Multiple sequence alignment - TraesCS4A01G059100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G059100 chr4A 100.000 3386 0 0 1 3386 54407014 54403629 0.000000e+00 6253.0
1 TraesCS4A01G059100 chr4D 93.767 1845 80 12 550 2370 397158895 397157062 0.000000e+00 2737.0
2 TraesCS4A01G059100 chr4D 81.063 1204 168 25 1103 2272 488666096 488664919 0.000000e+00 905.0
3 TraesCS4A01G059100 chr4D 87.525 505 62 1 2883 3386 46414522 46414018 1.750000e-162 582.0
4 TraesCS4A01G059100 chr4D 85.391 486 26 15 1 456 397159413 397158943 2.380000e-126 462.0
5 TraesCS4A01G059100 chr4D 79.545 308 37 12 2612 2895 350523718 350523413 2.670000e-46 196.0
6 TraesCS4A01G059100 chr4D 97.500 40 1 0 2365 2404 397155692 397155653 6.060000e-08 69.4
7 TraesCS4A01G059100 chr4D 100.000 30 0 0 2340 2369 488664533 488664504 4.720000e-04 56.5
8 TraesCS4A01G059100 chr4B 91.997 1462 72 22 1179 2612 489294396 489292952 0.000000e+00 2010.0
9 TraesCS4A01G059100 chr4B 88.226 1240 70 29 1 1185 489295784 489294566 0.000000e+00 1411.0
10 TraesCS4A01G059100 chr4B 81.836 1013 144 19 1103 2101 626068871 626067885 0.000000e+00 815.0
11 TraesCS4A01G059100 chr4B 79.768 1206 155 35 1123 2268 639452147 639453323 0.000000e+00 793.0
12 TraesCS4A01G059100 chr4B 81.001 679 83 20 1175 1847 667343752 667344390 6.520000e-137 497.0
13 TraesCS4A01G059100 chr4B 84.390 410 46 9 1693 2087 667263801 667264207 1.470000e-103 387.0
14 TraesCS4A01G059100 chr4B 82.683 410 53 9 1693 2087 667278556 667278962 6.950000e-92 348.0
15 TraesCS4A01G059100 chr4B 82.439 410 54 9 1693 2087 667290595 667291001 3.240000e-90 342.0
16 TraesCS4A01G059100 chr4B 81.469 286 39 11 2612 2890 624870870 624870592 4.400000e-54 222.0
17 TraesCS4A01G059100 chr4B 80.142 282 47 5 2608 2885 637465202 637465478 5.730000e-48 202.0
18 TraesCS4A01G059100 chr4B 93.333 75 5 0 2281 2355 667345911 667345985 9.930000e-21 111.0
19 TraesCS4A01G059100 chr4B 92.000 75 6 0 2281 2355 639453418 639453492 4.620000e-19 106.0
20 TraesCS4A01G059100 chr4B 93.220 59 3 1 2340 2398 626067298 626067241 6.020000e-13 86.1
21 TraesCS4A01G059100 chr5A 82.983 999 132 16 1103 2090 670426159 670425188 0.000000e+00 869.0
22 TraesCS4A01G059100 chr5A 80.035 1142 135 42 1175 2272 706678440 706677348 0.000000e+00 760.0
23 TraesCS4A01G059100 chr5A 82.895 304 27 10 2608 2886 647359856 647359553 2.020000e-62 250.0
24 TraesCS4A01G059100 chr5A 83.908 261 37 4 2608 2863 476341037 476341297 9.390000e-61 244.0
25 TraesCS4A01G059100 chr5A 80.408 245 36 8 1686 1923 706705514 706705275 3.470000e-40 176.0
26 TraesCS4A01G059100 chr5A 90.667 75 6 1 2281 2355 706677260 706677187 7.730000e-17 99.0
27 TraesCS4A01G059100 chr5A 95.652 46 2 0 2340 2385 670424791 670424746 1.300000e-09 75.0
28 TraesCS4A01G059100 chr5A 100.000 32 0 0 496 527 596031931 596031900 3.650000e-05 60.2
29 TraesCS4A01G059100 chrUn 94.632 503 25 2 2885 3386 213183720 213184221 0.000000e+00 778.0
30 TraesCS4A01G059100 chrUn 80.966 683 89 19 1416 2090 30126390 30125741 1.400000e-138 503.0
31 TraesCS4A01G059100 chrUn 78.747 734 83 36 1686 2351 30131094 30130366 1.120000e-114 424.0
32 TraesCS4A01G059100 chr1A 94.632 503 25 2 2885 3386 6795985 6795484 0.000000e+00 778.0
33 TraesCS4A01G059100 chr1A 94.632 503 25 2 2885 3386 6809049 6808548 0.000000e+00 778.0
34 TraesCS4A01G059100 chr1A 94.632 503 25 2 2885 3386 6827822 6827321 0.000000e+00 778.0
35 TraesCS4A01G059100 chr1A 94.632 503 25 2 2885 3386 6842605 6842104 0.000000e+00 778.0
36 TraesCS4A01G059100 chr1D 94.146 410 13 6 1132 1532 394263776 394263369 6.210000e-172 614.0
37 TraesCS4A01G059100 chr1D 100.000 29 0 0 496 524 409045942 409045970 2.000000e-03 54.7
38 TraesCS4A01G059100 chr3B 86.166 506 65 5 2884 3386 585402983 585403486 2.970000e-150 542.0
39 TraesCS4A01G059100 chr3A 86.056 502 68 2 2886 3386 728441498 728440998 3.840000e-149 538.0
40 TraesCS4A01G059100 chr6B 85.750 400 49 4 2883 3282 624612924 624612533 1.880000e-112 416.0
41 TraesCS4A01G059100 chr6B 86.726 113 15 0 2773 2885 82263948 82263836 3.550000e-25 126.0
42 TraesCS4A01G059100 chr5B 84.462 251 34 4 2640 2885 616719966 616719716 3.380000e-60 243.0
43 TraesCS4A01G059100 chr1B 82.963 270 39 5 2608 2874 68241006 68241271 1.570000e-58 237.0
44 TraesCS4A01G059100 chr1B 81.227 277 41 7 2609 2881 677123546 677123815 2.650000e-51 213.0
45 TraesCS4A01G059100 chr6D 90.909 165 13 2 2612 2774 263436573 263436409 1.580000e-53 220.0
46 TraesCS4A01G059100 chr6D 85.870 92 11 2 2447 2536 9819084 9818993 2.780000e-16 97.1
47 TraesCS4A01G059100 chr6A 90.476 168 13 3 2599 2763 87481128 87481295 5.690000e-53 219.0
48 TraesCS4A01G059100 chr2A 87.069 116 13 2 2775 2890 309647662 309647775 2.740000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G059100 chr4A 54403629 54407014 3385 True 6253.000000 6253 100.000000 1 3386 1 chr4A.!!$R1 3385
1 TraesCS4A01G059100 chr4D 397155653 397159413 3760 True 1089.466667 2737 92.219333 1 2404 3 chr4D.!!$R3 2403
2 TraesCS4A01G059100 chr4D 46414018 46414522 504 True 582.000000 582 87.525000 2883 3386 1 chr4D.!!$R1 503
3 TraesCS4A01G059100 chr4D 488664504 488666096 1592 True 480.750000 905 90.531500 1103 2369 2 chr4D.!!$R4 1266
4 TraesCS4A01G059100 chr4B 489292952 489295784 2832 True 1710.500000 2010 90.111500 1 2612 2 chr4B.!!$R2 2611
5 TraesCS4A01G059100 chr4B 626067241 626068871 1630 True 450.550000 815 87.528000 1103 2398 2 chr4B.!!$R3 1295
6 TraesCS4A01G059100 chr4B 639452147 639453492 1345 False 449.500000 793 85.884000 1123 2355 2 chr4B.!!$F5 1232
7 TraesCS4A01G059100 chr4B 667343752 667345985 2233 False 304.000000 497 87.167000 1175 2355 2 chr4B.!!$F6 1180
8 TraesCS4A01G059100 chr5A 670424746 670426159 1413 True 472.000000 869 89.317500 1103 2385 2 chr5A.!!$R4 1282
9 TraesCS4A01G059100 chr5A 706677187 706678440 1253 True 429.500000 760 85.351000 1175 2355 2 chr5A.!!$R5 1180
10 TraesCS4A01G059100 chrUn 213183720 213184221 501 False 778.000000 778 94.632000 2885 3386 1 chrUn.!!$F1 501
11 TraesCS4A01G059100 chrUn 30125741 30131094 5353 True 463.500000 503 79.856500 1416 2351 2 chrUn.!!$R1 935
12 TraesCS4A01G059100 chr1A 6795484 6795985 501 True 778.000000 778 94.632000 2885 3386 1 chr1A.!!$R1 501
13 TraesCS4A01G059100 chr1A 6808548 6809049 501 True 778.000000 778 94.632000 2885 3386 1 chr1A.!!$R2 501
14 TraesCS4A01G059100 chr1A 6827321 6827822 501 True 778.000000 778 94.632000 2885 3386 1 chr1A.!!$R3 501
15 TraesCS4A01G059100 chr1A 6842104 6842605 501 True 778.000000 778 94.632000 2885 3386 1 chr1A.!!$R4 501
16 TraesCS4A01G059100 chr3B 585402983 585403486 503 False 542.000000 542 86.166000 2884 3386 1 chr3B.!!$F1 502
17 TraesCS4A01G059100 chr3A 728440998 728441498 500 True 538.000000 538 86.056000 2886 3386 1 chr3A.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 843 0.163788 CATGGAGCACGTGAACGAAC 59.836 55.0 22.23 0.0 43.02 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2753 8914 0.032678 AAGTCATCATAGGCGCCTCG 59.967 55.0 36.73 25.72 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 35 4.451096 GGAACAGTTGTCTTCTATTTGCGA 59.549 41.667 0.00 0.00 0.00 5.10
58 62 5.473504 TGATTTGAAGCTACTTTCTTGGGAC 59.526 40.000 0.00 0.00 0.00 4.46
59 63 4.706842 TTGAAGCTACTTTCTTGGGACT 57.293 40.909 0.00 0.00 0.00 3.85
61 65 5.048846 TGAAGCTACTTTCTTGGGACTTT 57.951 39.130 0.00 0.00 0.00 2.66
62 66 5.063880 TGAAGCTACTTTCTTGGGACTTTC 58.936 41.667 0.00 0.00 0.00 2.62
63 67 4.984146 AGCTACTTTCTTGGGACTTTCT 57.016 40.909 0.00 0.00 0.00 2.52
64 68 5.311844 AGCTACTTTCTTGGGACTTTCTT 57.688 39.130 0.00 0.00 0.00 2.52
66 70 4.216472 GCTACTTTCTTGGGACTTTCTTGG 59.784 45.833 0.00 0.00 0.00 3.61
67 71 3.566351 ACTTTCTTGGGACTTTCTTGGG 58.434 45.455 0.00 0.00 0.00 4.12
156 160 6.208599 TGGATCTCCTAACCAATTGACAAAAC 59.791 38.462 7.12 0.00 36.82 2.43
168 172 8.735315 ACCAATTGACAAAACGATATGACATTA 58.265 29.630 7.12 0.00 0.00 1.90
169 173 9.225201 CCAATTGACAAAACGATATGACATTAG 57.775 33.333 7.12 0.00 0.00 1.73
244 248 1.978617 CTTGCCCTCCAACGCCATT 60.979 57.895 0.00 0.00 0.00 3.16
303 312 0.249699 TACTGTGCACACCCTTGACG 60.250 55.000 17.42 6.15 0.00 4.35
367 376 5.139435 TCATTCCACAAACAAACACACAA 57.861 34.783 0.00 0.00 0.00 3.33
373 382 3.487574 CACAAACAAACACACAAACACGT 59.512 39.130 0.00 0.00 0.00 4.49
376 385 4.752661 AACAAACACACAAACACGTACT 57.247 36.364 0.00 0.00 0.00 2.73
377 386 4.073169 ACAAACACACAAACACGTACTG 57.927 40.909 0.00 0.00 0.00 2.74
380 389 2.702261 ACACACAAACACGTACTGGTT 58.298 42.857 0.00 0.00 0.00 3.67
456 491 6.645415 CCGTGGAGAAATATAAGAGCGTTTAT 59.355 38.462 2.15 2.15 0.00 1.40
469 504 7.845066 AAGAGCGTTTATAAACTCCCTTTAG 57.155 36.000 22.57 8.51 36.77 1.85
471 506 6.817140 AGAGCGTTTATAAACTCCCTTTAGTG 59.183 38.462 22.57 7.30 36.77 2.74
472 507 6.704310 AGCGTTTATAAACTCCCTTTAGTGA 58.296 36.000 22.57 0.00 36.77 3.41
473 508 7.336396 AGCGTTTATAAACTCCCTTTAGTGAT 58.664 34.615 22.57 2.88 36.77 3.06
475 510 7.494952 GCGTTTATAAACTCCCTTTAGTGATCT 59.505 37.037 22.57 0.00 36.77 2.75
484 519 6.127675 ACTCCCTTTAGTGATCTAAACGACTC 60.128 42.308 0.00 0.00 40.05 3.36
486 521 6.209986 TCCCTTTAGTGATCTAAACGACTCAA 59.790 38.462 0.00 0.00 40.05 3.02
487 522 7.042335 CCCTTTAGTGATCTAAACGACTCAAT 58.958 38.462 0.00 0.00 40.05 2.57
488 523 7.222999 CCCTTTAGTGATCTAAACGACTCAATC 59.777 40.741 0.00 0.00 40.05 2.67
493 528 8.458573 AGTGATCTAAACGACTCAATCTATCT 57.541 34.615 0.00 0.00 0.00 1.98
494 529 9.562408 AGTGATCTAAACGACTCAATCTATCTA 57.438 33.333 0.00 0.00 0.00 1.98
501 536 7.854934 AACGACTCAATCTATCTATAAACGC 57.145 36.000 0.00 0.00 0.00 4.84
502 537 7.204496 ACGACTCAATCTATCTATAAACGCT 57.796 36.000 0.00 0.00 0.00 5.07
504 539 8.136165 ACGACTCAATCTATCTATAAACGCTTT 58.864 33.333 0.00 0.00 0.00 3.51
527 578 4.674281 ATATTTCTTCACGGAGGGAGTC 57.326 45.455 0.00 0.00 0.00 3.36
665 733 3.204382 ACAAATCCTCCGGGTGGAATTAT 59.796 43.478 20.81 6.42 45.87 1.28
699 767 1.160137 GGAGCTGTGATGTCAACACC 58.840 55.000 10.41 0.00 37.45 4.16
773 841 2.027073 GCATGGAGCACGTGAACGA 61.027 57.895 22.23 9.61 44.79 3.85
774 842 1.565156 GCATGGAGCACGTGAACGAA 61.565 55.000 22.23 0.00 44.79 3.85
775 843 0.163788 CATGGAGCACGTGAACGAAC 59.836 55.000 22.23 0.00 43.02 3.95
791 859 1.192534 CGAACGCCTTCTTCTCAACAC 59.807 52.381 0.00 0.00 0.00 3.32
853 921 0.878523 TGCTTGTACACACGACAGCC 60.879 55.000 11.43 0.00 0.00 4.85
899 971 3.935828 GAGAACAGAGGTTTGAGGTATGC 59.064 47.826 0.00 0.00 37.36 3.14
915 987 3.381590 GGTATGCCTTGACCAGAAATTCC 59.618 47.826 0.00 0.00 35.65 3.01
988 1060 2.050144 TCAAGCTCTTCTTCTGTGGGT 58.950 47.619 0.00 0.00 31.27 4.51
994 1067 3.367910 GCTCTTCTTCTGTGGGTAGTGAG 60.368 52.174 0.00 0.00 0.00 3.51
1011 1084 1.009829 GAGCAGTAATGGAGCAACCG 58.990 55.000 0.00 0.00 42.61 4.44
1057 1130 3.886123 AGCGCATTTGGTCCTAATTACT 58.114 40.909 11.47 0.00 0.00 2.24
1091 1171 7.648908 TCTGAAAGTTAACATGCTGTGAATTTG 59.351 33.333 8.61 0.00 33.76 2.32
1333 1613 2.552585 GAACCTGCCGTTCGGATCGA 62.553 60.000 15.69 0.00 41.51 3.59
1431 4774 0.671781 CTGGCACCCTGAACTTCTCG 60.672 60.000 0.00 0.00 0.00 4.04
1575 4939 1.958205 GCAGCAGCAGTTCGTGTCT 60.958 57.895 0.00 0.00 41.58 3.41
1601 4965 4.227134 CATCGTCCCCGGCCTCAG 62.227 72.222 0.00 0.00 33.95 3.35
1767 5157 2.266055 GAGGACAAGGTGAGGGCG 59.734 66.667 0.00 0.00 0.00 6.13
2132 6531 5.758570 GCTTGCAAGAAAATAAGCTTCTG 57.241 39.130 30.39 0.00 41.60 3.02
2143 6566 5.961396 AATAAGCTTCTGATGCATGATCC 57.039 39.130 16.56 0.00 0.00 3.36
2186 6613 0.176680 TGCAGATCGAAGAGGGCTTC 59.823 55.000 0.00 0.00 43.63 3.86
2309 7031 4.196626 TGGTAACGGTGTCCATTTCTAG 57.803 45.455 1.26 0.00 42.51 2.43
2430 8588 4.788925 ATGTTCTAATTCGGATTCCCCA 57.211 40.909 0.00 0.00 34.14 4.96
2432 8590 3.264706 TGTTCTAATTCGGATTCCCCACA 59.735 43.478 0.00 0.00 34.14 4.17
2433 8591 4.263550 TGTTCTAATTCGGATTCCCCACAA 60.264 41.667 0.00 0.00 34.14 3.33
2435 8593 4.523083 TCTAATTCGGATTCCCCACAAAG 58.477 43.478 0.00 0.00 34.14 2.77
2437 8595 2.194201 TTCGGATTCCCCACAAAGAC 57.806 50.000 0.00 0.00 34.14 3.01
2440 8598 2.158593 TCGGATTCCCCACAAAGACAAA 60.159 45.455 0.00 0.00 34.14 2.83
2441 8599 2.030274 CGGATTCCCCACAAAGACAAAC 60.030 50.000 0.00 0.00 34.14 2.93
2442 8600 2.962421 GGATTCCCCACAAAGACAAACA 59.038 45.455 0.00 0.00 34.14 2.83
2443 8601 3.243737 GGATTCCCCACAAAGACAAACAC 60.244 47.826 0.00 0.00 34.14 3.32
2445 8603 3.094484 TCCCCACAAAGACAAACACTT 57.906 42.857 0.00 0.00 0.00 3.16
2446 8604 3.020984 TCCCCACAAAGACAAACACTTC 58.979 45.455 0.00 0.00 0.00 3.01
2447 8605 3.023832 CCCCACAAAGACAAACACTTCT 58.976 45.455 0.00 0.00 0.00 2.85
2448 8606 3.447229 CCCCACAAAGACAAACACTTCTT 59.553 43.478 0.00 0.00 33.32 2.52
2449 8607 4.440112 CCCCACAAAGACAAACACTTCTTC 60.440 45.833 0.00 0.00 30.55 2.87
2450 8608 4.342772 CCACAAAGACAAACACTTCTTCG 58.657 43.478 0.00 0.00 30.55 3.79
2451 8609 4.342772 CACAAAGACAAACACTTCTTCGG 58.657 43.478 0.00 0.00 30.55 4.30
2452 8610 4.007659 ACAAAGACAAACACTTCTTCGGT 58.992 39.130 0.00 0.00 30.55 4.69
2454 8612 5.064325 ACAAAGACAAACACTTCTTCGGTAC 59.936 40.000 0.00 0.00 30.55 3.34
2468 8629 2.259012 TCGGTACACCCCTAAACACAT 58.741 47.619 0.00 0.00 0.00 3.21
2473 8634 4.392754 GGTACACCCCTAAACACATAAACG 59.607 45.833 0.00 0.00 0.00 3.60
2474 8635 4.354893 ACACCCCTAAACACATAAACGA 57.645 40.909 0.00 0.00 0.00 3.85
2475 8636 4.067192 ACACCCCTAAACACATAAACGAC 58.933 43.478 0.00 0.00 0.00 4.34
2492 8653 6.481434 AAACGACTTAGATTAGCCCATACT 57.519 37.500 0.00 0.00 0.00 2.12
2507 8668 5.825151 AGCCCATACTTCTTCATAAGAAAGC 59.175 40.000 3.88 1.64 46.13 3.51
2515 8676 5.413969 TCTTCATAAGAAAGCGCATGATG 57.586 39.130 11.47 11.04 33.83 3.07
2519 8680 1.825090 AAGAAAGCGCATGATGGTCA 58.175 45.000 11.47 0.00 0.00 4.02
2520 8681 2.048444 AGAAAGCGCATGATGGTCAT 57.952 45.000 11.47 0.00 37.65 3.06
2527 8688 5.618056 AGCGCATGATGGTCATATTTTAG 57.382 39.130 11.47 0.00 34.28 1.85
2538 8699 9.508567 GATGGTCATATTTTAGAAACTCTTTGC 57.491 33.333 0.00 0.00 0.00 3.68
2542 8703 6.882140 TCATATTTTAGAAACTCTTTGCCCGA 59.118 34.615 0.00 0.00 0.00 5.14
2543 8704 7.556275 TCATATTTTAGAAACTCTTTGCCCGAT 59.444 33.333 0.00 0.00 0.00 4.18
2549 8710 5.930135 AGAAACTCTTTGCCCGATGTATAT 58.070 37.500 0.00 0.00 0.00 0.86
2551 8712 4.689612 ACTCTTTGCCCGATGTATATGT 57.310 40.909 0.00 0.00 0.00 2.29
2554 8715 7.476540 ACTCTTTGCCCGATGTATATGTATA 57.523 36.000 0.00 0.00 0.00 1.47
2555 8716 7.321153 ACTCTTTGCCCGATGTATATGTATAC 58.679 38.462 0.00 0.00 39.14 1.47
2573 8734 0.966920 ACACTGTACAGAGAACGGGG 59.033 55.000 29.30 3.09 32.62 5.73
2578 8739 1.534476 TACAGAGAACGGGGGCACA 60.534 57.895 0.00 0.00 0.00 4.57
2603 8764 1.525995 CGACAACCAACCAGCCACT 60.526 57.895 0.00 0.00 0.00 4.00
2609 8770 0.537371 ACCAACCAGCCACTGTTAGC 60.537 55.000 0.00 0.00 0.00 3.09
2610 8771 0.537143 CCAACCAGCCACTGTTAGCA 60.537 55.000 2.76 0.00 0.00 3.49
2613 8774 1.318576 ACCAGCCACTGTTAGCAAAC 58.681 50.000 2.76 0.00 36.07 2.93
2614 8775 0.598065 CCAGCCACTGTTAGCAAACC 59.402 55.000 2.76 0.00 34.49 3.27
2615 8776 1.317613 CAGCCACTGTTAGCAAACCA 58.682 50.000 2.76 0.00 34.49 3.67
2616 8777 1.680735 CAGCCACTGTTAGCAAACCAA 59.319 47.619 2.76 0.00 34.49 3.67
2617 8778 1.681264 AGCCACTGTTAGCAAACCAAC 59.319 47.619 2.76 0.00 34.49 3.77
2618 8779 1.407258 GCCACTGTTAGCAAACCAACA 59.593 47.619 0.00 0.00 34.49 3.33
2619 8780 2.035832 GCCACTGTTAGCAAACCAACAT 59.964 45.455 0.00 0.00 34.34 2.71
2620 8781 3.641648 CCACTGTTAGCAAACCAACATG 58.358 45.455 0.00 0.00 34.34 3.21
2621 8782 3.068024 CCACTGTTAGCAAACCAACATGT 59.932 43.478 0.00 0.00 34.34 3.21
2622 8783 4.043750 CACTGTTAGCAAACCAACATGTG 58.956 43.478 0.00 0.00 34.34 3.21
2623 8784 3.951037 ACTGTTAGCAAACCAACATGTGA 59.049 39.130 0.00 0.00 34.34 3.58
2624 8785 4.584325 ACTGTTAGCAAACCAACATGTGAT 59.416 37.500 0.00 0.00 34.34 3.06
2625 8786 5.068987 ACTGTTAGCAAACCAACATGTGATT 59.931 36.000 0.00 0.00 34.34 2.57
2626 8787 5.288015 TGTTAGCAAACCAACATGTGATTG 58.712 37.500 0.00 4.06 34.49 2.67
2638 8799 7.488187 CAACATGTGATTGGATAGTTAGAGG 57.512 40.000 0.00 0.00 0.00 3.69
2639 8800 6.179906 ACATGTGATTGGATAGTTAGAGGG 57.820 41.667 0.00 0.00 0.00 4.30
2640 8801 5.905331 ACATGTGATTGGATAGTTAGAGGGA 59.095 40.000 0.00 0.00 0.00 4.20
2641 8802 5.871396 TGTGATTGGATAGTTAGAGGGAC 57.129 43.478 0.00 0.00 0.00 4.46
2642 8803 5.277250 TGTGATTGGATAGTTAGAGGGACA 58.723 41.667 0.00 0.00 0.00 4.02
2643 8804 5.363868 TGTGATTGGATAGTTAGAGGGACAG 59.636 44.000 0.00 0.00 0.00 3.51
2644 8805 5.364157 GTGATTGGATAGTTAGAGGGACAGT 59.636 44.000 0.00 0.00 0.00 3.55
2645 8806 5.363868 TGATTGGATAGTTAGAGGGACAGTG 59.636 44.000 0.00 0.00 0.00 3.66
2646 8807 3.643237 TGGATAGTTAGAGGGACAGTGG 58.357 50.000 0.00 0.00 0.00 4.00
2647 8808 3.012502 TGGATAGTTAGAGGGACAGTGGT 59.987 47.826 0.00 0.00 0.00 4.16
2648 8809 4.231195 TGGATAGTTAGAGGGACAGTGGTA 59.769 45.833 0.00 0.00 0.00 3.25
2649 8810 5.103215 TGGATAGTTAGAGGGACAGTGGTAT 60.103 44.000 0.00 0.00 0.00 2.73
2650 8811 5.477637 GGATAGTTAGAGGGACAGTGGTATC 59.522 48.000 0.00 0.00 0.00 2.24
2651 8812 3.644335 AGTTAGAGGGACAGTGGTATCC 58.356 50.000 0.00 0.00 0.00 2.59
2656 8817 1.527370 GGACAGTGGTATCCCCAGC 59.473 63.158 0.00 0.00 46.45 4.85
2657 8818 1.527370 GACAGTGGTATCCCCAGCC 59.473 63.158 0.00 0.00 46.45 4.85
2658 8819 1.984288 GACAGTGGTATCCCCAGCCC 61.984 65.000 0.00 0.00 46.45 5.19
2659 8820 2.000701 CAGTGGTATCCCCAGCCCA 61.001 63.158 0.00 0.00 46.45 5.36
2660 8821 2.001269 AGTGGTATCCCCAGCCCAC 61.001 63.158 0.00 0.00 46.45 4.61
2661 8822 2.001269 GTGGTATCCCCAGCCCACT 61.001 63.158 0.00 0.00 46.45 4.00
2662 8823 0.693092 GTGGTATCCCCAGCCCACTA 60.693 60.000 0.00 0.00 46.45 2.74
2663 8824 0.399949 TGGTATCCCCAGCCCACTAG 60.400 60.000 0.00 0.00 38.72 2.57
2664 8825 1.128188 GGTATCCCCAGCCCACTAGG 61.128 65.000 0.00 0.00 39.47 3.02
2665 8826 0.105142 GTATCCCCAGCCCACTAGGA 60.105 60.000 0.00 0.00 38.24 2.94
2666 8827 0.874594 TATCCCCAGCCCACTAGGAT 59.125 55.000 0.00 0.00 40.02 3.24
2667 8828 0.474660 ATCCCCAGCCCACTAGGATC 60.475 60.000 0.00 0.00 34.58 3.36
2668 8829 1.384502 CCCCAGCCCACTAGGATCA 60.385 63.158 0.00 0.00 38.24 2.92
2669 8830 0.988145 CCCCAGCCCACTAGGATCAA 60.988 60.000 0.00 0.00 38.24 2.57
2670 8831 0.471617 CCCAGCCCACTAGGATCAAG 59.528 60.000 0.00 0.00 38.24 3.02
2671 8832 1.207791 CCAGCCCACTAGGATCAAGT 58.792 55.000 0.00 0.00 38.24 3.16
2672 8833 1.139853 CCAGCCCACTAGGATCAAGTC 59.860 57.143 0.00 0.00 38.24 3.01
2682 8843 2.500509 GGATCAAGTCCTAGTGCTCG 57.499 55.000 0.00 0.00 44.16 5.03
2683 8844 1.537135 GGATCAAGTCCTAGTGCTCGC 60.537 57.143 0.00 0.00 44.16 5.03
2684 8845 1.135139 GATCAAGTCCTAGTGCTCGCA 59.865 52.381 0.00 0.00 0.00 5.10
2685 8846 1.186200 TCAAGTCCTAGTGCTCGCAT 58.814 50.000 0.00 0.00 0.00 4.73
2686 8847 1.550524 TCAAGTCCTAGTGCTCGCATT 59.449 47.619 0.00 0.00 0.00 3.56
2687 8848 2.758423 TCAAGTCCTAGTGCTCGCATTA 59.242 45.455 0.00 0.00 0.00 1.90
2688 8849 3.384789 TCAAGTCCTAGTGCTCGCATTAT 59.615 43.478 0.00 0.00 0.00 1.28
2689 8850 4.122776 CAAGTCCTAGTGCTCGCATTATT 58.877 43.478 0.00 0.00 0.00 1.40
2690 8851 3.983741 AGTCCTAGTGCTCGCATTATTC 58.016 45.455 0.00 0.00 0.00 1.75
2691 8852 3.060602 GTCCTAGTGCTCGCATTATTCC 58.939 50.000 0.00 0.00 0.00 3.01
2692 8853 2.965831 TCCTAGTGCTCGCATTATTCCT 59.034 45.455 0.00 0.00 0.00 3.36
2693 8854 3.062763 CCTAGTGCTCGCATTATTCCTG 58.937 50.000 0.00 0.00 0.00 3.86
2694 8855 1.959042 AGTGCTCGCATTATTCCTGG 58.041 50.000 0.00 0.00 0.00 4.45
2695 8856 1.486310 AGTGCTCGCATTATTCCTGGA 59.514 47.619 0.00 0.00 0.00 3.86
2696 8857 2.105477 AGTGCTCGCATTATTCCTGGAT 59.895 45.455 0.00 0.00 0.00 3.41
2697 8858 2.880890 GTGCTCGCATTATTCCTGGATT 59.119 45.455 0.00 0.00 0.00 3.01
2698 8859 3.316308 GTGCTCGCATTATTCCTGGATTT 59.684 43.478 0.00 0.00 0.00 2.17
2699 8860 4.515191 GTGCTCGCATTATTCCTGGATTTA 59.485 41.667 0.00 0.00 0.00 1.40
2700 8861 5.182001 GTGCTCGCATTATTCCTGGATTTAT 59.818 40.000 0.00 0.00 0.00 1.40
2701 8862 5.769662 TGCTCGCATTATTCCTGGATTTATT 59.230 36.000 0.00 0.00 0.00 1.40
2702 8863 6.265196 TGCTCGCATTATTCCTGGATTTATTT 59.735 34.615 0.00 0.00 0.00 1.40
2703 8864 6.803807 GCTCGCATTATTCCTGGATTTATTTC 59.196 38.462 0.00 0.00 0.00 2.17
2704 8865 7.522073 GCTCGCATTATTCCTGGATTTATTTCA 60.522 37.037 0.00 0.00 0.00 2.69
2705 8866 7.874940 TCGCATTATTCCTGGATTTATTTCAG 58.125 34.615 0.00 0.00 0.00 3.02
2706 8867 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
2715 8876 5.901552 TGGATTTATTTCAGGATTTTCGGC 58.098 37.500 0.00 0.00 0.00 5.54
2716 8877 4.976116 GGATTTATTTCAGGATTTTCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
2717 8878 5.220970 GGATTTATTTCAGGATTTTCGGCGA 60.221 40.000 4.99 4.99 0.00 5.54
2718 8879 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
2719 8880 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
2720 8881 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
2721 8882 0.392327 TCAGGATTTTCGGCGATGCA 60.392 50.000 11.76 0.00 0.00 3.96
2722 8883 0.248215 CAGGATTTTCGGCGATGCAC 60.248 55.000 11.76 3.20 0.00 4.57
2723 8884 0.392998 AGGATTTTCGGCGATGCACT 60.393 50.000 11.76 2.95 0.00 4.40
2724 8885 0.451783 GGATTTTCGGCGATGCACTT 59.548 50.000 11.76 0.00 0.00 3.16
2725 8886 1.135402 GGATTTTCGGCGATGCACTTT 60.135 47.619 11.76 0.00 0.00 2.66
2726 8887 2.177173 GATTTTCGGCGATGCACTTTC 58.823 47.619 11.76 0.00 0.00 2.62
2727 8888 0.947960 TTTTCGGCGATGCACTTTCA 59.052 45.000 11.76 0.00 0.00 2.69
2728 8889 0.516877 TTTCGGCGATGCACTTTCAG 59.483 50.000 11.76 0.00 0.00 3.02
2729 8890 0.602638 TTCGGCGATGCACTTTCAGT 60.603 50.000 11.76 0.00 0.00 3.41
2731 8892 1.503542 GGCGATGCACTTTCAGTGG 59.496 57.895 6.05 0.00 46.01 4.00
2738 8899 3.558931 TGCACTTTCAGTGGAAGAAGA 57.441 42.857 18.45 0.00 43.66 2.87
2739 8900 3.206150 TGCACTTTCAGTGGAAGAAGAC 58.794 45.455 18.45 4.63 43.66 3.01
2740 8901 2.221981 GCACTTTCAGTGGAAGAAGACG 59.778 50.000 18.45 2.20 46.01 4.18
2741 8902 3.458189 CACTTTCAGTGGAAGAAGACGT 58.542 45.455 18.45 0.00 42.35 4.34
2742 8903 3.871594 CACTTTCAGTGGAAGAAGACGTT 59.128 43.478 18.45 0.00 42.35 3.99
2743 8904 4.025647 CACTTTCAGTGGAAGAAGACGTTC 60.026 45.833 18.45 0.00 42.35 3.95
2744 8905 2.814280 TCAGTGGAAGAAGACGTTCC 57.186 50.000 0.00 0.00 43.45 3.62
2745 8906 1.000607 TCAGTGGAAGAAGACGTTCCG 60.001 52.381 0.00 0.00 45.75 4.30
2746 8907 1.038280 AGTGGAAGAAGACGTTCCGT 58.962 50.000 0.00 0.00 45.75 4.69
2754 8915 3.132202 GACGTTCCGTCGACAACG 58.868 61.111 28.90 28.90 46.56 4.10
2764 8925 2.104331 CGACAACGAGGCGCCTAT 59.896 61.111 32.97 18.97 45.03 2.57
2765 8926 2.230940 CGACAACGAGGCGCCTATG 61.231 63.158 32.97 28.76 45.03 2.23
2766 8927 1.141019 GACAACGAGGCGCCTATGA 59.859 57.895 32.97 0.00 0.00 2.15
2767 8928 0.249489 GACAACGAGGCGCCTATGAT 60.249 55.000 32.97 17.32 0.00 2.45
2768 8929 0.530650 ACAACGAGGCGCCTATGATG 60.531 55.000 32.97 29.02 0.00 3.07
2769 8930 0.249447 CAACGAGGCGCCTATGATGA 60.249 55.000 32.97 0.00 0.00 2.92
2770 8931 0.249489 AACGAGGCGCCTATGATGAC 60.249 55.000 32.97 14.51 0.00 3.06
2771 8932 1.109920 ACGAGGCGCCTATGATGACT 61.110 55.000 32.97 3.02 0.00 3.41
2772 8933 0.032678 CGAGGCGCCTATGATGACTT 59.967 55.000 32.97 2.04 0.00 3.01
2773 8934 1.789506 GAGGCGCCTATGATGACTTC 58.210 55.000 32.97 9.38 0.00 3.01
2774 8935 0.032678 AGGCGCCTATGATGACTTCG 59.967 55.000 31.86 0.00 0.00 3.79
2775 8936 0.946221 GGCGCCTATGATGACTTCGG 60.946 60.000 22.15 0.00 0.00 4.30
2776 8937 1.560860 GCGCCTATGATGACTTCGGC 61.561 60.000 0.00 0.00 0.00 5.54
2777 8938 0.032678 CGCCTATGATGACTTCGGCT 59.967 55.000 0.00 0.00 35.46 5.52
2778 8939 1.789506 GCCTATGATGACTTCGGCTC 58.210 55.000 0.00 0.00 34.80 4.70
2779 8940 1.069204 GCCTATGATGACTTCGGCTCA 59.931 52.381 0.00 0.00 34.80 4.26
2780 8941 2.865670 GCCTATGATGACTTCGGCTCAG 60.866 54.545 0.00 0.00 34.80 3.35
2781 8942 2.363680 CCTATGATGACTTCGGCTCAGT 59.636 50.000 0.00 0.00 0.00 3.41
2782 8943 3.181471 CCTATGATGACTTCGGCTCAGTT 60.181 47.826 0.00 0.00 0.00 3.16
2783 8944 2.839486 TGATGACTTCGGCTCAGTTT 57.161 45.000 0.00 0.00 0.00 2.66
2784 8945 2.688507 TGATGACTTCGGCTCAGTTTC 58.311 47.619 0.00 0.00 0.00 2.78
2785 8946 2.300152 TGATGACTTCGGCTCAGTTTCT 59.700 45.455 0.00 0.00 0.00 2.52
2786 8947 2.440539 TGACTTCGGCTCAGTTTCTC 57.559 50.000 0.00 0.00 0.00 2.87
2787 8948 1.335964 TGACTTCGGCTCAGTTTCTCG 60.336 52.381 0.00 0.00 0.00 4.04
2788 8949 0.959553 ACTTCGGCTCAGTTTCTCGA 59.040 50.000 0.00 0.00 0.00 4.04
2789 8950 1.340248 ACTTCGGCTCAGTTTCTCGAA 59.660 47.619 0.00 0.00 38.04 3.71
2790 8951 1.989165 CTTCGGCTCAGTTTCTCGAAG 59.011 52.381 8.91 8.91 46.44 3.79
2791 8952 0.243907 TCGGCTCAGTTTCTCGAAGG 59.756 55.000 0.00 0.00 0.00 3.46
2792 8953 0.038159 CGGCTCAGTTTCTCGAAGGT 60.038 55.000 0.00 0.00 0.00 3.50
2793 8954 1.433534 GGCTCAGTTTCTCGAAGGTG 58.566 55.000 0.00 0.00 0.00 4.00
2794 8955 1.433534 GCTCAGTTTCTCGAAGGTGG 58.566 55.000 0.00 0.00 0.00 4.61
2795 8956 1.270358 GCTCAGTTTCTCGAAGGTGGT 60.270 52.381 0.00 0.00 0.00 4.16
2796 8957 2.678324 CTCAGTTTCTCGAAGGTGGTC 58.322 52.381 0.00 0.00 0.00 4.02
2797 8958 2.035961 CTCAGTTTCTCGAAGGTGGTCA 59.964 50.000 0.00 0.00 0.00 4.02
2798 8959 2.632996 TCAGTTTCTCGAAGGTGGTCAT 59.367 45.455 0.00 0.00 0.00 3.06
2799 8960 3.830178 TCAGTTTCTCGAAGGTGGTCATA 59.170 43.478 0.00 0.00 0.00 2.15
2800 8961 4.082190 TCAGTTTCTCGAAGGTGGTCATAG 60.082 45.833 0.00 0.00 0.00 2.23
2801 8962 3.195825 AGTTTCTCGAAGGTGGTCATAGG 59.804 47.826 0.00 0.00 0.00 2.57
2802 8963 1.776662 TCTCGAAGGTGGTCATAGGG 58.223 55.000 0.00 0.00 0.00 3.53
2803 8964 0.753262 CTCGAAGGTGGTCATAGGGG 59.247 60.000 0.00 0.00 0.00 4.79
2804 8965 0.042131 TCGAAGGTGGTCATAGGGGT 59.958 55.000 0.00 0.00 0.00 4.95
2805 8966 1.288633 TCGAAGGTGGTCATAGGGGTA 59.711 52.381 0.00 0.00 0.00 3.69
2806 8967 1.687123 CGAAGGTGGTCATAGGGGTAG 59.313 57.143 0.00 0.00 0.00 3.18
2807 8968 2.047830 GAAGGTGGTCATAGGGGTAGG 58.952 57.143 0.00 0.00 0.00 3.18
2808 8969 0.267960 AGGTGGTCATAGGGGTAGGG 59.732 60.000 0.00 0.00 0.00 3.53
2809 8970 0.030399 GGTGGTCATAGGGGTAGGGT 60.030 60.000 0.00 0.00 0.00 4.34
2810 8971 1.129058 GTGGTCATAGGGGTAGGGTG 58.871 60.000 0.00 0.00 0.00 4.61
2811 8972 0.720232 TGGTCATAGGGGTAGGGTGT 59.280 55.000 0.00 0.00 0.00 4.16
2812 8973 1.129058 GGTCATAGGGGTAGGGTGTG 58.871 60.000 0.00 0.00 0.00 3.82
2813 8974 0.468648 GTCATAGGGGTAGGGTGTGC 59.531 60.000 0.00 0.00 0.00 4.57
2814 8975 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
2815 8976 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
2816 8977 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
2817 8978 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
2818 8979 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
2819 8980 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
2820 8981 1.667151 GGTAGGGTGTGCGTGTGTA 59.333 57.895 0.00 0.00 0.00 2.90
2821 8982 0.668401 GGTAGGGTGTGCGTGTGTAC 60.668 60.000 0.00 0.00 0.00 2.90
2822 8983 0.032403 GTAGGGTGTGCGTGTGTACA 59.968 55.000 0.00 0.00 38.46 2.90
2823 8984 0.970640 TAGGGTGTGCGTGTGTACAT 59.029 50.000 0.00 0.00 42.79 2.29
2824 8985 0.107831 AGGGTGTGCGTGTGTACATT 59.892 50.000 0.00 0.00 42.79 2.71
2825 8986 0.948678 GGGTGTGCGTGTGTACATTT 59.051 50.000 0.00 0.00 42.79 2.32
2826 8987 2.144730 GGGTGTGCGTGTGTACATTTA 58.855 47.619 0.00 0.00 42.79 1.40
2827 8988 2.745281 GGGTGTGCGTGTGTACATTTAT 59.255 45.455 0.00 0.00 42.79 1.40
2828 8989 3.933955 GGGTGTGCGTGTGTACATTTATA 59.066 43.478 0.00 0.00 42.79 0.98
2829 8990 4.033587 GGGTGTGCGTGTGTACATTTATAG 59.966 45.833 0.00 0.00 42.79 1.31
2830 8991 4.033587 GGTGTGCGTGTGTACATTTATAGG 59.966 45.833 0.00 0.00 42.79 2.57
2831 8992 4.033587 GTGTGCGTGTGTACATTTATAGGG 59.966 45.833 0.00 0.00 42.79 3.53
2832 8993 4.081586 TGTGCGTGTGTACATTTATAGGGA 60.082 41.667 0.00 0.00 35.67 4.20
2833 8994 5.054477 GTGCGTGTGTACATTTATAGGGAT 58.946 41.667 0.00 0.00 0.00 3.85
2834 8995 5.050363 GTGCGTGTGTACATTTATAGGGATG 60.050 44.000 0.00 0.00 0.00 3.51
2835 8996 5.163395 TGCGTGTGTACATTTATAGGGATGA 60.163 40.000 0.00 0.00 0.00 2.92
2836 8997 5.405571 GCGTGTGTACATTTATAGGGATGAG 59.594 44.000 0.00 0.00 0.00 2.90
2837 8998 6.737622 GCGTGTGTACATTTATAGGGATGAGA 60.738 42.308 0.00 0.00 0.00 3.27
2838 8999 6.863645 CGTGTGTACATTTATAGGGATGAGAG 59.136 42.308 0.00 0.00 0.00 3.20
2839 9000 7.470147 CGTGTGTACATTTATAGGGATGAGAGT 60.470 40.741 0.00 0.00 0.00 3.24
2840 9001 8.857098 GTGTGTACATTTATAGGGATGAGAGTA 58.143 37.037 0.00 0.00 0.00 2.59
2841 9002 9.601810 TGTGTACATTTATAGGGATGAGAGTAT 57.398 33.333 0.00 0.00 0.00 2.12
2842 9003 9.862371 GTGTACATTTATAGGGATGAGAGTATG 57.138 37.037 0.00 0.00 0.00 2.39
2843 9004 9.601810 TGTACATTTATAGGGATGAGAGTATGT 57.398 33.333 0.00 0.00 0.00 2.29
2844 9005 9.862371 GTACATTTATAGGGATGAGAGTATGTG 57.138 37.037 0.00 0.00 0.00 3.21
2845 9006 7.390027 ACATTTATAGGGATGAGAGTATGTGC 58.610 38.462 0.00 0.00 0.00 4.57
2846 9007 5.644977 TTATAGGGATGAGAGTATGTGCG 57.355 43.478 0.00 0.00 0.00 5.34
2847 9008 1.781786 AGGGATGAGAGTATGTGCGT 58.218 50.000 0.00 0.00 0.00 5.24
2848 9009 2.945456 AGGGATGAGAGTATGTGCGTA 58.055 47.619 0.00 0.00 0.00 4.42
2849 9010 3.501349 AGGGATGAGAGTATGTGCGTAT 58.499 45.455 0.00 0.00 0.00 3.06
2850 9011 3.256879 AGGGATGAGAGTATGTGCGTATG 59.743 47.826 0.00 0.00 0.00 2.39
2851 9012 3.005897 GGGATGAGAGTATGTGCGTATGT 59.994 47.826 0.00 0.00 0.00 2.29
2852 9013 4.217767 GGGATGAGAGTATGTGCGTATGTA 59.782 45.833 0.00 0.00 0.00 2.29
2853 9014 5.105716 GGGATGAGAGTATGTGCGTATGTAT 60.106 44.000 0.00 0.00 0.00 2.29
2854 9015 5.802451 GGATGAGAGTATGTGCGTATGTATG 59.198 44.000 0.00 0.00 0.00 2.39
2855 9016 6.349363 GGATGAGAGTATGTGCGTATGTATGA 60.349 42.308 0.00 0.00 0.00 2.15
2856 9017 6.002062 TGAGAGTATGTGCGTATGTATGAG 57.998 41.667 0.00 0.00 0.00 2.90
2857 9018 4.799678 AGAGTATGTGCGTATGTATGAGC 58.200 43.478 0.00 0.00 0.00 4.26
2858 9019 3.565516 AGTATGTGCGTATGTATGAGCG 58.434 45.455 0.00 0.00 0.00 5.03
2863 9024 0.111089 GCGTATGTATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
2864 9025 1.208259 CGTATGTATGAGCGCTTGCA 58.792 50.000 13.26 6.90 42.66 4.08
2865 9026 1.794701 CGTATGTATGAGCGCTTGCAT 59.205 47.619 13.26 14.69 42.66 3.96
2866 9027 2.159920 CGTATGTATGAGCGCTTGCATC 60.160 50.000 13.26 6.49 42.66 3.91
2867 9028 2.251409 ATGTATGAGCGCTTGCATCT 57.749 45.000 13.26 0.00 42.66 2.90
2868 9029 1.292992 TGTATGAGCGCTTGCATCTG 58.707 50.000 13.26 0.00 42.66 2.90
2869 9030 0.041488 GTATGAGCGCTTGCATCTGC 60.041 55.000 13.26 0.00 42.66 4.26
3032 9194 4.015578 ACGTAAAGCGCGTCAACA 57.984 50.000 8.43 0.00 46.11 3.33
3141 9303 1.075525 TATGACTAGTGGGCCCGCT 60.076 57.895 38.73 38.73 40.24 5.52
3147 9309 2.463589 CTAGTGGGCCCGCTTGTCAA 62.464 60.000 41.51 23.03 37.92 3.18
3213 9375 1.079819 CGAACCTGCGACCTGACAT 60.080 57.895 0.00 0.00 0.00 3.06
3229 9391 4.381932 CCTGACATTTGGGAAATACTTGGC 60.382 45.833 0.00 0.00 0.00 4.52
3234 9396 3.756082 TTGGGAAATACTTGGCCTCAT 57.244 42.857 3.32 0.00 0.00 2.90
3238 9400 4.415179 TGGGAAATACTTGGCCTCATCATA 59.585 41.667 3.32 0.00 0.00 2.15
3272 9434 4.892934 TGTTTTCAAGTTAATGTCAGCCCT 59.107 37.500 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 35 7.233348 TCCCAAGAAAGTAGCTTCAAATCAAAT 59.767 33.333 0.00 0.00 0.00 2.32
67 71 7.766283 AGCTTTTTAGATTACAGGAGCAAATC 58.234 34.615 0.00 0.00 0.00 2.17
193 197 5.178061 TGAAACTCCACTAGTGTGCATATG 58.822 41.667 21.18 0.00 42.54 1.78
194 198 5.420725 TGAAACTCCACTAGTGTGCATAT 57.579 39.130 21.18 3.32 42.54 1.78
244 248 1.814429 TTCTGGAGGGACCTGTTCAA 58.186 50.000 0.00 0.00 39.86 2.69
303 312 1.275291 TGGAGTGATCGGGACACTTTC 59.725 52.381 0.00 0.00 46.57 2.62
367 376 3.530265 TTGACTGAACCAGTACGTGTT 57.470 42.857 0.00 3.16 45.44 3.32
373 382 7.521423 GCAATTGTTACATTGACTGAACCAGTA 60.521 37.037 7.40 0.00 45.44 2.74
376 385 5.301551 AGCAATTGTTACATTGACTGAACCA 59.698 36.000 7.40 0.00 0.00 3.67
377 386 5.772521 AGCAATTGTTACATTGACTGAACC 58.227 37.500 7.40 0.00 0.00 3.62
380 389 7.230510 AGGTTTAGCAATTGTTACATTGACTGA 59.769 33.333 7.40 3.74 0.00 3.41
456 491 8.031277 GTCGTTTAGATCACTAAAGGGAGTTTA 58.969 37.037 16.62 1.43 45.42 2.01
460 495 6.127703 TGAGTCGTTTAGATCACTAAAGGGAG 60.128 42.308 16.62 5.81 45.42 4.30
462 497 5.962433 TGAGTCGTTTAGATCACTAAAGGG 58.038 41.667 16.62 7.83 45.42 3.95
464 499 8.918961 AGATTGAGTCGTTTAGATCACTAAAG 57.081 34.615 0.00 0.00 45.42 1.85
467 502 9.562408 AGATAGATTGAGTCGTTTAGATCACTA 57.438 33.333 0.00 0.00 0.00 2.74
468 503 8.458573 AGATAGATTGAGTCGTTTAGATCACT 57.541 34.615 0.00 0.00 0.00 3.41
475 510 9.390795 GCGTTTATAGATAGATTGAGTCGTTTA 57.609 33.333 0.00 0.00 0.00 2.01
476 511 8.136165 AGCGTTTATAGATAGATTGAGTCGTTT 58.864 33.333 0.00 0.00 0.00 3.60
479 514 8.508800 AAAGCGTTTATAGATAGATTGAGTCG 57.491 34.615 0.00 0.00 0.00 4.18
494 529 8.885722 TCCGTGAAGAAATATAAAAGCGTTTAT 58.114 29.630 19.27 19.27 41.71 1.40
495 530 8.254178 TCCGTGAAGAAATATAAAAGCGTTTA 57.746 30.769 7.30 7.30 33.76 2.01
499 534 5.277345 CCCTCCGTGAAGAAATATAAAAGCG 60.277 44.000 0.00 0.00 0.00 4.68
500 535 5.820947 TCCCTCCGTGAAGAAATATAAAAGC 59.179 40.000 0.00 0.00 0.00 3.51
501 536 7.048512 ACTCCCTCCGTGAAGAAATATAAAAG 58.951 38.462 0.00 0.00 0.00 2.27
502 537 6.954232 ACTCCCTCCGTGAAGAAATATAAAA 58.046 36.000 0.00 0.00 0.00 1.52
504 539 5.070047 GGACTCCCTCCGTGAAGAAATATAA 59.930 44.000 0.00 0.00 0.00 0.98
506 541 3.388350 GGACTCCCTCCGTGAAGAAATAT 59.612 47.826 0.00 0.00 0.00 1.28
508 543 1.555533 GGACTCCCTCCGTGAAGAAAT 59.444 52.381 0.00 0.00 0.00 2.17
509 544 0.974383 GGACTCCCTCCGTGAAGAAA 59.026 55.000 0.00 0.00 0.00 2.52
510 545 0.114560 AGGACTCCCTCCGTGAAGAA 59.885 55.000 0.00 0.00 45.10 2.52
514 549 1.305046 GGAAGGACTCCCTCCGTGA 60.305 63.158 0.00 0.00 45.10 4.35
527 578 3.367498 CGAGGTCTGTTTCACTAGGAAGG 60.367 52.174 0.00 0.00 36.72 3.46
613 681 5.830000 AACTGGTTTGTAAACAAGACCTC 57.170 39.130 16.63 0.00 41.52 3.85
773 841 1.134220 TGGTGTTGAGAAGAAGGCGTT 60.134 47.619 0.00 0.00 0.00 4.84
774 842 0.468226 TGGTGTTGAGAAGAAGGCGT 59.532 50.000 0.00 0.00 0.00 5.68
775 843 0.868406 GTGGTGTTGAGAAGAAGGCG 59.132 55.000 0.00 0.00 0.00 5.52
776 844 1.239347 GGTGGTGTTGAGAAGAAGGC 58.761 55.000 0.00 0.00 0.00 4.35
791 859 4.323477 TGAACTTCCGGCCGGTGG 62.323 66.667 41.57 33.70 36.47 4.61
853 921 1.623359 CGGCTCTTCTTTCTCGACTG 58.377 55.000 0.00 0.00 0.00 3.51
899 971 4.401925 AGAAGTGGAATTTCTGGTCAAGG 58.598 43.478 0.00 0.00 41.71 3.61
908 980 7.554476 ACCAAGCTTATAGAGAAGTGGAATTTC 59.446 37.037 0.00 0.00 31.98 2.17
915 987 5.582665 GGAACACCAAGCTTATAGAGAAGTG 59.417 44.000 0.00 0.06 0.00 3.16
988 1060 3.369471 GGTTGCTCCATTACTGCTCACTA 60.369 47.826 0.00 0.00 35.97 2.74
994 1067 1.448985 TTCGGTTGCTCCATTACTGC 58.551 50.000 0.00 0.00 35.57 4.40
1011 1084 1.063174 GTCTGCGTCAGCCATTGATTC 59.937 52.381 2.45 0.00 44.33 2.52
1057 1130 5.771469 CATGTTAACTTTCAGATGCCACAA 58.229 37.500 7.22 0.00 0.00 3.33
1091 1171 5.238214 CCATTGCAAGAAGAGCTTATACCTC 59.762 44.000 4.94 0.00 34.31 3.85
1333 1613 1.371389 GCTCGTTCTTCACCGTCGT 60.371 57.895 0.00 0.00 0.00 4.34
1575 4939 2.034999 GGGACGATGGTGGCCAAA 59.965 61.111 7.24 0.00 36.95 3.28
1601 4965 0.534203 TTCCTTGTCACGCACCTTCC 60.534 55.000 0.00 0.00 0.00 3.46
1669 5059 2.702592 TGGCGAAGGGTAACTAATGG 57.297 50.000 0.00 0.00 0.00 3.16
1670 5060 3.945285 ACAATGGCGAAGGGTAACTAATG 59.055 43.478 0.00 0.00 0.00 1.90
2081 6460 2.671914 GCATTTGCGCAATGGAAGAGAA 60.672 45.455 25.64 5.65 42.51 2.87
2131 6530 3.811497 GTCAATCTTCGGATCATGCATCA 59.189 43.478 0.00 0.00 32.82 3.07
2132 6531 3.811497 TGTCAATCTTCGGATCATGCATC 59.189 43.478 0.00 0.00 32.82 3.91
2143 6566 6.141211 CACAAAACTCAACATGTCAATCTTCG 59.859 38.462 0.00 0.00 0.00 3.79
2309 7031 2.009774 ACAGACTTCACACAACACTGC 58.990 47.619 0.00 0.00 0.00 4.40
2404 8543 6.072452 GGGGAATCCGAATTAGAACATTCATC 60.072 42.308 0.00 0.00 33.35 2.92
2418 8576 1.422024 TGTCTTTGTGGGGAATCCGAA 59.578 47.619 0.00 0.00 38.76 4.30
2419 8577 1.060729 TGTCTTTGTGGGGAATCCGA 58.939 50.000 0.00 0.00 38.76 4.55
2420 8578 1.904287 TTGTCTTTGTGGGGAATCCG 58.096 50.000 0.00 0.00 38.76 4.18
2430 8588 4.007659 ACCGAAGAAGTGTTTGTCTTTGT 58.992 39.130 0.00 0.00 34.62 2.83
2432 8590 5.064325 GTGTACCGAAGAAGTGTTTGTCTTT 59.936 40.000 0.00 0.00 34.23 2.52
2433 8591 4.569564 GTGTACCGAAGAAGTGTTTGTCTT 59.430 41.667 0.00 0.00 36.80 3.01
2435 8593 3.246936 GGTGTACCGAAGAAGTGTTTGTC 59.753 47.826 0.00 0.00 0.00 3.18
2437 8595 2.546789 GGGTGTACCGAAGAAGTGTTTG 59.453 50.000 0.00 0.00 36.71 2.93
2440 8598 0.683412 GGGGTGTACCGAAGAAGTGT 59.317 55.000 0.00 0.00 41.60 3.55
2441 8599 0.974383 AGGGGTGTACCGAAGAAGTG 59.026 55.000 0.00 0.00 41.60 3.16
2442 8600 2.610438 TAGGGGTGTACCGAAGAAGT 57.390 50.000 0.00 0.00 41.60 3.01
2443 8601 3.007182 TGTTTAGGGGTGTACCGAAGAAG 59.993 47.826 0.00 0.00 41.60 2.85
2445 8603 2.299867 GTGTTTAGGGGTGTACCGAAGA 59.700 50.000 0.00 0.00 41.60 2.87
2446 8604 2.037511 TGTGTTTAGGGGTGTACCGAAG 59.962 50.000 0.00 0.00 41.60 3.79
2447 8605 2.045524 TGTGTTTAGGGGTGTACCGAA 58.954 47.619 0.00 0.00 41.60 4.30
2448 8606 1.714541 TGTGTTTAGGGGTGTACCGA 58.285 50.000 0.00 0.00 41.60 4.69
2449 8607 2.773993 ATGTGTTTAGGGGTGTACCG 57.226 50.000 0.00 0.00 41.60 4.02
2450 8608 4.392754 CGTTTATGTGTTTAGGGGTGTACC 59.607 45.833 0.00 0.00 39.11 3.34
2451 8609 5.120674 GTCGTTTATGTGTTTAGGGGTGTAC 59.879 44.000 0.00 0.00 0.00 2.90
2452 8610 5.011943 AGTCGTTTATGTGTTTAGGGGTGTA 59.988 40.000 0.00 0.00 0.00 2.90
2454 8612 4.320870 AGTCGTTTATGTGTTTAGGGGTG 58.679 43.478 0.00 0.00 0.00 4.61
2468 8629 7.592885 AGTATGGGCTAATCTAAGTCGTTTA 57.407 36.000 0.00 0.00 0.00 2.01
2473 8634 7.727181 TGAAGAAGTATGGGCTAATCTAAGTC 58.273 38.462 0.00 0.00 0.00 3.01
2474 8635 7.676683 TGAAGAAGTATGGGCTAATCTAAGT 57.323 36.000 0.00 0.00 0.00 2.24
2492 8653 5.220912 CCATCATGCGCTTTCTTATGAAGAA 60.221 40.000 9.73 0.00 45.30 2.52
2507 8668 7.642669 AGTTTCTAAAATATGACCATCATGCG 58.357 34.615 1.49 0.00 37.70 4.73
2515 8676 7.258441 GGGCAAAGAGTTTCTAAAATATGACC 58.742 38.462 0.00 0.00 0.00 4.02
2519 8680 7.339466 ACATCGGGCAAAGAGTTTCTAAAATAT 59.661 33.333 0.00 0.00 0.00 1.28
2520 8681 6.657541 ACATCGGGCAAAGAGTTTCTAAAATA 59.342 34.615 0.00 0.00 0.00 1.40
2527 8688 5.527582 ACATATACATCGGGCAAAGAGTTTC 59.472 40.000 0.00 0.00 0.00 2.78
2549 8710 4.397103 CCCGTTCTCTGTACAGTGTATACA 59.603 45.833 21.99 0.08 0.00 2.29
2551 8712 3.949754 CCCCGTTCTCTGTACAGTGTATA 59.050 47.826 21.99 2.60 0.00 1.47
2554 8715 0.966920 CCCCGTTCTCTGTACAGTGT 59.033 55.000 21.99 0.00 0.00 3.55
2555 8716 0.246635 CCCCCGTTCTCTGTACAGTG 59.753 60.000 21.99 19.40 0.00 3.66
2556 8717 1.542187 GCCCCCGTTCTCTGTACAGT 61.542 60.000 21.99 0.00 0.00 3.55
2557 8718 1.218316 GCCCCCGTTCTCTGTACAG 59.782 63.158 17.17 17.17 0.00 2.74
2558 8719 1.534476 TGCCCCCGTTCTCTGTACA 60.534 57.895 0.00 0.00 0.00 2.90
2573 8734 3.948719 TTGTCGAGGGGGTGTGCC 61.949 66.667 0.00 0.00 0.00 5.01
2578 8739 2.826003 GGTTGGTTGTCGAGGGGGT 61.826 63.158 0.00 0.00 0.00 4.95
2609 8770 6.271488 ACTATCCAATCACATGTTGGTTTG 57.729 37.500 13.50 9.50 45.05 2.93
2610 8771 6.916360 AACTATCCAATCACATGTTGGTTT 57.084 33.333 13.50 6.69 45.05 3.27
2613 8774 6.484643 CCTCTAACTATCCAATCACATGTTGG 59.515 42.308 8.52 8.52 45.94 3.77
2614 8775 6.484643 CCCTCTAACTATCCAATCACATGTTG 59.515 42.308 0.00 0.00 0.00 3.33
2615 8776 6.386927 TCCCTCTAACTATCCAATCACATGTT 59.613 38.462 0.00 0.00 0.00 2.71
2616 8777 5.905331 TCCCTCTAACTATCCAATCACATGT 59.095 40.000 0.00 0.00 0.00 3.21
2617 8778 6.183361 TGTCCCTCTAACTATCCAATCACATG 60.183 42.308 0.00 0.00 0.00 3.21
2618 8779 5.905331 TGTCCCTCTAACTATCCAATCACAT 59.095 40.000 0.00 0.00 0.00 3.21
2619 8780 5.277250 TGTCCCTCTAACTATCCAATCACA 58.723 41.667 0.00 0.00 0.00 3.58
2620 8781 5.364157 ACTGTCCCTCTAACTATCCAATCAC 59.636 44.000 0.00 0.00 0.00 3.06
2621 8782 5.363868 CACTGTCCCTCTAACTATCCAATCA 59.636 44.000 0.00 0.00 0.00 2.57
2622 8783 5.221541 CCACTGTCCCTCTAACTATCCAATC 60.222 48.000 0.00 0.00 0.00 2.67
2623 8784 4.656112 CCACTGTCCCTCTAACTATCCAAT 59.344 45.833 0.00 0.00 0.00 3.16
2624 8785 4.030913 CCACTGTCCCTCTAACTATCCAA 58.969 47.826 0.00 0.00 0.00 3.53
2625 8786 3.012502 ACCACTGTCCCTCTAACTATCCA 59.987 47.826 0.00 0.00 0.00 3.41
2626 8787 3.644335 ACCACTGTCCCTCTAACTATCC 58.356 50.000 0.00 0.00 0.00 2.59
2627 8788 5.477637 GGATACCACTGTCCCTCTAACTATC 59.522 48.000 0.00 0.00 0.00 2.08
2628 8789 5.395611 GGATACCACTGTCCCTCTAACTAT 58.604 45.833 0.00 0.00 0.00 2.12
2629 8790 4.801164 GGATACCACTGTCCCTCTAACTA 58.199 47.826 0.00 0.00 0.00 2.24
2630 8791 3.644335 GGATACCACTGTCCCTCTAACT 58.356 50.000 0.00 0.00 0.00 2.24
2645 8806 3.531508 TCCTAGTGGGCTGGGGATACC 62.532 61.905 0.00 0.00 46.71 2.73
2646 8807 0.105142 TCCTAGTGGGCTGGGGATAC 60.105 60.000 0.00 0.00 42.88 2.24
2647 8808 0.874594 ATCCTAGTGGGCTGGGGATA 59.125 55.000 0.00 0.00 42.88 2.59
2648 8809 0.474660 GATCCTAGTGGGCTGGGGAT 60.475 60.000 0.00 0.00 42.88 3.85
2649 8810 1.074471 GATCCTAGTGGGCTGGGGA 60.074 63.158 0.00 0.00 42.88 4.81
2650 8811 0.988145 TTGATCCTAGTGGGCTGGGG 60.988 60.000 0.00 0.00 42.88 4.96
2651 8812 0.471617 CTTGATCCTAGTGGGCTGGG 59.528 60.000 0.00 0.00 43.88 4.45
2652 8813 1.139853 GACTTGATCCTAGTGGGCTGG 59.860 57.143 2.59 0.00 34.39 4.85
2653 8814 1.139853 GGACTTGATCCTAGTGGGCTG 59.860 57.143 2.59 0.00 45.22 4.85
2654 8815 1.501582 GGACTTGATCCTAGTGGGCT 58.498 55.000 2.59 0.00 45.22 5.19
2664 8825 1.135139 TGCGAGCACTAGGACTTGATC 59.865 52.381 5.85 0.00 0.00 2.92
2665 8826 1.186200 TGCGAGCACTAGGACTTGAT 58.814 50.000 5.85 0.00 0.00 2.57
2666 8827 1.186200 ATGCGAGCACTAGGACTTGA 58.814 50.000 0.00 0.00 0.00 3.02
2667 8828 2.015736 AATGCGAGCACTAGGACTTG 57.984 50.000 0.00 0.00 0.00 3.16
2668 8829 4.372656 GAATAATGCGAGCACTAGGACTT 58.627 43.478 0.00 0.00 0.00 3.01
2669 8830 3.243907 GGAATAATGCGAGCACTAGGACT 60.244 47.826 0.00 0.00 0.00 3.85
2670 8831 3.060602 GGAATAATGCGAGCACTAGGAC 58.939 50.000 0.00 0.00 0.00 3.85
2671 8832 2.965831 AGGAATAATGCGAGCACTAGGA 59.034 45.455 0.00 0.00 0.00 2.94
2672 8833 3.062763 CAGGAATAATGCGAGCACTAGG 58.937 50.000 0.00 0.00 0.00 3.02
2673 8834 3.062763 CCAGGAATAATGCGAGCACTAG 58.937 50.000 0.00 0.00 0.00 2.57
2674 8835 2.698274 TCCAGGAATAATGCGAGCACTA 59.302 45.455 0.00 0.00 0.00 2.74
2675 8836 1.486310 TCCAGGAATAATGCGAGCACT 59.514 47.619 0.00 0.00 0.00 4.40
2676 8837 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
2677 8838 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
2678 8839 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
2679 8840 7.874940 TGAAATAAATCCAGGAATAATGCGAG 58.125 34.615 0.00 0.00 0.00 5.03
2680 8841 7.815840 TGAAATAAATCCAGGAATAATGCGA 57.184 32.000 0.00 0.00 0.00 5.10
2690 8851 6.507023 CCGAAAATCCTGAAATAAATCCAGG 58.493 40.000 0.00 0.00 46.64 4.45
2691 8852 5.979517 GCCGAAAATCCTGAAATAAATCCAG 59.020 40.000 0.00 0.00 0.00 3.86
2692 8853 5.449862 CGCCGAAAATCCTGAAATAAATCCA 60.450 40.000 0.00 0.00 0.00 3.41
2693 8854 4.976116 CGCCGAAAATCCTGAAATAAATCC 59.024 41.667 0.00 0.00 0.00 3.01
2694 8855 5.816919 TCGCCGAAAATCCTGAAATAAATC 58.183 37.500 0.00 0.00 0.00 2.17
2695 8856 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
2696 8857 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
2697 8858 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
2698 8859 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
2699 8860 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
2700 8861 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
2701 8862 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
2702 8863 0.392327 TGCATCGCCGAAAATCCTGA 60.392 50.000 0.00 0.00 0.00 3.86
2703 8864 0.248215 GTGCATCGCCGAAAATCCTG 60.248 55.000 0.00 0.00 0.00 3.86
2704 8865 0.392998 AGTGCATCGCCGAAAATCCT 60.393 50.000 0.00 0.00 0.00 3.24
2705 8866 0.451783 AAGTGCATCGCCGAAAATCC 59.548 50.000 0.00 0.00 0.00 3.01
2706 8867 2.177173 GAAAGTGCATCGCCGAAAATC 58.823 47.619 0.00 0.00 0.00 2.17
2707 8868 1.539388 TGAAAGTGCATCGCCGAAAAT 59.461 42.857 0.00 0.00 0.00 1.82
2708 8869 0.947960 TGAAAGTGCATCGCCGAAAA 59.052 45.000 0.00 0.00 0.00 2.29
2709 8870 0.516877 CTGAAAGTGCATCGCCGAAA 59.483 50.000 0.00 0.00 0.00 3.46
2710 8871 2.161831 CTGAAAGTGCATCGCCGAA 58.838 52.632 0.00 0.00 0.00 4.30
2711 8872 3.874873 CTGAAAGTGCATCGCCGA 58.125 55.556 0.00 0.00 0.00 5.54
2722 8883 3.495001 GGAACGTCTTCTTCCACTGAAAG 59.505 47.826 0.00 0.00 37.68 2.62
2723 8884 3.463944 GGAACGTCTTCTTCCACTGAAA 58.536 45.455 0.00 0.00 37.68 2.69
2724 8885 3.107642 GGAACGTCTTCTTCCACTGAA 57.892 47.619 0.00 0.00 37.68 3.02
2725 8886 2.814280 GGAACGTCTTCTTCCACTGA 57.186 50.000 0.00 0.00 37.68 3.41
2745 8906 2.609183 ATAGGCGCCTCGTTGTCGAC 62.609 60.000 36.73 9.11 41.35 4.20
2746 8907 2.412323 ATAGGCGCCTCGTTGTCGA 61.412 57.895 36.73 14.03 44.12 4.20
2747 8908 2.104331 ATAGGCGCCTCGTTGTCG 59.896 61.111 36.73 0.00 38.55 4.35
2748 8909 0.249489 ATCATAGGCGCCTCGTTGTC 60.249 55.000 36.73 0.00 0.00 3.18
2749 8910 0.530650 CATCATAGGCGCCTCGTTGT 60.531 55.000 36.73 14.07 0.00 3.32
2750 8911 0.249447 TCATCATAGGCGCCTCGTTG 60.249 55.000 36.73 27.42 0.00 4.10
2751 8912 0.249489 GTCATCATAGGCGCCTCGTT 60.249 55.000 36.73 17.71 0.00 3.85
2752 8913 1.109920 AGTCATCATAGGCGCCTCGT 61.110 55.000 36.73 21.12 0.00 4.18
2753 8914 0.032678 AAGTCATCATAGGCGCCTCG 59.967 55.000 36.73 25.72 0.00 4.63
2754 8915 1.789506 GAAGTCATCATAGGCGCCTC 58.210 55.000 36.73 17.40 0.00 4.70
2755 8916 0.032678 CGAAGTCATCATAGGCGCCT 59.967 55.000 34.85 34.85 0.00 5.52
2756 8917 0.946221 CCGAAGTCATCATAGGCGCC 60.946 60.000 21.89 21.89 0.00 6.53
2757 8918 1.560860 GCCGAAGTCATCATAGGCGC 61.561 60.000 0.00 0.00 34.94 6.53
2758 8919 2.522060 GCCGAAGTCATCATAGGCG 58.478 57.895 0.00 0.00 34.94 5.52
2759 8920 1.069204 TGAGCCGAAGTCATCATAGGC 59.931 52.381 0.00 0.00 44.45 3.93
2760 8921 2.363680 ACTGAGCCGAAGTCATCATAGG 59.636 50.000 0.00 0.00 0.00 2.57
2761 8922 3.724508 ACTGAGCCGAAGTCATCATAG 57.275 47.619 0.00 0.00 0.00 2.23
2762 8923 4.160439 AGAAACTGAGCCGAAGTCATCATA 59.840 41.667 0.00 0.00 0.00 2.15
2763 8924 3.055530 AGAAACTGAGCCGAAGTCATCAT 60.056 43.478 0.00 0.00 0.00 2.45
2764 8925 2.300152 AGAAACTGAGCCGAAGTCATCA 59.700 45.455 0.00 0.00 0.00 3.07
2765 8926 2.926838 GAGAAACTGAGCCGAAGTCATC 59.073 50.000 0.00 0.00 0.00 2.92
2766 8927 2.672478 CGAGAAACTGAGCCGAAGTCAT 60.672 50.000 0.00 0.00 0.00 3.06
2767 8928 1.335964 CGAGAAACTGAGCCGAAGTCA 60.336 52.381 0.00 0.00 0.00 3.41
2768 8929 1.068472 TCGAGAAACTGAGCCGAAGTC 60.068 52.381 0.00 0.00 0.00 3.01
2769 8930 0.959553 TCGAGAAACTGAGCCGAAGT 59.040 50.000 0.00 0.00 0.00 3.01
2770 8931 1.989165 CTTCGAGAAACTGAGCCGAAG 59.011 52.381 0.00 0.00 46.20 3.79
2771 8932 1.336887 CCTTCGAGAAACTGAGCCGAA 60.337 52.381 0.00 0.00 37.61 4.30
2772 8933 0.243907 CCTTCGAGAAACTGAGCCGA 59.756 55.000 0.00 0.00 0.00 5.54
2773 8934 0.038159 ACCTTCGAGAAACTGAGCCG 60.038 55.000 0.00 0.00 0.00 5.52
2774 8935 1.433534 CACCTTCGAGAAACTGAGCC 58.566 55.000 0.00 0.00 0.00 4.70
2775 8936 1.270358 ACCACCTTCGAGAAACTGAGC 60.270 52.381 0.00 0.00 0.00 4.26
2776 8937 2.035961 TGACCACCTTCGAGAAACTGAG 59.964 50.000 0.00 0.00 0.00 3.35
2777 8938 2.036387 TGACCACCTTCGAGAAACTGA 58.964 47.619 0.00 0.00 0.00 3.41
2778 8939 2.526304 TGACCACCTTCGAGAAACTG 57.474 50.000 0.00 0.00 0.00 3.16
2779 8940 3.195825 CCTATGACCACCTTCGAGAAACT 59.804 47.826 0.00 0.00 0.00 2.66
2780 8941 3.522553 CCTATGACCACCTTCGAGAAAC 58.477 50.000 0.00 0.00 0.00 2.78
2781 8942 2.500098 CCCTATGACCACCTTCGAGAAA 59.500 50.000 0.00 0.00 0.00 2.52
2782 8943 2.108168 CCCTATGACCACCTTCGAGAA 58.892 52.381 0.00 0.00 0.00 2.87
2783 8944 1.688311 CCCCTATGACCACCTTCGAGA 60.688 57.143 0.00 0.00 0.00 4.04
2784 8945 0.753262 CCCCTATGACCACCTTCGAG 59.247 60.000 0.00 0.00 0.00 4.04
2785 8946 0.042131 ACCCCTATGACCACCTTCGA 59.958 55.000 0.00 0.00 0.00 3.71
2786 8947 1.687123 CTACCCCTATGACCACCTTCG 59.313 57.143 0.00 0.00 0.00 3.79
2787 8948 2.047830 CCTACCCCTATGACCACCTTC 58.952 57.143 0.00 0.00 0.00 3.46
2788 8949 1.345112 CCCTACCCCTATGACCACCTT 60.345 57.143 0.00 0.00 0.00 3.50
2789 8950 0.267960 CCCTACCCCTATGACCACCT 59.732 60.000 0.00 0.00 0.00 4.00
2790 8951 0.030399 ACCCTACCCCTATGACCACC 60.030 60.000 0.00 0.00 0.00 4.61
2791 8952 1.129058 CACCCTACCCCTATGACCAC 58.871 60.000 0.00 0.00 0.00 4.16
2792 8953 0.720232 ACACCCTACCCCTATGACCA 59.280 55.000 0.00 0.00 0.00 4.02
2793 8954 1.129058 CACACCCTACCCCTATGACC 58.871 60.000 0.00 0.00 0.00 4.02
2794 8955 0.468648 GCACACCCTACCCCTATGAC 59.531 60.000 0.00 0.00 0.00 3.06
2795 8956 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
2796 8957 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
2797 8958 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
2798 8959 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
2799 8960 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
2800 8961 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
2801 8962 1.818959 TACACACGCACACCCTACCC 61.819 60.000 0.00 0.00 0.00 3.69
2802 8963 0.668401 GTACACACGCACACCCTACC 60.668 60.000 0.00 0.00 0.00 3.18
2803 8964 0.032403 TGTACACACGCACACCCTAC 59.968 55.000 0.00 0.00 0.00 3.18
2804 8965 0.970640 ATGTACACACGCACACCCTA 59.029 50.000 0.00 0.00 0.00 3.53
2805 8966 0.107831 AATGTACACACGCACACCCT 59.892 50.000 0.00 0.00 0.00 4.34
2806 8967 0.948678 AAATGTACACACGCACACCC 59.051 50.000 0.00 0.00 0.00 4.61
2807 8968 4.033587 CCTATAAATGTACACACGCACACC 59.966 45.833 0.00 0.00 0.00 4.16
2808 8969 4.033587 CCCTATAAATGTACACACGCACAC 59.966 45.833 0.00 0.00 0.00 3.82
2809 8970 4.081586 TCCCTATAAATGTACACACGCACA 60.082 41.667 0.00 0.00 0.00 4.57
2810 8971 4.435425 TCCCTATAAATGTACACACGCAC 58.565 43.478 0.00 0.00 0.00 5.34
2811 8972 4.739587 TCCCTATAAATGTACACACGCA 57.260 40.909 0.00 0.00 0.00 5.24
2812 8973 5.294356 TCATCCCTATAAATGTACACACGC 58.706 41.667 0.00 0.00 0.00 5.34
2813 8974 6.745116 TCTCATCCCTATAAATGTACACACG 58.255 40.000 0.00 0.00 0.00 4.49
2814 8975 7.727181 ACTCTCATCCCTATAAATGTACACAC 58.273 38.462 0.00 0.00 0.00 3.82
2815 8976 7.914427 ACTCTCATCCCTATAAATGTACACA 57.086 36.000 0.00 0.00 0.00 3.72
2816 8977 9.862371 CATACTCTCATCCCTATAAATGTACAC 57.138 37.037 0.00 0.00 0.00 2.90
2817 8978 9.601810 ACATACTCTCATCCCTATAAATGTACA 57.398 33.333 0.00 0.00 0.00 2.90
2818 8979 9.862371 CACATACTCTCATCCCTATAAATGTAC 57.138 37.037 0.00 0.00 0.00 2.90
2819 8980 8.531982 GCACATACTCTCATCCCTATAAATGTA 58.468 37.037 0.00 0.00 0.00 2.29
2820 8981 7.390027 GCACATACTCTCATCCCTATAAATGT 58.610 38.462 0.00 0.00 0.00 2.71
2821 8982 6.533012 CGCACATACTCTCATCCCTATAAATG 59.467 42.308 0.00 0.00 0.00 2.32
2822 8983 6.211584 ACGCACATACTCTCATCCCTATAAAT 59.788 38.462 0.00 0.00 0.00 1.40
2823 8984 5.538813 ACGCACATACTCTCATCCCTATAAA 59.461 40.000 0.00 0.00 0.00 1.40
2824 8985 5.077564 ACGCACATACTCTCATCCCTATAA 58.922 41.667 0.00 0.00 0.00 0.98
2825 8986 4.663334 ACGCACATACTCTCATCCCTATA 58.337 43.478 0.00 0.00 0.00 1.31
2826 8987 3.501349 ACGCACATACTCTCATCCCTAT 58.499 45.455 0.00 0.00 0.00 2.57
2827 8988 2.945456 ACGCACATACTCTCATCCCTA 58.055 47.619 0.00 0.00 0.00 3.53
2828 8989 1.781786 ACGCACATACTCTCATCCCT 58.218 50.000 0.00 0.00 0.00 4.20
2829 8990 3.005897 ACATACGCACATACTCTCATCCC 59.994 47.826 0.00 0.00 0.00 3.85
2830 8991 4.244425 ACATACGCACATACTCTCATCC 57.756 45.455 0.00 0.00 0.00 3.51
2831 8992 6.612306 TCATACATACGCACATACTCTCATC 58.388 40.000 0.00 0.00 0.00 2.92
2832 8993 6.575162 TCATACATACGCACATACTCTCAT 57.425 37.500 0.00 0.00 0.00 2.90
2833 8994 5.562890 GCTCATACATACGCACATACTCTCA 60.563 44.000 0.00 0.00 0.00 3.27
2834 8995 4.854291 GCTCATACATACGCACATACTCTC 59.146 45.833 0.00 0.00 0.00 3.20
2835 8996 4.613850 CGCTCATACATACGCACATACTCT 60.614 45.833 0.00 0.00 0.00 3.24
2836 8997 3.604198 CGCTCATACATACGCACATACTC 59.396 47.826 0.00 0.00 0.00 2.59
2837 8998 3.565516 CGCTCATACATACGCACATACT 58.434 45.455 0.00 0.00 0.00 2.12
2838 8999 3.954030 CGCTCATACATACGCACATAC 57.046 47.619 0.00 0.00 0.00 2.39
2845 9006 1.208259 TGCAAGCGCTCATACATACG 58.792 50.000 12.06 0.00 39.64 3.06
2846 9007 3.062763 AGATGCAAGCGCTCATACATAC 58.937 45.455 12.06 6.78 39.64 2.39
2847 9008 3.062042 CAGATGCAAGCGCTCATACATA 58.938 45.455 12.06 0.00 39.64 2.29
2848 9009 1.871676 CAGATGCAAGCGCTCATACAT 59.128 47.619 12.06 12.32 39.64 2.29
2849 9010 1.292992 CAGATGCAAGCGCTCATACA 58.707 50.000 12.06 7.28 39.64 2.29
2850 9011 0.041488 GCAGATGCAAGCGCTCATAC 60.041 55.000 12.06 5.50 41.59 2.39
2851 9012 2.314256 GCAGATGCAAGCGCTCATA 58.686 52.632 12.06 0.00 41.59 2.15
2852 9013 3.108343 GCAGATGCAAGCGCTCAT 58.892 55.556 12.06 11.47 41.59 2.90
2862 9023 4.488126 TTCTTTAACACAGTGCAGATGC 57.512 40.909 0.00 0.00 42.50 3.91
2863 9024 6.304356 TCTTTCTTTAACACAGTGCAGATG 57.696 37.500 0.00 0.00 0.00 2.90
2864 9025 5.471456 CCTCTTTCTTTAACACAGTGCAGAT 59.529 40.000 0.00 0.00 0.00 2.90
2865 9026 4.816385 CCTCTTTCTTTAACACAGTGCAGA 59.184 41.667 0.00 0.00 0.00 4.26
2866 9027 4.576463 ACCTCTTTCTTTAACACAGTGCAG 59.424 41.667 0.00 0.00 0.00 4.41
2867 9028 4.523083 ACCTCTTTCTTTAACACAGTGCA 58.477 39.130 0.00 0.00 0.00 4.57
2868 9029 6.613755 TTACCTCTTTCTTTAACACAGTGC 57.386 37.500 0.00 0.00 0.00 4.40
2870 9031 9.841295 TGTATTTACCTCTTTCTTTAACACAGT 57.159 29.630 0.00 0.00 0.00 3.55
2873 9034 9.590088 CGTTGTATTTACCTCTTTCTTTAACAC 57.410 33.333 0.00 0.00 0.00 3.32
2874 9035 9.545105 TCGTTGTATTTACCTCTTTCTTTAACA 57.455 29.630 0.00 0.00 0.00 2.41
2877 9038 9.158233 CCATCGTTGTATTTACCTCTTTCTTTA 57.842 33.333 0.00 0.00 0.00 1.85
2878 9039 7.664318 ACCATCGTTGTATTTACCTCTTTCTTT 59.336 33.333 0.00 0.00 0.00 2.52
2879 9040 7.119262 CACCATCGTTGTATTTACCTCTTTCTT 59.881 37.037 0.00 0.00 0.00 2.52
2880 9041 6.594159 CACCATCGTTGTATTTACCTCTTTCT 59.406 38.462 0.00 0.00 0.00 2.52
2881 9042 6.674760 GCACCATCGTTGTATTTACCTCTTTC 60.675 42.308 0.00 0.00 0.00 2.62
2954 9116 5.529800 GTCAAGTTTTAGAACCAGTTAGGCA 59.470 40.000 0.00 0.00 43.14 4.75
3032 9194 0.469494 TCAGCCATACACGATGCCAT 59.531 50.000 0.00 0.00 33.79 4.40
3194 9356 2.432628 GTCAGGTCGCAGGTTCGG 60.433 66.667 0.00 0.00 0.00 4.30
3213 9375 3.534357 TGAGGCCAAGTATTTCCCAAA 57.466 42.857 5.01 0.00 0.00 3.28
3229 9391 7.587037 AAACATATTTGGTGGTATGATGAGG 57.413 36.000 0.00 0.00 33.56 3.86
3234 9396 8.415950 ACTTGAAAACATATTTGGTGGTATGA 57.584 30.769 0.00 0.00 33.56 2.15
3238 9400 9.487790 CATTAACTTGAAAACATATTTGGTGGT 57.512 29.630 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.