Multiple sequence alignment - TraesCS4A01G059900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G059900 chr4A 100.000 6151 0 0 1 6151 56272076 56265926 0.000000e+00 11359.0
1 TraesCS4A01G059900 chr4A 90.667 375 28 7 2003 2370 557106830 557107204 5.540000e-135 492.0
2 TraesCS4A01G059900 chr4A 93.141 277 15 3 2553 2825 557107332 557107608 2.670000e-108 403.0
3 TraesCS4A01G059900 chr4A 94.444 54 3 0 1929 1982 25026399 25026452 3.950000e-12 84.2
4 TraesCS4A01G059900 chr4D 90.058 4496 253 94 385 4829 398913257 398908905 0.000000e+00 5648.0
5 TraesCS4A01G059900 chr4D 89.265 1183 73 22 4815 5982 398908851 398907708 0.000000e+00 1432.0
6 TraesCS4A01G059900 chr4D 92.201 359 19 4 4 360 398913699 398913348 3.310000e-137 499.0
7 TraesCS4A01G059900 chr4D 89.189 74 1 4 1937 2004 50885763 50885691 1.100000e-12 86.1
8 TraesCS4A01G059900 chr4D 87.013 77 7 2 1941 2015 1643631 1643556 3.950000e-12 84.2
9 TraesCS4A01G059900 chr4B 92.372 2858 141 37 2005 4829 491837118 491834305 0.000000e+00 3999.0
10 TraesCS4A01G059900 chr4B 86.866 1439 94 51 544 1940 491838505 491837120 0.000000e+00 1522.0
11 TraesCS4A01G059900 chr4B 85.913 575 56 18 4815 5382 491834251 491833695 1.910000e-164 590.0
12 TraesCS4A01G059900 chr4B 90.494 263 18 2 98 359 491839067 491838811 2.120000e-89 340.0
13 TraesCS4A01G059900 chr4B 85.401 274 22 8 5380 5636 491833592 491833320 1.020000e-67 268.0
14 TraesCS4A01G059900 chr4B 84.795 171 18 5 5731 5899 491833324 491833160 1.370000e-36 165.0
15 TraesCS4A01G059900 chr4B 86.957 69 7 1 1941 2007 2211768 2211700 6.610000e-10 76.8
16 TraesCS4A01G059900 chr4B 86.957 69 7 1 1941 2007 2241741 2241673 6.610000e-10 76.8
17 TraesCS4A01G059900 chr3A 89.562 479 35 11 2005 2478 411272675 411272207 1.480000e-165 593.0
18 TraesCS4A01G059900 chr3A 90.933 375 27 7 2003 2370 193871996 193871622 1.190000e-136 497.0
19 TraesCS4A01G059900 chr3A 90.331 362 20 7 2553 2899 193871494 193871133 1.560000e-125 460.0
20 TraesCS4A01G059900 chr3A 86.364 352 14 9 2562 2899 411272188 411271857 2.730000e-93 353.0
21 TraesCS4A01G059900 chr3A 94.690 113 6 0 6039 6151 614232474 614232586 6.340000e-40 176.0
22 TraesCS4A01G059900 chr3A 90.000 100 8 2 5638 5735 32562982 32562883 1.800000e-25 128.0
23 TraesCS4A01G059900 chr3A 90.000 100 8 2 5638 5735 32608374 32608275 1.800000e-25 128.0
24 TraesCS4A01G059900 chr3A 89.216 102 9 2 5638 5738 36477672 36477572 6.470000e-25 126.0
25 TraesCS4A01G059900 chr3A 100.000 42 0 0 5982 6023 614232442 614232483 1.840000e-10 78.7
26 TraesCS4A01G059900 chr5A 91.200 375 26 7 2003 2370 510197888 510198262 2.560000e-138 503.0
27 TraesCS4A01G059900 chr5A 90.608 362 19 7 2553 2899 510198390 510198751 3.360000e-127 466.0
28 TraesCS4A01G059900 chr5A 92.308 169 8 2 5983 6151 600355852 600355689 1.030000e-57 235.0
29 TraesCS4A01G059900 chr5A 90.909 99 8 1 5632 5729 75022597 75022695 1.390000e-26 132.0
30 TraesCS4A01G059900 chr6D 89.796 392 26 10 2005 2393 79969687 79970067 1.990000e-134 490.0
31 TraesCS4A01G059900 chr6D 95.367 259 9 2 2562 2817 79970198 79970456 5.740000e-110 409.0
32 TraesCS4A01G059900 chr6D 97.619 168 4 0 5984 6151 365734383 365734216 7.800000e-74 289.0
33 TraesCS4A01G059900 chr6D 89.286 84 5 4 2398 2478 79970097 79970179 1.090000e-17 102.0
34 TraesCS4A01G059900 chr5B 85.685 482 42 15 2005 2478 397293479 397293017 3.330000e-132 483.0
35 TraesCS4A01G059900 chr5B 89.503 362 23 7 2553 2899 397292988 397292627 1.570000e-120 444.0
36 TraesCS4A01G059900 chr5B 88.158 76 6 2 2553 2625 397292599 397292524 3.050000e-13 87.9
37 TraesCS4A01G059900 chr2A 96.629 178 5 1 5974 6151 277609093 277608917 1.680000e-75 294.0
38 TraesCS4A01G059900 chr2A 92.571 175 6 3 5978 6151 32942976 32943144 1.710000e-60 244.0
39 TraesCS4A01G059900 chr1D 96.471 170 6 0 5982 6151 224396762 224396931 1.310000e-71 281.0
40 TraesCS4A01G059900 chr5D 96.450 169 6 0 5983 6151 46088269 46088437 4.700000e-71 279.0
41 TraesCS4A01G059900 chr1A 97.101 138 4 0 6014 6151 219383324 219383461 3.710000e-57 233.0
42 TraesCS4A01G059900 chr2D 92.784 97 6 1 5632 5727 22200876 22200972 8.310000e-29 139.0
43 TraesCS4A01G059900 chr2D 88.525 61 4 1 1941 1998 434358156 434358216 3.080000e-08 71.3
44 TraesCS4A01G059900 chr7A 91.919 99 7 1 5632 5729 288053431 288053529 2.990000e-28 137.0
45 TraesCS4A01G059900 chr2B 90.909 99 8 1 5632 5729 796458631 796458729 1.390000e-26 132.0
46 TraesCS4A01G059900 chr2B 88.525 61 4 3 1941 1998 513282986 513283046 3.080000e-08 71.3
47 TraesCS4A01G059900 chrUn 88.679 106 10 2 5632 5735 32482684 32482789 1.800000e-25 128.0
48 TraesCS4A01G059900 chr7D 88.158 76 6 2 1937 2012 613451450 613451522 3.050000e-13 87.9
49 TraesCS4A01G059900 chr7D 80.000 90 13 4 1941 2029 613451514 613451429 1.850000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G059900 chr4A 56265926 56272076 6150 True 11359.000000 11359 100.000000 1 6151 1 chr4A.!!$R1 6150
1 TraesCS4A01G059900 chr4A 557106830 557107608 778 False 447.500000 492 91.904000 2003 2825 2 chr4A.!!$F2 822
2 TraesCS4A01G059900 chr4D 398907708 398913699 5991 True 2526.333333 5648 90.508000 4 5982 3 chr4D.!!$R3 5978
3 TraesCS4A01G059900 chr4B 491833160 491839067 5907 True 1147.333333 3999 87.640167 98 5899 6 chr4B.!!$R3 5801
4 TraesCS4A01G059900 chr3A 193871133 193871996 863 True 478.500000 497 90.632000 2003 2899 2 chr3A.!!$R4 896
5 TraesCS4A01G059900 chr3A 411271857 411272675 818 True 473.000000 593 87.963000 2005 2899 2 chr3A.!!$R5 894
6 TraesCS4A01G059900 chr5A 510197888 510198751 863 False 484.500000 503 90.904000 2003 2899 2 chr5A.!!$F2 896
7 TraesCS4A01G059900 chr6D 79969687 79970456 769 False 333.666667 490 91.483000 2005 2817 3 chr6D.!!$F1 812
8 TraesCS4A01G059900 chr5B 397292524 397293479 955 True 338.300000 483 87.782000 2005 2899 3 chr5B.!!$R1 894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 566 0.031721 GACCCATGATACGGACCGTC 59.968 60.000 25.58 11.09 41.54 4.79 F
682 814 0.678048 AAAATCCAGCGAGGTCAGCC 60.678 55.000 0.00 0.00 39.02 4.85 F
744 876 1.152830 GAGAGCGATCTCCCTCCCT 59.847 63.158 19.92 0.00 40.22 4.20 F
1660 1817 1.067364 TGTGATTTGTTGCAGCACCTG 59.933 47.619 1.37 0.00 34.12 4.00 F
2699 2932 0.407528 AGAGAGACCTGACAGAGCCA 59.592 55.000 3.32 0.00 0.00 4.75 F
2894 3139 0.233848 GTGTCCTTGGTTACGCGTTG 59.766 55.000 20.78 0.93 0.00 4.10 F
4209 4454 0.318441 CTGCGGAAGGTCAGTCTTCA 59.682 55.000 6.88 0.00 43.52 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1645 0.183492 TGACAGAGCAGTTGCCCTTT 59.817 50.0 0.00 0.00 43.38 3.11 R
1598 1755 0.250234 CCCAGATCAAGAGCCGTCAA 59.750 55.0 0.00 0.00 0.00 3.18 R
2196 2381 0.397941 TCTCTGTTGGAGCAGGTTGG 59.602 55.0 0.00 0.00 41.60 3.77 R
2888 3133 0.871722 TCCCATCTTTGAACAACGCG 59.128 50.0 3.53 3.53 0.00 6.01 R
4276 4527 0.039165 GCAACCGGCTGAAAAAGGAG 60.039 55.0 9.57 0.00 40.25 3.69 R
4642 4900 0.107848 CCATTCCTTCTTACCGCCGT 60.108 55.0 0.00 0.00 0.00 5.68 R
6059 6527 0.035439 ATAAGGTTGCCAGGTCCACG 60.035 55.0 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 2.437359 AGGCGAGATGCTTGTGCC 60.437 61.111 0.00 0.00 45.43 5.01
122 123 4.527157 GAGATGCTTGTGCCGCGC 62.527 66.667 0.00 0.00 38.71 6.86
241 242 3.496875 CTCTCCCTCGCGCATCCAG 62.497 68.421 8.75 0.00 0.00 3.86
249 250 2.310233 CGCGCATCCAGTATTCCCG 61.310 63.158 8.75 0.00 0.00 5.14
257 258 1.372997 CAGTATTCCCGCGGGATCG 60.373 63.158 45.44 27.15 44.74 3.69
279 280 5.696724 TCGGACATTGTTTCTTCTTCTTCTC 59.303 40.000 0.00 0.00 0.00 2.87
280 281 5.388890 CGGACATTGTTTCTTCTTCTTCTCG 60.389 44.000 0.00 0.00 0.00 4.04
281 282 5.467063 GGACATTGTTTCTTCTTCTTCTCGT 59.533 40.000 0.00 0.00 0.00 4.18
282 283 6.017852 GGACATTGTTTCTTCTTCTTCTCGTT 60.018 38.462 0.00 0.00 0.00 3.85
283 284 6.949449 ACATTGTTTCTTCTTCTTCTCGTTC 58.051 36.000 0.00 0.00 0.00 3.95
284 285 6.763610 ACATTGTTTCTTCTTCTTCTCGTTCT 59.236 34.615 0.00 0.00 0.00 3.01
285 286 6.589830 TTGTTTCTTCTTCTTCTCGTTCTG 57.410 37.500 0.00 0.00 0.00 3.02
380 398 2.146920 AGGGTGCTACTCCTACTCAC 57.853 55.000 0.00 0.00 0.00 3.51
381 399 1.641714 AGGGTGCTACTCCTACTCACT 59.358 52.381 0.00 0.00 0.00 3.41
383 401 3.117813 AGGGTGCTACTCCTACTCACTAG 60.118 52.174 0.00 0.00 0.00 2.57
390 408 4.587976 ACTCCTACTCACTAGCCTACAA 57.412 45.455 0.00 0.00 0.00 2.41
391 409 4.931914 ACTCCTACTCACTAGCCTACAAA 58.068 43.478 0.00 0.00 0.00 2.83
402 476 7.568349 TCACTAGCCTACAAATCTTCATTCAT 58.432 34.615 0.00 0.00 0.00 2.57
405 479 9.331282 ACTAGCCTACAAATCTTCATTCATAAC 57.669 33.333 0.00 0.00 0.00 1.89
408 482 8.897752 AGCCTACAAATCTTCATTCATAACTTC 58.102 33.333 0.00 0.00 0.00 3.01
418 492 8.456471 TCTTCATTCATAACTTCAAAGATGCAG 58.544 33.333 0.00 0.00 0.00 4.41
419 493 7.692460 TCATTCATAACTTCAAAGATGCAGT 57.308 32.000 0.00 0.00 34.32 4.40
421 495 5.885230 TCATAACTTCAAAGATGCAGTGG 57.115 39.130 0.00 0.00 33.14 4.00
425 499 7.446931 TCATAACTTCAAAGATGCAGTGGTTTA 59.553 33.333 0.00 0.00 33.14 2.01
426 500 5.438761 ACTTCAAAGATGCAGTGGTTTAC 57.561 39.130 0.00 0.00 31.53 2.01
456 531 0.743701 CAAGTCAGGCCAGCTGCTAG 60.744 60.000 8.66 0.00 40.92 3.42
465 540 3.721706 AGCTGCTAGGCACACCCC 61.722 66.667 0.00 0.00 36.11 4.95
491 566 0.031721 GACCCATGATACGGACCGTC 59.968 60.000 25.58 11.09 41.54 4.79
525 600 7.476540 TCGCCCTCATGTGTTACTATTATAT 57.523 36.000 0.00 0.00 0.00 0.86
526 601 8.584063 TCGCCCTCATGTGTTACTATTATATA 57.416 34.615 0.00 0.00 0.00 0.86
527 602 8.683615 TCGCCCTCATGTGTTACTATTATATAG 58.316 37.037 0.00 0.00 0.00 1.31
528 603 8.467598 CGCCCTCATGTGTTACTATTATATAGT 58.532 37.037 4.88 4.88 0.00 2.12
651 783 6.109359 AGAAGAACGAACATATTCCAAGAGG 58.891 40.000 0.00 0.00 0.00 3.69
675 807 5.567138 AAATACCAGAAAAATCCAGCGAG 57.433 39.130 0.00 0.00 0.00 5.03
676 808 1.826385 ACCAGAAAAATCCAGCGAGG 58.174 50.000 0.00 0.00 39.47 4.63
677 809 1.073923 ACCAGAAAAATCCAGCGAGGT 59.926 47.619 0.00 0.00 39.02 3.85
678 810 1.740025 CCAGAAAAATCCAGCGAGGTC 59.260 52.381 0.00 0.00 39.02 3.85
679 811 2.426522 CAGAAAAATCCAGCGAGGTCA 58.573 47.619 0.00 0.00 39.02 4.02
680 812 2.417933 CAGAAAAATCCAGCGAGGTCAG 59.582 50.000 0.00 0.00 39.02 3.51
681 813 1.131315 GAAAAATCCAGCGAGGTCAGC 59.869 52.381 0.00 0.00 39.02 4.26
682 814 0.678048 AAAATCCAGCGAGGTCAGCC 60.678 55.000 0.00 0.00 39.02 4.85
683 815 1.841302 AAATCCAGCGAGGTCAGCCA 61.841 55.000 0.00 0.00 39.02 4.75
684 816 2.249413 AATCCAGCGAGGTCAGCCAG 62.249 60.000 0.00 0.00 39.02 4.85
689 821 3.385384 CGAGGTCAGCCAGCCAGA 61.385 66.667 0.00 0.00 37.19 3.86
690 822 2.583520 GAGGTCAGCCAGCCAGAG 59.416 66.667 0.00 0.00 37.19 3.35
691 823 3.678951 GAGGTCAGCCAGCCAGAGC 62.679 68.421 4.32 4.32 37.19 4.09
716 848 2.125512 GCCAGCTACACGGACAGG 60.126 66.667 0.00 0.00 0.00 4.00
744 876 1.152830 GAGAGCGATCTCCCTCCCT 59.847 63.158 19.92 0.00 40.22 4.20
827 960 1.473278 GTCTCGTCTCTCGTCCCAATT 59.527 52.381 0.00 0.00 40.80 2.32
828 961 2.094649 GTCTCGTCTCTCGTCCCAATTT 60.095 50.000 0.00 0.00 40.80 1.82
836 969 1.674322 CGTCCCAATTTCACCGCCT 60.674 57.895 0.00 0.00 0.00 5.52
860 993 4.824515 CTCCCCCGCTCCGTCTCT 62.825 72.222 0.00 0.00 0.00 3.10
887 1020 2.818132 GCATCACCCTCTCTCCCG 59.182 66.667 0.00 0.00 0.00 5.14
896 1029 4.816984 TCTCTCCCGTCGCCCCTC 62.817 72.222 0.00 0.00 0.00 4.30
935 1068 3.956317 AAACCCAACGAACGCGCC 61.956 61.111 5.73 0.00 42.48 6.53
1270 1403 3.609409 GCTCGGAAAGGTGACATGTTTTC 60.609 47.826 10.87 10.87 0.00 2.29
1317 1450 2.125106 CGCTGGTTAGGCAGGGAC 60.125 66.667 0.00 0.00 33.87 4.46
1318 1451 2.660064 CGCTGGTTAGGCAGGGACT 61.660 63.158 0.00 0.00 43.88 3.85
1321 1454 1.280457 CTGGTTAGGCAGGGACTTCT 58.720 55.000 0.00 0.00 34.60 2.85
1336 1469 6.017026 CAGGGACTTCTTGTTTCTTTTAGACC 60.017 42.308 0.00 0.00 34.60 3.85
1361 1497 3.277142 ACTTGTGGTTCTCGTTCCTTT 57.723 42.857 0.00 0.00 0.00 3.11
1368 1504 4.334481 GTGGTTCTCGTTCCTTTCAAGAAA 59.666 41.667 0.00 0.00 0.00 2.52
1369 1505 5.008712 GTGGTTCTCGTTCCTTTCAAGAAAT 59.991 40.000 0.00 0.00 0.00 2.17
1371 1507 6.426937 TGGTTCTCGTTCCTTTCAAGAAATAG 59.573 38.462 0.00 0.00 0.00 1.73
1383 1519 7.094377 CCTTTCAAGAAATAGGACCGAATTTGA 60.094 37.037 11.29 4.48 0.00 2.69
1385 1521 7.377766 TCAAGAAATAGGACCGAATTTGAAG 57.622 36.000 11.29 3.34 0.00 3.02
1428 1578 4.599047 TTGAACGCAGGGATCAAAATTT 57.401 36.364 7.61 0.00 30.60 1.82
1438 1588 4.713321 AGGGATCAAAATTTCCACCATGAG 59.287 41.667 0.00 0.00 33.43 2.90
1441 1591 6.101997 GGATCAAAATTTCCACCATGAGTTC 58.898 40.000 0.00 0.00 31.99 3.01
1442 1592 5.467035 TCAAAATTTCCACCATGAGTTCC 57.533 39.130 0.00 0.00 0.00 3.62
1444 1594 3.541242 AATTTCCACCATGAGTTCCCA 57.459 42.857 0.00 0.00 0.00 4.37
1446 1596 1.741028 TTCCACCATGAGTTCCCAGA 58.259 50.000 0.00 0.00 0.00 3.86
1459 1609 5.488919 TGAGTTCCCAGAAAGGATCAAGTAT 59.511 40.000 0.00 0.00 41.22 2.12
1461 1611 7.130681 AGTTCCCAGAAAGGATCAAGTATAG 57.869 40.000 0.00 0.00 41.22 1.31
1463 1613 7.570607 AGTTCCCAGAAAGGATCAAGTATAGAT 59.429 37.037 0.00 0.00 41.22 1.98
1465 1615 9.447279 TTCCCAGAAAGGATCAAGTATAGATTA 57.553 33.333 0.00 0.00 41.22 1.75
1467 1617 9.883142 CCCAGAAAGGATCAAGTATAGATTATC 57.117 37.037 0.00 0.00 41.22 1.75
1495 1645 4.039245 AGAACAAACACCTCTCGATTCAGA 59.961 41.667 0.00 0.00 0.00 3.27
1496 1646 4.336889 ACAAACACCTCTCGATTCAGAA 57.663 40.909 0.00 0.00 0.00 3.02
1497 1647 4.703897 ACAAACACCTCTCGATTCAGAAA 58.296 39.130 0.00 0.00 0.00 2.52
1498 1648 4.752101 ACAAACACCTCTCGATTCAGAAAG 59.248 41.667 0.00 0.00 0.00 2.62
1516 1671 2.952714 GGGCAACTGCTCTGTCATT 58.047 52.632 1.06 0.00 38.82 2.57
1527 1682 2.735663 GCTCTGTCATTGCTATCATCGG 59.264 50.000 0.00 0.00 0.00 4.18
1549 1705 3.604875 TCCTAGCCACCTTTTCGTTAG 57.395 47.619 0.00 0.00 0.00 2.34
1620 1777 1.227089 CGGCTCTTGATCTGGGACG 60.227 63.158 0.37 0.37 0.00 4.79
1647 1804 5.104859 TGCATGCAGGGAATAATTGTGATTT 60.105 36.000 18.46 0.00 0.00 2.17
1654 1811 6.311935 CAGGGAATAATTGTGATTTGTTGCAG 59.688 38.462 0.00 0.00 0.00 4.41
1656 1813 5.638657 GGAATAATTGTGATTTGTTGCAGCA 59.361 36.000 0.00 0.00 0.00 4.41
1657 1814 6.401367 GGAATAATTGTGATTTGTTGCAGCAC 60.401 38.462 1.37 0.00 0.00 4.40
1659 1816 1.401761 TGTGATTTGTTGCAGCACCT 58.598 45.000 1.37 0.00 0.00 4.00
1660 1817 1.067364 TGTGATTTGTTGCAGCACCTG 59.933 47.619 1.37 0.00 34.12 4.00
1661 1818 1.337703 GTGATTTGTTGCAGCACCTGA 59.662 47.619 1.37 0.00 32.44 3.86
1662 1819 1.337703 TGATTTGTTGCAGCACCTGAC 59.662 47.619 1.37 0.00 32.44 3.51
1665 1825 4.374702 GTTGCAGCACCTGACGCG 62.375 66.667 3.53 3.53 32.44 6.01
1715 1877 4.522789 GTCTGTTATTTGTGTGTTGGGGAT 59.477 41.667 0.00 0.00 0.00 3.85
1746 1908 2.191128 ATGGTGCTGAGAAGGTGTTC 57.809 50.000 0.00 0.00 0.00 3.18
1768 1930 4.699735 TCCTTAAACGTCATGTCATGCAAT 59.300 37.500 8.03 0.00 0.00 3.56
1778 1940 7.073883 CGTCATGTCATGCAATTCTAAATAGG 58.926 38.462 8.03 0.00 0.00 2.57
1779 1941 7.365741 GTCATGTCATGCAATTCTAAATAGGG 58.634 38.462 8.03 0.00 0.00 3.53
1820 1989 6.425417 CCAAAAAGCCGTGGTACAAAATTTAT 59.575 34.615 0.00 0.00 44.16 1.40
1855 2024 3.181493 ACGCATCAATCAATTCCTGCTTC 60.181 43.478 0.00 0.00 0.00 3.86
1893 2069 2.039084 GCTTGGAGGGACAGAAAAGAGA 59.961 50.000 0.00 0.00 0.00 3.10
1894 2070 3.867984 GCTTGGAGGGACAGAAAAGAGAG 60.868 52.174 0.00 0.00 0.00 3.20
1895 2071 2.260822 TGGAGGGACAGAAAAGAGAGG 58.739 52.381 0.00 0.00 0.00 3.69
1898 2074 1.152271 AGGGACAGAAAAGAGAGGGGA 59.848 52.381 0.00 0.00 0.00 4.81
1902 2079 3.821600 GGACAGAAAAGAGAGGGGAAAAC 59.178 47.826 0.00 0.00 0.00 2.43
1911 2088 1.802337 GAGGGGAAAACAACGGTGGC 61.802 60.000 4.97 0.00 0.00 5.01
1949 2126 8.197439 CACAAGAAATTTGTTTTTACTCCCTCT 58.803 33.333 0.00 0.00 0.00 3.69
1966 2143 8.050316 ACTCCCTCTGATCCATATTAATTGTT 57.950 34.615 0.00 0.00 0.00 2.83
1967 2144 7.941238 ACTCCCTCTGATCCATATTAATTGTTG 59.059 37.037 0.00 0.00 0.00 3.33
1968 2145 6.716628 TCCCTCTGATCCATATTAATTGTTGC 59.283 38.462 0.00 0.00 0.00 4.17
1969 2146 6.718454 CCCTCTGATCCATATTAATTGTTGCT 59.282 38.462 0.00 0.00 0.00 3.91
1970 2147 7.309012 CCCTCTGATCCATATTAATTGTTGCTG 60.309 40.741 0.00 0.00 0.00 4.41
1972 2149 8.929260 TCTGATCCATATTAATTGTTGCTGAT 57.071 30.769 0.00 0.00 0.00 2.90
1973 2150 9.358406 TCTGATCCATATTAATTGTTGCTGATT 57.642 29.630 0.00 0.00 0.00 2.57
1974 2151 9.976511 CTGATCCATATTAATTGTTGCTGATTT 57.023 29.630 0.00 0.00 0.00 2.17
2138 2319 9.921637 CTGTAAATTACTCATAAAAGGGCAAAA 57.078 29.630 4.67 0.00 0.00 2.44
2139 2320 9.921637 TGTAAATTACTCATAAAAGGGCAAAAG 57.078 29.630 4.67 0.00 0.00 2.27
2142 2323 6.834168 TTACTCATAAAAGGGCAAAAGAGG 57.166 37.500 0.00 0.00 0.00 3.69
2143 2324 4.998051 ACTCATAAAAGGGCAAAAGAGGA 58.002 39.130 0.00 0.00 0.00 3.71
2167 2352 7.361713 GGAGGTCATCTGTATTATCTTCTCTCG 60.362 44.444 0.00 0.00 0.00 4.04
2176 2361 8.090250 TGTATTATCTTCTCTCGTTCTCTAGC 57.910 38.462 0.00 0.00 0.00 3.42
2188 2373 3.615155 GTTCTCTAGCCTTTTCCATGCT 58.385 45.455 0.00 0.00 39.10 3.79
2196 2381 2.275318 CCTTTTCCATGCTCTCTCGTC 58.725 52.381 0.00 0.00 0.00 4.20
2306 2491 1.671054 TGGCTTACAGCAACTCCGC 60.671 57.895 0.00 0.00 44.75 5.54
2319 2504 3.062639 GCAACTCCGCCAATGATATATCG 59.937 47.826 8.19 0.00 0.00 2.92
2349 2534 7.272037 AGGAAAATGTTGAACGAGTTATTGT 57.728 32.000 0.00 0.00 0.00 2.71
2389 2576 6.922247 TTTGTTCGTAATAACTCCACACAA 57.078 33.333 0.00 0.00 0.00 3.33
2468 2690 1.128200 TGTGTACCAGCCAAGAGTGT 58.872 50.000 0.00 0.00 0.00 3.55
2478 2700 5.045578 ACCAGCCAAGAGTGTTAAGATACAT 60.046 40.000 0.00 0.00 0.00 2.29
2484 2706 7.934120 GCCAAGAGTGTTAAGATACATATCCTT 59.066 37.037 0.00 0.00 33.17 3.36
2485 2707 9.265901 CCAAGAGTGTTAAGATACATATCCTTG 57.734 37.037 0.00 0.00 33.17 3.61
2506 2728 9.442062 TCCTTGTGAAAATACAGTATATCCCTA 57.558 33.333 0.00 0.00 0.00 3.53
2538 2760 1.203994 ACCGTGATGACCCTAGTTTCG 59.796 52.381 0.00 0.00 0.00 3.46
2661 2894 2.050918 TGTTGGTGACACAGGATGGTA 58.949 47.619 8.08 0.00 43.62 3.25
2699 2932 0.407528 AGAGAGACCTGACAGAGCCA 59.592 55.000 3.32 0.00 0.00 4.75
2714 2947 2.158696 AGAGCCAGATAGAATTGTGGGC 60.159 50.000 0.00 0.00 40.18 5.36
2776 3009 1.280998 GGGTCTGCAGGGTAAGCTTTA 59.719 52.381 15.13 0.00 0.00 1.85
2788 3022 3.055021 GGTAAGCTTTACTCCTCCTGCTT 60.055 47.826 3.20 0.00 42.36 3.91
2817 3051 4.018688 GGGTTTCCTAACAGAACCATAGGT 60.019 45.833 6.80 0.00 43.59 3.08
2888 3133 0.865769 CACAGCGTGTCCTTGGTTAC 59.134 55.000 1.24 0.00 0.00 2.50
2891 3136 3.152703 CGTGTCCTTGGTTACGCG 58.847 61.111 3.53 3.53 42.34 6.01
2894 3139 0.233848 GTGTCCTTGGTTACGCGTTG 59.766 55.000 20.78 0.93 0.00 4.10
2984 3229 2.293399 GAGCTTTCACAATGGACGGTTT 59.707 45.455 0.00 0.00 0.00 3.27
2987 3232 4.522789 AGCTTTCACAATGGACGGTTTATT 59.477 37.500 0.00 0.00 0.00 1.40
3005 3250 6.378582 GTTTATTCAGAGGATGCGTGAAAAA 58.621 36.000 8.68 8.09 34.02 1.94
3011 3256 1.067199 GGATGCGTGAAAAAGCTGCG 61.067 55.000 0.00 0.00 0.00 5.18
3014 3259 2.069277 GCGTGAAAAAGCTGCGTCG 61.069 57.895 0.00 0.00 0.00 5.12
3017 3262 1.071107 CGTGAAAAAGCTGCGTCGTTA 60.071 47.619 0.00 0.00 0.00 3.18
3035 3280 6.343703 GTCGTTACCCAAGTAATACCTCATT 58.656 40.000 0.00 0.00 40.50 2.57
3037 3282 5.007332 CGTTACCCAAGTAATACCTCATTGC 59.993 44.000 0.00 0.00 40.50 3.56
3107 3352 7.496346 AGTTTTCATCTGGTATCCTTCTACA 57.504 36.000 0.00 0.00 0.00 2.74
3147 3392 4.946157 CCCATAAGCTATGCCTTAGAATGG 59.054 45.833 0.00 0.00 35.76 3.16
3207 3452 4.415881 TCTGCTTGTGTGGAAGTTCTTA 57.584 40.909 2.25 0.00 0.00 2.10
3232 3477 4.439305 TTTGGTGTATTTGCTCTCATGC 57.561 40.909 0.00 0.00 0.00 4.06
3443 3688 7.158021 AGATCAAGTCAGGTGAAGAACTAAAG 58.842 38.462 0.00 0.00 0.00 1.85
3551 3796 8.641541 TCACATTATACTCACTGCTGATTATCA 58.358 33.333 0.00 0.00 0.00 2.15
3705 3950 4.415512 CCTTCTCCCATCCTATTTTACCCA 59.584 45.833 0.00 0.00 0.00 4.51
3822 4067 3.094572 GGTTGCACCTCAGGTACTACTA 58.905 50.000 8.38 0.00 32.85 1.82
3826 4071 6.461231 GGTTGCACCTCAGGTACTACTATAAG 60.461 46.154 8.38 0.00 32.85 1.73
3881 4126 7.665559 AGTGTAATTTCAACTGCCTGATTTCTA 59.334 33.333 0.00 0.00 0.00 2.10
4124 4369 2.563471 AGTCGTCCTGCGTAATCTTC 57.437 50.000 0.00 0.00 42.13 2.87
4205 4450 1.174783 TACTCTGCGGAAGGTCAGTC 58.825 55.000 0.00 0.00 0.00 3.51
4206 4451 0.540830 ACTCTGCGGAAGGTCAGTCT 60.541 55.000 0.00 0.00 0.00 3.24
4207 4452 0.605589 CTCTGCGGAAGGTCAGTCTT 59.394 55.000 0.00 0.00 0.00 3.01
4208 4453 0.603569 TCTGCGGAAGGTCAGTCTTC 59.396 55.000 0.00 0.00 41.64 2.87
4209 4454 0.318441 CTGCGGAAGGTCAGTCTTCA 59.682 55.000 6.88 0.00 43.52 3.02
4210 4455 0.756294 TGCGGAAGGTCAGTCTTCAA 59.244 50.000 6.88 0.00 43.52 2.69
4211 4456 1.149148 GCGGAAGGTCAGTCTTCAAC 58.851 55.000 6.88 0.00 43.52 3.18
4212 4457 1.270358 GCGGAAGGTCAGTCTTCAACT 60.270 52.381 6.88 0.00 43.52 3.16
4230 4475 9.283768 TCTTCAACTCTTCATATTGCAGTTTAA 57.716 29.630 0.00 0.00 0.00 1.52
4232 4477 9.844790 TTCAACTCTTCATATTGCAGTTTAATG 57.155 29.630 0.00 0.00 0.00 1.90
4234 4479 6.799512 ACTCTTCATATTGCAGTTTAATGCC 58.200 36.000 0.00 0.00 45.91 4.40
4235 4480 6.147864 TCTTCATATTGCAGTTTAATGCCC 57.852 37.500 0.00 0.00 45.91 5.36
4249 4494 1.538687 ATGCCCAGCTTTTCCAGTGC 61.539 55.000 0.00 0.00 0.00 4.40
4251 4496 1.747325 GCCCAGCTTTTCCAGTGCAA 61.747 55.000 0.00 0.00 0.00 4.08
4253 4498 2.170166 CCCAGCTTTTCCAGTGCAATA 58.830 47.619 0.00 0.00 0.00 1.90
4254 4499 2.094545 CCCAGCTTTTCCAGTGCAATAC 60.095 50.000 0.00 0.00 0.00 1.89
4256 4501 3.366679 CCAGCTTTTCCAGTGCAATACAG 60.367 47.826 0.00 0.00 0.00 2.74
4260 4511 4.681483 GCTTTTCCAGTGCAATACAGTTTC 59.319 41.667 0.00 0.00 0.00 2.78
4266 4517 7.759489 TCCAGTGCAATACAGTTTCTTTAAT 57.241 32.000 0.00 0.00 0.00 1.40
4270 4521 9.462174 CAGTGCAATACAGTTTCTTTAATTCAA 57.538 29.630 0.00 0.00 0.00 2.69
4395 4646 4.379394 CGCCAAGCTTGCTTTGATTACTTA 60.379 41.667 21.43 0.00 0.00 2.24
4509 4760 1.737793 GCTATCTTTGGTGTTGGACGG 59.262 52.381 0.00 0.00 0.00 4.79
4548 4799 3.048337 TCACCTAAACGAATGTGGACC 57.952 47.619 0.00 0.00 0.00 4.46
4583 4834 3.661745 CGGTAAGTCCCGGAATCTG 57.338 57.895 0.73 0.00 44.32 2.90
4646 4904 4.106029 TCAGTAGTAACATGAAGACGGC 57.894 45.455 0.00 0.00 0.00 5.68
4648 4906 2.159282 AGTAGTAACATGAAGACGGCGG 60.159 50.000 13.24 0.00 0.00 6.13
4650 4908 1.820519 AGTAACATGAAGACGGCGGTA 59.179 47.619 13.24 0.00 0.00 4.02
4671 4929 3.274095 AGAAGGAATGGAACTAGCTGC 57.726 47.619 0.00 0.00 0.00 5.25
4684 4942 6.595716 TGGAACTAGCTGCTTTCTATCTTTTC 59.404 38.462 7.79 0.00 0.00 2.29
4708 4966 3.615592 GCTCATTTGCATTTGCTCCAGAA 60.616 43.478 3.94 0.00 42.66 3.02
4712 4970 6.509656 TCATTTGCATTTGCTCCAGAATATC 58.490 36.000 3.94 0.00 42.66 1.63
4775 5033 0.603707 TTGGCTCTGCACTGCTACAC 60.604 55.000 1.98 0.00 0.00 2.90
4783 5041 1.651240 GCACTGCTACACCCATGCTG 61.651 60.000 0.00 0.00 0.00 4.41
4784 5042 0.321919 CACTGCTACACCCATGCTGT 60.322 55.000 0.00 0.00 38.94 4.40
4786 5044 0.806868 CTGCTACACCCATGCTGTTG 59.193 55.000 0.07 0.44 0.00 3.33
4787 5045 0.110295 TGCTACACCCATGCTGTTGT 59.890 50.000 0.07 0.00 0.00 3.32
4792 5051 1.830477 ACACCCATGCTGTTGTTTTGT 59.170 42.857 0.00 0.00 0.00 2.83
4812 5071 9.672086 GTTTTGTCATACTTGTTTGCATAACTA 57.328 29.630 11.34 5.12 0.00 2.24
4832 5159 6.770746 ACTACTGTATGTTAGTACCTGGTG 57.229 41.667 10.23 0.00 0.00 4.17
4835 5162 4.157289 ACTGTATGTTAGTACCTGGTGTCG 59.843 45.833 10.23 0.00 0.00 4.35
4836 5163 2.667473 ATGTTAGTACCTGGTGTCGC 57.333 50.000 10.23 0.00 0.00 5.19
4853 5180 0.454957 CGCGAAGTTTTGGCATCCAG 60.455 55.000 0.00 0.00 33.81 3.86
4864 5191 7.293073 AGTTTTGGCATCCAGTATATTCATCT 58.707 34.615 0.00 0.00 33.81 2.90
4881 5210 9.685276 ATATTCATCTTTTGAGTACATGGTTGA 57.315 29.630 0.00 0.00 35.27 3.18
4885 5214 4.104102 TCTTTTGAGTACATGGTTGAGGGT 59.896 41.667 0.00 0.00 0.00 4.34
4886 5215 3.417069 TTGAGTACATGGTTGAGGGTG 57.583 47.619 0.00 0.00 0.00 4.61
4889 5218 3.244422 TGAGTACATGGTTGAGGGTGAAC 60.244 47.826 0.00 0.00 0.00 3.18
4893 5222 1.203052 CATGGTTGAGGGTGAACATGC 59.797 52.381 0.00 0.00 0.00 4.06
4938 5267 6.542370 GCAAAATTTACTAGAGACTGGCCATA 59.458 38.462 5.51 0.00 0.00 2.74
4939 5268 7.467403 GCAAAATTTACTAGAGACTGGCCATAC 60.467 40.741 5.51 3.09 0.00 2.39
4940 5269 6.808321 AATTTACTAGAGACTGGCCATACA 57.192 37.500 5.51 0.00 0.00 2.29
4941 5270 5.854010 TTTACTAGAGACTGGCCATACAG 57.146 43.478 5.51 0.00 44.03 2.74
4942 5271 3.671740 ACTAGAGACTGGCCATACAGA 57.328 47.619 5.51 0.00 40.97 3.41
4944 5273 2.541233 AGAGACTGGCCATACAGAGT 57.459 50.000 5.51 0.00 40.97 3.24
4945 5274 3.671740 AGAGACTGGCCATACAGAGTA 57.328 47.619 5.51 0.00 40.97 2.59
4946 5275 4.191804 AGAGACTGGCCATACAGAGTAT 57.808 45.455 5.51 0.00 40.97 2.12
4947 5276 4.551671 AGAGACTGGCCATACAGAGTATT 58.448 43.478 5.51 0.00 40.97 1.89
4948 5277 4.343526 AGAGACTGGCCATACAGAGTATTG 59.656 45.833 5.51 0.00 40.97 1.90
4949 5278 3.389329 AGACTGGCCATACAGAGTATTGG 59.611 47.826 5.51 0.00 40.97 3.16
4955 5284 3.544684 CCATACAGAGTATTGGCAAGCA 58.455 45.455 5.96 0.00 0.00 3.91
4956 5285 3.313526 CCATACAGAGTATTGGCAAGCAC 59.686 47.826 5.96 6.36 0.00 4.40
4957 5286 2.566833 ACAGAGTATTGGCAAGCACA 57.433 45.000 5.96 0.00 0.00 4.57
4958 5287 3.077484 ACAGAGTATTGGCAAGCACAT 57.923 42.857 5.96 0.00 0.00 3.21
4959 5288 3.012518 ACAGAGTATTGGCAAGCACATC 58.987 45.455 5.96 6.19 0.00 3.06
4960 5289 3.011818 CAGAGTATTGGCAAGCACATCA 58.988 45.455 5.96 0.00 0.00 3.07
4961 5290 3.630769 CAGAGTATTGGCAAGCACATCAT 59.369 43.478 5.96 0.00 0.00 2.45
4962 5291 4.097437 CAGAGTATTGGCAAGCACATCATT 59.903 41.667 5.96 0.00 0.00 2.57
4963 5292 5.297527 CAGAGTATTGGCAAGCACATCATTA 59.702 40.000 5.96 0.00 0.00 1.90
4964 5293 6.016527 CAGAGTATTGGCAAGCACATCATTAT 60.017 38.462 5.96 0.00 0.00 1.28
4966 5295 7.173907 AGAGTATTGGCAAGCACATCATTATAC 59.826 37.037 5.96 0.00 0.00 1.47
4969 5298 3.559655 TGGCAAGCACATCATTATACGTC 59.440 43.478 0.00 0.00 0.00 4.34
4971 5300 4.518217 GCAAGCACATCATTATACGTCAC 58.482 43.478 0.00 0.00 0.00 3.67
4976 5305 4.090066 GCACATCATTATACGTCACGATCC 59.910 45.833 2.91 0.00 0.00 3.36
4983 5312 6.419710 TCATTATACGTCACGATCCATTGTTC 59.580 38.462 2.91 0.00 0.00 3.18
4988 5317 3.981416 CGTCACGATCCATTGTTCGATAT 59.019 43.478 11.72 0.00 37.20 1.63
4993 5322 5.635280 CACGATCCATTGTTCGATATAGCTT 59.365 40.000 11.72 0.00 37.20 3.74
4995 5324 5.003872 CGATCCATTGTTCGATATAGCTTCG 59.996 44.000 0.00 0.00 36.09 3.79
5004 5340 5.190992 TCGATATAGCTTCGTGCCTTTTA 57.809 39.130 6.21 0.00 44.23 1.52
5008 5344 6.305877 CGATATAGCTTCGTGCCTTTTACTAG 59.694 42.308 0.00 0.00 44.23 2.57
5141 5477 2.031012 CGTGCACCTCCTGAAGCA 59.969 61.111 12.15 0.00 34.10 3.91
5156 5492 4.159321 CCTGAAGCAGAGTTCTGATCTACA 59.841 45.833 13.13 7.32 46.59 2.74
5208 5547 1.873698 TTTCCTGTGTTGGTAGTCGC 58.126 50.000 0.00 0.00 0.00 5.19
5210 5549 1.375523 CCTGTGTTGGTAGTCGCCC 60.376 63.158 0.00 0.00 0.00 6.13
5211 5550 1.736645 CTGTGTTGGTAGTCGCCCG 60.737 63.158 0.00 0.00 0.00 6.13
5212 5551 3.116531 GTGTTGGTAGTCGCCCGC 61.117 66.667 0.00 0.00 0.00 6.13
5331 5670 2.859526 TGTTTTGAATTGCTGCGTCA 57.140 40.000 0.00 0.00 0.00 4.35
5348 5687 2.161855 GTCAGTGCCCATGTTGATTCA 58.838 47.619 0.00 0.00 0.00 2.57
5391 5835 9.639601 CATCTTTGTTGTACTACTGATGAACTA 57.360 33.333 20.98 2.40 33.92 2.24
5500 5950 4.689071 TGTATACCATGTTAGGCTGAACG 58.311 43.478 0.00 0.00 31.59 3.95
5552 6002 1.324740 TGGGCCAGCTCATCAAATGC 61.325 55.000 0.00 0.00 0.00 3.56
5553 6003 1.440476 GGCCAGCTCATCAAATGCC 59.560 57.895 0.00 0.00 0.00 4.40
5554 6004 1.041447 GGCCAGCTCATCAAATGCCT 61.041 55.000 0.00 0.00 34.61 4.75
5555 6005 0.822164 GCCAGCTCATCAAATGCCTT 59.178 50.000 0.00 0.00 0.00 4.35
5556 6006 2.026641 GCCAGCTCATCAAATGCCTTA 58.973 47.619 0.00 0.00 0.00 2.69
5557 6007 2.626743 GCCAGCTCATCAAATGCCTTAT 59.373 45.455 0.00 0.00 0.00 1.73
5560 6010 5.287226 CCAGCTCATCAAATGCCTTATTTC 58.713 41.667 0.00 0.00 36.87 2.17
5562 6012 6.462487 CCAGCTCATCAAATGCCTTATTTCAT 60.462 38.462 0.00 0.00 36.87 2.57
5570 6027 9.638176 ATCAAATGCCTTATTTCATCTAGAGTT 57.362 29.630 0.00 0.00 36.87 3.01
5620 6081 3.020984 AGAGTCCAGTTTCGAGATCCTC 58.979 50.000 0.00 0.00 0.00 3.71
5623 6084 2.494073 GTCCAGTTTCGAGATCCTCTGT 59.506 50.000 0.00 0.00 0.00 3.41
5642 6104 7.400339 TCCTCTGTGAGTTTGAATAAGATACCT 59.600 37.037 0.00 0.00 0.00 3.08
5690 6152 9.797642 AATGACATAGGATTTAGATGTGCAATA 57.202 29.630 0.00 0.00 33.99 1.90
5697 6159 8.627208 AGGATTTAGATGTGCAATACTTATGG 57.373 34.615 0.00 0.00 0.00 2.74
5778 6241 4.658435 TGTCTGCTATATAAAGGGCCTGAA 59.342 41.667 6.92 0.00 0.00 3.02
5820 6283 6.585322 CAGAGAGAAATTTCATTGTTTGCCTC 59.415 38.462 19.99 10.62 0.00 4.70
5829 6292 7.849804 TTTCATTGTTTGCCTCTATCTACTC 57.150 36.000 0.00 0.00 0.00 2.59
5830 6293 6.544928 TCATTGTTTGCCTCTATCTACTCA 57.455 37.500 0.00 0.00 0.00 3.41
5836 6299 9.547753 TTGTTTGCCTCTATCTACTCAATAATC 57.452 33.333 0.00 0.00 0.00 1.75
5837 6300 8.928448 TGTTTGCCTCTATCTACTCAATAATCT 58.072 33.333 0.00 0.00 0.00 2.40
5878 6344 8.515695 AGCAGATCATTTCATCTTGTCAATTA 57.484 30.769 0.00 0.00 30.07 1.40
5880 6346 9.017669 GCAGATCATTTCATCTTGTCAATTAAC 57.982 33.333 0.00 0.00 30.07 2.01
5913 6381 3.449018 TGTGAAGCTAGAAGATGGAGGAC 59.551 47.826 0.00 0.00 0.00 3.85
5937 6405 3.987868 GTGTATATACTGCACCATCCACG 59.012 47.826 13.89 0.00 34.68 4.94
5940 6408 1.983119 ATACTGCACCATCCACGGGG 61.983 60.000 0.00 0.00 0.00 5.73
5976 6444 1.633432 CGCCCAAATCTCCCCCATATA 59.367 52.381 0.00 0.00 0.00 0.86
5982 6450 6.381133 GCCCAAATCTCCCCCATATATTTTAG 59.619 42.308 0.00 0.00 0.00 1.85
5983 6451 6.897413 CCCAAATCTCCCCCATATATTTTAGG 59.103 42.308 0.00 0.00 0.00 2.69
5984 6452 7.257751 CCCAAATCTCCCCCATATATTTTAGGA 60.258 40.741 0.00 0.00 0.00 2.94
5985 6453 8.176780 CCAAATCTCCCCCATATATTTTAGGAA 58.823 37.037 0.00 0.00 0.00 3.36
5986 6454 9.600432 CAAATCTCCCCCATATATTTTAGGAAA 57.400 33.333 0.00 0.00 0.00 3.13
5988 6456 9.997172 AATCTCCCCCATATATTTTAGGAAATC 57.003 33.333 0.00 0.00 36.82 2.17
5989 6457 7.630082 TCTCCCCCATATATTTTAGGAAATCG 58.370 38.462 0.00 0.00 36.82 3.34
5990 6458 7.238933 TCTCCCCCATATATTTTAGGAAATCGT 59.761 37.037 0.00 0.00 36.82 3.73
5991 6459 7.761608 TCCCCCATATATTTTAGGAAATCGTT 58.238 34.615 0.00 0.00 36.82 3.85
5992 6460 8.228905 TCCCCCATATATTTTAGGAAATCGTTT 58.771 33.333 0.00 0.00 36.82 3.60
5993 6461 9.523168 CCCCCATATATTTTAGGAAATCGTTTA 57.477 33.333 0.00 0.00 36.82 2.01
6003 6471 9.562583 TTTTAGGAAATCGTTTATTTTCATCCG 57.437 29.630 0.00 0.00 37.93 4.18
6004 6472 6.131544 AGGAAATCGTTTATTTTCATCCGG 57.868 37.500 0.00 0.00 37.93 5.14
6005 6473 4.738252 GGAAATCGTTTATTTTCATCCGGC 59.262 41.667 0.00 0.00 37.93 6.13
6006 6474 5.449999 GGAAATCGTTTATTTTCATCCGGCT 60.450 40.000 0.00 0.00 37.93 5.52
6007 6475 4.552166 ATCGTTTATTTTCATCCGGCTG 57.448 40.909 0.00 0.00 0.00 4.85
6008 6476 3.601435 TCGTTTATTTTCATCCGGCTGA 58.399 40.909 3.28 3.28 0.00 4.26
6009 6477 4.196193 TCGTTTATTTTCATCCGGCTGAT 58.804 39.130 9.15 0.00 0.00 2.90
6010 6478 5.361427 TCGTTTATTTTCATCCGGCTGATA 58.639 37.500 9.15 1.01 30.56 2.15
6011 6479 5.818336 TCGTTTATTTTCATCCGGCTGATAA 59.182 36.000 9.15 11.11 30.56 1.75
6012 6480 5.907391 CGTTTATTTTCATCCGGCTGATAAC 59.093 40.000 9.15 7.91 30.56 1.89
6013 6481 6.457663 CGTTTATTTTCATCCGGCTGATAACA 60.458 38.462 9.15 0.00 30.56 2.41
6014 6482 6.618287 TTATTTTCATCCGGCTGATAACAG 57.382 37.500 9.15 0.00 45.91 3.16
6022 6490 4.072913 CTGATAACAGCGACGCGT 57.927 55.556 13.85 13.85 37.33 6.01
6023 6491 3.229652 CTGATAACAGCGACGCGTA 57.770 52.632 13.97 8.71 37.33 4.42
6024 6492 1.541475 CTGATAACAGCGACGCGTAA 58.459 50.000 13.97 1.75 37.33 3.18
6025 6493 1.513178 CTGATAACAGCGACGCGTAAG 59.487 52.381 13.97 11.24 37.33 2.34
6026 6494 1.135603 TGATAACAGCGACGCGTAAGT 60.136 47.619 13.97 5.54 41.68 2.24
6027 6495 1.511958 GATAACAGCGACGCGTAAGTC 59.488 52.381 13.97 7.91 41.68 3.01
6039 6507 2.190325 CGTAAGTCGCCTTGTCCTAG 57.810 55.000 0.00 0.00 31.89 3.02
6040 6508 1.471684 CGTAAGTCGCCTTGTCCTAGT 59.528 52.381 0.00 0.00 31.89 2.57
6041 6509 2.731341 CGTAAGTCGCCTTGTCCTAGTG 60.731 54.545 0.00 0.00 31.89 2.74
6042 6510 1.629043 AAGTCGCCTTGTCCTAGTGA 58.371 50.000 0.00 0.00 0.00 3.41
6043 6511 0.889306 AGTCGCCTTGTCCTAGTGAC 59.111 55.000 4.84 4.84 44.72 3.67
6050 6518 4.454554 GTCCTAGTGACGCGTGTC 57.545 61.111 20.70 22.00 45.71 3.67
6051 6519 1.154073 GTCCTAGTGACGCGTGTCC 60.154 63.158 25.28 16.42 44.86 4.02
6052 6520 2.181021 CCTAGTGACGCGTGTCCC 59.819 66.667 25.28 15.15 44.86 4.46
6053 6521 2.202440 CTAGTGACGCGTGTCCCG 60.202 66.667 25.28 7.97 44.86 5.14
6072 6540 4.947147 GTGGCGTGGACCTGGCAA 62.947 66.667 13.66 0.00 42.68 4.52
6073 6541 4.947147 TGGCGTGGACCTGGCAAC 62.947 66.667 10.40 0.00 37.75 4.17
6075 6543 4.643387 GCGTGGACCTGGCAACCT 62.643 66.667 0.00 0.00 0.00 3.50
6076 6544 2.113139 CGTGGACCTGGCAACCTT 59.887 61.111 0.00 0.00 0.00 3.50
6077 6545 1.373435 CGTGGACCTGGCAACCTTA 59.627 57.895 0.00 0.00 0.00 2.69
6078 6546 0.035439 CGTGGACCTGGCAACCTTAT 60.035 55.000 0.00 0.00 0.00 1.73
6079 6547 1.751437 GTGGACCTGGCAACCTTATC 58.249 55.000 0.00 0.00 0.00 1.75
6080 6548 0.623723 TGGACCTGGCAACCTTATCC 59.376 55.000 0.00 0.00 0.00 2.59
6081 6549 0.919710 GGACCTGGCAACCTTATCCT 59.080 55.000 0.00 0.00 0.00 3.24
6082 6550 1.134068 GGACCTGGCAACCTTATCCTC 60.134 57.143 0.00 0.00 0.00 3.71
6083 6551 1.840635 GACCTGGCAACCTTATCCTCT 59.159 52.381 0.00 0.00 0.00 3.69
6084 6552 1.840635 ACCTGGCAACCTTATCCTCTC 59.159 52.381 0.00 0.00 0.00 3.20
6085 6553 1.141858 CCTGGCAACCTTATCCTCTCC 59.858 57.143 0.00 0.00 0.00 3.71
6086 6554 0.830648 TGGCAACCTTATCCTCTCCG 59.169 55.000 0.00 0.00 0.00 4.63
6087 6555 0.533085 GGCAACCTTATCCTCTCCGC 60.533 60.000 0.00 0.00 0.00 5.54
6088 6556 0.876342 GCAACCTTATCCTCTCCGCG 60.876 60.000 0.00 0.00 0.00 6.46
6089 6557 0.460311 CAACCTTATCCTCTCCGCGT 59.540 55.000 4.92 0.00 0.00 6.01
6090 6558 0.460311 AACCTTATCCTCTCCGCGTG 59.540 55.000 4.92 0.00 0.00 5.34
6091 6559 1.300233 CCTTATCCTCTCCGCGTGC 60.300 63.158 4.92 0.00 0.00 5.34
6092 6560 1.300233 CTTATCCTCTCCGCGTGCC 60.300 63.158 4.92 0.00 0.00 5.01
6093 6561 2.701163 CTTATCCTCTCCGCGTGCCC 62.701 65.000 4.92 0.00 0.00 5.36
6108 6576 3.237741 CCCCTCGGCTCCCTCATC 61.238 72.222 0.00 0.00 0.00 2.92
6109 6577 2.123077 CCCTCGGCTCCCTCATCT 60.123 66.667 0.00 0.00 0.00 2.90
6110 6578 2.206536 CCCTCGGCTCCCTCATCTC 61.207 68.421 0.00 0.00 0.00 2.75
6111 6579 2.206536 CCTCGGCTCCCTCATCTCC 61.207 68.421 0.00 0.00 0.00 3.71
6112 6580 1.152567 CTCGGCTCCCTCATCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
6113 6581 0.111446 CTCGGCTCCCTCATCTCCTA 59.889 60.000 0.00 0.00 0.00 2.94
6114 6582 0.178987 TCGGCTCCCTCATCTCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
6115 6583 1.182385 CGGCTCCCTCATCTCCTACC 61.182 65.000 0.00 0.00 0.00 3.18
6116 6584 0.189822 GGCTCCCTCATCTCCTACCT 59.810 60.000 0.00 0.00 0.00 3.08
6117 6585 1.627864 GCTCCCTCATCTCCTACCTC 58.372 60.000 0.00 0.00 0.00 3.85
6118 6586 1.146982 GCTCCCTCATCTCCTACCTCT 59.853 57.143 0.00 0.00 0.00 3.69
6119 6587 2.875296 CTCCCTCATCTCCTACCTCTG 58.125 57.143 0.00 0.00 0.00 3.35
6120 6588 1.133325 TCCCTCATCTCCTACCTCTGC 60.133 57.143 0.00 0.00 0.00 4.26
6121 6589 1.412217 CCCTCATCTCCTACCTCTGCA 60.412 57.143 0.00 0.00 0.00 4.41
6122 6590 1.962807 CCTCATCTCCTACCTCTGCAG 59.037 57.143 7.63 7.63 0.00 4.41
6123 6591 2.424091 CCTCATCTCCTACCTCTGCAGA 60.424 54.545 17.19 17.19 0.00 4.26
6124 6592 3.295093 CTCATCTCCTACCTCTGCAGAA 58.705 50.000 18.85 1.66 0.00 3.02
6125 6593 3.295093 TCATCTCCTACCTCTGCAGAAG 58.705 50.000 18.85 14.75 0.00 2.85
6126 6594 1.479709 TCTCCTACCTCTGCAGAAGC 58.520 55.000 18.85 0.00 42.57 3.86
6139 6607 3.967203 GCAGAAGCAAATCCTCATCTC 57.033 47.619 0.00 0.00 41.58 2.75
6140 6608 3.543665 GCAGAAGCAAATCCTCATCTCT 58.456 45.455 0.00 0.00 41.58 3.10
6141 6609 3.946558 GCAGAAGCAAATCCTCATCTCTT 59.053 43.478 0.00 0.00 41.58 2.85
6142 6610 4.398673 GCAGAAGCAAATCCTCATCTCTTT 59.601 41.667 0.00 0.00 41.58 2.52
6143 6611 5.448904 GCAGAAGCAAATCCTCATCTCTTTC 60.449 44.000 0.00 0.00 41.58 2.62
6144 6612 5.881443 CAGAAGCAAATCCTCATCTCTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
6145 6613 6.037391 CAGAAGCAAATCCTCATCTCTTTCTC 59.963 42.308 0.00 0.00 0.00 2.87
6146 6614 4.779696 AGCAAATCCTCATCTCTTTCTCC 58.220 43.478 0.00 0.00 0.00 3.71
6147 6615 3.559242 GCAAATCCTCATCTCTTTCTCCG 59.441 47.826 0.00 0.00 0.00 4.63
6148 6616 4.125703 CAAATCCTCATCTCTTTCTCCGG 58.874 47.826 0.00 0.00 0.00 5.14
6149 6617 2.828661 TCCTCATCTCTTTCTCCGGA 57.171 50.000 2.93 2.93 0.00 5.14
6150 6618 2.379972 TCCTCATCTCTTTCTCCGGAC 58.620 52.381 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.419759 CCGTCCGTTTTCCCGCAG 61.420 66.667 0.00 0.00 0.00 5.18
35 36 3.719144 CGTGCCGTCCGTTTTCCC 61.719 66.667 0.00 0.00 0.00 3.97
79 80 1.739562 GCTGGATCGATCGCATCCC 60.740 63.158 28.35 19.20 39.43 3.85
167 168 3.474034 GACAGCTCTGACGTGCGC 61.474 66.667 0.00 0.00 34.94 6.09
222 223 4.959596 GGATGCGCGAGGGAGAGC 62.960 72.222 12.10 0.00 37.45 4.09
223 224 3.496875 CTGGATGCGCGAGGGAGAG 62.497 68.421 12.10 0.00 0.00 3.20
249 250 0.377203 GAAACAATGTCCGATCCCGC 59.623 55.000 0.00 0.00 0.00 6.13
257 258 5.467063 ACGAGAAGAAGAAGAAACAATGTCC 59.533 40.000 0.00 0.00 0.00 4.02
259 260 6.763610 AGAACGAGAAGAAGAAGAAACAATGT 59.236 34.615 0.00 0.00 0.00 2.71
279 280 1.214589 CCCACCGGACTACAGAACG 59.785 63.158 9.46 0.00 0.00 3.95
280 281 1.079336 GCCCACCGGACTACAGAAC 60.079 63.158 9.46 0.00 0.00 3.01
281 282 2.288025 GGCCCACCGGACTACAGAA 61.288 63.158 9.46 0.00 32.34 3.02
282 283 2.682494 GGCCCACCGGACTACAGA 60.682 66.667 9.46 0.00 32.34 3.41
355 357 5.103813 TGAGTAGGAGTAGCACCCTATTACA 60.104 44.000 0.00 0.00 37.37 2.41
356 358 5.241285 GTGAGTAGGAGTAGCACCCTATTAC 59.759 48.000 0.00 0.00 37.37 1.89
357 359 5.133999 AGTGAGTAGGAGTAGCACCCTATTA 59.866 44.000 0.00 0.00 37.37 0.98
358 360 4.079096 AGTGAGTAGGAGTAGCACCCTATT 60.079 45.833 0.00 0.00 37.37 1.73
359 361 3.464080 AGTGAGTAGGAGTAGCACCCTAT 59.536 47.826 0.00 0.00 37.37 2.57
360 362 2.851194 AGTGAGTAGGAGTAGCACCCTA 59.149 50.000 0.00 0.00 34.11 3.53
380 398 9.553064 AGTTATGAATGAAGATTTGTAGGCTAG 57.447 33.333 0.00 0.00 0.00 3.42
381 399 9.905713 AAGTTATGAATGAAGATTTGTAGGCTA 57.094 29.630 0.00 0.00 0.00 3.93
383 401 8.677300 TGAAGTTATGAATGAAGATTTGTAGGC 58.323 33.333 0.00 0.00 0.00 3.93
390 408 9.798994 GCATCTTTGAAGTTATGAATGAAGATT 57.201 29.630 0.00 0.00 32.11 2.40
391 409 8.963725 TGCATCTTTGAAGTTATGAATGAAGAT 58.036 29.630 0.00 0.00 34.06 2.40
402 476 6.770785 AGTAAACCACTGCATCTTTGAAGTTA 59.229 34.615 0.00 0.00 38.74 2.24
405 479 5.695851 AGTAAACCACTGCATCTTTGAAG 57.304 39.130 0.00 0.00 35.62 3.02
408 482 7.370383 ACATAAAGTAAACCACTGCATCTTTG 58.630 34.615 0.00 0.00 37.63 2.77
410 484 8.807948 ATACATAAAGTAAACCACTGCATCTT 57.192 30.769 0.00 0.00 37.63 2.40
419 493 9.226606 CCTGACTTGAATACATAAAGTAAACCA 57.773 33.333 0.00 0.00 36.05 3.67
421 495 8.182227 GGCCTGACTTGAATACATAAAGTAAAC 58.818 37.037 0.00 0.00 36.05 2.01
425 499 5.815581 TGGCCTGACTTGAATACATAAAGT 58.184 37.500 3.32 0.00 36.87 2.66
426 500 5.220931 GCTGGCCTGACTTGAATACATAAAG 60.221 44.000 14.77 0.00 0.00 1.85
456 531 1.152756 GTCCATATGGGGGTGTGCC 60.153 63.158 21.78 0.00 37.22 5.01
460 535 0.112995 CATGGGTCCATATGGGGGTG 59.887 60.000 21.78 9.88 37.22 4.61
465 540 2.837591 TCCGTATCATGGGTCCATATGG 59.162 50.000 16.25 16.25 34.91 2.74
556 683 9.685828 GGTTTGTACTTTGTTCTGCAAATATAA 57.314 29.630 0.00 0.00 45.00 0.98
558 685 6.861055 CGGTTTGTACTTTGTTCTGCAAATAT 59.139 34.615 0.00 0.00 45.00 1.28
560 687 5.040635 CGGTTTGTACTTTGTTCTGCAAAT 58.959 37.500 0.00 0.00 45.00 2.32
561 688 4.156190 TCGGTTTGTACTTTGTTCTGCAAA 59.844 37.500 0.00 0.00 44.05 3.68
567 694 3.476181 GCGATCGGTTTGTACTTTGTTC 58.524 45.455 18.30 0.00 0.00 3.18
570 697 1.201877 CGGCGATCGGTTTGTACTTTG 60.202 52.381 18.30 0.00 34.75 2.77
582 709 0.179202 TTGCATTTGTTCGGCGATCG 60.179 50.000 11.76 11.69 40.90 3.69
610 737 8.794553 TCGTTCTTCTTGTCTAAAGAGAACTAT 58.205 33.333 17.90 0.00 35.17 2.12
620 752 8.092068 TGGAATATGTTCGTTCTTCTTGTCTAA 58.908 33.333 0.00 0.00 35.10 2.10
629 761 6.049955 TCCTCTTGGAATATGTTCGTTCTT 57.950 37.500 0.00 0.00 39.87 2.52
651 783 5.949735 TCGCTGGATTTTTCTGGTATTTTC 58.050 37.500 0.00 0.00 0.00 2.29
656 788 2.304761 ACCTCGCTGGATTTTTCTGGTA 59.695 45.455 1.32 0.00 39.71 3.25
675 807 3.972971 CTGCTCTGGCTGGCTGACC 62.973 68.421 6.71 1.90 39.59 4.02
676 808 2.436292 CTGCTCTGGCTGGCTGAC 60.436 66.667 6.71 0.00 39.59 3.51
677 809 2.605601 TCTGCTCTGGCTGGCTGA 60.606 61.111 10.24 10.24 39.59 4.26
678 810 2.125065 CTCTGCTCTGGCTGGCTG 60.125 66.667 2.00 1.75 39.59 4.85
679 811 2.284478 TCTCTGCTCTGGCTGGCT 60.284 61.111 2.00 0.00 39.59 4.75
680 812 2.125188 GTCTCTGCTCTGGCTGGC 60.125 66.667 0.00 0.00 39.59 4.85
681 813 1.218585 CTGTCTCTGCTCTGGCTGG 59.781 63.158 0.00 0.00 39.59 4.85
682 814 1.448189 GCTGTCTCTGCTCTGGCTG 60.448 63.158 0.00 0.00 39.59 4.85
683 815 2.658064 GGCTGTCTCTGCTCTGGCT 61.658 63.158 0.00 0.00 39.59 4.75
684 816 2.125188 GGCTGTCTCTGCTCTGGC 60.125 66.667 0.00 0.00 39.26 4.85
685 817 1.218585 CTGGCTGTCTCTGCTCTGG 59.781 63.158 0.00 0.00 0.00 3.86
686 818 1.448189 GCTGGCTGTCTCTGCTCTG 60.448 63.158 0.00 0.00 0.00 3.35
687 819 0.324183 TAGCTGGCTGTCTCTGCTCT 60.324 55.000 5.25 0.00 39.51 4.09
688 820 0.179113 GTAGCTGGCTGTCTCTGCTC 60.179 60.000 5.25 0.00 39.51 4.26
689 821 0.902048 TGTAGCTGGCTGTCTCTGCT 60.902 55.000 5.25 0.00 41.23 4.24
690 822 0.739112 GTGTAGCTGGCTGTCTCTGC 60.739 60.000 5.25 0.00 0.00 4.26
691 823 0.457509 CGTGTAGCTGGCTGTCTCTG 60.458 60.000 5.25 0.00 0.00 3.35
797 929 1.136305 AGAGACGAGACGAGAGAGAGG 59.864 57.143 0.00 0.00 0.00 3.69
827 960 3.240134 GAGAGTGCCAGGCGGTGAA 62.240 63.158 7.03 0.00 33.28 3.18
828 961 3.695606 GAGAGTGCCAGGCGGTGA 61.696 66.667 7.03 0.00 33.28 4.02
949 1082 0.036294 GTTCCTCGGGGGTTTCTCAG 60.036 60.000 0.00 0.00 36.25 3.35
1242 1375 0.038892 TCACCTTTCCGAGCGTGTAC 60.039 55.000 0.00 0.00 32.03 2.90
1270 1403 2.417515 GGACGGAGAAGTAAGCAAGGAG 60.418 54.545 0.00 0.00 0.00 3.69
1317 1450 6.613755 TTCCGGTCTAAAAGAAACAAGAAG 57.386 37.500 0.00 0.00 0.00 2.85
1318 1451 6.600427 AGTTTCCGGTCTAAAAGAAACAAGAA 59.400 34.615 14.71 0.00 46.67 2.52
1321 1454 6.151480 ACAAGTTTCCGGTCTAAAAGAAACAA 59.849 34.615 14.71 0.00 46.67 2.83
1336 1469 1.578583 ACGAGAACCACAAGTTTCCG 58.421 50.000 0.00 0.00 39.40 4.30
1361 1497 6.940298 ACTTCAAATTCGGTCCTATTTCTTGA 59.060 34.615 0.00 0.00 0.00 3.02
1368 1504 7.519032 TTTTTGACTTCAAATTCGGTCCTAT 57.481 32.000 5.26 0.00 44.30 2.57
1369 1505 6.945938 TTTTTGACTTCAAATTCGGTCCTA 57.054 33.333 5.26 0.00 44.30 2.94
1391 1527 4.319177 CGTTCAATCTCCTGTTCTCCTTT 58.681 43.478 0.00 0.00 0.00 3.11
1392 1528 3.866449 GCGTTCAATCTCCTGTTCTCCTT 60.866 47.826 0.00 0.00 0.00 3.36
1393 1529 2.354203 GCGTTCAATCTCCTGTTCTCCT 60.354 50.000 0.00 0.00 0.00 3.69
1402 1538 1.134401 TGATCCCTGCGTTCAATCTCC 60.134 52.381 0.00 0.00 0.00 3.71
1428 1578 1.741028 TTCTGGGAACTCATGGTGGA 58.259 50.000 0.00 0.00 0.00 4.02
1438 1588 7.125792 TCTATACTTGATCCTTTCTGGGAAC 57.874 40.000 0.00 0.00 39.02 3.62
1441 1591 9.883142 GATAATCTATACTTGATCCTTTCTGGG 57.117 37.037 0.00 0.00 36.20 4.45
1461 1611 9.255304 GAGAGGTGTTTGTTCTGATAGATAATC 57.745 37.037 0.00 0.00 34.93 1.75
1463 1613 7.122204 TCGAGAGGTGTTTGTTCTGATAGATAA 59.878 37.037 0.00 0.00 0.00 1.75
1465 1615 5.419155 TCGAGAGGTGTTTGTTCTGATAGAT 59.581 40.000 0.00 0.00 0.00 1.98
1467 1617 5.060662 TCGAGAGGTGTTTGTTCTGATAG 57.939 43.478 0.00 0.00 0.00 2.08
1468 1618 5.661056 ATCGAGAGGTGTTTGTTCTGATA 57.339 39.130 0.00 0.00 0.00 2.15
1469 1619 4.543590 ATCGAGAGGTGTTTGTTCTGAT 57.456 40.909 0.00 0.00 0.00 2.90
1470 1620 4.202212 TGAATCGAGAGGTGTTTGTTCTGA 60.202 41.667 0.00 0.00 0.00 3.27
1471 1621 4.058124 TGAATCGAGAGGTGTTTGTTCTG 58.942 43.478 0.00 0.00 0.00 3.02
1472 1622 4.039245 TCTGAATCGAGAGGTGTTTGTTCT 59.961 41.667 0.00 0.00 0.00 3.01
1473 1623 4.307432 TCTGAATCGAGAGGTGTTTGTTC 58.693 43.478 0.00 0.00 0.00 3.18
1474 1624 4.336889 TCTGAATCGAGAGGTGTTTGTT 57.663 40.909 0.00 0.00 0.00 2.83
1475 1625 4.336889 TTCTGAATCGAGAGGTGTTTGT 57.663 40.909 0.00 0.00 0.00 2.83
1476 1626 4.153117 CCTTTCTGAATCGAGAGGTGTTTG 59.847 45.833 0.00 0.00 32.23 2.93
1495 1645 0.183492 TGACAGAGCAGTTGCCCTTT 59.817 50.000 0.00 0.00 43.38 3.11
1496 1646 0.403271 ATGACAGAGCAGTTGCCCTT 59.597 50.000 0.00 0.00 43.38 3.95
1497 1647 0.403271 AATGACAGAGCAGTTGCCCT 59.597 50.000 0.00 0.00 43.38 5.19
1498 1648 0.524862 CAATGACAGAGCAGTTGCCC 59.475 55.000 0.00 0.00 43.38 5.36
1516 1671 1.618837 GGCTAGGAACCGATGATAGCA 59.381 52.381 9.91 0.00 40.46 3.49
1527 1682 2.180432 ACGAAAAGGTGGCTAGGAAC 57.820 50.000 0.00 0.00 0.00 3.62
1549 1705 5.516090 TCAAAAGCCGTTACATGACTTTTC 58.484 37.500 0.00 0.00 38.21 2.29
1593 1750 3.063180 CAGATCAAGAGCCGTCAAATGAC 59.937 47.826 3.43 3.43 41.47 3.06
1598 1755 0.250234 CCCAGATCAAGAGCCGTCAA 59.750 55.000 0.00 0.00 0.00 3.18
1620 1777 3.322828 ACAATTATTCCCTGCATGCATCC 59.677 43.478 22.97 0.00 0.00 3.51
1647 1804 3.279116 GCGTCAGGTGCTGCAACA 61.279 61.111 21.23 0.00 0.00 3.33
1654 1811 1.368850 GAAAACACGCGTCAGGTGC 60.369 57.895 9.86 0.00 38.98 5.01
1656 1813 1.433837 GGTGAAAACACGCGTCAGGT 61.434 55.000 9.86 0.45 0.00 4.00
1657 1814 1.278637 GGTGAAAACACGCGTCAGG 59.721 57.895 9.86 0.00 0.00 3.86
1659 1816 0.745128 AAGGGTGAAAACACGCGTCA 60.745 50.000 9.86 0.00 41.99 4.35
1660 1817 1.193874 CTAAGGGTGAAAACACGCGTC 59.806 52.381 9.86 0.00 41.99 5.19
1661 1818 1.223187 CTAAGGGTGAAAACACGCGT 58.777 50.000 5.58 5.58 41.99 6.01
1662 1819 0.515564 CCTAAGGGTGAAAACACGCG 59.484 55.000 3.53 3.53 41.99 6.01
1677 1837 3.746045 ACAGACTTCGCTTTCACCTAA 57.254 42.857 0.00 0.00 0.00 2.69
1715 1877 4.401202 TCTCAGCACCATACGAATTCTACA 59.599 41.667 3.52 0.00 0.00 2.74
1746 1908 4.418013 TTGCATGACATGACGTTTAAGG 57.582 40.909 19.76 0.00 0.00 2.69
1748 1910 6.252967 AGAATTGCATGACATGACGTTTAA 57.747 33.333 19.76 4.31 0.00 1.52
1753 1915 7.073883 CCTATTTAGAATTGCATGACATGACG 58.926 38.462 19.76 0.00 0.00 4.35
1754 1916 7.365741 CCCTATTTAGAATTGCATGACATGAC 58.634 38.462 19.76 10.72 0.00 3.06
1820 1989 2.449031 GATGCGTGGACACAGGGTGA 62.449 60.000 2.98 0.00 36.96 4.02
1893 2069 1.830847 GCCACCGTTGTTTTCCCCT 60.831 57.895 0.00 0.00 0.00 4.79
1894 2070 2.082629 CTGCCACCGTTGTTTTCCCC 62.083 60.000 0.00 0.00 0.00 4.81
1895 2071 1.104577 TCTGCCACCGTTGTTTTCCC 61.105 55.000 0.00 0.00 0.00 3.97
1898 2074 4.864704 ATTATTCTGCCACCGTTGTTTT 57.135 36.364 0.00 0.00 0.00 2.43
1902 2079 3.687212 TGTGTATTATTCTGCCACCGTTG 59.313 43.478 0.00 0.00 0.00 4.10
1974 2151 9.837681 TCCCTCTGATCCATATTAATTGTACTA 57.162 33.333 0.00 0.00 0.00 1.82
1975 2152 8.742125 TCCCTCTGATCCATATTAATTGTACT 57.258 34.615 0.00 0.00 0.00 2.73
1976 2153 8.598041 ACTCCCTCTGATCCATATTAATTGTAC 58.402 37.037 0.00 0.00 0.00 2.90
1977 2154 8.742125 ACTCCCTCTGATCCATATTAATTGTA 57.258 34.615 0.00 0.00 0.00 2.41
1978 2155 7.639062 ACTCCCTCTGATCCATATTAATTGT 57.361 36.000 0.00 0.00 0.00 2.71
1987 2164 8.506083 ACAAATTTATTACTCCCTCTGATCCAT 58.494 33.333 0.00 0.00 0.00 3.41
1988 2165 7.872138 ACAAATTTATTACTCCCTCTGATCCA 58.128 34.615 0.00 0.00 0.00 3.41
1989 2166 8.753497 AACAAATTTATTACTCCCTCTGATCC 57.247 34.615 0.00 0.00 0.00 3.36
1992 2169 8.303876 GCAAAACAAATTTATTACTCCCTCTGA 58.696 33.333 0.00 0.00 0.00 3.27
1993 2170 7.545615 GGCAAAACAAATTTATTACTCCCTCTG 59.454 37.037 0.00 0.00 0.00 3.35
1994 2171 7.454694 AGGCAAAACAAATTTATTACTCCCTCT 59.545 33.333 0.00 0.00 0.00 3.69
2065 2245 8.986477 TTCATTTAGCCAGAAAGAAAATAAGC 57.014 30.769 0.00 0.00 0.00 3.09
2130 2311 1.283321 GATGACCTCCTCTTTTGCCCT 59.717 52.381 0.00 0.00 0.00 5.19
2138 2319 7.534852 AGAAGATAATACAGATGACCTCCTCT 58.465 38.462 0.00 0.00 0.00 3.69
2139 2320 7.669722 AGAGAAGATAATACAGATGACCTCCTC 59.330 40.741 0.00 0.00 0.00 3.71
2140 2321 7.534852 AGAGAAGATAATACAGATGACCTCCT 58.465 38.462 0.00 0.00 0.00 3.69
2142 2323 7.174253 ACGAGAGAAGATAATACAGATGACCTC 59.826 40.741 0.00 0.00 0.00 3.85
2143 2324 7.001674 ACGAGAGAAGATAATACAGATGACCT 58.998 38.462 0.00 0.00 0.00 3.85
2167 2352 3.615155 AGCATGGAAAAGGCTAGAGAAC 58.385 45.455 0.00 0.00 46.08 3.01
2176 2361 2.275318 GACGAGAGAGCATGGAAAAGG 58.725 52.381 0.00 0.00 0.00 3.11
2188 2373 1.251527 GGAGCAGGTTGGACGAGAGA 61.252 60.000 0.00 0.00 0.00 3.10
2196 2381 0.397941 TCTCTGTTGGAGCAGGTTGG 59.602 55.000 0.00 0.00 41.60 3.77
2225 2410 6.832520 TTCATTAATGGTGCAAAGCTAGAA 57.167 33.333 15.36 0.00 0.00 2.10
2319 2504 6.899114 ACTCGTTCAACATTTTCCTATTGAC 58.101 36.000 0.00 0.00 30.99 3.18
2349 2534 7.540299 ACGAACAAAACCAAAAGAATCAAGTA 58.460 30.769 0.00 0.00 0.00 2.24
2389 2576 7.944729 ATTTGTTGCCTAAACTATCACTCAT 57.055 32.000 0.00 0.00 39.70 2.90
2405 2617 7.210174 AGGAACTTTCTTCCTTAATTTGTTGC 58.790 34.615 0.00 0.00 46.21 4.17
2432 2645 7.772332 GGTACACAACCTCTGACAATTATAG 57.228 40.000 0.00 0.00 45.75 1.31
2502 2724 4.761975 TCACGGTAATACTGCTTTTAGGG 58.238 43.478 0.00 0.00 0.00 3.53
2506 2728 4.634443 GGTCATCACGGTAATACTGCTTTT 59.366 41.667 0.00 0.00 0.00 2.27
2511 2733 4.583489 ACTAGGGTCATCACGGTAATACTG 59.417 45.833 0.00 0.00 0.00 2.74
2661 2894 3.296854 TCTCTATAACATGCACCCGTCT 58.703 45.455 0.00 0.00 0.00 4.18
2699 2932 4.526970 ACAATTCGCCCACAATTCTATCT 58.473 39.130 0.00 0.00 0.00 1.98
2714 2947 2.161609 GCCTCCAGGTTGTAACAATTCG 59.838 50.000 0.00 0.00 37.57 3.34
2776 3009 2.649816 ACCCATTTTAAGCAGGAGGAGT 59.350 45.455 0.00 0.00 0.00 3.85
2788 3022 6.374588 TGGTTCTGTTAGGAAACCCATTTTA 58.625 36.000 1.37 0.00 34.49 1.52
2888 3133 0.871722 TCCCATCTTTGAACAACGCG 59.128 50.000 3.53 3.53 0.00 6.01
2891 3136 5.163561 TGTGTTCTTCCCATCTTTGAACAAC 60.164 40.000 8.17 4.81 45.27 3.32
2894 3139 5.514274 TTGTGTTCTTCCCATCTTTGAAC 57.486 39.130 0.00 0.00 37.92 3.18
2984 3229 4.094887 GCTTTTTCACGCATCCTCTGAATA 59.905 41.667 0.00 0.00 0.00 1.75
2987 3232 1.806542 GCTTTTTCACGCATCCTCTGA 59.193 47.619 0.00 0.00 0.00 3.27
3011 3256 5.329035 TGAGGTATTACTTGGGTAACGAC 57.671 43.478 0.00 0.00 40.22 4.34
3014 3259 5.298527 GGCAATGAGGTATTACTTGGGTAAC 59.701 44.000 0.00 0.00 40.22 2.50
3017 3262 3.372675 GGGCAATGAGGTATTACTTGGGT 60.373 47.826 0.00 0.00 0.00 4.51
3069 3314 8.713271 CCAGATGAAAACTAGACAAAGAAGTAC 58.287 37.037 0.00 0.00 0.00 2.73
3147 3392 4.397103 AGGGCCGCACTTTTAAAGTATTAC 59.603 41.667 10.21 1.44 40.46 1.89
3207 3452 6.369615 GCATGAGAGCAAATACACCAAAATTT 59.630 34.615 0.00 0.00 0.00 1.82
3263 3508 7.859325 GTTAGATTTATGTGAAGCTAACCCA 57.141 36.000 12.10 0.00 45.66 4.51
3443 3688 3.806625 ATTGTCAATGGTGCATAAGCC 57.193 42.857 0.00 0.00 41.13 4.35
3705 3950 1.739067 GAACCTCGGTGCTGCTTATT 58.261 50.000 0.00 0.00 0.00 1.40
3826 4071 8.552034 GGACAAGATCAACTGCAATAGTAATAC 58.448 37.037 0.00 0.00 39.18 1.89
4124 4369 1.664659 CAGATTGCGAAGAGGCTTGAG 59.335 52.381 0.00 0.00 0.00 3.02
4206 4451 9.844790 CATTAAACTGCAATATGAAGAGTTGAA 57.155 29.630 0.00 0.00 0.00 2.69
4207 4452 7.970061 GCATTAAACTGCAATATGAAGAGTTGA 59.030 33.333 0.00 0.00 41.87 3.18
4208 4453 7.221452 GGCATTAAACTGCAATATGAAGAGTTG 59.779 37.037 3.61 0.00 44.12 3.16
4209 4454 7.260603 GGCATTAAACTGCAATATGAAGAGTT 58.739 34.615 3.61 0.00 44.12 3.01
4210 4455 6.183360 GGGCATTAAACTGCAATATGAAGAGT 60.183 38.462 3.61 0.00 44.12 3.24
4211 4456 6.183360 TGGGCATTAAACTGCAATATGAAGAG 60.183 38.462 3.61 0.00 44.12 2.85
4212 4457 5.655974 TGGGCATTAAACTGCAATATGAAGA 59.344 36.000 3.61 0.00 44.12 2.87
4230 4475 1.538687 GCACTGGAAAAGCTGGGCAT 61.539 55.000 0.00 0.00 0.00 4.40
4231 4476 2.202395 GCACTGGAAAAGCTGGGCA 61.202 57.895 0.00 0.00 0.00 5.36
4232 4477 1.747325 TTGCACTGGAAAAGCTGGGC 61.747 55.000 0.00 0.00 0.00 5.36
4234 4479 2.557924 TGTATTGCACTGGAAAAGCTGG 59.442 45.455 0.00 0.00 0.00 4.85
4235 4480 3.254166 ACTGTATTGCACTGGAAAAGCTG 59.746 43.478 0.00 0.00 0.00 4.24
4266 4517 5.278463 CGGCTGAAAAAGGAGAAGAATTGAA 60.278 40.000 0.00 0.00 0.00 2.69
4270 4521 3.084786 CCGGCTGAAAAAGGAGAAGAAT 58.915 45.455 0.00 0.00 0.00 2.40
4276 4527 0.039165 GCAACCGGCTGAAAAAGGAG 60.039 55.000 9.57 0.00 40.25 3.69
4277 4528 2.037871 GCAACCGGCTGAAAAAGGA 58.962 52.632 9.57 0.00 40.25 3.36
4278 4529 4.653555 GCAACCGGCTGAAAAAGG 57.346 55.556 9.57 0.00 40.25 3.11
4365 4616 2.402388 CAAGCTTGGCGCATCTCG 59.598 61.111 19.14 0.00 42.61 4.04
4395 4646 0.846693 AACAGACACCTCCAAGGCTT 59.153 50.000 0.00 0.00 39.63 4.35
4509 4760 1.931007 AAGGAAGGGGGAGCATCAGC 61.931 60.000 0.00 0.00 42.56 4.26
4548 4799 0.855349 CCGAAATCAATCTCGCTCCG 59.145 55.000 0.00 0.00 33.70 4.63
4631 4889 2.282701 TACCGCCGTCTTCATGTTAC 57.717 50.000 0.00 0.00 0.00 2.50
4642 4900 0.107848 CCATTCCTTCTTACCGCCGT 60.108 55.000 0.00 0.00 0.00 5.68
4644 4902 2.014857 GTTCCATTCCTTCTTACCGCC 58.985 52.381 0.00 0.00 0.00 6.13
4646 4904 4.120589 GCTAGTTCCATTCCTTCTTACCG 58.879 47.826 0.00 0.00 0.00 4.02
4648 4906 4.572795 GCAGCTAGTTCCATTCCTTCTTAC 59.427 45.833 0.00 0.00 0.00 2.34
4650 4908 3.265479 AGCAGCTAGTTCCATTCCTTCTT 59.735 43.478 0.00 0.00 0.00 2.52
4671 4929 7.310664 TGCAAATGAGCAGAAAAGATAGAAAG 58.689 34.615 0.00 0.00 40.11 2.62
4722 4980 6.506147 TGACAAAACAGAACAGATTTCATGG 58.494 36.000 0.00 0.00 0.00 3.66
4733 4991 9.701355 CCAACATAAATTTTGACAAAACAGAAC 57.299 29.630 15.36 0.00 32.37 3.01
4752 5010 0.325933 AGCAGTGCAGAGCCAACATA 59.674 50.000 19.20 0.00 0.00 2.29
4775 5033 2.886862 TGACAAAACAACAGCATGGG 57.113 45.000 0.00 0.00 43.62 4.00
4783 5041 6.639671 TGCAAACAAGTATGACAAAACAAC 57.360 33.333 0.00 0.00 0.00 3.32
4784 5042 8.812329 GTTATGCAAACAAGTATGACAAAACAA 58.188 29.630 0.00 0.00 0.00 2.83
4786 5044 8.574196 AGTTATGCAAACAAGTATGACAAAAC 57.426 30.769 12.28 0.00 0.00 2.43
4787 5045 9.672086 GTAGTTATGCAAACAAGTATGACAAAA 57.328 29.630 12.28 0.00 0.00 2.44
4792 5051 9.884636 ATACAGTAGTTATGCAAACAAGTATGA 57.115 29.630 12.28 0.00 0.00 2.15
4812 5071 4.157289 CGACACCAGGTACTAACATACAGT 59.843 45.833 0.00 0.00 36.02 3.55
4832 5159 0.454452 GGATGCCAAAACTTCGCGAC 60.454 55.000 9.15 0.00 0.00 5.19
4835 5162 0.598065 ACTGGATGCCAAAACTTCGC 59.402 50.000 0.00 0.00 30.80 4.70
4836 5163 6.038161 TGAATATACTGGATGCCAAAACTTCG 59.962 38.462 0.00 0.00 30.80 3.79
4864 5191 4.141287 CACCCTCAACCATGTACTCAAAA 58.859 43.478 0.00 0.00 0.00 2.44
4880 5209 4.825546 CATATTCTGCATGTTCACCCTC 57.174 45.455 0.00 0.00 0.00 4.30
4893 5222 3.065655 GCTACAGCAGGAGCATATTCTG 58.934 50.000 8.73 0.00 45.49 3.02
4925 5254 2.541233 ACTCTGTATGGCCAGTCTCT 57.459 50.000 13.05 0.00 34.02 3.10
4938 5267 2.566833 TGTGCTTGCCAATACTCTGT 57.433 45.000 0.00 0.00 0.00 3.41
4939 5268 3.011818 TGATGTGCTTGCCAATACTCTG 58.988 45.455 0.00 0.00 0.00 3.35
4940 5269 3.354948 TGATGTGCTTGCCAATACTCT 57.645 42.857 0.00 0.00 0.00 3.24
4941 5270 4.644103 AATGATGTGCTTGCCAATACTC 57.356 40.909 0.00 0.00 0.00 2.59
4942 5271 6.073058 CGTATAATGATGTGCTTGCCAATACT 60.073 38.462 0.00 0.00 0.00 2.12
4944 5273 5.762711 ACGTATAATGATGTGCTTGCCAATA 59.237 36.000 0.00 0.00 0.00 1.90
4945 5274 4.580167 ACGTATAATGATGTGCTTGCCAAT 59.420 37.500 0.00 0.00 0.00 3.16
4946 5275 3.944650 ACGTATAATGATGTGCTTGCCAA 59.055 39.130 0.00 0.00 0.00 4.52
4947 5276 3.540617 ACGTATAATGATGTGCTTGCCA 58.459 40.909 0.00 0.00 0.00 4.92
4948 5277 3.559655 TGACGTATAATGATGTGCTTGCC 59.440 43.478 0.00 0.00 0.00 4.52
4949 5278 4.518217 GTGACGTATAATGATGTGCTTGC 58.482 43.478 0.00 0.00 0.00 4.01
4950 5279 4.502645 TCGTGACGTATAATGATGTGCTTG 59.497 41.667 4.40 0.00 0.00 4.01
4951 5280 4.678622 TCGTGACGTATAATGATGTGCTT 58.321 39.130 4.40 0.00 0.00 3.91
4952 5281 4.301637 TCGTGACGTATAATGATGTGCT 57.698 40.909 4.40 0.00 0.00 4.40
4953 5282 4.090066 GGATCGTGACGTATAATGATGTGC 59.910 45.833 4.40 0.00 0.00 4.57
4954 5283 5.219633 TGGATCGTGACGTATAATGATGTG 58.780 41.667 4.40 0.00 0.00 3.21
4955 5284 5.447624 TGGATCGTGACGTATAATGATGT 57.552 39.130 4.40 0.00 0.00 3.06
4956 5285 6.366061 ACAATGGATCGTGACGTATAATGATG 59.634 38.462 4.40 0.00 0.00 3.07
4957 5286 6.455647 ACAATGGATCGTGACGTATAATGAT 58.544 36.000 4.40 0.00 0.00 2.45
4958 5287 5.838529 ACAATGGATCGTGACGTATAATGA 58.161 37.500 4.40 0.00 0.00 2.57
4959 5288 6.525121 AACAATGGATCGTGACGTATAATG 57.475 37.500 4.40 1.64 0.00 1.90
4960 5289 5.401376 CGAACAATGGATCGTGACGTATAAT 59.599 40.000 4.40 0.00 34.95 1.28
4961 5290 4.736307 CGAACAATGGATCGTGACGTATAA 59.264 41.667 4.40 0.00 34.95 0.98
4962 5291 4.035441 TCGAACAATGGATCGTGACGTATA 59.965 41.667 4.40 0.00 39.91 1.47
4963 5292 3.113322 CGAACAATGGATCGTGACGTAT 58.887 45.455 4.40 0.00 34.95 3.06
4964 5293 2.162008 TCGAACAATGGATCGTGACGTA 59.838 45.455 4.40 0.00 39.91 3.57
4966 5295 1.624487 TCGAACAATGGATCGTGACG 58.376 50.000 0.00 0.00 39.91 4.35
4969 5298 5.164233 AGCTATATCGAACAATGGATCGTG 58.836 41.667 9.77 0.00 39.91 4.35
4971 5300 5.003872 CGAAGCTATATCGAACAATGGATCG 59.996 44.000 0.00 4.66 42.76 3.69
4976 5305 4.376413 GGCACGAAGCTATATCGAACAATG 60.376 45.833 12.99 2.01 42.76 2.82
4983 5312 4.982916 AGTAAAAGGCACGAAGCTATATCG 59.017 41.667 4.77 4.77 44.79 2.92
4988 5317 3.194968 AGCTAGTAAAAGGCACGAAGCTA 59.805 43.478 0.00 0.00 44.79 3.32
4993 5322 2.482721 GCAAAGCTAGTAAAAGGCACGA 59.517 45.455 0.00 0.00 0.00 4.35
4995 5324 5.622770 TTAGCAAAGCTAGTAAAAGGCAC 57.377 39.130 0.00 0.00 42.34 5.01
5004 5340 6.796705 ACGTTGTTTATTAGCAAAGCTAGT 57.203 33.333 0.00 0.00 42.34 2.57
5008 5344 5.683743 TGTGAACGTTGTTTATTAGCAAAGC 59.316 36.000 5.00 0.00 0.00 3.51
5024 5360 1.095228 CACCCTGCAGTTGTGAACGT 61.095 55.000 22.57 0.00 36.23 3.99
5141 5477 4.284490 TGCACCTTTGTAGATCAGAACTCT 59.716 41.667 0.00 0.00 0.00 3.24
5156 5492 2.898705 CGAGAGATTAGCTGCACCTTT 58.101 47.619 1.02 0.00 0.00 3.11
5211 5550 1.170290 AACAACCGGCTAACACTGGC 61.170 55.000 0.00 0.00 39.99 4.85
5212 5551 0.591170 CAACAACCGGCTAACACTGG 59.409 55.000 0.00 0.00 42.28 4.00
5331 5670 2.024655 AGGATGAATCAACATGGGCACT 60.025 45.455 0.00 0.00 0.00 4.40
5348 5687 9.686683 AACAAAGATGTACAATTTAGCTAGGAT 57.313 29.630 0.00 0.00 39.40 3.24
5383 5827 1.661112 GAACAGCAGGCGTAGTTCATC 59.339 52.381 16.56 0.00 39.95 2.92
5391 5835 1.893801 ACTAGTTAGAACAGCAGGCGT 59.106 47.619 0.00 0.00 0.00 5.68
5500 5950 3.441572 GGCATATCATGGTCCATAACAGC 59.558 47.826 3.38 5.58 0.00 4.40
5552 6002 8.260818 TCAACTGGAACTCTAGATGAAATAAGG 58.739 37.037 0.00 0.00 34.38 2.69
5553 6003 9.829507 ATCAACTGGAACTCTAGATGAAATAAG 57.170 33.333 7.04 0.00 39.06 1.73
5557 6007 9.658799 CTTAATCAACTGGAACTCTAGATGAAA 57.341 33.333 7.04 0.00 39.06 2.69
5560 6010 7.044181 TGCTTAATCAACTGGAACTCTAGATG 58.956 38.462 0.00 0.00 0.00 2.90
5562 6012 6.605471 TGCTTAATCAACTGGAACTCTAGA 57.395 37.500 0.00 0.00 0.00 2.43
5570 6027 5.426689 AGAGACATGCTTAATCAACTGGA 57.573 39.130 0.00 0.00 0.00 3.86
5620 6081 9.307121 CTGTAGGTATCTTATTCAAACTCACAG 57.693 37.037 0.00 0.00 0.00 3.66
5778 6241 5.721960 TCTCTCTGCTTTACTTATTGAGGGT 59.278 40.000 0.00 0.00 0.00 4.34
5789 6252 9.468532 AAACAATGAAATTTCTCTCTGCTTTAC 57.531 29.630 18.64 0.00 31.22 2.01
5808 6271 7.798596 ATTGAGTAGATAGAGGCAAACAATG 57.201 36.000 0.00 0.00 0.00 2.82
5836 6299 9.926158 ATGATCTGCTACTCACATAAAGAATAG 57.074 33.333 0.00 0.00 0.00 1.73
5838 6301 9.624373 AAATGATCTGCTACTCACATAAAGAAT 57.376 29.630 0.00 0.00 0.00 2.40
5878 6344 4.283363 AGCTTCACATGTCATCAGAGTT 57.717 40.909 0.00 0.00 0.00 3.01
5880 6346 5.259832 TCTAGCTTCACATGTCATCAGAG 57.740 43.478 0.00 0.00 0.00 3.35
5881 6347 5.420104 TCTTCTAGCTTCACATGTCATCAGA 59.580 40.000 0.00 0.00 0.00 3.27
5953 6421 2.674754 GGGGAGATTTGGGCGTCA 59.325 61.111 0.00 0.00 0.00 4.35
5982 6450 4.738252 GCCGGATGAAAATAAACGATTTCC 59.262 41.667 5.05 0.00 36.71 3.13
5983 6451 5.455525 CAGCCGGATGAAAATAAACGATTTC 59.544 40.000 16.48 0.00 36.71 2.17
5984 6452 5.124776 TCAGCCGGATGAAAATAAACGATTT 59.875 36.000 22.36 0.00 39.56 2.17
5985 6453 4.638421 TCAGCCGGATGAAAATAAACGATT 59.362 37.500 22.36 0.00 0.00 3.34
5986 6454 4.196193 TCAGCCGGATGAAAATAAACGAT 58.804 39.130 22.36 0.00 0.00 3.73
5987 6455 3.601435 TCAGCCGGATGAAAATAAACGA 58.399 40.909 22.36 0.00 0.00 3.85
5988 6456 4.552166 ATCAGCCGGATGAAAATAAACG 57.448 40.909 28.45 0.00 34.06 3.60
5989 6457 6.791303 TGTTATCAGCCGGATGAAAATAAAC 58.209 36.000 28.45 22.66 36.72 2.01
5990 6458 7.026631 CTGTTATCAGCCGGATGAAAATAAA 57.973 36.000 28.45 12.91 36.72 1.40
5991 6459 6.618287 CTGTTATCAGCCGGATGAAAATAA 57.382 37.500 28.45 17.76 36.72 1.40
6005 6473 1.513178 CTTACGCGTCGCTGTTATCAG 59.487 52.381 18.63 0.00 43.87 2.90
6006 6474 1.135603 ACTTACGCGTCGCTGTTATCA 60.136 47.619 18.63 0.00 0.00 2.15
6007 6475 1.511958 GACTTACGCGTCGCTGTTATC 59.488 52.381 18.63 9.20 0.00 1.75
6008 6476 1.542544 GACTTACGCGTCGCTGTTAT 58.457 50.000 18.63 4.35 0.00 1.89
6009 6477 3.005823 GACTTACGCGTCGCTGTTA 57.994 52.632 18.63 8.02 0.00 2.41
6010 6478 3.838468 GACTTACGCGTCGCTGTT 58.162 55.556 18.63 1.79 0.00 3.16
6024 6492 0.889306 GTCACTAGGACAAGGCGACT 59.111 55.000 0.00 0.00 46.19 4.18
6025 6493 3.420397 GTCACTAGGACAAGGCGAC 57.580 57.895 0.00 0.00 46.19 5.19
6033 6501 1.154073 GGACACGCGTCACTAGGAC 60.154 63.158 9.86 0.00 44.54 3.85
6034 6502 2.338015 GGGACACGCGTCACTAGGA 61.338 63.158 9.86 0.00 42.73 2.94
6035 6503 2.181021 GGGACACGCGTCACTAGG 59.819 66.667 9.86 0.00 42.73 3.02
6036 6504 2.202440 CGGGACACGCGTCACTAG 60.202 66.667 9.86 0.00 43.96 2.57
6055 6523 4.947147 TTGCCAGGTCCACGCCAC 62.947 66.667 0.00 0.00 0.00 5.01
6056 6524 4.947147 GTTGCCAGGTCCACGCCA 62.947 66.667 0.00 0.00 0.00 5.69
6058 6526 2.741486 TAAGGTTGCCAGGTCCACGC 62.741 60.000 0.00 0.00 0.00 5.34
6059 6527 0.035439 ATAAGGTTGCCAGGTCCACG 60.035 55.000 0.00 0.00 0.00 4.94
6060 6528 1.682087 GGATAAGGTTGCCAGGTCCAC 60.682 57.143 0.00 0.00 0.00 4.02
6061 6529 0.623723 GGATAAGGTTGCCAGGTCCA 59.376 55.000 0.00 0.00 0.00 4.02
6062 6530 0.919710 AGGATAAGGTTGCCAGGTCC 59.080 55.000 0.00 0.00 0.00 4.46
6063 6531 1.840635 AGAGGATAAGGTTGCCAGGTC 59.159 52.381 0.00 0.00 0.00 3.85
6064 6532 1.840635 GAGAGGATAAGGTTGCCAGGT 59.159 52.381 0.00 0.00 0.00 4.00
6065 6533 1.141858 GGAGAGGATAAGGTTGCCAGG 59.858 57.143 0.00 0.00 0.00 4.45
6066 6534 1.202580 CGGAGAGGATAAGGTTGCCAG 60.203 57.143 0.00 0.00 0.00 4.85
6067 6535 0.830648 CGGAGAGGATAAGGTTGCCA 59.169 55.000 0.00 0.00 0.00 4.92
6068 6536 0.533085 GCGGAGAGGATAAGGTTGCC 60.533 60.000 0.00 0.00 0.00 4.52
6069 6537 0.876342 CGCGGAGAGGATAAGGTTGC 60.876 60.000 0.00 0.00 0.00 4.17
6070 6538 0.460311 ACGCGGAGAGGATAAGGTTG 59.540 55.000 12.47 0.00 0.00 3.77
6071 6539 0.460311 CACGCGGAGAGGATAAGGTT 59.540 55.000 12.47 0.00 0.00 3.50
6072 6540 2.017559 GCACGCGGAGAGGATAAGGT 62.018 60.000 12.47 0.00 0.00 3.50
6073 6541 1.300233 GCACGCGGAGAGGATAAGG 60.300 63.158 12.47 0.00 0.00 2.69
6074 6542 1.300233 GGCACGCGGAGAGGATAAG 60.300 63.158 12.47 0.00 0.00 1.73
6075 6543 2.792947 GGGCACGCGGAGAGGATAA 61.793 63.158 12.47 0.00 0.00 1.75
6076 6544 3.224324 GGGCACGCGGAGAGGATA 61.224 66.667 12.47 0.00 0.00 2.59
6091 6559 3.237741 GATGAGGGAGCCGAGGGG 61.238 72.222 0.00 0.00 0.00 4.79
6092 6560 2.123077 AGATGAGGGAGCCGAGGG 60.123 66.667 0.00 0.00 0.00 4.30
6093 6561 2.206536 GGAGATGAGGGAGCCGAGG 61.207 68.421 0.00 0.00 0.00 4.63
6094 6562 0.111446 TAGGAGATGAGGGAGCCGAG 59.889 60.000 0.00 0.00 0.00 4.63
6095 6563 0.178987 GTAGGAGATGAGGGAGCCGA 60.179 60.000 0.00 0.00 0.00 5.54
6096 6564 1.182385 GGTAGGAGATGAGGGAGCCG 61.182 65.000 0.00 0.00 0.00 5.52
6097 6565 0.189822 AGGTAGGAGATGAGGGAGCC 59.810 60.000 0.00 0.00 0.00 4.70
6098 6566 1.146982 AGAGGTAGGAGATGAGGGAGC 59.853 57.143 0.00 0.00 0.00 4.70
6099 6567 2.875296 CAGAGGTAGGAGATGAGGGAG 58.125 57.143 0.00 0.00 0.00 4.30
6100 6568 1.133325 GCAGAGGTAGGAGATGAGGGA 60.133 57.143 0.00 0.00 0.00 4.20
6101 6569 1.337118 GCAGAGGTAGGAGATGAGGG 58.663 60.000 0.00 0.00 0.00 4.30
6102 6570 1.962807 CTGCAGAGGTAGGAGATGAGG 59.037 57.143 8.42 0.00 0.00 3.86
6103 6571 2.942804 TCTGCAGAGGTAGGAGATGAG 58.057 52.381 13.74 0.00 0.00 2.90
6104 6572 3.295093 CTTCTGCAGAGGTAGGAGATGA 58.705 50.000 17.43 0.00 34.47 2.92
6105 6573 2.224018 GCTTCTGCAGAGGTAGGAGATG 60.224 54.545 24.88 2.06 34.47 2.90
6106 6574 2.038659 GCTTCTGCAGAGGTAGGAGAT 58.961 52.381 24.88 0.00 34.47 2.75
6107 6575 1.272704 TGCTTCTGCAGAGGTAGGAGA 60.273 52.381 24.88 4.08 45.31 3.71
6108 6576 1.189752 TGCTTCTGCAGAGGTAGGAG 58.810 55.000 24.88 15.72 45.31 3.69
6109 6577 3.381388 TGCTTCTGCAGAGGTAGGA 57.619 52.632 24.88 14.94 45.31 2.94
6119 6587 3.543665 AGAGATGAGGATTTGCTTCTGC 58.456 45.455 0.00 0.00 40.20 4.26
6120 6588 5.881443 AGAAAGAGATGAGGATTTGCTTCTG 59.119 40.000 0.00 0.00 0.00 3.02
6121 6589 6.064735 AGAAAGAGATGAGGATTTGCTTCT 57.935 37.500 0.00 0.00 0.00 2.85
6122 6590 5.296531 GGAGAAAGAGATGAGGATTTGCTTC 59.703 44.000 0.00 0.00 0.00 3.86
6123 6591 5.192176 GGAGAAAGAGATGAGGATTTGCTT 58.808 41.667 0.00 0.00 0.00 3.91
6124 6592 4.682859 CGGAGAAAGAGATGAGGATTTGCT 60.683 45.833 0.00 0.00 0.00 3.91
6125 6593 3.559242 CGGAGAAAGAGATGAGGATTTGC 59.441 47.826 0.00 0.00 0.00 3.68
6126 6594 4.125703 CCGGAGAAAGAGATGAGGATTTG 58.874 47.826 0.00 0.00 0.00 2.32
6127 6595 4.033709 TCCGGAGAAAGAGATGAGGATTT 58.966 43.478 0.00 0.00 0.00 2.17
6128 6596 3.386402 GTCCGGAGAAAGAGATGAGGATT 59.614 47.826 3.06 0.00 0.00 3.01
6129 6597 2.962421 GTCCGGAGAAAGAGATGAGGAT 59.038 50.000 3.06 0.00 0.00 3.24
6130 6598 2.379972 GTCCGGAGAAAGAGATGAGGA 58.620 52.381 3.06 0.00 0.00 3.71
6131 6599 2.880963 GTCCGGAGAAAGAGATGAGG 57.119 55.000 3.06 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.