0.00 0.00 0.00 2.83
203 204 4.545823 TTGAATCGTTGTGGACAGAAAC 57.454 40.909 0.00 0.00 0.00 2.78
204 205 5.507149 CCATTTGAATCGTTGTGGACAGAAA 60.507 40.000 0.00 0.00 0.00 2.52
205 206 4.023279 CCATTTGAATCGTTGTGGACAGAA 60.023 41.667 0.00 0.00 0.00 3.02
206 207 3.501828 CCATTTGAATCGTTGTGGACAGA 59.498 43.478 0.00 0.00 0.00 3.41
207 208 3.501828 TCCATTTGAATCGTTGTGGACAG 59.498 43.478 0.00 0.00 31.24 3.51
208 209 3.481453 TCCATTTGAATCGTTGTGGACA 58.519 40.909 0.00 0.00 31.24 4.02
209 210 3.821841 GTCCATTTGAATCGTTGTGGAC 58.178 45.455 6.59 6.59 45.90 4.02
210 211 3.252215 GTGTCCATTTGAATCGTTGTGGA 59.748 43.478 0.00 0.00 33.63 4.02
211 212 3.564511 GTGTCCATTTGAATCGTTGTGG 58.435 45.455 0.00 0.00 0.00 4.17
212 213 3.225548 CGTGTCCATTTGAATCGTTGTG 58.774 45.455 0.00 0.00 0.00 3.33
213 214 2.875933 ACGTGTCCATTTGAATCGTTGT 59.124 40.909 0.00 0.00 33.04 3.32
214 215 3.225548 CACGTGTCCATTTGAATCGTTG 58.774 45.455 7.58 0.00 34.09 4.10
215 216 2.875933 ACACGTGTCCATTTGAATCGTT 59.124 40.909 17.22 0.00 34.09 3.85
216 217 2.489971 ACACGTGTCCATTTGAATCGT 58.510 42.857 17.22 0.00 35.80 3.73
217 218 3.536158 AACACGTGTCCATTTGAATCG 57.464 42.857 23.61 0.00 0.00 3.34
218 219 5.753744 TGTAAACACGTGTCCATTTGAATC 58.246 37.500 23.61 6.06 0.00 2.52
219 220 5.759506 TGTAAACACGTGTCCATTTGAAT 57.240 34.783 23.61 0.00 0.00 2.57
220 221 5.562506 TTGTAAACACGTGTCCATTTGAA 57.437 34.783 23.61 7.25 0.00 2.69
221 222 5.562506 TTTGTAAACACGTGTCCATTTGA 57.437 34.783 23.61 3.06 0.00 2.69
222 223 6.292061 CCATTTTGTAAACACGTGTCCATTTG 60.292 38.462 23.61 14.52 0.00 2.32
223 224 5.751028 CCATTTTGTAAACACGTGTCCATTT 59.249 36.000 23.61 14.91 0.00 2.32
224 225 5.285651 CCATTTTGTAAACACGTGTCCATT 58.714 37.500 23.61 15.29 0.00 3.16
225 226 4.261825 CCCATTTTGTAAACACGTGTCCAT 60.262 41.667 23.61 13.79 0.00 3.41
226 227 3.066900 CCCATTTTGTAAACACGTGTCCA 59.933 43.478 23.61 15.89 0.00 4.02
227 228 3.067040 ACCCATTTTGTAAACACGTGTCC 59.933 43.478 23.61 13.39 0.00 4.02
228 229 4.035909 AGACCCATTTTGTAAACACGTGTC 59.964 41.667 23.61 10.45 0.00 3.67
229 230 3.949113 AGACCCATTTTGTAAACACGTGT 59.051 39.130 17.22 17.22 0.00 4.49
230 231 4.561735 AGACCCATTTTGTAAACACGTG 57.438 40.909 15.48 15.48 0.00 4.49
231 232 4.211794 CGTAGACCCATTTTGTAAACACGT 59.788 41.667 0.00 0.00 0.00 4.49
232 233 4.704457 CGTAGACCCATTTTGTAAACACG 58.296 43.478 0.00 0.00 0.00 4.49
233 234 4.469552 GCGTAGACCCATTTTGTAAACAC 58.530 43.478 0.00 0.00 0.00 3.32
234 235 3.186817 CGCGTAGACCCATTTTGTAAACA 59.813 43.478 0.00 0.00 0.00 2.83
235 236 3.187022 ACGCGTAGACCCATTTTGTAAAC 59.813 43.478 11.67 0.00 0.00 2.01
236 237 3.401182 ACGCGTAGACCCATTTTGTAAA 58.599 40.909 11.67 0.00 0.00 2.01
237 238 3.042871 ACGCGTAGACCCATTTTGTAA 57.957 42.857 11.67 0.00 0.00 2.41
238 239 2.737783 CAACGCGTAGACCCATTTTGTA 59.262 45.455 14.46 0.00 0.00 2.41
239 240 1.533731 CAACGCGTAGACCCATTTTGT 59.466 47.619 14.46 0.00 0.00 2.83
240 241 1.135803 CCAACGCGTAGACCCATTTTG 60.136 52.381 14.46 2.13 0.00 2.44
241 242 1.161843 CCAACGCGTAGACCCATTTT 58.838 50.000 14.46 0.00 0.00 1.82
242 243 0.322322 TCCAACGCGTAGACCCATTT 59.678 50.000 14.46 0.00 0.00 2.32
243 244 0.108329 CTCCAACGCGTAGACCCATT 60.108 55.000 14.46 0.00 0.00 3.16
244 245 1.255667 ACTCCAACGCGTAGACCCAT 61.256 55.000 14.46 0.00 0.00 4.00
245 246 1.466025 AACTCCAACGCGTAGACCCA 61.466 55.000 14.46 0.00 0.00 4.51
246 247 1.012486 CAACTCCAACGCGTAGACCC 61.012 60.000 14.46 0.00 0.00 4.46
247 248 1.623973 GCAACTCCAACGCGTAGACC 61.624 60.000 14.46 0.00 0.00 3.85
248 249 0.666577 AGCAACTCCAACGCGTAGAC 60.667 55.000 14.46 0.64 0.00 2.59
249 250 0.388134 GAGCAACTCCAACGCGTAGA 60.388 55.000 14.46 12.31 0.00 2.59
250 251 1.674611 CGAGCAACTCCAACGCGTAG 61.675 60.000 14.46 9.46 0.00 3.51
251 252 1.731613 CGAGCAACTCCAACGCGTA 60.732 57.895 14.46 0.00 0.00 4.42
252 253 2.410638 TACGAGCAACTCCAACGCGT 62.411 55.000 5.58 5.58 42.38 6.01
253 254 1.674611 CTACGAGCAACTCCAACGCG 61.675 60.000 3.53 3.53 0.00 6.01
254 255 1.352156 CCTACGAGCAACTCCAACGC 61.352 60.000 0.00 0.00 0.00 4.84
255 256 0.038526 ACCTACGAGCAACTCCAACG 60.039 55.000 0.00 0.00 0.00 4.10
256 257 1.798813 CAACCTACGAGCAACTCCAAC 59.201 52.381 0.00 0.00 0.00 3.77
257 258 1.689813 TCAACCTACGAGCAACTCCAA 59.310 47.619 0.00 0.00 0.00 3.53
258 259 1.334160 TCAACCTACGAGCAACTCCA 58.666 50.000 0.00 0.00 0.00 3.86
259 260 2.029290 TCTTCAACCTACGAGCAACTCC 60.029 50.000 0.00 0.00 0.00 3.85
260 261 3.299340 TCTTCAACCTACGAGCAACTC 57.701 47.619 0.00 0.00 0.00 3.01
261 262 3.589988 CATCTTCAACCTACGAGCAACT 58.410 45.455 0.00 0.00 0.00 3.16
262 263 2.094417 GCATCTTCAACCTACGAGCAAC 59.906 50.000 0.00 0.00 0.00 4.17
263 264 2.346803 GCATCTTCAACCTACGAGCAA 58.653 47.619 0.00 0.00 0.00 3.91
264 265 1.405526 GGCATCTTCAACCTACGAGCA 60.406 52.381 0.00 0.00 0.00 4.26
265 266 1.291132 GGCATCTTCAACCTACGAGC 58.709 55.000 0.00 0.00 0.00 5.03
266 267 1.482593 AGGGCATCTTCAACCTACGAG 59.517 52.381 0.00 0.00 0.00 4.18
267 268 1.568504 AGGGCATCTTCAACCTACGA 58.431 50.000 0.00 0.00 0.00 3.43
268 269 2.403252 AAGGGCATCTTCAACCTACG 57.597 50.000 0.00 0.00 31.88 3.51
269 270 4.058817 CGATAAGGGCATCTTCAACCTAC 58.941 47.826 0.00 0.00 36.93 3.18
270 271 3.071023 CCGATAAGGGCATCTTCAACCTA 59.929 47.826 0.00 0.00 36.93 3.08
271 272 2.158755 CCGATAAGGGCATCTTCAACCT 60.159 50.000 0.00 0.00 36.93 3.50
272 273 2.158813 TCCGATAAGGGCATCTTCAACC 60.159 50.000 0.00 0.00 41.52 3.77
273 274 3.194005 TCCGATAAGGGCATCTTCAAC 57.806 47.619 0.00 0.00 41.52 3.18
274 275 4.346709 TGTATCCGATAAGGGCATCTTCAA 59.653 41.667 0.00 0.00 41.52 2.69
275 276 3.901222 TGTATCCGATAAGGGCATCTTCA 59.099 43.478 0.00 0.00 41.52 3.02
276 277 4.021016 AGTGTATCCGATAAGGGCATCTTC 60.021 45.833 0.00 0.00 41.52 2.87
277 278 3.904339 AGTGTATCCGATAAGGGCATCTT 59.096 43.478 0.00 0.00 41.52 2.40
278 279 3.511477 AGTGTATCCGATAAGGGCATCT 58.489 45.455 0.00 0.00 41.52 2.90
279 280 3.258372 TGAGTGTATCCGATAAGGGCATC 59.742 47.826 0.00 0.00 41.52 3.91
280 281 3.006967 GTGAGTGTATCCGATAAGGGCAT 59.993 47.826 0.00 0.00 41.52 4.40
281 282 2.364324 GTGAGTGTATCCGATAAGGGCA 59.636 50.000 0.00 0.00 41.52 5.36
282 283 2.288886 GGTGAGTGTATCCGATAAGGGC 60.289 54.545 0.00 0.00 41.52 5.19
283 284 3.005897 CAGGTGAGTGTATCCGATAAGGG 59.994 52.174 0.00 0.00 41.52 3.95
284 285 3.637229 ACAGGTGAGTGTATCCGATAAGG 59.363 47.826 0.00 0.00 42.97 2.69
285 286 4.920640 ACAGGTGAGTGTATCCGATAAG 57.079 45.455 0.00 0.00 0.00 1.73
289 290 1.471287 CGAACAGGTGAGTGTATCCGA 59.529 52.381 0.00 0.00 0.00 4.55
306 307 1.745232 GTGAGAGGAGAGAGAGCGAA 58.255 55.000 0.00 0.00 0.00 4.70
309 310 2.319136 TACGTGAGAGGAGAGAGAGC 57.681 55.000 0.00 0.00 0.00 4.09
383 384 2.887783 GCTGCCTAGACATAGTAGCTGA 59.112 50.000 0.00 0.00 35.78 4.26
393 394 2.052104 TAGCGCTGCTGCCTAGACA 61.052 57.895 22.90 0.00 40.10 3.41
407 408 1.135139 ACCTGTCATGCACTAGTAGCG 59.865 52.381 0.00 0.00 33.85 4.26
431 432 1.663695 CCTCTCCGTCTCACTCTCTC 58.336 60.000 0.00 0.00 0.00 3.20
443 444 0.463295 TACCGTCTAGTGCCTCTCCG 60.463 60.000 0.00 0.00 0.00 4.63
522 533 3.260884 CACATACACACAGACTAACCCCT 59.739 47.826 0.00 0.00 0.00 4.79
523 534 3.007614 ACACATACACACAGACTAACCCC 59.992 47.826 0.00 0.00 0.00 4.95
524 535 4.243270 GACACATACACACAGACTAACCC 58.757 47.826 0.00 0.00 0.00 4.11
525 536 3.918591 CGACACATACACACAGACTAACC 59.081 47.826 0.00 0.00 0.00 2.85
526 537 3.364023 GCGACACATACACACAGACTAAC 59.636 47.826 0.00 0.00 0.00 2.34
527 538 3.571571 GCGACACATACACACAGACTAA 58.428 45.455 0.00 0.00 0.00 2.24
528 539 2.094906 GGCGACACATACACACAGACTA 60.095 50.000 0.00 0.00 0.00 2.59
529 540 1.336887 GGCGACACATACACACAGACT 60.337 52.381 0.00 0.00 0.00 3.24
530 541 1.068474 GGCGACACATACACACAGAC 58.932 55.000 0.00 0.00 0.00 3.51
531 542 0.388006 CGGCGACACATACACACAGA 60.388 55.000 0.00 0.00 0.00 3.41
537 548 2.807470 CACGCGGCGACACATACA 60.807 61.111 30.94 0.00 0.00 2.29
545 556 1.883544 TTGAAAACTCACGCGGCGA 60.884 52.632 30.94 6.48 0.00 5.54
629 640 1.663643 GATGTCGTGTGTGTGTGTGTT 59.336 47.619 0.00 0.00 0.00 3.32
633 644 3.673746 AAAAGATGTCGTGTGTGTGTG 57.326 42.857 0.00 0.00 0.00 3.82
634 645 3.558418 GGTAAAAGATGTCGTGTGTGTGT 59.442 43.478 0.00 0.00 0.00 3.72
655 666 2.590821 GGGATCTGTGATTGGATTGGG 58.409 52.381 0.00 0.00 0.00 4.12
755 766 3.478274 CTCTCCTGAGCCCTGCCC 61.478 72.222 0.00 0.00 33.12 5.36
756 767 2.364842 TCTCTCCTGAGCCCTGCC 60.365 66.667 0.00 0.00 40.03 4.85
757 768 1.685421 ACTCTCTCCTGAGCCCTGC 60.685 63.158 0.00 0.00 40.03 4.85
758 769 1.329171 CCACTCTCTCCTGAGCCCTG 61.329 65.000 0.00 0.00 40.03 4.45
759 770 1.001503 CCACTCTCTCCTGAGCCCT 59.998 63.158 0.00 0.00 40.03 5.19
858 869 2.049475 CTACGAGGAAGACGGGCGAG 62.049 65.000 0.00 0.00 34.93 5.03
859 870 2.046023 TACGAGGAAGACGGGCGA 60.046 61.111 0.00 0.00 34.93 5.54
860 871 1.930908 AACTACGAGGAAGACGGGCG 61.931 60.000 0.00 0.00 34.93 6.13
861 872 0.179142 GAACTACGAGGAAGACGGGC 60.179 60.000 0.00 0.00 34.93 6.13
897 912 2.042464 GACATGGAGATGGAGGCAGTA 58.958 52.381 0.00 0.00 33.39 2.74
964 993 2.036933 GACGAAAACGCTTCTTGCTTG 58.963 47.619 0.00 0.00 40.11 4.01
993 1022 2.159517 GGCCATCGTTCTCATCAACAAC 60.160 50.000 0.00 0.00 0.00 3.32
1113 1151 1.208052 GTGGGAGAAGCAGACATAGCA 59.792 52.381 0.00 0.00 0.00 3.49
1122 1160 2.281484 GCGTTGGTGGGAGAAGCA 60.281 61.111 0.00 0.00 0.00 3.91
1293 1331 1.911357 AGACCTTCCATGATGCACAGA 59.089 47.619 0.00 0.00 0.00 3.41
1313 1351 1.139654 AGAGAAGTGCAACAGTGAGCA 59.860 47.619 10.22 10.22 41.43 4.26
1455 1494 3.179265 GTGACCGCGTCATGTCCG 61.179 66.667 4.92 0.00 44.63 4.79
1458 1497 1.214589 GTAGGTGACCGCGTCATGT 59.785 57.895 4.92 0.00 44.63 3.21
1461 1500 0.606130 TGTAGTAGGTGACCGCGTCA 60.606 55.000 4.92 6.31 40.50 4.35
1503 1551 1.130054 TTCTGCTTGCCTCCTGGTCT 61.130 55.000 0.00 0.00 35.27 3.85
1530 1578 1.880894 CTGCTGCTGTTGATGGTGG 59.119 57.895 0.00 0.00 0.00 4.61
1537 1585 2.255554 CTGCTGCTGCTGCTGTTG 59.744 61.111 27.67 13.98 39.81 3.33
1797 1851 2.362120 CCCTGGGAAGCAGCCAAG 60.362 66.667 7.01 0.00 0.00 3.61
1798 1852 2.858476 TCCCTGGGAAGCAGCCAA 60.858 61.111 14.48 0.00 0.00 4.52
1839 1893 4.329545 TTCCCCACGCACTGCTCC 62.330 66.667 0.00 0.00 0.00 4.70
1840 1894 2.731691 TTCTTCCCCACGCACTGCTC 62.732 60.000 0.00 0.00 0.00 4.26
1841 1895 2.738213 CTTCTTCCCCACGCACTGCT 62.738 60.000 0.00 0.00 0.00 4.24
1842 1896 2.281484 TTCTTCCCCACGCACTGC 60.281 61.111 0.00 0.00 0.00 4.40
1843 1897 0.671781 CTCTTCTTCCCCACGCACTG 60.672 60.000 0.00 0.00 0.00 3.66
1844 1898 1.674057 CTCTTCTTCCCCACGCACT 59.326 57.895 0.00 0.00 0.00 4.40
2022 2076 4.773323 AGAACTTGCAAAAGATGGTAGC 57.227 40.909 0.00 0.00 0.00 3.58
2024 2078 8.402798 TGAAATAGAACTTGCAAAAGATGGTA 57.597 30.769 0.00 0.00 0.00 3.25
2025 2079 7.288810 TGAAATAGAACTTGCAAAAGATGGT 57.711 32.000 0.00 0.00 0.00 3.55
2026 2080 8.030692 TGATGAAATAGAACTTGCAAAAGATGG 58.969 33.333 0.00 0.00 0.00 3.51
2027 2081 8.975410 TGATGAAATAGAACTTGCAAAAGATG 57.025 30.769 0.00 0.00 0.00 2.90
2029 2083 9.985730 AAATGATGAAATAGAACTTGCAAAAGA 57.014 25.926 0.00 0.00 0.00 2.52
2048 2117 7.253983 GCACAAGATCAGCAATGTAAAATGATG 60.254 37.037 0.00 0.00 34.39 3.07
2171 2247 7.321153 ACATAAGGCACAAACAGTAGTACTAG 58.679 38.462 1.87 0.63 0.00 2.57
2174 2250 6.796705 AACATAAGGCACAAACAGTAGTAC 57.203 37.500 0.00 0.00 0.00 2.73
2177 2253 5.402270 GCAAAACATAAGGCACAAACAGTAG 59.598 40.000 0.00 0.00 0.00 2.57
2179 2255 4.119136 GCAAAACATAAGGCACAAACAGT 58.881 39.130 0.00 0.00 0.00 3.55
2187 2263 1.617850 CACAGGGCAAAACATAAGGCA 59.382 47.619 0.00 0.00 0.00 4.75
2219 2295 3.335786 GCAGACATCAATGCTGCTAAG 57.664 47.619 21.57 0.00 45.59 2.18
2270 2346 6.587206 GGTACTAGGTGCCCTACTAAATAG 57.413 45.833 0.00 0.00 34.61 1.73
2298 2374 6.018669 TGGCATTAATTTGTTTTGGAACGAAC 60.019 34.615 0.00 0.00 40.90 3.95
2330 2406 6.489127 TGTTGTGGGTGAATAAATCTAACG 57.511 37.500 0.00 0.00 0.00 3.18
2367 2446 5.994250 TCAGTCTTTAATCTTGAGGGATGG 58.006 41.667 0.00 0.00 0.00 3.51
2432 2511 3.055094 GGTAGGTGGTGTCTCATCAATGT 60.055 47.826 0.00 0.00 0.00 2.71
2486 2565 2.302587 TAAAAAGGGAGGCAGGTTGG 57.697 50.000 0.00 0.00 0.00 3.77
2535 2614 2.154462 CTCCAGTGGATCAAACACACC 58.846 52.381 13.56 0.00 41.21 4.16
2592 2671 0.535780 TCTTGCAGCTGTTGTCCCAG 60.536 55.000 16.64 0.00 35.49 4.45
2604 2683 2.490165 CTGCCCATCCTTCTTGCAG 58.510 57.895 0.00 0.00 42.85 4.41
2688 2767 6.098838 AGTTATATCAGAAGGTGACTCATGCA 59.901 38.462 0.00 0.00 42.68 3.96
2689 2768 6.520272 AGTTATATCAGAAGGTGACTCATGC 58.480 40.000 0.00 0.00 42.68 4.06
2690 2769 7.151308 GGAGTTATATCAGAAGGTGACTCATG 58.849 42.308 0.00 0.00 42.68 3.07
2691 2770 6.841229 TGGAGTTATATCAGAAGGTGACTCAT 59.159 38.462 0.00 0.00 42.68 2.90
2693 2772 6.461788 GGTGGAGTTATATCAGAAGGTGACTC 60.462 46.154 0.00 0.00 42.68 3.36
2696 2775 5.529289 AGGTGGAGTTATATCAGAAGGTGA 58.471 41.667 0.00 0.00 40.38 4.02
2697 2776 5.878406 AGGTGGAGTTATATCAGAAGGTG 57.122 43.478 0.00 0.00 0.00 4.00
2698 2777 6.901300 TGTTAGGTGGAGTTATATCAGAAGGT 59.099 38.462 0.00 0.00 0.00 3.50
2700 2779 9.838339 AAATGTTAGGTGGAGTTATATCAGAAG 57.162 33.333 0.00 0.00 0.00 2.85
2710 2790 7.669722 ACATGTATCAAAATGTTAGGTGGAGTT 59.330 33.333 0.00 0.00 33.19 3.01
2714 2794 8.055279 AGAACATGTATCAAAATGTTAGGTGG 57.945 34.615 0.00 0.00 44.83 4.61
2726 2806 9.725019 ATACACAAGAAGAAGAACATGTATCAA 57.275 29.630 0.00 0.00 28.32 2.57
2761 2841 0.247736 AGACACCATTCGAGCCAGAC 59.752 55.000 0.00 0.00 0.00 3.51
2806 2886 6.866770 GCAAAGTACTCCGTATATATGAAGCA 59.133 38.462 3.36 0.00 0.00 3.91
2807 2887 7.062371 CAGCAAAGTACTCCGTATATATGAAGC 59.938 40.741 3.36 0.00 0.00 3.86
2819 2899 1.790387 GCTGCAGCAAAGTACTCCG 59.210 57.895 33.36 0.00 41.59 4.63
2877 2957 3.389983 GTCATAACCACCTAGCCCACATA 59.610 47.826 0.00 0.00 0.00 2.29
2990 3070 3.196254 AGTTTCCATGAACCAATCCATGC 59.804 43.478 0.00 0.00 38.95 4.06
3018 3098 6.484308 TCACAGTATAGAAACCGATATCGACA 59.516 38.462 26.32 4.92 43.02 4.35
3038 3118 5.065090 TGAAACTCAACACATCAGTTCACAG 59.935 40.000 0.00 0.00 29.85 3.66
3199 3280 5.121611 TCCTGTACGCATCACAAACTTATTG 59.878 40.000 0.00 0.00 0.00 1.90
3216 3297 1.153549 CCCGCTGCTTCTCCTGTAC 60.154 63.158 0.00 0.00 0.00 2.90
3337 3424 3.120199 CGTTGAGATTGTTTTCCGCTCAT 60.120 43.478 0.00 0.00 35.73 2.90
3528 3618 6.936900 AGCACTGAAAGCTTCTTTCACTTATA 59.063 34.615 15.58 0.00 39.87 0.98
3588 3680 3.517602 TGACGCGACAATTAGCATACTT 58.482 40.909 15.93 0.00 0.00 2.24
3605 3697 7.276658 ACATTCTCTAGCAAATCTACTTTGACG 59.723 37.037 2.05 0.00 45.96 4.35
3614 3706 8.410141 GTGTCTACTACATTCTCTAGCAAATCT 58.590 37.037 0.00 0.00 41.10 2.40
3694 3787 8.737168 TCCACGAGCTAAAGTTAGTTACTATA 57.263 34.615 0.00 0.00 35.54 1.31
3695 3788 7.338957 ACTCCACGAGCTAAAGTTAGTTACTAT 59.661 37.037 0.00 0.00 32.55 2.12
3736 3837 2.945080 TGATCAGGGAAGGATGCATC 57.055 50.000 18.81 18.81 0.00 3.91
3830 3934 1.200519 TCAGTCCAAGGGGGTATTCG 58.799 55.000 0.00 0.00 38.11 3.34
3905 4009 5.299531 GGAAACCAAGGTAGATTCCTATTGC 59.700 44.000 12.03 0.00 37.23 3.56
3950 4054 6.999956 AGAAGACGTCATCGATGATTAATG 57.000 37.500 29.53 18.60 39.30 1.90
3978 4082 9.836076 GTAGGTTTTGTTAAGATTTCATGTACC 57.164 33.333 0.00 0.00 0.00 3.34
3981 4085 9.349713 TCAGTAGGTTTTGTTAAGATTTCATGT 57.650 29.630 0.00 0.00 0.00 3.21
4000 4127 4.631813 GTGGCTGTACAAAGATTCAGTAGG 59.368 45.833 0.00 0.00 0.00 3.18
4153 4283 4.961511 ACCTTGCGCGCTTCGTCA 62.962 61.111 33.29 7.72 41.07 4.35
4178 4308 3.050275 GTGGTTGGCTGCCTCGAC 61.050 66.667 21.03 15.41 0.00 4.20
4226 4356 0.465097 CCTTCTTCGGCATGGCTGAT 60.465 55.000 18.09 0.00 43.86 2.90
4270 4400 1.003355 CTGCGGTGTTCCATGGAGT 60.003 57.895 15.53 0.00 0.00 3.85
4442 4578 3.391382 GGTCACCAGGGAGGACGG 61.391 72.222 0.00 0.00 41.22 4.79
4593 4729 1.001393 GAATTCGGCCCCCTCAACA 60.001 57.895 0.00 0.00 0.00 3.33
4679 4824 0.732538 GTTTACGCAACATGGCCAGC 60.733 55.000 13.05 8.30 35.18 4.85
4692 4837 4.175787 ACTAACTCAGCTCCAGTTTACG 57.824 45.455 11.91 5.48 35.63 3.18
4707 4853 0.886563 AGCAACCGACGCTACTAACT 59.113 50.000 0.00 0.00 38.15 2.24
4708 4854 1.266466 GAGCAACCGACGCTACTAAC 58.734 55.000 0.00 0.00 40.63 2.34
4739 4885 1.246737 CCTTGCCTTCCCAGCTCAAC 61.247 60.000 0.00 0.00 0.00 3.18
4742 4888 2.753446 GCCTTGCCTTCCCAGCTC 60.753 66.667 0.00 0.00 0.00 4.09
4793 4939 1.820519 CCTGCGTACCACTACCACTAA 59.179 52.381 0.00 0.00 0.00 2.24
4810 4956 2.170187 AGACTAATGCCTGCTTCTCCTG 59.830 50.000 0.00 0.00 0.00 3.86
4863 5009 7.912719 AGGCTCAAGAGAAAGTAAGTAAGAAT 58.087 34.615 0.32 0.00 0.00 2.40
4880 5027 6.205101 AGATTGCATAAAAAGAGGCTCAAG 57.795 37.500 18.26 0.00 0.00 3.02
4895 5042 4.736611 ATACATTCCCAGGAGATTGCAT 57.263 40.909 0.00 0.00 0.00 3.96
4896 5043 4.524802 AATACATTCCCAGGAGATTGCA 57.475 40.909 0.00 0.00 0.00 4.08
4897 5044 6.240894 TGATAATACATTCCCAGGAGATTGC 58.759 40.000 0.00 0.00 0.00 3.56
4898 5045 7.148120 GCATGATAATACATTCCCAGGAGATTG 60.148 40.741 0.00 0.00 0.00 2.67
4899 5046 6.888632 GCATGATAATACATTCCCAGGAGATT 59.111 38.462 0.00 0.00 0.00 2.40
4901 5048 5.310331 TGCATGATAATACATTCCCAGGAGA 59.690 40.000 0.00 0.00 0.00 3.71
4902 5049 5.563592 TGCATGATAATACATTCCCAGGAG 58.436 41.667 0.00 0.00 0.00 3.69
4932 5080 5.345741 GCATTGTTGTAACTTGTAAGCCATG 59.654 40.000 0.00 0.00 0.00 3.66
4942 5090 4.832266 TCCTTCCATGCATTGTTGTAACTT 59.168 37.500 0.00 0.00 0.00 2.66
4943 5091 4.406456 TCCTTCCATGCATTGTTGTAACT 58.594 39.130 0.00 0.00 0.00 2.24
4944 5092 4.380867 CCTCCTTCCATGCATTGTTGTAAC 60.381 45.833 0.00 0.00 0.00 2.50
4945 5093 3.763360 CCTCCTTCCATGCATTGTTGTAA 59.237 43.478 0.00 0.00 0.00 2.41
4946 5094 3.355378 CCTCCTTCCATGCATTGTTGTA 58.645 45.455 0.00 0.00 0.00 2.41
4947 5095 2.173519 CCTCCTTCCATGCATTGTTGT 58.826 47.619 0.00 0.00 0.00 3.32
4948 5096 1.134907 GCCTCCTTCCATGCATTGTTG 60.135 52.381 0.00 0.00 0.00 3.33
4971 5119 2.677914 ACCCTTTCACTTTTCTTGGGG 58.322 47.619 0.00 0.00 37.56 4.96
5066 5214 5.470098 CCTGTGAATCTGGAATAAATACCCG 59.530 44.000 0.00 0.00 37.33 5.28
5126 5275 3.836617 GGCTTACCCAACCTCCCT 58.163 61.111 0.00 0.00 0.00 4.20
5152 7016 0.969894 AGACATAGCGGGGATAGCAC 59.030 55.000 0.00 0.00 37.01 4.40
5167 7031 6.477033 GCAGATTCTTTAGCGAATTCTAGACA 59.523 38.462 3.52 0.00 33.96 3.41
5243 7129 2.785679 GAGCGTACCATTTGATTGCAC 58.214 47.619 0.00 0.00 0.00 4.57
5285 7174 3.537795 ACCTGTCCACTACTTGACCTA 57.462 47.619 0.00 0.00 0.00 3.08
5518 7416 0.173255 CGGCCGCTTTGGAATGATTT 59.827 50.000 14.67 0.00 42.00 2.17
5612 7510 2.715532 CTACATGTCATCCCGGGCCG 62.716 65.000 21.46 21.46 0.00 6.13
5613 7511 1.071471 CTACATGTCATCCCGGGCC 59.929 63.158 18.49 3.75 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.