Multiple sequence alignment - TraesCS4A01G059800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G059800 chr4A 100.000 4011 0 0 1 4011 56259475 56263485 0.000000e+00 7408.0
1 TraesCS4A01G059800 chr4A 89.205 176 14 3 3613 3783 56262999 56263174 8.730000e-52 215.0
2 TraesCS4A01G059800 chr4A 89.205 176 14 3 3525 3700 56263087 56263257 8.730000e-52 215.0
3 TraesCS4A01G059800 chr4A 94.643 112 6 0 3411 3522 575449303 575449192 1.480000e-39 174.0
4 TraesCS4A01G059800 chr4A 91.935 124 9 1 3407 3529 147569350 147569473 5.330000e-39 172.0
5 TraesCS4A01G059800 chr4A 87.629 97 12 0 3131 3227 327513034 327513130 3.280000e-21 113.0
6 TraesCS4A01G059800 chr4D 90.965 3088 166 49 404 3418 398902440 398905487 0.000000e+00 4052.0
7 TraesCS4A01G059800 chr4D 88.071 394 46 1 1 393 398901607 398902000 2.180000e-127 466.0
8 TraesCS4A01G059800 chr4D 88.997 309 19 4 3688 3996 398905682 398905975 6.330000e-98 368.0
9 TraesCS4A01G059800 chr4D 82.178 101 13 3 3600 3700 398905682 398905777 9.240000e-12 82.4
10 TraesCS4A01G059800 chr4B 92.177 2467 121 38 984 3418 491797098 491799524 0.000000e+00 3421.0
11 TraesCS4A01G059800 chr4B 88.669 353 18 4 3641 3993 491799563 491799893 1.040000e-110 411.0
12 TraesCS4A01G059800 chr4B 79.840 625 52 28 207 782 491796227 491796826 4.860000e-104 388.0
13 TraesCS4A01G059800 chr4B 77.070 314 70 2 93 405 575686199 575686511 3.180000e-41 180.0
14 TraesCS4A01G059800 chr4B 85.465 172 17 6 3528 3699 491799541 491799704 5.330000e-39 172.0
15 TraesCS4A01G059800 chr4B 89.516 124 11 2 768 891 491796846 491796967 5.370000e-34 156.0
16 TraesCS4A01G059800 chr1A 86.644 292 23 10 3114 3390 21198461 21198751 3.890000e-80 309.0
17 TraesCS4A01G059800 chr1A 92.308 117 9 0 3416 3532 348849970 348850086 2.480000e-37 167.0
18 TraesCS4A01G059800 chr1A 91.525 118 10 0 3406 3523 294516510 294516627 3.210000e-36 163.0
19 TraesCS4A01G059800 chr1A 76.667 210 38 6 225 432 479785626 479785826 5.480000e-19 106.0
20 TraesCS4A01G059800 chr2B 77.694 399 79 9 11 405 383067210 383067602 6.700000e-58 235.0
21 TraesCS4A01G059800 chr2B 81.250 272 35 11 3131 3389 474891944 474892212 5.250000e-49 206.0
22 TraesCS4A01G059800 chr1B 78.187 353 68 7 82 432 667755259 667754914 2.430000e-52 217.0
23 TraesCS4A01G059800 chr1B 79.498 239 43 6 18 254 167941978 167941744 8.920000e-37 165.0
24 TraesCS4A01G059800 chr6B 82.400 250 29 10 3152 3388 229137441 229137194 1.890000e-48 204.0
25 TraesCS4A01G059800 chr6B 80.812 271 37 11 3131 3388 438405773 438406041 8.790000e-47 198.0
26 TraesCS4A01G059800 chr6A 81.319 273 29 13 3131 3390 600912482 600912745 6.800000e-48 202.0
27 TraesCS4A01G059800 chr6D 77.326 344 74 4 5 346 82194121 82193780 2.440000e-47 200.0
28 TraesCS4A01G059800 chr5B 81.395 258 33 9 3145 3389 400933004 400933259 3.160000e-46 196.0
29 TraesCS4A01G059800 chr5B 76.584 363 69 12 79 432 469995839 469995484 6.850000e-43 185.0
30 TraesCS4A01G059800 chr7A 75.568 352 82 3 82 432 107545055 107545403 1.920000e-38 171.0
31 TraesCS4A01G059800 chr7A 93.694 111 7 0 3412 3522 547788956 547788846 2.480000e-37 167.0
32 TraesCS4A01G059800 chr5A 93.162 117 6 2 3416 3531 16500061 16499946 1.920000e-38 171.0
33 TraesCS4A01G059800 chr5A 89.474 133 8 5 3416 3543 455465755 455465624 3.210000e-36 163.0
34 TraesCS4A01G059800 chr2A 93.043 115 8 0 3416 3530 468295302 468295416 6.890000e-38 169.0
35 TraesCS4A01G059800 chr3A 89.062 128 12 2 3396 3522 264939811 264939937 1.490000e-34 158.0
36 TraesCS4A01G059800 chr3B 76.923 247 56 1 11 256 798438137 798437891 5.410000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G059800 chr4A 56259475 56263485 4010 False 2612.666667 7408 92.803333 1 4011 3 chr4A.!!$F3 4010
1 TraesCS4A01G059800 chr4D 398901607 398905975 4368 False 1242.100000 4052 87.552750 1 3996 4 chr4D.!!$F1 3995
2 TraesCS4A01G059800 chr4B 491796227 491799893 3666 False 909.600000 3421 87.133400 207 3993 5 chr4B.!!$F2 3786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.029300 CGGTGTTTGCTGTTCTGGTG 59.971 55.0 0.00 0.00 0.00 4.17 F
1949 2561 0.038067 TACAACGTGGTGACCATCGG 60.038 55.0 23.26 13.07 35.28 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2647 0.872388 GGCACCTGAAACCAACGTAG 59.128 55.0 0.0 0.0 0.0 3.51 R
3567 4205 0.445436 CGCAAGTGTCAAGCAGGATC 59.555 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.753262 GTCTAGCATGGTCGGATGGT 59.247 55.000 0.00 0.00 37.76 3.55
59 60 0.459237 GTGGATGTCTGTCTCTGGCG 60.459 60.000 0.00 0.00 0.00 5.69
60 61 1.142748 GGATGTCTGTCTCTGGCGG 59.857 63.158 0.00 0.00 0.00 6.13
66 67 0.034089 TCTGTCTCTGGCGGATCTCA 60.034 55.000 0.00 0.00 0.00 3.27
70 71 0.034089 TCTCTGGCGGATCTCACAGA 60.034 55.000 0.00 11.37 37.61 3.41
79 80 2.464865 GGATCTCACAGAATTCGGTCG 58.535 52.381 8.37 5.27 0.00 4.79
83 84 0.901114 TCACAGAATTCGGTCGGGGA 60.901 55.000 8.37 0.61 0.00 4.81
118 119 0.248825 CTGCTCAGATCCGGTCTTCG 60.249 60.000 0.00 0.00 34.00 3.79
128 129 3.528594 CGGTCTTCGGTCATCTACG 57.471 57.895 0.00 0.00 34.75 3.51
137 138 1.209128 GGTCATCTACGTTCATGCGG 58.791 55.000 0.00 0.00 35.98 5.69
142 143 0.245266 TCTACGTTCATGCGGCTTCA 59.755 50.000 0.00 0.00 35.98 3.02
166 167 5.659079 AGGTTGGATCCTTCCGATCTATATC 59.341 44.000 14.23 0.00 44.03 1.63
168 169 6.183360 GGTTGGATCCTTCCGATCTATATCTC 60.183 46.154 14.23 0.00 45.90 2.75
177 178 7.555914 CCTTCCGATCTATATCTCTCTTCATCA 59.444 40.741 0.00 0.00 0.00 3.07
184 185 1.550327 TCTCTCTTCATCAGCGGTGT 58.450 50.000 15.22 0.00 0.00 4.16
188 189 0.874390 TCTTCATCAGCGGTGTTTGC 59.126 50.000 15.22 0.00 0.00 3.68
198 199 0.029300 CGGTGTTTGCTGTTCTGGTG 59.971 55.000 0.00 0.00 0.00 4.17
211 212 0.396556 TCTGGTGCGCTGGTCCTATA 60.397 55.000 9.73 0.00 0.00 1.31
212 213 0.681733 CTGGTGCGCTGGTCCTATAT 59.318 55.000 9.73 0.00 0.00 0.86
214 215 0.679505 GGTGCGCTGGTCCTATATGA 59.320 55.000 9.73 0.00 0.00 2.15
233 234 4.897509 TGACCTTGACATGATGACTTCT 57.102 40.909 0.00 0.00 0.00 2.85
259 260 9.170734 TCGACTATCTACTACAACAAGTTATGT 57.829 33.333 0.00 0.00 46.82 2.29
265 266 2.264005 ACAACAAGTTATGTCCGGCA 57.736 45.000 0.00 0.00 42.99 5.69
280 281 3.319198 GCACCGACAAGGGAGGGA 61.319 66.667 0.00 0.00 46.96 4.20
288 289 2.203182 AAGGGAGGGACGGTGACA 59.797 61.111 0.00 0.00 0.00 3.58
289 290 1.913762 AAGGGAGGGACGGTGACAG 60.914 63.158 0.00 0.00 0.00 3.51
290 291 2.603776 GGGAGGGACGGTGACAGT 60.604 66.667 0.00 0.00 0.00 3.55
322 323 4.832248 TCGGCTCACTTCAATTCTTGTAT 58.168 39.130 0.00 0.00 0.00 2.29
325 326 6.876789 TCGGCTCACTTCAATTCTTGTATTTA 59.123 34.615 0.00 0.00 0.00 1.40
326 327 6.961554 CGGCTCACTTCAATTCTTGTATTTAC 59.038 38.462 0.00 0.00 0.00 2.01
356 357 5.992217 GGTGGTCTATGGATTTGACTGTATC 59.008 44.000 0.00 0.00 0.00 2.24
677 1148 1.679977 CCCGTAACAGGAGTCCCGA 60.680 63.158 5.25 0.00 37.58 5.14
704 1175 3.550842 GGGCACAGTCTTTGTCAAACATC 60.551 47.826 0.00 0.00 38.16 3.06
705 1176 3.550842 GGCACAGTCTTTGTCAAACATCC 60.551 47.826 0.00 0.00 38.16 3.51
813 1328 1.878522 GTCGGATACAGCACGGCAG 60.879 63.158 0.00 0.00 31.66 4.85
817 1332 0.601311 GGATACAGCACGGCAGATCC 60.601 60.000 0.00 4.08 0.00 3.36
821 1336 2.434884 AGCACGGCAGATCCAACG 60.435 61.111 0.00 0.00 34.01 4.10
823 1338 2.434884 CACGGCAGATCCAACGCT 60.435 61.111 0.00 0.00 34.01 5.07
860 1375 6.489361 TCCACGACCTATATAGAAACCTCTTC 59.511 42.308 11.53 0.00 32.70 2.87
869 1384 3.821421 AGAAACCTCTTCACGAACACT 57.179 42.857 0.00 0.00 0.00 3.55
891 1426 5.830991 ACTTTGCCATTTTAACTCACTGGTA 59.169 36.000 0.00 0.00 0.00 3.25
892 1427 6.493458 ACTTTGCCATTTTAACTCACTGGTAT 59.507 34.615 0.00 0.00 0.00 2.73
893 1428 7.668052 ACTTTGCCATTTTAACTCACTGGTATA 59.332 33.333 0.00 0.00 0.00 1.47
894 1429 7.624360 TTGCCATTTTAACTCACTGGTATAG 57.376 36.000 0.00 0.00 0.00 1.31
895 1430 6.119536 TGCCATTTTAACTCACTGGTATAGG 58.880 40.000 0.00 0.00 0.00 2.57
896 1431 5.008712 GCCATTTTAACTCACTGGTATAGGC 59.991 44.000 0.00 0.00 0.00 3.93
901 1436 0.598680 CTCACTGGTATAGGCGCTGC 60.599 60.000 7.64 0.00 0.00 5.25
920 1455 2.103143 CTCTCGTAGCGGGCTGTG 59.897 66.667 2.86 0.00 0.00 3.66
921 1456 2.675423 TCTCGTAGCGGGCTGTGT 60.675 61.111 2.86 0.00 0.00 3.72
922 1457 1.374343 CTCTCGTAGCGGGCTGTGTA 61.374 60.000 2.86 0.00 0.00 2.90
927 1462 0.674534 GTAGCGGGCTGTGTATAGCT 59.325 55.000 2.86 0.00 43.22 3.32
932 1467 0.657840 GGGCTGTGTATAGCTTTGCG 59.342 55.000 0.00 0.00 43.22 4.85
948 1483 3.118454 CGAACCATTGCTCGCCGT 61.118 61.111 0.00 0.00 0.00 5.68
949 1484 2.480555 GAACCATTGCTCGCCGTG 59.519 61.111 0.00 0.00 0.00 4.94
952 1487 1.577328 AACCATTGCTCGCCGTGAAG 61.577 55.000 0.00 0.00 0.00 3.02
953 1488 2.753966 CCATTGCTCGCCGTGAAGG 61.754 63.158 0.00 0.00 44.97 3.46
954 1489 2.436646 ATTGCTCGCCGTGAAGGG 60.437 61.111 0.00 0.00 41.48 3.95
955 1490 3.254024 ATTGCTCGCCGTGAAGGGT 62.254 57.895 0.00 0.00 41.48 4.34
970 1530 2.821991 AGGGTCGAGTTCTTGAACAG 57.178 50.000 14.80 8.85 0.00 3.16
1122 1701 1.779061 CGCGCTTCTCGTGCTTTTA 59.221 52.632 5.56 0.00 46.82 1.52
1193 1784 1.864711 CTCTTCTTGTTTCCGTTGCGA 59.135 47.619 0.00 0.00 0.00 5.10
1194 1785 1.864711 TCTTCTTGTTTCCGTTGCGAG 59.135 47.619 0.00 0.00 0.00 5.03
1195 1786 1.864711 CTTCTTGTTTCCGTTGCGAGA 59.135 47.619 0.00 0.00 0.00 4.04
1196 1787 1.497991 TCTTGTTTCCGTTGCGAGAG 58.502 50.000 0.00 0.00 0.00 3.20
1197 1788 1.067974 TCTTGTTTCCGTTGCGAGAGA 59.932 47.619 0.00 0.00 0.00 3.10
1249 1840 0.176449 CCATGTCCACGATGCTCTCA 59.824 55.000 0.00 0.00 0.00 3.27
1251 1842 0.897621 ATGTCCACGATGCTCTCACA 59.102 50.000 0.00 0.00 0.00 3.58
1255 1846 0.463204 CCACGATGCTCTCACATCCT 59.537 55.000 0.00 0.00 42.91 3.24
1404 2001 2.734723 CGACAGGTGCGTGAGTGG 60.735 66.667 0.00 0.00 0.00 4.00
1416 2013 2.045634 GAGTGGCATGCAGGCTCA 60.046 61.111 24.04 16.28 44.55 4.26
1455 2063 2.356382 TGGTTTCGATTCGTTTGCAGTT 59.644 40.909 5.89 0.00 0.00 3.16
1456 2064 3.181495 TGGTTTCGATTCGTTTGCAGTTT 60.181 39.130 5.89 0.00 0.00 2.66
1457 2065 3.179599 GGTTTCGATTCGTTTGCAGTTTG 59.820 43.478 5.89 0.00 0.00 2.93
1458 2066 3.953874 TTCGATTCGTTTGCAGTTTGA 57.046 38.095 5.89 0.00 0.00 2.69
1498 2106 1.082431 CATTTTGCGCCGTTCGTCA 60.082 52.632 4.18 0.00 41.07 4.35
1509 2117 1.931172 CCGTTCGTCACACTCAAACTT 59.069 47.619 0.00 0.00 0.00 2.66
1518 2126 4.033587 GTCACACTCAAACTTAACGCTTGA 59.966 41.667 0.00 0.00 0.00 3.02
1931 2543 2.277591 AACAGGCGCTGGGTACGTA 61.278 57.895 7.64 0.00 35.51 3.57
1932 2544 2.202703 CAGGCGCTGGGTACGTAC 60.203 66.667 17.56 17.56 0.00 3.67
1933 2545 2.677524 AGGCGCTGGGTACGTACA 60.678 61.111 26.02 6.87 0.00 2.90
1949 2561 0.038067 TACAACGTGGTGACCATCGG 60.038 55.000 23.26 13.07 35.28 4.18
1951 2563 1.301401 AACGTGGTGACCATCGGTG 60.301 57.895 23.26 9.43 35.25 4.94
1955 2567 0.949105 GTGGTGACCATCGGTGTGTC 60.949 60.000 7.94 9.55 35.25 3.67
2014 2631 1.890979 CATGGCTGATCTCCGCACC 60.891 63.158 0.00 0.00 0.00 5.01
2152 2769 5.298197 AGTATACCTTCATGATCTACGCG 57.702 43.478 3.53 3.53 0.00 6.01
2278 2895 3.055080 CTCCAACTACGCGCCGGTA 62.055 63.158 5.73 0.00 0.00 4.02
2281 2898 1.417206 CAACTACGCGCCGGTAAAC 59.583 57.895 5.73 0.00 0.00 2.01
2288 2905 0.247537 CGCGCCGGTAAACATCTTTC 60.248 55.000 1.90 0.00 0.00 2.62
2298 2915 4.456566 GGTAAACATCTTTCAGCCGGTAAA 59.543 41.667 1.90 0.71 0.00 2.01
2300 2917 6.316890 GGTAAACATCTTTCAGCCGGTAAATA 59.683 38.462 1.90 0.00 0.00 1.40
2303 2920 5.680619 ACATCTTTCAGCCGGTAAATATCA 58.319 37.500 1.90 0.00 0.00 2.15
2309 2926 4.556233 TCAGCCGGTAAATATCATCTTCG 58.444 43.478 1.90 0.00 0.00 3.79
2342 2959 0.179004 AAAATGTGACTGACCGGCCA 60.179 50.000 0.00 0.00 0.00 5.36
2600 3217 1.524355 GATCGATCAATGCACTCCACG 59.476 52.381 20.52 0.00 0.00 4.94
2604 3221 0.324614 ATCAATGCACTCCACGTCCA 59.675 50.000 0.00 0.00 0.00 4.02
2629 3246 1.898574 CTGTCCACCACCCAACTGC 60.899 63.158 0.00 0.00 0.00 4.40
2636 3253 2.125310 CACCCAACTGCGCCGATA 60.125 61.111 4.18 0.00 0.00 2.92
2664 3281 2.420022 GACTGAAGCTTGTGTTGTGTGT 59.580 45.455 2.10 0.00 0.00 3.72
2669 3286 2.436417 AGCTTGTGTTGTGTGTTGTCT 58.564 42.857 0.00 0.00 0.00 3.41
2670 3287 2.819608 AGCTTGTGTTGTGTGTTGTCTT 59.180 40.909 0.00 0.00 0.00 3.01
2671 3288 3.119849 AGCTTGTGTTGTGTGTTGTCTTC 60.120 43.478 0.00 0.00 0.00 2.87
2672 3289 3.119849 GCTTGTGTTGTGTGTTGTCTTCT 60.120 43.478 0.00 0.00 0.00 2.85
2673 3290 4.615912 GCTTGTGTTGTGTGTTGTCTTCTT 60.616 41.667 0.00 0.00 0.00 2.52
2679 3296 3.531538 TGTGTGTTGTCTTCTTCAGGTC 58.468 45.455 0.00 0.00 0.00 3.85
2710 3327 3.738482 GTCTCCATCGACGATCTCG 57.262 57.895 7.54 7.88 44.44 4.04
2818 3435 1.640428 TCTCATGCAATTCGTCCGTC 58.360 50.000 0.00 0.00 0.00 4.79
2849 3466 4.219288 GGCAAAAAGATCCAAGATGTCTGT 59.781 41.667 0.00 0.00 0.00 3.41
2938 3555 1.859080 GACACGTTGTCGAAGAAGCTT 59.141 47.619 0.00 0.00 39.69 3.74
2945 3562 2.400399 TGTCGAAGAAGCTTTACACGG 58.600 47.619 0.00 0.00 39.69 4.94
2986 3603 1.078848 CCTGGCGGAGGACAAGAAG 60.079 63.158 0.00 0.00 46.33 2.85
2998 3615 0.613777 ACAAGAAGGGATGGACGGTC 59.386 55.000 0.00 0.00 0.00 4.79
3011 3628 1.683790 GACGGTCGCGGTTGATTGAG 61.684 60.000 6.13 0.00 0.00 3.02
3069 3686 7.526142 AGCATTCATCAGCATTTCTTATCAT 57.474 32.000 0.00 0.00 0.00 2.45
3070 3687 7.371159 AGCATTCATCAGCATTTCTTATCATG 58.629 34.615 0.00 0.00 0.00 3.07
3247 3866 5.448089 GGTGTTCTTGTTGCTCGAACTAAAA 60.448 40.000 0.00 0.00 38.23 1.52
3270 3905 0.398318 AAGCTTCTCTGTGGGGTGAC 59.602 55.000 0.00 0.00 0.00 3.67
3291 3926 9.801873 GGTGACATTTTTGTGTAATATTATGCT 57.198 29.630 0.00 0.00 31.16 3.79
3317 3954 1.076995 AGGCTTGTAATTCGGCCCC 60.077 57.895 0.00 0.00 45.07 5.80
3336 3973 2.092375 CCCTGGCCTAGACCCTAAAAAG 60.092 54.545 3.32 0.00 0.00 2.27
3337 3974 2.844348 CCTGGCCTAGACCCTAAAAAGA 59.156 50.000 3.32 0.00 0.00 2.52
3380 4017 3.181470 TGGTAAGCCTTTTGCCTTGTTTC 60.181 43.478 0.00 0.00 42.71 2.78
3418 4056 9.508642 TGATGATATCTCGTGTTAGAAGATACT 57.491 33.333 3.98 0.00 0.00 2.12
3419 4057 9.982291 GATGATATCTCGTGTTAGAAGATACTC 57.018 37.037 3.98 0.00 0.00 2.59
3420 4058 8.325421 TGATATCTCGTGTTAGAAGATACTCC 57.675 38.462 3.98 0.00 0.00 3.85
3421 4059 7.390996 TGATATCTCGTGTTAGAAGATACTCCC 59.609 40.741 3.98 0.00 0.00 4.30
3422 4060 5.113446 TCTCGTGTTAGAAGATACTCCCT 57.887 43.478 0.00 0.00 0.00 4.20
3425 4063 4.334759 TCGTGTTAGAAGATACTCCCTTCG 59.665 45.833 0.00 0.00 43.44 3.79
3426 4064 4.096081 CGTGTTAGAAGATACTCCCTTCGT 59.904 45.833 0.00 0.00 43.44 3.85
3427 4065 5.392811 CGTGTTAGAAGATACTCCCTTCGTT 60.393 44.000 0.00 0.00 43.44 3.85
3428 4066 6.396450 GTGTTAGAAGATACTCCCTTCGTTT 58.604 40.000 0.00 0.00 43.44 3.60
3429 4067 6.530887 GTGTTAGAAGATACTCCCTTCGTTTC 59.469 42.308 0.00 0.00 43.44 2.78
3430 4068 6.209986 TGTTAGAAGATACTCCCTTCGTTTCA 59.790 38.462 0.00 0.00 43.44 2.69
3431 4069 5.740290 AGAAGATACTCCCTTCGTTTCAA 57.260 39.130 0.00 0.00 43.44 2.69
3432 4070 6.110411 AGAAGATACTCCCTTCGTTTCAAA 57.890 37.500 0.00 0.00 43.44 2.69
3433 4071 6.712276 AGAAGATACTCCCTTCGTTTCAAAT 58.288 36.000 0.00 0.00 43.44 2.32
3434 4072 7.168905 AGAAGATACTCCCTTCGTTTCAAATT 58.831 34.615 0.00 0.00 43.44 1.82
3435 4073 8.319146 AGAAGATACTCCCTTCGTTTCAAATTA 58.681 33.333 0.00 0.00 43.44 1.40
3436 4074 7.845066 AGATACTCCCTTCGTTTCAAATTAC 57.155 36.000 0.00 0.00 0.00 1.89
3437 4075 7.621796 AGATACTCCCTTCGTTTCAAATTACT 58.378 34.615 0.00 0.00 0.00 2.24
3438 4076 7.764901 AGATACTCCCTTCGTTTCAAATTACTC 59.235 37.037 0.00 0.00 0.00 2.59
3439 4077 4.689345 ACTCCCTTCGTTTCAAATTACTCG 59.311 41.667 0.00 0.00 0.00 4.18
3440 4078 4.634199 TCCCTTCGTTTCAAATTACTCGT 58.366 39.130 0.00 0.00 0.00 4.18
3441 4079 4.687483 TCCCTTCGTTTCAAATTACTCGTC 59.313 41.667 0.00 0.00 0.00 4.20
3442 4080 4.433805 CCCTTCGTTTCAAATTACTCGTCG 60.434 45.833 0.00 0.00 0.00 5.12
3443 4081 4.149396 CCTTCGTTTCAAATTACTCGTCGT 59.851 41.667 0.00 0.00 0.00 4.34
3444 4082 5.343058 CCTTCGTTTCAAATTACTCGTCGTA 59.657 40.000 0.00 0.00 0.00 3.43
3445 4083 5.980324 TCGTTTCAAATTACTCGTCGTAG 57.020 39.130 0.00 0.00 0.00 3.51
3446 4084 5.688823 TCGTTTCAAATTACTCGTCGTAGA 58.311 37.500 0.00 0.00 0.00 2.59
3447 4085 6.142139 TCGTTTCAAATTACTCGTCGTAGAA 58.858 36.000 0.00 0.00 39.69 2.10
3448 4086 6.636447 TCGTTTCAAATTACTCGTCGTAGAAA 59.364 34.615 0.00 0.00 39.69 2.52
3449 4087 7.326789 TCGTTTCAAATTACTCGTCGTAGAAAT 59.673 33.333 0.00 0.00 39.69 2.17
3450 4088 7.418801 CGTTTCAAATTACTCGTCGTAGAAATG 59.581 37.037 0.00 0.00 39.69 2.32
3451 4089 6.880822 TCAAATTACTCGTCGTAGAAATGG 57.119 37.500 0.00 0.00 39.69 3.16
3452 4090 6.623486 TCAAATTACTCGTCGTAGAAATGGA 58.377 36.000 0.00 0.00 39.69 3.41
3453 4091 7.262772 TCAAATTACTCGTCGTAGAAATGGAT 58.737 34.615 0.00 0.00 39.69 3.41
3454 4092 7.222031 TCAAATTACTCGTCGTAGAAATGGATG 59.778 37.037 0.00 0.00 39.69 3.51
3455 4093 5.571784 TTACTCGTCGTAGAAATGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
3456 4094 6.682423 TTACTCGTCGTAGAAATGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
3457 4095 5.769484 ACTCGTCGTAGAAATGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
3458 4096 5.759963 ACTCGTCGTAGAAATGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
3459 4097 5.531659 ACTCGTCGTAGAAATGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
3460 4098 6.709397 ACTCGTCGTAGAAATGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
3461 4099 7.095144 ACTCGTCGTAGAAATGGATGTATCTAG 60.095 40.741 0.00 0.00 39.69 2.43
3462 4100 6.932960 TCGTCGTAGAAATGGATGTATCTAGA 59.067 38.462 0.00 0.00 39.69 2.43
3463 4101 7.443272 TCGTCGTAGAAATGGATGTATCTAGAA 59.557 37.037 0.00 0.00 39.69 2.10
3464 4102 7.534578 CGTCGTAGAAATGGATGTATCTAGAAC 59.465 40.741 0.00 0.00 39.69 3.01
3465 4103 8.569641 GTCGTAGAAATGGATGTATCTAGAACT 58.430 37.037 0.00 0.00 39.69 3.01
3466 4104 9.788889 TCGTAGAAATGGATGTATCTAGAACTA 57.211 33.333 0.00 0.00 0.00 2.24
3497 4135 9.381033 ACATCTAGATACATACATACCTACGAC 57.619 37.037 4.54 0.00 0.00 4.34
3498 4136 9.379791 CATCTAGATACATACATACCTACGACA 57.620 37.037 4.54 0.00 0.00 4.35
3499 4137 9.955102 ATCTAGATACATACATACCTACGACAA 57.045 33.333 2.53 0.00 0.00 3.18
3500 4138 9.433153 TCTAGATACATACATACCTACGACAAG 57.567 37.037 0.00 0.00 0.00 3.16
3501 4139 9.217278 CTAGATACATACATACCTACGACAAGT 57.783 37.037 0.00 0.00 0.00 3.16
3503 4141 9.565090 AGATACATACATACCTACGACAAGTAA 57.435 33.333 0.00 0.00 34.45 2.24
3507 4145 7.859377 ACATACATACCTACGACAAGTAATTCG 59.141 37.037 0.00 0.00 41.14 3.34
3508 4146 5.585390 ACATACCTACGACAAGTAATTCGG 58.415 41.667 0.00 0.00 39.63 4.30
3509 4147 5.357878 ACATACCTACGACAAGTAATTCGGA 59.642 40.000 0.00 0.00 39.63 4.55
3510 4148 4.789012 ACCTACGACAAGTAATTCGGAA 57.211 40.909 0.00 0.00 39.63 4.30
3511 4149 5.334724 ACCTACGACAAGTAATTCGGAAT 57.665 39.130 0.00 0.00 39.63 3.01
3512 4150 5.107133 ACCTACGACAAGTAATTCGGAATG 58.893 41.667 3.59 0.00 39.63 2.67
3513 4151 5.105635 ACCTACGACAAGTAATTCGGAATGA 60.106 40.000 3.59 0.00 39.63 2.57
3514 4152 5.808540 CCTACGACAAGTAATTCGGAATGAA 59.191 40.000 3.59 0.00 39.63 2.57
3515 4153 5.779806 ACGACAAGTAATTCGGAATGAAG 57.220 39.130 3.59 0.00 40.65 3.02
3516 4154 4.630069 ACGACAAGTAATTCGGAATGAAGG 59.370 41.667 3.59 0.00 40.65 3.46
3517 4155 4.034048 CGACAAGTAATTCGGAATGAAGGG 59.966 45.833 3.59 0.00 40.65 3.95
3518 4156 5.174037 ACAAGTAATTCGGAATGAAGGGA 57.826 39.130 3.59 0.00 40.65 4.20
3519 4157 5.186198 ACAAGTAATTCGGAATGAAGGGAG 58.814 41.667 3.59 0.00 40.65 4.30
3520 4158 5.186198 CAAGTAATTCGGAATGAAGGGAGT 58.814 41.667 3.59 0.00 40.65 3.85
3521 4159 6.070424 ACAAGTAATTCGGAATGAAGGGAGTA 60.070 38.462 3.59 0.00 40.65 2.59
3522 4160 5.915175 AGTAATTCGGAATGAAGGGAGTAC 58.085 41.667 3.59 0.99 40.65 2.73
3523 4161 2.953466 TTCGGAATGAAGGGAGTACG 57.047 50.000 0.00 0.00 31.44 3.67
3524 4162 1.843368 TCGGAATGAAGGGAGTACGT 58.157 50.000 0.00 0.00 0.00 3.57
3525 4163 3.003394 TCGGAATGAAGGGAGTACGTA 57.997 47.619 0.00 0.00 0.00 3.57
3526 4164 3.559069 TCGGAATGAAGGGAGTACGTAT 58.441 45.455 0.00 0.00 0.00 3.06
3527 4165 3.567164 TCGGAATGAAGGGAGTACGTATC 59.433 47.826 0.00 0.00 0.00 2.24
3528 4166 3.317149 CGGAATGAAGGGAGTACGTATCA 59.683 47.826 0.00 0.00 0.00 2.15
3529 4167 4.202080 CGGAATGAAGGGAGTACGTATCAA 60.202 45.833 0.00 0.00 0.00 2.57
3530 4168 5.290386 GGAATGAAGGGAGTACGTATCAAG 58.710 45.833 0.00 0.00 0.00 3.02
3531 4169 5.163437 GGAATGAAGGGAGTACGTATCAAGT 60.163 44.000 0.00 0.00 0.00 3.16
3532 4170 5.934402 ATGAAGGGAGTACGTATCAAGTT 57.066 39.130 0.00 0.00 0.00 2.66
3533 4171 5.320549 TGAAGGGAGTACGTATCAAGTTC 57.679 43.478 0.00 1.09 0.00 3.01
3534 4172 4.768448 TGAAGGGAGTACGTATCAAGTTCA 59.232 41.667 0.00 3.74 0.00 3.18
3535 4173 5.244402 TGAAGGGAGTACGTATCAAGTTCAA 59.756 40.000 0.00 0.00 0.00 2.69
3536 4174 5.733620 AGGGAGTACGTATCAAGTTCAAA 57.266 39.130 0.00 0.00 0.00 2.69
3537 4175 6.295719 AGGGAGTACGTATCAAGTTCAAAT 57.704 37.500 0.00 0.00 0.00 2.32
3538 4176 6.708285 AGGGAGTACGTATCAAGTTCAAATT 58.292 36.000 0.00 0.00 0.00 1.82
3539 4177 7.166167 AGGGAGTACGTATCAAGTTCAAATTT 58.834 34.615 0.00 0.00 0.00 1.82
3540 4178 7.119262 AGGGAGTACGTATCAAGTTCAAATTTG 59.881 37.037 12.15 12.15 0.00 2.32
3541 4179 7.241376 GGAGTACGTATCAAGTTCAAATTTGG 58.759 38.462 17.90 1.88 0.00 3.28
3542 4180 7.141100 AGTACGTATCAAGTTCAAATTTGGG 57.859 36.000 17.90 3.85 0.00 4.12
3543 4181 4.805219 ACGTATCAAGTTCAAATTTGGGC 58.195 39.130 17.90 10.83 0.00 5.36
3544 4182 4.279671 ACGTATCAAGTTCAAATTTGGGCA 59.720 37.500 17.90 0.25 0.00 5.36
3545 4183 4.621034 CGTATCAAGTTCAAATTTGGGCAC 59.379 41.667 17.90 11.98 0.00 5.01
3546 4184 4.686191 ATCAAGTTCAAATTTGGGCACA 57.314 36.364 17.90 0.00 0.00 4.57
3547 4185 4.057406 TCAAGTTCAAATTTGGGCACAG 57.943 40.909 17.90 9.30 0.00 3.66
3548 4186 3.703556 TCAAGTTCAAATTTGGGCACAGA 59.296 39.130 17.90 11.04 0.00 3.41
3549 4187 4.161189 TCAAGTTCAAATTTGGGCACAGAA 59.839 37.500 17.90 0.46 0.00 3.02
3550 4188 4.751767 AGTTCAAATTTGGGCACAGAAA 57.248 36.364 17.90 0.00 0.00 2.52
3551 4189 4.696455 AGTTCAAATTTGGGCACAGAAAG 58.304 39.130 17.90 0.00 0.00 2.62
3552 4190 4.405358 AGTTCAAATTTGGGCACAGAAAGA 59.595 37.500 17.90 0.00 0.00 2.52
3553 4191 4.589216 TCAAATTTGGGCACAGAAAGAG 57.411 40.909 17.90 0.00 0.00 2.85
3554 4192 4.214310 TCAAATTTGGGCACAGAAAGAGA 58.786 39.130 17.90 0.00 0.00 3.10
3555 4193 4.279169 TCAAATTTGGGCACAGAAAGAGAG 59.721 41.667 17.90 0.00 0.00 3.20
3556 4194 3.795688 ATTTGGGCACAGAAAGAGAGA 57.204 42.857 0.00 0.00 0.00 3.10
3557 4195 3.576078 TTTGGGCACAGAAAGAGAGAA 57.424 42.857 0.00 0.00 0.00 2.87
3558 4196 2.847327 TGGGCACAGAAAGAGAGAAG 57.153 50.000 0.00 0.00 0.00 2.85
3559 4197 1.271054 TGGGCACAGAAAGAGAGAAGC 60.271 52.381 0.00 0.00 0.00 3.86
3560 4198 1.003003 GGGCACAGAAAGAGAGAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
3561 4199 2.234908 GGGCACAGAAAGAGAGAAGCTA 59.765 50.000 0.00 0.00 0.00 3.32
3562 4200 3.307059 GGGCACAGAAAGAGAGAAGCTAA 60.307 47.826 0.00 0.00 0.00 3.09
3563 4201 4.512484 GGCACAGAAAGAGAGAAGCTAAT 58.488 43.478 0.00 0.00 0.00 1.73
3564 4202 4.332268 GGCACAGAAAGAGAGAAGCTAATG 59.668 45.833 0.00 0.00 0.00 1.90
3565 4203 4.934602 GCACAGAAAGAGAGAAGCTAATGT 59.065 41.667 0.00 0.00 0.00 2.71
3566 4204 5.411053 GCACAGAAAGAGAGAAGCTAATGTT 59.589 40.000 0.00 0.00 0.00 2.71
3567 4205 6.620303 GCACAGAAAGAGAGAAGCTAATGTTG 60.620 42.308 0.00 0.00 0.00 3.33
3568 4206 6.648310 CACAGAAAGAGAGAAGCTAATGTTGA 59.352 38.462 0.00 0.00 0.00 3.18
3569 4207 7.333921 CACAGAAAGAGAGAAGCTAATGTTGAT 59.666 37.037 0.00 0.00 0.00 2.57
3570 4208 7.548780 ACAGAAAGAGAGAAGCTAATGTTGATC 59.451 37.037 0.00 0.00 0.00 2.92
3571 4209 7.011295 CAGAAAGAGAGAAGCTAATGTTGATCC 59.989 40.741 0.00 0.00 0.00 3.36
3572 4210 6.558488 AAGAGAGAAGCTAATGTTGATCCT 57.442 37.500 0.00 0.00 0.00 3.24
3573 4211 5.916318 AGAGAGAAGCTAATGTTGATCCTG 58.084 41.667 0.00 0.00 0.00 3.86
3574 4212 4.450053 AGAGAAGCTAATGTTGATCCTGC 58.550 43.478 0.00 0.00 0.00 4.85
3575 4213 4.163839 AGAGAAGCTAATGTTGATCCTGCT 59.836 41.667 0.00 0.00 0.00 4.24
3576 4214 4.853007 AGAAGCTAATGTTGATCCTGCTT 58.147 39.130 0.00 0.00 41.18 3.91
3577 4215 4.639310 AGAAGCTAATGTTGATCCTGCTTG 59.361 41.667 0.00 0.00 39.04 4.01
3578 4216 4.226427 AGCTAATGTTGATCCTGCTTGA 57.774 40.909 0.00 0.00 0.00 3.02
3579 4217 3.944015 AGCTAATGTTGATCCTGCTTGAC 59.056 43.478 0.00 0.00 0.00 3.18
3580 4218 3.691118 GCTAATGTTGATCCTGCTTGACA 59.309 43.478 0.00 0.00 0.00 3.58
3581 4219 4.437930 GCTAATGTTGATCCTGCTTGACAC 60.438 45.833 0.00 0.00 0.00 3.67
3582 4220 2.936919 TGTTGATCCTGCTTGACACT 57.063 45.000 0.00 0.00 0.00 3.55
3583 4221 3.213206 TGTTGATCCTGCTTGACACTT 57.787 42.857 0.00 0.00 0.00 3.16
3584 4222 2.880268 TGTTGATCCTGCTTGACACTTG 59.120 45.455 0.00 0.00 0.00 3.16
3585 4223 1.527034 TGATCCTGCTTGACACTTGC 58.473 50.000 0.00 0.00 0.00 4.01
3586 4224 0.445436 GATCCTGCTTGACACTTGCG 59.555 55.000 0.00 0.00 0.00 4.85
3587 4225 0.250467 ATCCTGCTTGACACTTGCGT 60.250 50.000 0.00 0.00 0.00 5.24
3588 4226 0.463654 TCCTGCTTGACACTTGCGTT 60.464 50.000 0.00 0.00 0.00 4.84
3589 4227 0.381801 CCTGCTTGACACTTGCGTTT 59.618 50.000 0.00 0.00 0.00 3.60
3590 4228 1.202290 CCTGCTTGACACTTGCGTTTT 60.202 47.619 0.00 0.00 0.00 2.43
3591 4229 2.529151 CTGCTTGACACTTGCGTTTTT 58.471 42.857 0.00 0.00 0.00 1.94
3592 4230 2.257894 TGCTTGACACTTGCGTTTTTG 58.742 42.857 0.00 0.00 0.00 2.44
3593 4231 1.006079 GCTTGACACTTGCGTTTTTGC 60.006 47.619 0.00 0.00 0.00 3.68
3594 4232 1.587946 CTTGACACTTGCGTTTTTGCC 59.412 47.619 0.00 0.00 0.00 4.52
3595 4233 0.528017 TGACACTTGCGTTTTTGCCA 59.472 45.000 0.00 0.00 0.00 4.92
3596 4234 1.067565 TGACACTTGCGTTTTTGCCAA 60.068 42.857 0.00 0.00 0.00 4.52
3597 4235 1.996191 GACACTTGCGTTTTTGCCAAA 59.004 42.857 0.00 0.00 0.00 3.28
3598 4236 1.729517 ACACTTGCGTTTTTGCCAAAC 59.270 42.857 0.00 0.00 0.00 2.93
3599 4237 1.728971 CACTTGCGTTTTTGCCAAACA 59.271 42.857 8.79 0.00 0.00 2.83
3600 4238 1.999024 ACTTGCGTTTTTGCCAAACAG 59.001 42.857 8.79 2.56 0.00 3.16
3601 4239 2.266554 CTTGCGTTTTTGCCAAACAGA 58.733 42.857 8.79 0.00 0.00 3.41
3602 4240 1.634702 TGCGTTTTTGCCAAACAGAC 58.365 45.000 8.79 0.00 0.00 3.51
3603 4241 0.927537 GCGTTTTTGCCAAACAGACC 59.072 50.000 8.79 0.00 0.00 3.85
3604 4242 1.196200 CGTTTTTGCCAAACAGACCG 58.804 50.000 8.79 0.00 0.00 4.79
3605 4243 1.468395 CGTTTTTGCCAAACAGACCGT 60.468 47.619 8.79 0.00 0.00 4.83
3606 4244 2.612604 GTTTTTGCCAAACAGACCGTT 58.387 42.857 0.00 0.00 40.50 4.44
3610 4248 1.464734 TGCCAAACAGACCGTTTTCA 58.535 45.000 0.00 0.00 45.79 2.69
3612 4250 2.428890 TGCCAAACAGACCGTTTTCATT 59.571 40.909 0.00 0.00 45.79 2.57
3629 4267 7.793427 CGTTTTCATTAGCAAGTTCAAATTTGG 59.207 33.333 17.90 2.88 0.00 3.28
3634 4272 2.170187 AGCAAGTTCAAATTTGGGCACA 59.830 40.909 17.90 0.00 0.00 4.57
3639 4277 4.696455 AGTTCAAATTTGGGCACAGAAAG 58.304 39.130 17.90 0.00 0.00 2.62
3643 4281 5.358922 TCAAATTTGGGCACAGAAAGAAAG 58.641 37.500 17.90 0.00 0.00 2.62
3644 4282 5.128499 TCAAATTTGGGCACAGAAAGAAAGA 59.872 36.000 17.90 0.00 0.00 2.52
3645 4283 5.612725 AATTTGGGCACAGAAAGAAAGAA 57.387 34.783 0.00 0.00 0.00 2.52
3686 4324 2.724174 GACACTTGCGTATTTGCCAAAC 59.276 45.455 0.00 0.00 0.00 2.93
3734 4481 0.672401 TGGGCACGCAAAGTAGCTAC 60.672 55.000 16.43 16.43 0.00 3.58
3740 4487 2.157668 CACGCAAAGTAGCTACTGTTGG 59.842 50.000 29.45 24.54 36.50 3.77
3767 4514 1.904287 TGACACCTACCATTTGCCAC 58.096 50.000 0.00 0.00 0.00 5.01
3843 4590 4.034858 CAGAGACATTTCATGGACATTCGG 59.965 45.833 0.00 0.00 33.60 4.30
3844 4591 3.282021 AGACATTTCATGGACATTCGGG 58.718 45.455 0.00 0.00 33.60 5.14
3851 4598 2.169769 TCATGGACATTCGGGGTACTTC 59.830 50.000 0.00 0.00 0.00 3.01
3893 4640 5.470098 ACGTTGTTGCTCTCTGACAATTTAT 59.530 36.000 0.00 0.00 35.91 1.40
3894 4641 6.017109 ACGTTGTTGCTCTCTGACAATTTATT 60.017 34.615 0.00 0.00 35.91 1.40
3895 4642 6.857964 CGTTGTTGCTCTCTGACAATTTATTT 59.142 34.615 0.00 0.00 35.91 1.40
3896 4643 8.015087 CGTTGTTGCTCTCTGACAATTTATTTA 58.985 33.333 0.00 0.00 35.91 1.40
3916 4663 3.185246 ACAGAGACCAACAAGTGTGAG 57.815 47.619 0.00 0.00 0.00 3.51
3927 4674 2.427095 ACAAGTGTGAGGTTTTTCTGGC 59.573 45.455 0.00 0.00 0.00 4.85
3929 4676 0.310854 GTGTGAGGTTTTTCTGGCGG 59.689 55.000 0.00 0.00 0.00 6.13
3930 4677 1.285950 GTGAGGTTTTTCTGGCGGC 59.714 57.895 0.00 0.00 0.00 6.53
3931 4678 2.258013 TGAGGTTTTTCTGGCGGCG 61.258 57.895 0.51 0.51 0.00 6.46
3932 4679 3.610791 GAGGTTTTTCTGGCGGCGC 62.611 63.158 26.17 26.17 0.00 6.53
3998 4745 2.212869 GCACATGCCACATGGTAATG 57.787 50.000 11.91 11.86 37.39 1.90
3999 4746 1.202440 GCACATGCCACATGGTAATGG 60.202 52.381 11.91 0.00 36.40 3.16
4000 4747 2.101783 CACATGCCACATGGTAATGGT 58.898 47.619 11.91 4.00 38.19 3.55
4001 4748 3.286353 CACATGCCACATGGTAATGGTA 58.714 45.455 11.91 0.00 38.19 3.25
4002 4749 3.316029 CACATGCCACATGGTAATGGTAG 59.684 47.826 11.91 6.02 38.19 3.18
4003 4750 2.727123 TGCCACATGGTAATGGTAGG 57.273 50.000 0.00 0.00 38.19 3.18
4004 4751 1.318576 GCCACATGGTAATGGTAGGC 58.681 55.000 0.00 0.00 40.63 3.93
4005 4752 1.409521 GCCACATGGTAATGGTAGGCA 60.410 52.381 0.00 0.00 43.84 4.75
4006 4753 2.575532 CCACATGGTAATGGTAGGCAG 58.424 52.381 0.00 0.00 38.19 4.85
4007 4754 2.575532 CACATGGTAATGGTAGGCAGG 58.424 52.381 0.00 0.00 38.19 4.85
4008 4755 2.172505 CACATGGTAATGGTAGGCAGGA 59.827 50.000 0.00 0.00 38.19 3.86
4009 4756 2.849943 ACATGGTAATGGTAGGCAGGAA 59.150 45.455 0.00 0.00 38.19 3.36
4010 4757 3.268334 ACATGGTAATGGTAGGCAGGAAA 59.732 43.478 0.00 0.00 38.19 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.136984 CTAGACGCACCACCGAGAC 59.863 63.158 0.00 0.00 0.00 3.36
7 8 2.202623 GCTAGACGCACCACCGAG 60.203 66.667 0.00 0.00 38.92 4.63
17 18 0.319040 CCATCCGACCATGCTAGACG 60.319 60.000 0.00 0.00 0.00 4.18
27 28 0.744414 CATCCACACACCATCCGACC 60.744 60.000 0.00 0.00 0.00 4.79
28 29 0.036388 ACATCCACACACCATCCGAC 60.036 55.000 0.00 0.00 0.00 4.79
37 38 1.620323 CCAGAGACAGACATCCACACA 59.380 52.381 0.00 0.00 0.00 3.72
59 60 2.464865 CGACCGAATTCTGTGAGATCC 58.535 52.381 7.29 0.00 0.00 3.36
60 61 2.464865 CCGACCGAATTCTGTGAGATC 58.535 52.381 7.29 0.00 0.00 2.75
66 67 0.909623 AATCCCCGACCGAATTCTGT 59.090 50.000 1.73 1.73 0.00 3.41
70 71 0.909623 AGACAATCCCCGACCGAATT 59.090 50.000 0.00 0.00 0.00 2.17
79 80 0.546598 ATCCACCGAAGACAATCCCC 59.453 55.000 0.00 0.00 0.00 4.81
83 84 1.556911 AGCAGATCCACCGAAGACAAT 59.443 47.619 0.00 0.00 0.00 2.71
118 119 1.209128 CCGCATGAACGTAGATGACC 58.791 55.000 10.19 0.00 0.00 4.02
119 120 0.577269 GCCGCATGAACGTAGATGAC 59.423 55.000 10.19 2.40 0.00 3.06
128 129 0.109597 CAACCTGAAGCCGCATGAAC 60.110 55.000 0.00 0.00 0.00 3.18
137 138 1.756430 GGAAGGATCCAACCTGAAGC 58.244 55.000 15.82 0.00 45.79 3.86
166 167 2.376808 AACACCGCTGATGAAGAGAG 57.623 50.000 0.00 0.00 0.00 3.20
168 169 1.135859 GCAAACACCGCTGATGAAGAG 60.136 52.381 0.00 0.00 0.00 2.85
177 178 1.447317 CCAGAACAGCAAACACCGCT 61.447 55.000 0.00 0.00 41.47 5.52
184 185 1.823470 AGCGCACCAGAACAGCAAA 60.823 52.632 11.47 0.00 0.00 3.68
188 189 2.281070 ACCAGCGCACCAGAACAG 60.281 61.111 11.47 0.00 0.00 3.16
211 212 5.426504 GAGAAGTCATCATGTCAAGGTCAT 58.573 41.667 0.00 0.00 0.00 3.06
212 213 4.619160 CGAGAAGTCATCATGTCAAGGTCA 60.619 45.833 0.00 0.00 0.00 4.02
214 215 3.511540 TCGAGAAGTCATCATGTCAAGGT 59.488 43.478 0.00 0.00 0.00 3.50
223 224 7.498443 TGTAGTAGATAGTCGAGAAGTCATCA 58.502 38.462 0.00 0.00 0.00 3.07
226 227 7.101700 TGTTGTAGTAGATAGTCGAGAAGTCA 58.898 38.462 0.00 0.00 0.00 3.41
233 234 9.170734 ACATAACTTGTTGTAGTAGATAGTCGA 57.829 33.333 0.00 0.00 33.74 4.20
265 266 2.995574 CGTCCCTCCCTTGTCGGT 60.996 66.667 0.00 0.00 0.00 4.69
322 323 2.696707 CCATAGACCACCTAGCGGTAAA 59.303 50.000 2.26 0.00 43.24 2.01
326 327 1.633774 ATCCATAGACCACCTAGCGG 58.366 55.000 0.00 0.00 0.00 5.52
397 425 9.869844 CGAAAATACTTCCATTCTGTATTCATC 57.130 33.333 0.00 0.00 36.31 2.92
399 427 7.282224 CCCGAAAATACTTCCATTCTGTATTCA 59.718 37.037 0.00 0.00 36.31 2.57
400 428 7.497909 TCCCGAAAATACTTCCATTCTGTATTC 59.502 37.037 0.00 0.00 36.31 1.75
401 429 7.343357 TCCCGAAAATACTTCCATTCTGTATT 58.657 34.615 0.00 0.00 38.17 1.89
402 430 6.895782 TCCCGAAAATACTTCCATTCTGTAT 58.104 36.000 0.00 0.00 0.00 2.29
405 433 6.509418 TTTCCCGAAAATACTTCCATTCTG 57.491 37.500 0.00 0.00 0.00 3.02
653 1124 0.690077 ACTCCTGTTACGGGGGATCC 60.690 60.000 18.29 1.92 33.17 3.36
677 1148 2.024414 GACAAAGACTGTGCCCTGTTT 58.976 47.619 0.00 0.00 38.84 2.83
797 1312 0.941463 GATCTGCCGTGCTGTATCCG 60.941 60.000 0.00 0.00 0.00 4.18
813 1328 2.368655 ATTTGGCAAAGCGTTGGATC 57.631 45.000 18.61 0.00 35.10 3.36
817 1332 2.061028 GGAGAATTTGGCAAAGCGTTG 58.939 47.619 18.61 8.11 37.83 4.10
821 1336 1.269448 TCGTGGAGAATTTGGCAAAGC 59.731 47.619 18.61 12.44 0.00 3.51
823 1338 1.611491 GGTCGTGGAGAATTTGGCAAA 59.389 47.619 16.01 16.01 0.00 3.68
860 1375 5.040635 AGTTAAAATGGCAAAGTGTTCGTG 58.959 37.500 0.00 0.00 0.00 4.35
869 1384 6.909550 ATACCAGTGAGTTAAAATGGCAAA 57.090 33.333 0.00 0.00 34.24 3.68
910 1445 0.541863 AAAGCTATACACAGCCCGCT 59.458 50.000 0.00 0.00 42.84 5.52
911 1446 0.657840 CAAAGCTATACACAGCCCGC 59.342 55.000 0.00 0.00 42.84 6.13
912 1447 0.657840 GCAAAGCTATACACAGCCCG 59.342 55.000 0.00 0.00 42.84 6.13
913 1448 0.657840 CGCAAAGCTATACACAGCCC 59.342 55.000 0.00 0.00 42.84 5.19
914 1449 1.651987 TCGCAAAGCTATACACAGCC 58.348 50.000 0.00 0.00 42.84 4.85
915 1450 2.223044 GGTTCGCAAAGCTATACACAGC 60.223 50.000 0.00 0.00 42.12 4.40
916 1451 3.000041 TGGTTCGCAAAGCTATACACAG 59.000 45.455 0.00 0.00 33.95 3.66
917 1452 3.046968 TGGTTCGCAAAGCTATACACA 57.953 42.857 0.00 0.00 33.95 3.72
920 1455 3.065371 AGCAATGGTTCGCAAAGCTATAC 59.935 43.478 0.00 0.00 33.95 1.47
921 1456 3.278574 AGCAATGGTTCGCAAAGCTATA 58.721 40.909 0.00 0.00 33.95 1.31
922 1457 2.094675 AGCAATGGTTCGCAAAGCTAT 58.905 42.857 0.00 0.00 33.95 2.97
932 1467 1.573829 TTCACGGCGAGCAATGGTTC 61.574 55.000 16.62 0.00 0.00 3.62
946 1481 1.000607 TCAAGAACTCGACCCTTCACG 60.001 52.381 0.00 0.00 0.00 4.35
947 1482 2.801111 GTTCAAGAACTCGACCCTTCAC 59.199 50.000 5.72 0.00 38.25 3.18
948 1483 2.432874 TGTTCAAGAACTCGACCCTTCA 59.567 45.455 13.49 0.00 41.67 3.02
949 1484 3.060602 CTGTTCAAGAACTCGACCCTTC 58.939 50.000 13.49 0.00 41.67 3.46
952 1487 1.149148 GCTGTTCAAGAACTCGACCC 58.851 55.000 13.49 0.00 41.67 4.46
953 1488 2.156343 AGCTGTTCAAGAACTCGACC 57.844 50.000 13.49 0.00 41.67 4.79
954 1489 3.303395 CCAAAGCTGTTCAAGAACTCGAC 60.303 47.826 13.49 1.87 41.67 4.20
955 1490 2.872245 CCAAAGCTGTTCAAGAACTCGA 59.128 45.455 13.49 0.00 41.67 4.04
1122 1701 2.100989 GTAGACGGGGATCTCAACTGT 58.899 52.381 0.00 0.00 0.00 3.55
1170 1761 3.120991 CGCAACGGAAACAAGAAGAGTAG 60.121 47.826 0.00 0.00 0.00 2.57
1193 1784 3.008485 ACGGGAAAATGCTCTTCTTCTCT 59.992 43.478 0.00 0.00 0.00 3.10
1194 1785 3.339141 ACGGGAAAATGCTCTTCTTCTC 58.661 45.455 0.00 0.00 0.00 2.87
1195 1786 3.008485 AGACGGGAAAATGCTCTTCTTCT 59.992 43.478 0.00 0.00 0.00 2.85
1196 1787 3.339141 AGACGGGAAAATGCTCTTCTTC 58.661 45.455 0.00 0.00 0.00 2.87
1197 1788 3.425162 AGACGGGAAAATGCTCTTCTT 57.575 42.857 0.00 0.00 0.00 2.52
1249 1840 2.228711 CCTCATGGAGGCAGGATGT 58.771 57.895 0.00 0.00 43.29 3.06
1269 1866 0.875059 TCCGATCGACCTCATCATCG 59.125 55.000 18.66 0.00 37.74 3.84
1272 1869 1.676529 GAGTTCCGATCGACCTCATCA 59.323 52.381 18.66 0.00 0.00 3.07
1404 2001 1.354506 GAACGATGAGCCTGCATGC 59.645 57.895 11.82 11.82 0.00 4.06
1416 2013 2.290071 ACCAATCACGGAAAGGAACGAT 60.290 45.455 0.00 0.00 0.00 3.73
1455 2063 2.320215 GCCATTGGCGATCGATCAA 58.680 52.632 24.40 21.07 39.62 2.57
1456 2064 4.047834 GCCATTGGCGATCGATCA 57.952 55.556 24.40 13.35 39.62 2.92
1729 2341 2.125106 CCCTGCCCGTAGTTGAGC 60.125 66.667 0.00 0.00 0.00 4.26
1931 2543 1.301401 CCGATGGTCACCACGTTGT 60.301 57.895 0.00 0.00 35.80 3.32
1932 2544 1.301401 ACCGATGGTCACCACGTTG 60.301 57.895 0.00 0.00 35.80 4.10
1933 2545 1.301401 CACCGATGGTCACCACGTT 60.301 57.895 0.00 0.00 35.80 3.99
1949 2561 4.510340 ACTCACGTGAATAAAAGGACACAC 59.490 41.667 20.49 0.00 33.56 3.82
1951 2563 4.610680 GCACTCACGTGAATAAAAGGACAC 60.611 45.833 20.49 0.00 43.97 3.67
1955 2567 3.810373 GTGCACTCACGTGAATAAAAGG 58.190 45.455 20.49 8.42 43.97 3.11
2014 2631 3.583276 TAGGACAGCGGTGGTTGCG 62.583 63.158 20.20 0.00 37.44 4.85
2028 2645 1.541670 GCACCTGAAACCAACGTAGGA 60.542 52.381 5.31 0.00 32.86 2.94
2030 2647 0.872388 GGCACCTGAAACCAACGTAG 59.128 55.000 0.00 0.00 0.00 3.51
2065 2682 4.840005 GGCCTGAGGTACAGCGCC 62.840 72.222 2.29 0.00 46.79 6.53
2134 2751 1.000607 GCCGCGTAGATCATGAAGGTA 60.001 52.381 4.92 0.00 0.00 3.08
2278 2895 6.601613 TGATATTTACCGGCTGAAAGATGTTT 59.398 34.615 0.00 0.00 34.07 2.83
2281 2898 6.652481 AGATGATATTTACCGGCTGAAAGATG 59.348 38.462 0.00 0.00 34.07 2.90
2288 2905 3.679980 CCGAAGATGATATTTACCGGCTG 59.320 47.826 0.00 0.00 0.00 4.85
2298 2915 5.940617 TGGAAATTCACCCGAAGATGATAT 58.059 37.500 0.00 0.00 33.74 1.63
2300 2917 4.080356 TCTGGAAATTCACCCGAAGATGAT 60.080 41.667 0.00 0.00 33.74 2.45
2303 2920 4.301072 TTCTGGAAATTCACCCGAAGAT 57.699 40.909 0.00 0.00 33.74 2.40
2309 2926 5.011023 AGTCACATTTTCTGGAAATTCACCC 59.989 40.000 0.00 0.00 35.79 4.61
2342 2959 4.261801 CCTGACGATGGGATAAAAACACT 58.738 43.478 0.00 0.00 0.00 3.55
2537 3154 3.847621 AGCTCGATGATGCTCCGA 58.152 55.556 0.00 0.00 33.90 4.55
2600 3217 1.300697 GTGGACAGTCGTGGTGGAC 60.301 63.158 0.00 0.00 37.19 4.02
2604 3221 2.803817 GGTGGTGGACAGTCGTGGT 61.804 63.158 0.00 0.00 0.00 4.16
2609 3226 0.535102 CAGTTGGGTGGTGGACAGTC 60.535 60.000 0.00 0.00 0.00 3.51
2629 3246 0.457166 TCAGTCCGTTGTTATCGGCG 60.457 55.000 0.00 0.00 46.49 6.46
2636 3253 1.670811 CACAAGCTTCAGTCCGTTGTT 59.329 47.619 0.00 0.00 0.00 2.83
2643 3260 2.420022 ACACACAACACAAGCTTCAGTC 59.580 45.455 0.00 0.00 0.00 3.51
2672 3289 2.261671 GGCGCTCTTCGACCTGAA 59.738 61.111 7.64 0.00 41.34 3.02
2679 3296 2.277628 GAGACGAGGCGCTCTTCG 60.278 66.667 21.49 21.49 34.56 3.79
2710 3327 0.874607 AACACTTCGTCGGCACTGAC 60.875 55.000 0.00 0.00 35.49 3.51
2797 3414 1.935873 ACGGACGAATTGCATGAGATG 59.064 47.619 0.00 0.00 0.00 2.90
2818 3435 1.993369 GATCTTTTTGCCCCGGCTCG 61.993 60.000 7.35 0.00 42.51 5.03
2849 3466 3.256558 CACATCTCAGCACTGAATCGAA 58.743 45.455 1.42 0.00 39.39 3.71
2924 3541 2.798283 CCGTGTAAAGCTTCTTCGACAA 59.202 45.455 0.00 0.00 0.00 3.18
2938 3555 1.208358 CGACGTCAGAGCCGTGTAA 59.792 57.895 17.16 0.00 38.92 2.41
2945 3562 0.665835 ATCTGGATCGACGTCAGAGC 59.334 55.000 17.16 15.51 40.32 4.09
2998 3615 2.225068 ATCCTACTCAATCAACCGCG 57.775 50.000 0.00 0.00 0.00 6.46
3011 3628 0.874607 CGCCCACGCTGTTATCCTAC 60.875 60.000 0.00 0.00 0.00 3.18
3069 3686 5.981088 ATTATTCACATTGGCAAGACACA 57.019 34.783 5.96 0.00 0.00 3.72
3070 3687 9.669353 CTATTATTATTCACATTGGCAAGACAC 57.331 33.333 5.96 0.00 0.00 3.67
3131 3748 3.703001 TCAGAGAAACCATCACCCTTC 57.297 47.619 0.00 0.00 0.00 3.46
3132 3749 3.875369 GCATCAGAGAAACCATCACCCTT 60.875 47.826 0.00 0.00 0.00 3.95
3137 3755 4.467438 TCAGTAGCATCAGAGAAACCATCA 59.533 41.667 0.00 0.00 0.00 3.07
3247 3866 0.695347 CCCCACAGAGAAGCTTCCTT 59.305 55.000 22.81 8.64 0.00 3.36
3291 3926 3.368427 CCGAATTACAAGCCTCACTCTCA 60.368 47.826 0.00 0.00 0.00 3.27
3317 3954 4.779993 ATCTTTTTAGGGTCTAGGCCAG 57.220 45.455 16.93 2.45 0.00 4.85
3352 3989 2.993220 GGCAAAAGGCTTACCATTTTCG 59.007 45.455 0.00 0.00 44.01 3.46
3418 4056 4.634199 ACGAGTAATTTGAAACGAAGGGA 58.366 39.130 0.00 0.00 0.00 4.20
3419 4057 4.433805 CGACGAGTAATTTGAAACGAAGGG 60.434 45.833 0.00 0.00 0.00 3.95
3420 4058 4.149396 ACGACGAGTAATTTGAAACGAAGG 59.851 41.667 0.00 0.00 0.00 3.46
3421 4059 5.246677 ACGACGAGTAATTTGAAACGAAG 57.753 39.130 0.00 0.00 0.00 3.79
3422 4060 6.142139 TCTACGACGAGTAATTTGAAACGAA 58.858 36.000 0.00 0.00 34.45 3.85
3425 4063 7.686938 CCATTTCTACGACGAGTAATTTGAAAC 59.313 37.037 0.00 0.00 32.37 2.78
3426 4064 7.599621 TCCATTTCTACGACGAGTAATTTGAAA 59.400 33.333 0.00 0.00 33.36 2.69
3427 4065 7.092079 TCCATTTCTACGACGAGTAATTTGAA 58.908 34.615 0.00 0.00 34.45 2.69
3428 4066 6.623486 TCCATTTCTACGACGAGTAATTTGA 58.377 36.000 0.00 0.00 34.45 2.69
3429 4067 6.880822 TCCATTTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.00 34.45 2.32
3430 4068 7.039882 ACATCCATTTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
3431 4069 6.570692 ACATCCATTTCTACGACGAGTAATT 58.429 36.000 0.00 0.00 34.45 1.40
3432 4070 6.145338 ACATCCATTTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
3433 4071 5.571784 ACATCCATTTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
3434 4072 6.709397 AGATACATCCATTTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
3435 4073 5.531659 AGATACATCCATTTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
3436 4074 6.003234 AGATACATCCATTTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
3437 4075 6.932960 TCTAGATACATCCATTTCTACGACGA 59.067 38.462 0.00 0.00 0.00 4.20
3438 4076 7.130303 TCTAGATACATCCATTTCTACGACG 57.870 40.000 0.00 0.00 0.00 5.12
3439 4077 8.569641 AGTTCTAGATACATCCATTTCTACGAC 58.430 37.037 0.00 0.00 0.00 4.34
3440 4078 8.693120 AGTTCTAGATACATCCATTTCTACGA 57.307 34.615 0.00 0.00 0.00 3.43
3471 4109 9.381033 GTCGTAGGTATGTATGTATCTAGATGT 57.619 37.037 15.79 4.15 0.00 3.06
3472 4110 9.379791 TGTCGTAGGTATGTATGTATCTAGATG 57.620 37.037 15.79 0.00 0.00 2.90
3473 4111 9.955102 TTGTCGTAGGTATGTATGTATCTAGAT 57.045 33.333 10.73 10.73 0.00 1.98
3474 4112 9.433153 CTTGTCGTAGGTATGTATGTATCTAGA 57.567 37.037 0.00 0.00 0.00 2.43
3475 4113 9.217278 ACTTGTCGTAGGTATGTATGTATCTAG 57.783 37.037 0.00 0.00 0.00 2.43
3477 4115 9.565090 TTACTTGTCGTAGGTATGTATGTATCT 57.435 33.333 0.00 0.00 0.00 1.98
3481 4119 7.859377 CGAATTACTTGTCGTAGGTATGTATGT 59.141 37.037 0.00 0.00 32.61 2.29
3482 4120 7.325338 CCGAATTACTTGTCGTAGGTATGTATG 59.675 40.741 0.00 0.00 35.48 2.39
3483 4121 7.229306 TCCGAATTACTTGTCGTAGGTATGTAT 59.771 37.037 0.00 0.00 35.48 2.29
3484 4122 6.542005 TCCGAATTACTTGTCGTAGGTATGTA 59.458 38.462 0.00 0.00 35.48 2.29
3485 4123 5.357878 TCCGAATTACTTGTCGTAGGTATGT 59.642 40.000 0.00 0.00 35.48 2.29
3486 4124 5.824429 TCCGAATTACTTGTCGTAGGTATG 58.176 41.667 0.00 0.00 35.48 2.39
3487 4125 6.455360 TTCCGAATTACTTGTCGTAGGTAT 57.545 37.500 0.00 0.00 35.48 2.73
3488 4126 5.895636 TTCCGAATTACTTGTCGTAGGTA 57.104 39.130 0.00 0.00 35.48 3.08
3489 4127 4.789012 TTCCGAATTACTTGTCGTAGGT 57.211 40.909 0.00 0.00 35.48 3.08
3490 4128 5.345702 TCATTCCGAATTACTTGTCGTAGG 58.654 41.667 0.00 0.00 35.48 3.18
3491 4129 6.019801 CCTTCATTCCGAATTACTTGTCGTAG 60.020 42.308 0.00 0.00 35.48 3.51
3492 4130 5.808540 CCTTCATTCCGAATTACTTGTCGTA 59.191 40.000 0.00 0.00 35.48 3.43
3493 4131 4.630069 CCTTCATTCCGAATTACTTGTCGT 59.370 41.667 0.00 0.00 35.48 4.34
3494 4132 4.034048 CCCTTCATTCCGAATTACTTGTCG 59.966 45.833 0.00 0.00 37.01 4.35
3495 4133 5.183228 TCCCTTCATTCCGAATTACTTGTC 58.817 41.667 0.00 0.00 31.69 3.18
3496 4134 5.174037 TCCCTTCATTCCGAATTACTTGT 57.826 39.130 0.00 0.00 31.69 3.16
3497 4135 5.186198 ACTCCCTTCATTCCGAATTACTTG 58.814 41.667 0.00 0.00 31.69 3.16
3498 4136 5.437191 ACTCCCTTCATTCCGAATTACTT 57.563 39.130 0.00 0.00 31.69 2.24
3499 4137 5.451520 CGTACTCCCTTCATTCCGAATTACT 60.452 44.000 0.00 0.00 31.69 2.24
3500 4138 4.743644 CGTACTCCCTTCATTCCGAATTAC 59.256 45.833 0.00 0.00 31.69 1.89
3501 4139 4.403432 ACGTACTCCCTTCATTCCGAATTA 59.597 41.667 0.00 0.00 31.69 1.40
3502 4140 3.197116 ACGTACTCCCTTCATTCCGAATT 59.803 43.478 0.00 0.00 31.69 2.17
3503 4141 2.764572 ACGTACTCCCTTCATTCCGAAT 59.235 45.455 0.00 0.00 31.69 3.34
3504 4142 2.173519 ACGTACTCCCTTCATTCCGAA 58.826 47.619 0.00 0.00 0.00 4.30
3505 4143 1.843368 ACGTACTCCCTTCATTCCGA 58.157 50.000 0.00 0.00 0.00 4.55
3506 4144 3.317149 TGATACGTACTCCCTTCATTCCG 59.683 47.826 0.00 0.00 0.00 4.30
3507 4145 4.931661 TGATACGTACTCCCTTCATTCC 57.068 45.455 0.00 0.00 0.00 3.01
3508 4146 5.903810 ACTTGATACGTACTCCCTTCATTC 58.096 41.667 0.00 0.00 0.00 2.67
3509 4147 5.934402 ACTTGATACGTACTCCCTTCATT 57.066 39.130 0.00 0.00 0.00 2.57
3510 4148 5.421056 TGAACTTGATACGTACTCCCTTCAT 59.579 40.000 0.00 0.00 0.00 2.57
3511 4149 4.768448 TGAACTTGATACGTACTCCCTTCA 59.232 41.667 0.00 0.17 0.00 3.02
3512 4150 5.320549 TGAACTTGATACGTACTCCCTTC 57.679 43.478 0.00 0.00 0.00 3.46
3513 4151 5.733620 TTGAACTTGATACGTACTCCCTT 57.266 39.130 0.00 0.00 0.00 3.95
3514 4152 5.733620 TTTGAACTTGATACGTACTCCCT 57.266 39.130 0.00 0.00 0.00 4.20
3515 4153 6.980051 AATTTGAACTTGATACGTACTCCC 57.020 37.500 0.00 0.00 0.00 4.30
3516 4154 7.241376 CCAAATTTGAACTTGATACGTACTCC 58.759 38.462 19.86 0.00 0.00 3.85
3517 4155 7.241376 CCCAAATTTGAACTTGATACGTACTC 58.759 38.462 19.86 0.00 0.00 2.59
3518 4156 6.349033 GCCCAAATTTGAACTTGATACGTACT 60.349 38.462 19.86 0.00 0.00 2.73
3519 4157 5.798434 GCCCAAATTTGAACTTGATACGTAC 59.202 40.000 19.86 0.00 0.00 3.67
3520 4158 5.473846 TGCCCAAATTTGAACTTGATACGTA 59.526 36.000 19.86 0.00 0.00 3.57
3521 4159 4.279671 TGCCCAAATTTGAACTTGATACGT 59.720 37.500 19.86 0.00 0.00 3.57
3522 4160 4.621034 GTGCCCAAATTTGAACTTGATACG 59.379 41.667 19.86 0.00 0.00 3.06
3523 4161 5.537188 TGTGCCCAAATTTGAACTTGATAC 58.463 37.500 19.86 7.34 0.00 2.24
3524 4162 5.538053 TCTGTGCCCAAATTTGAACTTGATA 59.462 36.000 19.86 0.00 0.00 2.15
3525 4163 4.344679 TCTGTGCCCAAATTTGAACTTGAT 59.655 37.500 19.86 0.00 0.00 2.57
3526 4164 3.703556 TCTGTGCCCAAATTTGAACTTGA 59.296 39.130 19.86 12.69 0.00 3.02
3527 4165 4.057406 TCTGTGCCCAAATTTGAACTTG 57.943 40.909 19.86 11.03 0.00 3.16
3528 4166 4.751767 TTCTGTGCCCAAATTTGAACTT 57.248 36.364 19.86 0.00 0.00 2.66
3529 4167 4.405358 TCTTTCTGTGCCCAAATTTGAACT 59.595 37.500 19.86 0.00 0.00 3.01
3530 4168 4.692228 TCTTTCTGTGCCCAAATTTGAAC 58.308 39.130 19.86 14.06 0.00 3.18
3531 4169 4.648762 TCTCTTTCTGTGCCCAAATTTGAA 59.351 37.500 19.86 1.01 0.00 2.69
3532 4170 4.214310 TCTCTTTCTGTGCCCAAATTTGA 58.786 39.130 19.86 0.00 0.00 2.69
3533 4171 4.279169 TCTCTCTTTCTGTGCCCAAATTTG 59.721 41.667 11.40 11.40 0.00 2.32
3534 4172 4.473444 TCTCTCTTTCTGTGCCCAAATTT 58.527 39.130 0.00 0.00 0.00 1.82
3535 4173 4.104383 TCTCTCTTTCTGTGCCCAAATT 57.896 40.909 0.00 0.00 0.00 1.82
3536 4174 3.795688 TCTCTCTTTCTGTGCCCAAAT 57.204 42.857 0.00 0.00 0.00 2.32
3537 4175 3.480470 CTTCTCTCTTTCTGTGCCCAAA 58.520 45.455 0.00 0.00 0.00 3.28
3538 4176 2.811873 GCTTCTCTCTTTCTGTGCCCAA 60.812 50.000 0.00 0.00 0.00 4.12
3539 4177 1.271054 GCTTCTCTCTTTCTGTGCCCA 60.271 52.381 0.00 0.00 0.00 5.36
3540 4178 1.003003 AGCTTCTCTCTTTCTGTGCCC 59.997 52.381 0.00 0.00 0.00 5.36
3541 4179 2.470983 AGCTTCTCTCTTTCTGTGCC 57.529 50.000 0.00 0.00 0.00 5.01
3542 4180 4.934602 ACATTAGCTTCTCTCTTTCTGTGC 59.065 41.667 0.00 0.00 0.00 4.57
3543 4181 6.648310 TCAACATTAGCTTCTCTCTTTCTGTG 59.352 38.462 0.00 0.00 0.00 3.66
3544 4182 6.763355 TCAACATTAGCTTCTCTCTTTCTGT 58.237 36.000 0.00 0.00 0.00 3.41
3545 4183 7.011295 GGATCAACATTAGCTTCTCTCTTTCTG 59.989 40.741 0.00 0.00 0.00 3.02
3546 4184 7.047271 GGATCAACATTAGCTTCTCTCTTTCT 58.953 38.462 0.00 0.00 0.00 2.52
3547 4185 7.011295 CAGGATCAACATTAGCTTCTCTCTTTC 59.989 40.741 0.00 0.00 0.00 2.62
3548 4186 6.822676 CAGGATCAACATTAGCTTCTCTCTTT 59.177 38.462 0.00 0.00 0.00 2.52
3549 4187 6.347696 CAGGATCAACATTAGCTTCTCTCTT 58.652 40.000 0.00 0.00 0.00 2.85
3550 4188 5.684552 GCAGGATCAACATTAGCTTCTCTCT 60.685 44.000 0.00 0.00 0.00 3.10
3551 4189 4.511082 GCAGGATCAACATTAGCTTCTCTC 59.489 45.833 0.00 0.00 0.00 3.20
3552 4190 4.163839 AGCAGGATCAACATTAGCTTCTCT 59.836 41.667 0.00 0.00 0.00 3.10
3553 4191 4.450053 AGCAGGATCAACATTAGCTTCTC 58.550 43.478 0.00 0.00 0.00 2.87
3554 4192 4.500499 AGCAGGATCAACATTAGCTTCT 57.500 40.909 0.00 0.00 0.00 2.85
3555 4193 4.637534 TCAAGCAGGATCAACATTAGCTTC 59.362 41.667 0.00 0.00 38.64 3.86
3556 4194 4.397417 GTCAAGCAGGATCAACATTAGCTT 59.603 41.667 0.00 0.00 41.05 3.74
3557 4195 3.944015 GTCAAGCAGGATCAACATTAGCT 59.056 43.478 0.00 0.00 0.00 3.32
3558 4196 3.691118 TGTCAAGCAGGATCAACATTAGC 59.309 43.478 0.00 0.00 0.00 3.09
3559 4197 4.940046 AGTGTCAAGCAGGATCAACATTAG 59.060 41.667 0.00 0.00 0.00 1.73
3560 4198 4.910195 AGTGTCAAGCAGGATCAACATTA 58.090 39.130 0.00 0.00 0.00 1.90
3561 4199 3.759581 AGTGTCAAGCAGGATCAACATT 58.240 40.909 0.00 0.00 0.00 2.71
3562 4200 3.430042 AGTGTCAAGCAGGATCAACAT 57.570 42.857 0.00 0.00 0.00 2.71
3563 4201 2.880268 CAAGTGTCAAGCAGGATCAACA 59.120 45.455 0.00 0.00 0.00 3.33
3564 4202 2.351157 GCAAGTGTCAAGCAGGATCAAC 60.351 50.000 0.00 0.00 0.00 3.18
3565 4203 1.881973 GCAAGTGTCAAGCAGGATCAA 59.118 47.619 0.00 0.00 0.00 2.57
3566 4204 1.527034 GCAAGTGTCAAGCAGGATCA 58.473 50.000 0.00 0.00 0.00 2.92
3567 4205 0.445436 CGCAAGTGTCAAGCAGGATC 59.555 55.000 0.00 0.00 0.00 3.36
3568 4206 2.548178 CGCAAGTGTCAAGCAGGAT 58.452 52.632 0.00 0.00 0.00 3.24
3569 4207 4.047834 CGCAAGTGTCAAGCAGGA 57.952 55.556 0.00 0.00 0.00 3.86
3582 4220 1.996191 GTCTGTTTGGCAAAAACGCAA 59.004 42.857 15.29 0.00 33.05 4.85
3583 4221 1.634702 GTCTGTTTGGCAAAAACGCA 58.365 45.000 15.29 7.50 33.05 5.24
3584 4222 0.927537 GGTCTGTTTGGCAAAAACGC 59.072 50.000 15.29 2.65 33.05 4.84
3585 4223 1.196200 CGGTCTGTTTGGCAAAAACG 58.804 50.000 15.29 10.24 33.05 3.60
3586 4224 2.287393 ACGGTCTGTTTGGCAAAAAC 57.713 45.000 15.29 12.68 0.00 2.43
3596 4234 4.578928 ACTTGCTAATGAAAACGGTCTGTT 59.421 37.500 0.00 0.00 44.59 3.16
3597 4235 4.134563 ACTTGCTAATGAAAACGGTCTGT 58.865 39.130 0.00 0.00 0.00 3.41
3598 4236 4.749245 ACTTGCTAATGAAAACGGTCTG 57.251 40.909 0.00 0.00 0.00 3.51
3599 4237 4.819630 TGAACTTGCTAATGAAAACGGTCT 59.180 37.500 0.00 0.00 0.00 3.85
3600 4238 5.103290 TGAACTTGCTAATGAAAACGGTC 57.897 39.130 0.00 0.00 0.00 4.79
3601 4239 5.508200 TTGAACTTGCTAATGAAAACGGT 57.492 34.783 0.00 0.00 0.00 4.83
3602 4240 7.406799 AATTTGAACTTGCTAATGAAAACGG 57.593 32.000 0.00 0.00 0.00 4.44
3603 4241 7.793427 CCAAATTTGAACTTGCTAATGAAAACG 59.207 33.333 19.86 0.00 0.00 3.60
3604 4242 8.069574 CCCAAATTTGAACTTGCTAATGAAAAC 58.930 33.333 19.86 0.00 0.00 2.43
3605 4243 7.255070 GCCCAAATTTGAACTTGCTAATGAAAA 60.255 33.333 19.86 0.00 0.00 2.29
3606 4244 6.204495 GCCCAAATTTGAACTTGCTAATGAAA 59.796 34.615 19.86 0.00 0.00 2.69
3607 4245 5.700373 GCCCAAATTTGAACTTGCTAATGAA 59.300 36.000 19.86 0.00 0.00 2.57
3610 4248 4.996758 GTGCCCAAATTTGAACTTGCTAAT 59.003 37.500 19.86 0.00 0.00 1.73
3612 4250 3.386078 TGTGCCCAAATTTGAACTTGCTA 59.614 39.130 19.86 5.33 0.00 3.49
3629 4267 5.048434 ACATTAGCTTCTTTCTTTCTGTGCC 60.048 40.000 0.00 0.00 0.00 5.01
3634 4272 7.887495 AGGATCAACATTAGCTTCTTTCTTTCT 59.113 33.333 0.00 0.00 0.00 2.52
3639 4277 5.356470 AGCAGGATCAACATTAGCTTCTTTC 59.644 40.000 0.00 0.00 0.00 2.62
3643 4281 4.637534 TCAAGCAGGATCAACATTAGCTTC 59.362 41.667 0.00 0.00 38.64 3.86
3644 4282 4.397417 GTCAAGCAGGATCAACATTAGCTT 59.603 41.667 0.00 0.00 41.05 3.74
3645 4283 3.944015 GTCAAGCAGGATCAACATTAGCT 59.056 43.478 0.00 0.00 0.00 3.32
3686 4324 4.749245 ACTTGCTAATGAAAACGGTCTG 57.251 40.909 0.00 0.00 0.00 3.51
3734 4481 2.154462 GGTGTCAATCAGGACCAACAG 58.846 52.381 0.00 0.00 36.97 3.16
3740 4487 3.914426 ATGGTAGGTGTCAATCAGGAC 57.086 47.619 0.00 0.00 38.29 3.85
3767 4514 6.051646 TGTCATGCATGAAAACGATCTATG 57.948 37.500 30.24 0.00 38.75 2.23
3809 4556 7.411912 CCATGAAATGTCTCTGTAACTGTAACG 60.412 40.741 0.00 0.00 44.81 3.18
3843 4590 5.825507 ACGTATCAAACTATCGAAGTACCC 58.174 41.667 0.00 0.00 37.50 3.69
3844 4591 6.968904 TGAACGTATCAAACTATCGAAGTACC 59.031 38.462 0.00 0.00 33.52 3.34
3893 4640 5.092554 TCACACTTGTTGGTCTCTGTAAA 57.907 39.130 0.00 0.00 0.00 2.01
3894 4641 4.442893 CCTCACACTTGTTGGTCTCTGTAA 60.443 45.833 0.00 0.00 0.00 2.41
3895 4642 3.069586 CCTCACACTTGTTGGTCTCTGTA 59.930 47.826 0.00 0.00 0.00 2.74
3896 4643 2.158900 CCTCACACTTGTTGGTCTCTGT 60.159 50.000 0.00 0.00 0.00 3.41
3937 4684 1.595109 GCTTGTTGTTTGGCCTGCC 60.595 57.895 3.32 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.